BLASTX nr result
ID: Atropa21_contig00007736
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atropa21_contig00007736
(1678 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD08711.1| topoisomerase I [Nicotiana tabacum] gi|14626487|g... 224 1e-77
dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata] 223 2e-76
ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisom... 224 6e-72
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus] 214 2e-71
ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citr... 211 5e-68
ref|XP_006452480.1| hypothetical protein CICLE_v10007398mg [Citr... 211 5e-68
ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform ... 211 8e-68
dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata] 215 4e-67
ref|XP_002300344.1| DNA topoisomerase family protein [Populus tr... 213 9e-67
dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. g... 215 2e-66
dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata] 215 2e-66
dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana] 214 1e-65
ref|XP_002317355.1| DNA topoisomerase family protein [Populus tr... 206 2e-65
dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35] 213 6e-65
dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea] 213 1e-64
ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus ... 215 1e-64
ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinife... 227 1e-64
dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa] 211 2e-64
gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma ca... 200 2e-64
gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma ca... 200 2e-64
>gb|AAD08711.1| topoisomerase I [Nicotiana tabacum] gi|14626487|gb|AAK69776.1|
topoisomerase I [Nicotiana tabacum]
Length = 852
Score = 224 bits (570), Expect(2) = 1e-77
Identities = 108/132 (81%), Positives = 110/132 (83%)
Frame = -3
Query: 398 PSSGEGQKWTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYMS 219
PSSGEGQKWTTLVHNGVIFPPPYKPHG+KMLYKGKPVDLTPEQEEVA MYAVMLDTDYMS
Sbjct: 327 PSSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMYAVMLDTDYMS 386
Query: 218 KQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXXX 39
K QFKENF NDWRKILGKNHVIQNL+DCDFTPIYE EKEKKKQMST
Sbjct: 387 KLQFKENFMNDWRKILGKNHVIQNLDDCDFTPIYERPSSEKEKKKQMSTKRKRPLREEKL 446
Query: 38 XXXXKYMWAIVD 3
KYMWAIVD
Sbjct: 447 KQEEKYMWAIVD 458
Score = 95.1 bits (235), Expect(2) = 1e-77
Identities = 67/158 (42%), Positives = 89/158 (56%), Gaps = 16/158 (10%)
Frame = -1
Query: 907 DRRVAGQVSDVRSPNGQSSSAHKVKTATSSRASPAVSPLGSPKASPLESRFQLKSNDGAT 728
D+ ++ ++S S + S + + T+ S + S S PL SRFQLKSN GA+
Sbjct: 146 DKPLSARLSSGLSKSNSSHANKVLGTSASVQKSRPPKKEDSDDEIPLASRFQLKSNAGAS 205
Query: 727 TSKSYD------KVQKNGSASTTILSKRPLCKVKYTAQASVKKP---------RISDASV 593
TSKS + K+++NG STT+LSKRP V + +K R+S+ASV
Sbjct: 206 TSKSSNSEEVKPKIRQNGLPSTTVLSKRPPGDVSLLLRLQLKSLGFLMHLHLFRVSEASV 265
Query: 592 KAETKA-DDGDHVPTSQRIKKYATSANKLSTAVKATKV 482
K E K DD D VP SQRIKK SA+KLS+A KATKV
Sbjct: 266 KPEKKTEDDDDDVPISQRIKKSVASASKLSSAKKATKV 303
Score = 82.0 bits (201), Expect = 7e-13
Identities = 71/192 (36%), Positives = 86/192 (44%), Gaps = 7/192 (3%)
Frame = -1
Query: 1039 MAVEDFAKARSM-EXXXXXXDIPSVLKRGSATXXXXXXXXXXXKHDRRVAGQVSDVRSPN 863
MAVE F+K + M E D+P V KR S T K D R Q SDVRSPN
Sbjct: 1 MAVEAFSKTKLMAEVDDDDDDMPLVFKRSSTTSKQNQSNSSSQKQDGRSGRQASDVRSPN 60
Query: 862 GQSSSAHKVKTATSSRASPAVSPLGSPKASPLESRFQLKSNDGATTSKSYDKVQKNGSAS 683
GQSSSA KVK TSS+AS AVSP SPKASP R N + S S K+ +
Sbjct: 61 GQSSSAEKVKAGTSSKASRAVSPFTSPKASPSSGRTSPAPN--SRPSASAGNQAKDVNQQ 118
Query: 682 TTILSKRPLCKVKYTAQASVKKPRISDASVKAETKADDGDHVPTSQRI-----KKYATSA 518
+ I+ P K + S + D D P S R+ K ++ A
Sbjct: 119 SKIVPNEP-------------KQAVEPKSEPNDEAEDSEDDKPLSARLSSGLSKSNSSHA 165
Query: 517 NK-LSTAVKATK 485
NK L T+ K
Sbjct: 166 NKVLGTSASVQK 177
>dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
Length = 894
Score = 223 bits (568), Expect(2) = 2e-76
Identities = 103/132 (78%), Positives = 112/132 (84%)
Frame = -3
Query: 398 PSSGEGQKWTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYMS 219
