BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00004853
         (725 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004966848.1| PREDICTED: uncharacterized protein LOC101777...   151   3e-51
gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]     146   6e-46
ref|XP_006343535.1| PREDICTED: uncharacterized protein LOC102578...   180   5e-43
gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza...   133   8e-43
gb|AAG13591.2|AC051633_7 putative gag/pol polyprotein [Oryza sat...   133   8e-43
gb|ABB47941.2| retrotransposon protein, putative, unclassified [...   133   8e-43
gb|EMS54188.1| Putative late blight resistance protein-like prot...   124   7e-42
gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Ja...   150   3e-34
gb|ABA93844.2| retrotransposon protein, putative, unclassified [...   110   2e-32
gb|AEJ07955.1| putative polyprotein [Sorghum propinquum]              143   6e-32
ref|XP_004986808.1| PREDICTED: uncharacterized protein LOC101773...   140   5e-31
gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp...   136   6e-30
gb|AAF99727.1|AC004557_6 F17L21.7 [Arabidopsis thaliana]              112   2e-28
gb|AAO23093.1| putative polyprotein [Oryza sativa Japonica Group...   129   1e-27
gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thal...   111   2e-27
dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]                    111   2e-27
gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis tha...   111   2e-27
dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]                    111   2e-27
dbj|BAK41512.1| C-end truncated polyprotein [Arabidopsis thaliana]    111   2e-27
dbj|BAA87949.1| retrotransposon homolog, partial [Arabidopsis th...   111   2e-27

>ref|XP_004966848.1| PREDICTED: uncharacterized protein LOC101777861 [Setaria italica]
          Length = 2179

 Score =  151 bits (382), Expect(2) = 3e-51
 Identities = 70/171 (40%), Positives = 97/171 (56%)
 Frame = -3

Query: 723  TVEFDPFSFSVKDF*MGKHLMKCESQGELYPITTTTPSDIVQSAFIALAPSLWHARLGHP 544
            ++EFDPF  SVKD      + +C S G+LYP      S          + SLWH RLGH 
Sbjct: 520  SIEFDPFGLSVKDLQTRSVIARCNSTGDLYPFFPAPSSTTAALTTATSSTSLWHRRLGHL 579

Query: 543  GAHVFSSLRKNNFIECSSLPSSHICHVCSLEKHIK*PCVASQSHTVLPFDIIHADLWTSP 364
            G      L  +N I C+   + H+CH C L +H++ P   S S  + PFD+IH DLWTSP
Sbjct: 580  GHAALFQLISSNVISCNKHNTDHVCHACQLGRHVRLPFSVSNSRAIHPFDLIHCDLWTSP 639

Query: 363  VLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDI 211
            V+S  G+KYYL++LDD +++ W F L  KS+ F +   F +Y+  QF+  I
Sbjct: 640  VVSVSGYKYYLVILDDCTHYTWTFPLRLKSETFGVISNFFSYVRTQFDSTI 690



 Score = 77.4 bits (189), Expect(2) = 3e-51
 Identities = 38/67 (56%), Positives = 47/67 (70%)
 Frame = -2

Query: 205 QCDNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNIIRTLLAHASLPT 26
           QCDNG+EFD+     F  THG+ FR+SCP T  QNG+AER + TVNNI+R+LL  ASLP 
Sbjct: 694 QCDNGREFDHSSARTFFLTHGVVFRMSCPYTSQQNGRAERTLRTVNNIVRSLLFQASLPP 753

Query: 25  SF*HHSL 5
            +   SL
Sbjct: 754 VYWADSL 760


>gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1480

 Score =  146 bits (369), Expect(2) = 6e-46
 Identities = 73/169 (43%), Positives = 102/169 (60%)
 Frame = -3

Query: 717 EFDPFSFSVKDF*MGKHLMKCESQGELYPITTTTPSDIVQSAFIALAPSLWHARLGHPGA 538
           EFD F FSVKD    + +++C S+G+LY + TT P+ I   +F+A + +LWH RLGHP  
Sbjct: 441 EFDEFGFSVKDLPTRRVILRCNSRGDLYTLPTTVPA-ITAHSFLAKSSTLWHHRLGHPSP 499