PSSGEG+KW TLVHNGVIFPPPYKPHG+KMLYKGKPVDLTPEQEEVA M+AVMLDTDYM+
Sbjct: 344 PSSGEGKKWNTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMT 403
Query: 218 KQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXXX 39
K +FKENF +DWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKK+M+
Sbjct: 404 KSKFKENFMDDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKKMTAEEKKVLKEERL 463
Query: 38 XXXXKYMWAIVD 3
KYMWAIV+
Sbjct: 464 KQEEKYMWAIVN 475
Score = 92.0 bits (227), Expect(2) = 2e-76
Identities = 69/159 (43%), Positives = 89/159 (55%), Gaps = 32/159 (20%)
Frame = -1
Query: 862 GQSSSAHKVKTATSSRASPAVSPL------GSPKASPLESRFQLKSNDGATTSKSYDK-- 707
G S++A+K +S + P P S PL S+F+LK+N G +T KSY+
Sbjct: 157 GSSNNANKGLINSSPASLPVPKPEINRYSDDSDDEIPLSSKFRLKANAGTSTVKSYESDD 216
Query: 706 -------VQKNGSA-----STTILSKRPLCKVKYTAQASVKKPRISDASV---------K 590
Q+NGS S+ ++KRPL +VK + Q+SVKKP++SDAS K
Sbjct: 217 NKTLVSNFQQNGSINRGSKSSIKVNKRPLGEVKSSVQSSVKKPKLSDASTPVNNKQASKK 276
Query: 589 AETKADDG--DHVPTSQRIKKYATSANKLSTA-VKATKV 482
AE KADD DHVP SQR+KK ATS NK STA K TKV
Sbjct: 277 AEPKADDSDDDHVPISQRMKKSATSGNKSSTAKQKVTKV 315
>ref|XP_006364175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 1-like [Solanum
tuberosum]
Length = 905
Score = 224 bits (571), Expect(2) = 6e-72
Identities = 104/132 (78%), Positives = 112/132 (84%)
Frame = -3
Query: 398 PSSGEGQKWTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYMS 219
PSSG+GQKWTTL HNGVIFPPPYKPHG+KMLYKGKPVDLTPEQEEVA MYAVMLDT+Y++
Sbjct: 355 PSSGDGQKWTTLEHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMYAVMLDTEYLT 414
Query: 218 KQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXXX 39
KQQFKENF NDWRKILGKNHVIQ LE+C+FTPIYEWHQ EKEKKKQMS+
Sbjct: 415 KQQFKENFMNDWRKILGKNHVIQKLEECNFTPIYEWHQSEKEKKKQMSSEEKKALREEKL 474
Query: 38 XXXXKYMWAIVD 3
KYMWAIVD
Sbjct: 475 KQEEKYMWAIVD 486
Score = 75.9 bits (185), Expect(2) = 6e-72
Identities = 62/156 (39%), Positives = 84/156 (53%), Gaps = 25/156 (16%)
Frame = -1
Query: 874 RSPNG--QSSSAHK---VKTATSSRASPAVSPLGSPKASPLESRFQLKSNDGATTSKSYD 710
R P+G +S+S H + T+TS + S S PL SRFQ+KS+ GA+TSK
Sbjct: 175 RVPSGLSKSNSIHANNVLGTSTSVQKSRPPKKEDSDDEIPLASRFQMKSSAGASTSKFSS 234
Query: 709 ------KVQKNGSASTTILSKRPLCKVKYTAQASVKKP---------RISDASVKAETKA 575
K+++NG S T+LSKRP +V + +K +S+ SVK E K
Sbjct: 235 SEEVKPKIRQNGLPSATVLSKRPPGEVSLLLRLQLKSLDFLMHLHLFLVSNXSVKTEKKT 294
Query: 574 -DDGDHVPTSQRIKK----YATSANKLSTAVKATKV 482
DD D VP SQRIKK + SA+K+S+ KATKV
Sbjct: 295 EDDDDEVPLSQRIKKAVASASASASKVSSVKKATKV 330
Score = 99.0 bits (245), Expect = 5e-18
Identities = 71/186 (38%), Positives = 93/186 (50%), Gaps = 9/186 (4%)
Frame = -1
Query: 1039 MAVEDFAKARSMEXXXXXXDIPSVLKRGSATXXXXXXXXXXXKHDRRVAGQVSDVRSPNG 860
MAVE FAK ME D+P V KR S T K D R QV DVRSPNG
Sbjct: 1 MAVEAFAKTNLMEDIDDDDDMPLVFKRSSTTSKQNQSNSSSQKQDGRSGRQVPDVRSPNG 60
Query: 859 QSSSAHKVKTATSSRASPAVSPLGSPKASPLESRFQLKSNDGATTSKSYDKVQKNGSAST 680
QSSS HKVKTA SS+ASPAVSPL SPKA+PL SR N + + + S ++
Sbjct: 61 QSSSTHKVKTAASSKASPAVSPLTSPKAAPLSSRTSPAPNFRTSPAPNSRTPPAPNSRTS 120
Query: 679 TILSKRPLC----KVKYTAQASVKKPRISDASVKAETKADD-----GDHVPTSQRIKKYA 527
+ RP + K Q S P+ S +++ +++ +D D P S R+
Sbjct: 121 PAPNSRPSSSAGNQAKNVNQQSNIAPKESKQAIEPKSEPNDEAEDSEDDKPLSARVPSGL 180
Query: 526 TSANKL 509
+ +N +
Sbjct: 181 SKSNSI 186
>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
Length = 910
Score = 214 bits (546), Expect(2) = 2e-71
Identities = 100/132 (75%), Positives = 109/132 (82%)
Frame = -3
Query: 398 PSSGEGQKWTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYMS 219
PSSGEG+KW L HNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVA M+AVMLDTDYM+
Sbjct: 358 PSSGEGKKWNKLEHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMN 417
Query: 218 KQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXXX 39
K +FKENF+ DW+KILGKNHVIQNLE+CDF+PIYEWHQ EKEKKKQM+T
Sbjct: 418 KPRFKENFFGDWKKILGKNHVIQNLENCDFSPIYEWHQSEKEKKKQMTTEEKKALKEEKL 477
Query: 38 XXXXKYMWAIVD 3
KYMWA VD
Sbjct: 478 KQEEKYMWAWVD 489
Score = 83.6 bits (205), Expect(2) = 2e-71
Identities = 63/153 (41%), Positives = 79/153 (51%), Gaps = 28/153 (18%)