Query: 537 HVFSSLRKNNFIECSSLPSSHICHVCSLEKHIK*PCVASQSHTVLPFDIIHADLWTSPVL 358
               +L K   + C+   ++ +CH C L KH +     S S T  PF+++H D+WTSPVL
Sbjct: 500 AAVQTLHKLAILSCTR-SNNKLCHACHLGKHTRLSFSKSSSSTSSPFELVHCDVWTSPVL 558

Query: 357 SSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDI 211
           S  G KYYL++LDD+++F W F L  KS V    L F AY+  QF   I
Sbjct: 559 SLSGFKYYLVVLDDFTHFCWTFPLRHKSDVHQHLLEFVAYVKTQFSLPI 607



 Score = 64.7 bits (156), Expect(2) = 6e-46
 Identities = 33/63 (52%), Positives = 41/63 (65%)
 Frame = -2

Query: 208 FQCDNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNIIRTLLAHASLP 29
           FQ DNG +F N    +F  + G+  RLSCP T  QNGKAER + T+N  IRTLL  AS+P
Sbjct: 610 FQADNGTKFVNHATTSFFASRGIVLRLSCPYTSPQNGKAERVLRTINKSIRTLLIQASMP 669

Query: 28  TSF 20
            S+
Sbjct: 670 PSY 672


>ref|XP_006343535.1| PREDICTED: uncharacterized protein LOC102578284 [Solanum tuberosum]
          Length = 614

 Score =  180 bits (456), Expect = 5e-43
 Identities = 88/153 (57%), Positives = 107/153 (69%)
 Frame = -3

Query: 723 TVEFDPFSFSVKDF*MGKHLMKCESQGELYPITTTTPSDIVQSAFIALAPSLWHARLGHP 544
           +VEFDPF F VKDF  G+ +M+CES+G+LYPIT         S F ALAPSLWH RLGHP
Sbjct: 462 SVEFDPFGFPVKDFQTGRPVMRCESRGKLYPITNPRA---FPSTFAALAPSLWHDRLGHP 518

Query: 543 GAHVFSSLRKNNFIECSSLPSSHICHVCSLEKHIK*PCVASQSHTVLPFDIIHADLWTSP 364
           GA V +SLRKN  IEC+ +  S ICH C L KH+K    AS S T++PFDIIH+DLWTS 
Sbjct: 519 GAPVLNSLRKNKLIECNQIKDSRICHSCPLGKHVKLSFYASNSSTIMPFDIIHSDLWTSL 578

Query: 363 VLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVF 265
           VLSS GH+YY+L +DD+S F   F   K  ++F
Sbjct: 579 VLSSSGHRYYVLFVDDHSKFCGHFLYRKNHKLF 611


>gb|AAM08751.1|AC025098_18 Putative copia-type polyprotein [Oryza sativa Japonica Group]
          Length = 1803

 Score =  133 bits (335), Expect(2) = 8e-43
 Identities = 62/172 (36%), Positives = 104/172 (60%)
 Frame = -3

Query: 723 TVEFDPFSFSVKDF*MGKHLMKCESQGELYPITTTTPSDIVQSAFIALAPSLWHARLGHP 544
           ++EFDP  FS+KD       ++C+S G+LYP+   +P  +  SA  + +   WH RLGHP
Sbjct: 450 SIEFDPTGFSIKDLQTQVVKLRCDSPGDLYPLRLPSPHAL--SATSSPSVEHWHLRLGHP 507

Query: 543 GAHVFSSLRKNNFIECSSLPSSHICHVCSLEKHIK*PCVASQSHTVLPFDIIHADLWTSP 364
           G+   S +  +   +C+   + H C  C +  +++ P  +S S T+ PF ++H D+WTSP
Sbjct: 508 GSASLSKVLGSFDFQCNK-SAPHHCSACHVGTNVRLPFHSSSSQTLFPFQLVHTDVWTSP 566

Query: 363 VLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDIL 208
           + S+ G+KYY++ LDD+++++W F +  KS+VF    +F AY + QF   +L
Sbjct: 567 IYSNSGYKYYVVFLDDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVL 618