Frame = -1
Query: 856 SSSAHKVKTATSSRASPAVSPLGSPKASPLESRFQLKSNDGATTSKSYD---------KV 704
S+S+ K T S+ S PL SRF LKS G +TSK+YD K+
Sbjct: 177 SASSSKGNTNQVSKEGSKPENEDSDDEKPLSSRFPLKSGVGESTSKAYDSDDDKPLAKKL 236
Query: 703 QKNGSAS--------TTILSKRPLCKVKYTAQASVKKPRISD---------ASVKAETKA 575
Q NGSA + + +KRP +K + Q SVKKP++S ASVK E KA
Sbjct: 237 QHNGSAMRDGQPNKYSNMSNKRPPGDIKSSNQLSVKKPKLSSVTAPTNKKQASVKPEPKA 296
Query: 574 --DDGDHVPTSQRIKKYATSANKLSTAVKATKV 482
DD DH+P SQRIKK TS +K S+ K TKV
Sbjct: 297 EDDDDDHLPISQRIKKSPTSESKSSSIKKTTKV 329
>ref|XP_006452479.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
gi|567920950|ref|XP_006452481.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
gi|557555705|gb|ESR65719.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
gi|557555707|gb|ESR65721.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
Length = 902
Score = 211 bits (537), Expect(2) = 5e-68
Identities = 98/133 (73%), Positives = 108/133 (81%), Gaps = 1/133 (0%)
Frame = -3
Query: 398 PSSGEGQK-WTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYM 222
P SG+GQK WTTLVHNGVIFPPPY PHG+KMLYKGK V+LTPEQEEVA M+AVMLDTDYM
Sbjct: 350 PGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 409
Query: 221 SKQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXX 42
K +F+ENFWNDWRK+LGKNHVIQNLE CDF PIY+WHQ +KEKKKQMS+
Sbjct: 410 QKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 469
Query: 41 XXXXXKYMWAIVD 3
KYMWAIVD
Sbjct: 470 LKQEEKYMWAIVD 482
Score = 75.9 bits (185), Expect(2) = 5e-68
Identities = 60/165 (36%), Positives = 78/165 (47%), Gaps = 26/165 (15%)
Frame = -1
Query: 901 RVAGQVSDVRSPNGQSSSAHKVKTATSSRASPAVSPLGSPKASPLESRFQLKSNDGATTS 722
R+ G +V G S + A S + P S PL SRF KSN G + +
Sbjct: 162 RLKGNTKNVNQGIGASKA-----DAAISEVNVKTDPEDSDDEVPLSSRFP-KSNAGTSGA 215
Query: 721 KSYD---------KVQKNGSAS-------TTILSKRPLCKVKYTAQASVKKPRISDAS-- 596
K D KVQ+NGS S +++ KRPL K + +S KKP++SD S
Sbjct: 216 KPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKE 275
Query: 595 -------VKAETKADDGDHVPTSQRIKKYATSANK-LSTAVKATK 485
VK E KADD DH+P SQR+K A S K ++ KATK
Sbjct: 276 VKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATK 320
>ref|XP_006452480.1| hypothetical protein CICLE_v10007398mg [Citrus clementina]
gi|557555706|gb|ESR65720.1| hypothetical protein
CICLE_v10007398mg [Citrus clementina]
Length = 824
Score = 211 bits (537), Expect(2) = 5e-68
Identities = 98/133 (73%), Positives = 108/133 (81%), Gaps = 1/133 (0%)
Frame = -3
Query: 398 PSSGEGQK-WTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYM 222
P SG+GQK WTTLVHNGVIFPPPY PHG+KMLYKGK V+LTPEQEEVA M+AVMLDTDYM
Sbjct: 350 PGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 409
Query: 221 SKQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXX 42
K +F+ENFWNDWRK+LGKNHVIQNLE CDF PIY+WHQ +KEKKKQMS+
Sbjct: 410 QKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 469
Query: 41 XXXXXKYMWAIVD 3
KYMWAIVD
Sbjct: 470 LKQEEKYMWAIVD 482
Score = 75.9 bits (185), Expect(2) = 5e-68
Identities = 60/165 (36%), Positives = 78/165 (47%), Gaps = 26/165 (15%)
Frame = -1
Query: 901 RVAGQVSDVRSPNGQSSSAHKVKTATSSRASPAVSPLGSPKASPLESRFQLKSNDGATTS 722
R+ G +V G S + A S + P S PL SRF KSN G + +
Sbjct: 162 RLKGNTKNVNQGIGASKA-----DAAISEVNVKTDPEDSDDEVPLSSRFP-KSNAGTSGA 215
Query: 721 KSYD---------KVQKNGSAS-------TTILSKRPLCKVKYTAQASVKKPRISDAS-- 596
K D KVQ+NGS S +++ KRPL K + +S KKP++SD S
Sbjct: 216 KPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKE 275
Query: 595 -------VKAETKADDGDHVPTSQRIKKYATSANK-LSTAVKATK 485
VK E KADD DH+P SQR+K A S K ++ KATK
Sbjct: 276 VKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATK 320
>ref|XP_006474977.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Citrus sinensis]
gi|568842074|ref|XP_006474978.1| PREDICTED: DNA
topoisomerase 1-like isoform X2 [Citrus sinensis]
gi|568842076|ref|XP_006474979.1| PREDICTED: DNA
topoisomerase 1-like isoform X3 [Citrus sinensis]
gi|568842078|ref|XP_006474980.1| PREDICTED: DNA
topoisomerase 1-like isoform X4 [Citrus sinensis]
Length = 902
Score = 211 bits (537), Expect(2) = 8e-68
Identities = 98/133 (73%), Positives = 108/133 (81%), Gaps = 1/133 (0%)
Frame = -3
Query: 398 PSSGEGQK-WTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYM 222
P SG+GQK WTTLVHNGVIFPPPY PHG+KMLYKGK V+LTPEQEEVA M+AVMLDTDYM
Sbjct: 350 PGSGDGQKKWTTLVHNGVIFPPPYLPHGVKMLYKGKEVNLTPEQEEVATMFAVMLDTDYM 409
Query: 221 SKQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXX 42
K +F+ENFWNDWRK+LGKNHVIQNLE CDF PIY+WHQ +KEKKKQMS+
Sbjct: 410 QKPKFRENFWNDWRKLLGKNHVIQNLEGCDFKPIYDWHQEQKEKKKQMSSEEKKALKEEK 469
Query: 41 XXXXXKYMWAIVD 3
KYMWAIVD
Sbjct: 470 LKQEEKYMWAIVD 482
Score = 75.1 bits (183), Expect(2) = 8e-68
Identities = 60/165 (36%), Positives = 78/165 (47%), Gaps = 26/165 (15%)
Frame = -1
Query: 901 RVAGQVSDVRSPNGQSSSAHKVKTATSSRASPAVSPLGSPKASPLESRFQLKSNDGATTS 722
R+ G +V G S + A S + P S PL SRF KSN G + +
Sbjct: 162 RLKGNSKNVNQGIGASKA-----DAAISEVNVKTDPEDSDDEVPLSSRFP-KSNAGTSGA 215
Query: 721 KSYD---------KVQKNGSAS-------TTILSKRPLCKVKYTAQASVKKPRISDAS-- 596
K D KVQ+NGS S +++ KRPL K + +S KKP++SD S
Sbjct: 216 KPIDSDEKKPLASKVQQNGSTSRETQQKSSSVPVKRPLQKASSSGASSAKKPKVSDTSKE 275
Query: 595 -------VKAETKADDGDHVPTSQRIKKYATSANK-LSTAVKATK 485
VK E KADD DH+P SQR+K A S K ++ KATK
Sbjct: 276 VKVKQVTVKVEKKADDDDHIPISQRMKNSAPSVKKSVTNTAKATK 320
>dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
Length = 925
Score = 215 bits (547), Expect(2) = 4e-67
Identities = 99/132 (75%), Positives = 110/132 (83%)
Frame = -3
Query: 398 PSSGEGQKWTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYMS 219
P SGEGQKWTTLVHNGVIFPPPYKPHG+KMLYK +P+ LTPEQEEVA M+AVMLDTDYM+
Sbjct: 374 PGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMN 433
Query: 218 KQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXXX 39
K FKENF++DW+KILGKNH+IQNLEDCDF PIYEWHQ+EKEKKKQM+T
Sbjct: 434 KPCFKENFFSDWKKILGKNHMIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKL 493
Query: 38 XXXXKYMWAIVD 3
KYMWAIVD
Sbjct: 494 QQEEKYMWAIVD 505
Score = 68.9 bits (167), Expect(2) = 4e-67
Identities = 62/178 (34%), Positives = 80/178 (44%), Gaps = 52/178 (29%)
Frame = -1
Query: 871 SPNGQSSSAHKVKTATSSRASPAVSPL-GSPKASPLESRFQLKSNDGATTSKSYD----- 710
S G+S+ A+K + S P + S PL RF KS+ G +TSKSYD
Sbjct: 163 SSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSCRFTSKSSLGESTSKSYDSDEKK 222
Query: 709 ----KVQKNGSAS--------TTILSKRPLCKVKYTAQASVKKPRISD---------ASV 593
KVQ+NGSAS ++ +KRP + K Q+SVKKP++S A+V
Sbjct: 223 PLAAKVQQNGSASRDGPMNKSASLSNKRPPGEAKSLNQSSVKKPKLSSPITSISNKQAAV 282
Query: 592 KAETKA-------------------------DDGDHVPTSQRIKKYATSANKLSTAVK 494
K E KA DD D+VP SQRIKK S +K S VK
Sbjct: 283 KPEPKAEDDDDNIPLSQRGKKSQSATSKPKDDDDDNVPISQRIKKSPASVSKSSVPVK 340
>ref|XP_002300344.1| DNA topoisomerase family protein [Populus trichocarpa]
gi|222847602|gb|EEE85149.1| DNA topoisomerase family
protein [Populus trichocarpa]
Length = 877
Score = 213 bits (542), Expect(2) = 9e-67
Identities = 97/133 (72%), Positives = 109/133 (81%), Gaps = 1/133 (0%)
Frame = -3
Query: 398 PSSGEGQK-WTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYM 222
P S +GQK WTTLVHNGVIFPPPYKPHG+K+LYKGKP+DLTPEQEEVA M+AVM DTDY+
Sbjct: 326 PGSSDGQKKWTTLVHNGVIFPPPYKPHGVKILYKGKPIDLTPEQEEVATMFAVMKDTDYV 385
Query: 221 SKQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXX 42
K QF++NFWNDWRK+LGKNHVIQ L+DCDF PIYEWHQ+EKEKKKQMST
Sbjct: 386 QKPQFRQNFWNDWRKLLGKNHVIQKLDDCDFNPIYEWHQQEKEKKKQMSTEEKKVLKEEK 445
Query: 41 XXXXXKYMWAIVD 3
KYMWAIV+
Sbjct: 446 LKQEEKYMWAIVN 458
Score = 69.7 bits (169), Expect(2) = 9e-67
Identities = 51/123 (41%), Positives = 66/123 (53%), Gaps = 26/123 (21%)
Frame = -1
Query: 772 PLESRFQLKSNDGATTSKSY---------DKVQKNGSA-------STTILSKRPLCKVKY 641
PL SRF +KSN G ++SKS K Q NGS S+ + +KRP+
Sbjct: 175 PLSSRFAMKSNAGTSSSKSIRSSEIRPFPSKSQLNGSTKNDKQQKSSVVPTKRPMDNKVP 234
Query: 640 TAQASVKKPRISDA---------SVKAETKADDGDHVPTSQRIKKYATSANKLSTA-VKA 491
+ +S KKP++ DA +VK E KADD DH+ SQR+KK +SANK S A K
Sbjct: 235 SNHSSAKKPKLLDACTTTKVKQVTVKVEQKADDDDHLTISQRMKKADSSANKSSFAKKKV 294
Query: 490 TKV 482
TKV
Sbjct: 295 TKV 297
>dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. glabra]
Length = 920
Score = 215 bits (547), Expect(2) = 2e-66
Identities = 98/132 (74%), Positives = 110/132 (83%)
Frame = -3
Query: 398 PSSGEGQKWTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYMS 219
P SGEGQKWTTLVHNGVIFPPPYKPHG+KMLYK +P+ LTPEQEEVA M+AVMLDTDYM+
Sbjct: 375 PGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMN 434
Query: 218 KQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXXX 39
K +FKENF++DW+K+LGKNH IQNLEDCDF PIYEWHQ+EKEKKKQM+T
Sbjct: 435 KPRFKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKL 494
Query: 38 XXXXKYMWAIVD 3
KYMWAIVD
Sbjct: 495 QQEEKYMWAIVD 506
Score = 67.0 bits (162), Expect(2) = 2e-66
Identities = 61/178 (34%), Positives = 80/178 (44%), Gaps = 52/178 (29%)
Frame = -1
Query: 871 SPNGQSSSAHKVKTATSSRASPAVSPL-GSPKASPLESRFQLKSNDGATTSKSYD----- 710
S G+S+ A+K + S P + S PL RF KS+ G +TSKSYD
Sbjct: 164 SSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKK 223
Query: 709 ----KVQKNGSAS--------TTILSKRPLCKVKYTAQASVKKPRISD---------ASV 593
KVQ NGSAS ++ +KRP +VK Q+S+KKP++S A+V
Sbjct: 224 PLAAKVQPNGSASRDSPMNKSASLSNKRPPGEVKSLNQSSLKKPKLSSPITSISNKQAAV 283
Query: 592 KAETKADDGD-------------------------HVPTSQRIKKYATSANKLSTAVK 494
K E KA+D D +VP SQRIKK S +K S VK
Sbjct: 284 KPEPKAEDDDDNIPLSQRGKKSQTATSKPKDEDDDNVPISQRIKKSPASVSKSSAPVK 341
>dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]
Length = 920
Score = 215 bits (547), Expect(2) = 2e-66
Identities = 98/132 (74%), Positives = 110/132 (83%)
Frame = -3
Query: 398 PSSGEGQKWTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYMS 219
P SGEGQKWTTLVHNGVIFPPPYKPHG+KMLYK +P+ LTPEQEEVA M+AVMLDTDYM+
Sbjct: 375 PGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMN 434
Query: 218 KQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXXX 39
K +FKENF++DW+K+LGKNH IQNLEDCDF PIYEWHQ+EKEKKKQM+T
Sbjct: 435 KPRFKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEEKL 494
Query: 38 XXXXKYMWAIVD 3
KYMWAIVD
Sbjct: 495 QQEEKYMWAIVD 506
Score = 67.0 bits (162), Expect(2) = 2e-66
Identities = 61/178 (34%), Positives = 80/178 (44%), Gaps = 52/178 (29%)
Frame = -1
Query: 871 SPNGQSSSAHKVKTATSSRASPAVSPL-GSPKASPLESRFQLKSNDGATTSKSYD----- 710
S G+S+ A+K + S P + S PL RF KS+ G +TSKSYD
Sbjct: 164 SSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFTSKSSLGESTSKSYDSDEKK 223
Query: 709 ----KVQKNGSAS--------TTILSKRPLCKVKYTAQASVKKPRISD---------ASV 593
KVQ NGSAS ++ +KRP +VK Q+S+KKP++S A+V
Sbjct: 224 PLAAKVQPNGSASRDSPMNKSASLSNKRPPGEVKSLNQSSLKKPKLSSPITSISNKQAAV 283
Query: 592 KAETKADDGD-------------------------HVPTSQRIKKYATSANKLSTAVK 494
K E KA+D D +VP SQRIKK S +K S VK
Sbjct: 284 KPEPKAEDDDDNIPLSQRGKKSQTATSKPKDEDDDNVPISQRIKKSPASVSKSSAPVK 341
>dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana]
Length = 926
Score = 214 bits (545), Expect(2) = 1e-65
Identities = 98/132 (74%), Positives = 110/132 (83%)
Frame = -3
Query: 398 PSSGEGQKWTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYMS 219
P SGEGQKWTTLVHNGV+FPPPYKPHG+KMLYK +P+ LTPEQEEVA M+AVMLDTDYM+
Sbjct: 375 PGSGEGQKWTTLVHNGVMFPPPYKPHGVKMLYKRQPLTLTPEQEEVATMFAVMLDTDYMN 434
Query: 218 KQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXXX 39
K +FKENF++DW+KILGKNH IQNLEDCDF PIYEWHQ+EKEKKKQM+T
Sbjct: 435 KPRFKENFFSDWKKILGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEERL 494
Query: 38 XXXXKYMWAIVD 3
KYMWAIVD
Sbjct: 495 QQEEKYMWAIVD 506
Score = 65.1 bits (157), Expect(2) = 1e-65
Identities = 60/178 (33%), Positives = 79/178 (44%), Gaps = 52/178 (29%)
Frame = -1
Query: 871 SPNGQSSSAHKVKTATSSRASPAVSPL-GSPKASPLESRFQLKSNDGATTSKSYD----- 710
S G+S+ A+K + S P + S PL RF KS+ G +TSKSYD
Sbjct: 164 SSMGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKK 223
Query: 709 ----KVQKNGSAS--------TTILSKRPLCKVKYTAQASVKKPRISD---------ASV 593
KVQ+NGSAS ++ +KR +VK Q+S+KKP++S A+V
Sbjct: 224 PLAAKVQQNGSASPEGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAV 283
Query: 592 KAETKADDGD-------------------------HVPTSQRIKKYATSANKLSTAVK 494
K E KA+D D H P SQRIKK S +K S VK
Sbjct: 284 KPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDHAPISQRIKKSPVSVSKSSAPVK 341
>ref|XP_002317355.1| DNA topoisomerase family protein [Populus trichocarpa]
gi|222860420|gb|EEE97967.1| DNA topoisomerase family
protein [Populus trichocarpa]
Length = 860
Score = 206 bits (523), Expect(2) = 2e-65
Identities = 95/133 (71%), Positives = 104/133 (78%), Gaps = 1/133 (0%)
Frame = -3
Query: 398 PSSGEGQK-WTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYM 222
P S +GQK W TLVHNGVIFPPPYKPHG+KMLYKGKPVDLTPEQEEVA M+AVM DT+Y+
Sbjct: 309 PGSSDGQKKWKTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMKDTEYV 368
Query: 221 SKQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXX 42
K QF +NFWNDWR +LGKNHVIQ LE CDF PIYEWHQ+EKEKKKQMST
Sbjct: 369 QKPQFLQNFWNDWRTLLGKNHVIQKLEACDFNPIYEWHQKEKEKKKQMSTEEKKAVREEK 428
Query: 41 XXXXXKYMWAIVD 3
YMWAIV+
Sbjct: 429 LKQEEMYMWAIVN 441
Score = 72.8 bits (177), Expect(2) = 2e-65
Identities = 50/120 (41%), Positives = 68/120 (56%), Gaps = 23/120 (19%)
Frame = -1
Query: 772 PLESRFQLKSNDGATTSKSYD---------KVQKNGSA-------STTILSKRPLCKVKY 641
PL SRF KSN G+++ K+ K+Q NGS S+ + +KRP+
Sbjct: 161 PLSSRFAAKSNAGSSSCKTISSSEKILLVSKIQLNGSTAKDKQQKSSAVPTKRPMDNKVP 220
Query: 640 TAQASVKKPRISDAS------VKAETKADDGDHVPTSQRIKKYATSANK-LSTAVKATKV 482
+ Q+ KKP++SDAS VKAE KADD DH+ SQR+KK ++S+NK LS TKV
Sbjct: 221 SNQSFAKKPKLSDASTTKQVTVKAELKADDDDHLTISQRMKKASSSSNKSLSVKQNVTKV 280
>dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35]
Length = 920
Score = 213 bits (542), Expect(2) = 6e-65
Identities = 97/132 (73%), Positives = 110/132 (83%)
Frame = -3
Query: 398 PSSGEGQKWTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYMS 219
P SGEGQKWTTLVHNGVIFPPPYKPHG+KMLYK +P+ LTPEQEEVA M+AVMLDTDYM+
Sbjct: 375 PGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPLTLTPEQEEVATMFAVMLDTDYMN 434
Query: 218 KQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXXX 39
K +FKENF++DW+K+LGKNH IQNLEDCDF PIYEWHQ+E+EKKKQM+T
Sbjct: 435 KPRFKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEREKKKQMTTEEKKALKDERL 494
Query: 38 XXXXKYMWAIVD 3
KYMWAIVD
Sbjct: 495 QQEEKYMWAIVD 506
Score = 63.5 bits (153), Expect(2) = 6e-65
Identities = 60/178 (33%), Positives = 79/178 (44%), Gaps = 52/178 (29%)
Frame = -1
Query: 871 SPNGQSSSAHKVKTATSSRASPAVSPL-GSPKASPLESRFQLKSNDGATTSKSYD----- 710
S G+S+ A+K + S P V S PL RF KS+ G +TSKSYD
Sbjct: 164 SSKGKSNHANKEGGDSCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKK 223
Query: 709 ----KVQKNGSAS--------TTILSKRPLCKVKYTAQASVKKPRISD---------ASV 593
KVQ+NGSAS ++ +KR +VK Q+S+KKP++S A+V
Sbjct: 224 PLAAKVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAV 283
Query: 592 KAETKADDGD-------------------------HVPTSQRIKKYATSANKLSTAVK 494
K E KA+D D + P SQRIKK S +K S VK
Sbjct: 284 KPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVK 341
>dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea]
Length = 920
Score = 213 bits (543), Expect(2) = 1e-64
Identities = 97/132 (73%), Positives = 109/132 (82%)
Frame = -3
Query: 398 PSSGEGQKWTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYMS 219
P SGEGQKWTTLVHNGVIFPPPYKPHG+KMLYK +P+ LTPEQEEVA M+AVMLDTDYM+
Sbjct: 375 PGSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKRQPITLTPEQEEVATMFAVMLDTDYMN 434
Query: 218 KQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXXX 39
K +FKENF++DW+K+LGKNH IQNLEDCDF PIYEWHQ+EKEKKKQM+T
Sbjct: 435 KPRFKENFFSDWKKMLGKNHTIQNLEDCDFGPIYEWHQQEKEKKKQMTTEEKKALKEERL 494
Query: 38 XXXXKYMWAIVD 3
KYMW IVD
Sbjct: 495 QQEEKYMWVIVD 506
Score = 62.4 bits (150), Expect(2) = 1e-64
Identities = 59/178 (33%), Positives = 78/178 (43%), Gaps = 52/178 (29%)
Frame = -1
Query: 871 SPNGQSSSAHKVKTATSSRASPAVSPL-GSPKASPLESRFQLKSNDGATTSKSYD----- 710
S G+S+ A+K + S P + S PL RF KS+ G +TSKSYD
Sbjct: 164 SSKGKSNHANKEGGDSCSIRRPVIEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKK 223
Query: 709 ----KVQKNGSAS--------TTILSKRPLCKVKYTAQASVKKPRISD---------ASV 593
KVQ NGSAS ++ +KR +VK Q+S+KKP++S A+V
Sbjct: 224 PLAAKVQPNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAV 283
Query: 592 KAETKADDGD-------------------------HVPTSQRIKKYATSANKLSTAVK 494
K E KA+D D + P SQRIKK S +K S VK
Sbjct: 284 KPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVK 341
>ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus communis]
gi|223531500|gb|EEF33331.1| DNA topoisomerase type I,
putative [Ricinus communis]
Length = 891
Score = 215 bits (547), Expect(2) = 1e-64
Identities = 100/133 (75%), Positives = 109/133 (81%), Gaps = 1/133 (0%)
Frame = -3
Query: 398 PSSGEGQK-WTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYM 222
PSS +GQK WTTL+HNGVIFPPPYKPHGIK+LYKG+PVDL PEQEEVA M+AVM DTDYM
Sbjct: 339 PSSTDGQKKWTTLIHNGVIFPPPYKPHGIKILYKGRPVDLAPEQEEVATMFAVMKDTDYM 398
Query: 221 SKQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXX 42
K +F ENFWNDWRK+LG+NHVIQ LEDCDFTPIYEWH+REKEKKKQMST
Sbjct: 399 QKPKFLENFWNDWRKLLGRNHVIQKLEDCDFTPIYEWHEREKEKKKQMSTEEKKAQKEEK 458
Query: 41 XXXXXKYMWAIVD 3
KYMWAIVD
Sbjct: 459 LRQEEKYMWAIVD 471
Score = 60.8 bits (146), Expect(2) = 1e-64
Identities = 49/123 (39%), Positives = 66/123 (53%), Gaps = 26/123 (21%)
Frame = -1
Query: 772 PLESRFQLKSNDGATTSKSYD---------KVQKNGSASTT-------ILSKRPLCKVKY 641
PL SRF +KS G + +K + KVQ+NGS S I +KRPL K
Sbjct: 190 PLCSRFPMKSTAGTSGNKPNNISEKKPLPSKVQQNGSTSKDKQQKAPLIPTKRPLDKANS 249
Query: 640 TAQASVKKPRIS---------DASVKAETKADDGDHVPTSQRIKKYATSANKLSTA-VKA 491
+ Q+S+KKP++S A+VKAE DD D +P +QR K +S +KLS+A KA
Sbjct: 250 SEQSSIKKPKLSAGSTITKVKQATVKAE--EDDPDDIPIAQRKKSLGSSESKLSSAKQKA 307
Query: 490 TKV 482
KV
Sbjct: 308 IKV 310
>ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinifera]
gi|296082698|emb|CBI21703.3| unnamed protein product
[Vitis vinifera]
Length = 857
Score = 227 bits (578), Expect(2) = 1e-64
Identities = 106/132 (80%), Positives = 111/132 (84%)
Frame = -3
Query: 398 PSSGEGQKWTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYMS 219
PSSGEGQKWTTLVHNGVIFPPPYKPHG+KMLYKGKPVDLTPEQEEVA M+AVMLDTDYM
Sbjct: 308 PSSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMQ 367
Query: 218 KQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXXX 39
K++FKENF DWRKILGKNHVIQ L+DCDFTPIYEWHQ EKEKKKQMST
Sbjct: 368 KEKFKENFMADWRKILGKNHVIQRLDDCDFTPIYEWHQEEKEKKKQMSTEEKKTLKEEKL 427
Query: 38 XXXXKYMWAIVD 3
KYMWAIVD
Sbjct: 428 KLEEKYMWAIVD 439
Score = 48.9 bits (115), Expect(2) = 1e-64
Identities = 49/119 (41%), Positives = 62/119 (52%), Gaps = 22/119 (18%)
Frame = -1
Query: 772 PLESRFQLKSNDGATTSKSYDKVQKNGSA-----STTILS-KRPLCKVKYTAQAS--VKK 617
PL S+FQLKS++ KV +NG S T+L+ KRPL V + S VKK
Sbjct: 162 PLSSKFQLKSDEKKPLPL---KVNQNGGTDKRDKSPTVLNKKRPLDGVNSSLGQSSLVKK 218
Query: 616 PRIS----------DASVKAETKA--DDGDHVPTSQRIKKY-ATSANK-LSTAVKATKV 482
P+IS A+ KAE K DD D +P SQR+KK A+S NK + K TKV
Sbjct: 219 PKISGQSAQPFKVTHATAKAEPKVEDDDDDDMPISQRMKKSGASSGNKPVPAKQKVTKV 277
>dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa]
Length = 926
Score = 211 bits (538), Expect(2) = 2e-64
Identities = 96/132 (72%), Positives = 109/132 (82%)
Frame = -3
Query: 398 PSSGEGQKWTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYMS 219
P SGEGQKWTTLVHNGV+FPPPYKPHG+KMLYK +P+ LTPEQEEVA M+A MLDTDYM+
Sbjct: 375 PGSGEGQKWTTLVHNGVMFPPPYKPHGVKMLYKRQPLTLTPEQEEVATMFAAMLDTDYMN 434
Query: 218 KQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXXX 39
K +FKENF++DW+KILGKNH IQNLEDCDF PIYEWHQ+E+EKKKQM+T
Sbjct: 435 KPRFKENFFSDWKKILGKNHTIQNLEDCDFGPIYEWHQQEREKKKQMTTEEKKALKDERL 494
Query: 38 XXXXKYMWAIVD 3
KYMWAIVD
Sbjct: 495 QLEEKYMWAIVD 506
Score = 63.5 bits (153), Expect(2) = 2e-64
Identities = 60/178 (33%), Positives = 79/178 (44%), Gaps = 52/178 (29%)
Frame = -1
Query: 871 SPNGQSSSAHKVKTATSSRASPAVSPL-GSPKASPLESRFQLKSNDGATTSKSYD----- 710
S G+S+ A+K + S P V S PL RF KS+ G +TSKSYD
Sbjct: 164 SSKGKSNHANKEGGDSCSIRRPVVEESEDSEDEKPLSRRFPSKSSLGESTSKSYDSDEKK 223
Query: 709 ----KVQKNGSAS--------TTILSKRPLCKVKYTAQASVKKPRISD---------ASV 593
KVQ+NGSAS ++ +KR +VK Q+S+KKP++S A+V
Sbjct: 224 PLAAKVQQNGSASRDGPMNKSASLSNKRAPGEVKSLNQSSLKKPKLSSPITSISNKQAAV 283
Query: 592 KAETKADDGD-------------------------HVPTSQRIKKYATSANKLSTAVK 494
K E KA+D D + P SQRIKK S +K S VK
Sbjct: 284 KPEPKAEDDDDNIPLSQRGKKSQTAASKPKDEDDDNAPISQRIKKSPASVSKSSAPVK 341
>gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
gi|508720293|gb|EOY12190.1| DNA topoisomerase I alpha
isoform 1 [Theobroma cacao]
Length = 904
Score = 200 bits (508), Expect(2) = 2e-64
Identities = 93/133 (69%), Positives = 106/133 (79%), Gaps = 1/133 (0%)
Frame = -3
Query: 398 PSSGEGQK-WTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYM 222
PSSG+GQK W+TLVHNGVIFP PY PHG+KMLY G+PVDLTPEQEEVA M+AVM DTDYM
Sbjct: 353 PSSGDGQKKWSTLVHNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEEVATMFAVMKDTDYM 412
Query: 221 SKQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXX 42
SK QFK+NFW DW K+LGKNH I++L+ CDFTPIYEWH +EKEKKKQMS+
Sbjct: 413 SKTQFKKNFWEDWSKLLGKNHTIKDLDRCDFTPIYEWHLQEKEKKKQMSSEEKKALKEEK 472
Query: 41 XXXXXKYMWAIVD 3
K+MWAIVD
Sbjct: 473 LKQEEKFMWAIVD 485
Score = 75.1 bits (183), Expect(2) = 2e-64
Identities = 55/153 (35%), Positives = 78/153 (50%), Gaps = 26/153 (16%)
Frame = -1
Query: 862 GQSSSAHKVKTATSSRASPAVSPLGSPKASPLESRFQLKSNDGATTSKSYD--------- 710
G S+SA + VS +PL +RF +KSN G ++S+ +D
Sbjct: 172 GASTSAPAQSRRLVPKTEVKVSAEDPDDEAPLSARFNVKSNTGTSSSRLHDCDEKKPLAS 231
Query: 709 KVQKNGSA-------STTILSKRPLCKVKYTAQASVKKPRISDA---------SVKAETK 578
K+Q+NGS S+T+ KRPL K + +S KKP+ SDA +VKAE
Sbjct: 232 KIQQNGSIMKGKQQNSSTLSGKRPLDKGNSSDHSSAKKPKTSDAPTTMKTKQVTVKAEKA 291
Query: 577 ADDGDHVPTSQRIKKYATSANKLST-AVKATKV 482
+D DH+P +QR+KK S +KLS+ K TKV
Sbjct: 292 DEDDDHMPIAQRMKKSTASNSKLSSMKQKTTKV 324
Score = 62.4 bits (150), Expect = 6e-07
Identities = 50/132 (37%), Positives = 65/132 (49%)
Frame = -1
Query: 907 DRRVAGQVSDVRSPNGQSSSAHKVKTATSSRASPAVSPLGSPKASPLESRFQLKSNDGAT 728
D + QVSDVRSPNGQSS+A K K+ +SS++ P SP+ SPKAS S+ A
Sbjct: 50 DGQSGRQVSDVRSPNGQSSNAPKNKSISSSKSPPVKSPILSPKAS--------TSSTKAL 101
Query: 727 TSKSYDKVQKNGSASTTILSKRPLCKVKYTAQASVKKPRISDASVKAETKADDGDHVPTS 548
KS V S S SK+ L + TA + P I + DD D +P S
Sbjct: 102 PVKS-PVVNFKASTSLNDQSKQALKQNMTTAVKEGRSP-IKGTTEPNSDDDDDDDSLPLS 159
Query: 547 QRIKKYATSANK 512
R+K + NK
Sbjct: 160 ARLKGISNQGNK 171
>gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma cacao]
gi|508720296|gb|EOY12193.1| DNA topoisomerase I alpha
isoform 3 [Theobroma cacao]
Length = 836
Score = 200 bits (508), Expect(2) = 2e-64
Identities = 93/133 (69%), Positives = 106/133 (79%), Gaps = 1/133 (0%)
Frame = -3
Query: 398 PSSGEGQK-WTTLVHNGVIFPPPYKPHGIKMLYKGKPVDLTPEQEEVAKMYAVMLDTDYM 222
PSSG+GQK W+TLVHNGVIFP PY PHG+KMLY G+PVDLTPEQEEVA M+AVM DTDYM
Sbjct: 353 PSSGDGQKKWSTLVHNGVIFPSPYTPHGVKMLYDGRPVDLTPEQEEVATMFAVMKDTDYM 412
Query: 221 SKQQFKENFWNDWRKILGKNHVIQNLEDCDFTPIYEWHQREKEKKKQMSTXXXXXXXXXX 42
SK QFK+NFW DW K+LGKNH I++L+ CDFTPIYEWH +EKEKKKQMS+
Sbjct: 413 SKTQFKKNFWEDWSKLLGKNHTIKDLDRCDFTPIYEWHLQEKEKKKQMSSEEKKALKEEK 472
Query: 41 XXXXXKYMWAIVD 3
K+MWAIVD
Sbjct: 473 LKQEEKFMWAIVD 485
Score = 75.1 bits (183), Expect(2) = 2e-64
Identities = 55/153 (35%), Positives = 78/153 (50%), Gaps = 26/153 (16%)
Frame = -1
Query: 862 GQSSSAHKVKTATSSRASPAVSPLGSPKASPLESRFQLKSNDGATTSKSYD--------- 710
G S+SA + VS +PL +RF +KSN G ++S+ +D
Sbjct: 172 GASTSAPAQSRRLVPKTEVKVSAEDPDDEAPLSARFNVKSNTGTSSSRLHDCDEKKPLAS 231
Query: 709 KVQKNGSA-------STTILSKRPLCKVKYTAQASVKKPRISDA---------SVKAETK 578
K+Q+NGS S+T+ KRPL K + +S KKP+ SDA +VKAE
Sbjct: 232 KIQQNGSIMKGKQQNSSTLSGKRPLDKGNSSDHSSAKKPKTSDAPTTMKTKQVTVKAEKA 291
Query: 577 ADDGDHVPTSQRIKKYATSANKLST-AVKATKV 482
+D DH+P +QR+KK S +KLS+ K TKV
Sbjct: 292 DEDDDHMPIAQRMKKSTASNSKLSSMKQKTTKV 324
Score = 62.4 bits (150), Expect = 6e-07
Identities = 50/132 (37%), Positives = 65/132 (49%)
Frame = -1
Query: 907 DRRVAGQVSDVRSPNGQSSSAHKVKTATSSRASPAVSPLGSPKASPLESRFQLKSNDGAT 728
D + QVSDVRSPNGQSS+A K K+ +SS++ P SP+ SPKAS S+ A
Sbjct: 50 DGQSGRQVSDVRSPNGQSSNAPKNKSISSSKSPPVKSPILSPKAS--------TSSTKAL 101
Query: 727 TSKSYDKVQKNGSASTTILSKRPLCKVKYTAQASVKKPRISDASVKAETKADDGDHVPTS 548
KS V S S SK+ L + TA + P I + DD D +P S
Sbjct: 102 PVKS-PVVNFKASTSLNDQSKQALKQNMTTAVKEGRSP-IKGTTEPNSDDDDDDDSLPLS 159
Query: 547 QRIKKYATSANK 512
R+K + NK
Sbjct: 160 ARLKGISNQGNK 171