 Score = 67.4 bits (163), Expect(2) = 8e-43
 Identities = 32/70 (45%), Positives = 45/70 (64%)
 Frame = -2

Query: 211 SFQCDNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNIIRTLLAHASL 32
           + Q DNGKE+D+    +    HG   RLSCP +  QNGKAER + T+N+ +RT+L H++ 
Sbjct: 619 ALQTDNGKEYDSYALRSLLSLHGAVLRLSCPYSSQQNGKAERILRTINDCVRTMLVHSAA 678

Query: 31  PTSF*HHSLQ 2
           P SF   +LQ
Sbjct: 679 PLSFWAEALQ 688


>gb|AAG13591.2|AC051633_7 putative gag/pol polyprotein [Oryza sativa Japonica Group]
          Length = 1417

 Score =  133 bits (335), Expect(2) = 8e-43
 Identities = 62/172 (36%), Positives = 104/172 (60%)
 Frame = -3

Query: 723 TVEFDPFSFSVKDF*MGKHLMKCESQGELYPITTTTPSDIVQSAFIALAPSLWHARLGHP 544
           ++EFDP  FS+KD       ++C+S G+LYP+   +P  +  SA  + +   WH RLGHP
Sbjct: 450 SIEFDPTGFSIKDLQTQVVKLRCDSPGDLYPLRLPSPHAL--SATSSPSVEHWHLRLGHP 507

Query: 543 GAHVFSSLRKNNFIECSSLPSSHICHVCSLEKHIK*PCVASQSHTVLPFDIIHADLWTSP 364
           G+   S +  +   +C+   + H C  C +  +++ P  +S S T+ PF ++H D+WTSP
Sbjct: 508 GSASLSKVLGSFDFQCNK-SAPHHCSACHVGTNVRLPFHSSSSQTLFPFQLVHTDVWTSP 566

Query: 363 VLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDIL 208
           + S+ G+KYY++ LDD+++++W F +  KS+VF    +F AY + QF   +L
Sbjct: 567 IYSNSGYKYYVVFLDDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVL 618



 Score = 67.4 bits (163), Expect(2) = 8e-43
 Identities = 32/70 (45%), Positives = 45/70 (64%)
 Frame = -2

Query: 211 SFQCDNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNIIRTLLAHASL 32
           + Q DNGKE+D+    +    HG   RLSCP +  QNGKAER + T+N+ +RT+L H++ 
Sbjct: 619 ALQTDNGKEYDSYALRSLLSLHGAVLRLSCPYSSQQNGKAERILRTINDYVRTMLVHSAA 678

Query: 31  PTSF*HHSLQ 2
           P SF   +LQ
Sbjct: 679 PLSFWAEALQ 688


>gb|ABB47941.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1414

 Score =  133 bits (335), Expect(2) = 8e-43
 Identities = 62/172 (36%), Positives = 104/172 (60%)
 Frame = -3

Query: 723 TVEFDPFSFSVKDF*MGKHLMKCESQGELYPITTTTPSDIVQSAFIALAPSLWHARLGHP 544
           ++EFDP  FS+KD       ++C+S G+LYP+   +P  +  SA  + +   WH RLGHP
Sbjct: 450 SIEFDPTGFSIKDLQTQVVKLRCDSPGDLYPLRLPSPHAL--SATSSPSVEHWHLRLGHP 507

Query: 543 GAHVFSSLRKNNFIECSSLPSSHICHVCSLEKHIK*PCVASQSHTVLPFDIIHADLWTSP 364
           G+   S +  +   +C+   + H C  C +  +++ P  +S S T+ PF ++H D+WTSP
Sbjct: 508 GSASLSKVLGSFDFQCNK-SAPHHCSACHVGTNVRLPFHSSSSQTLFPFQLVHTDVWTSP 566

Query: 363 VLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDIL 208
           + S+ G+KYY++ LDD+++++W F +  KS+VF    +F AY + QF   +L
Sbjct: 567 IYSNSGYKYYVVFLDDFTHYIWTFPVRNKSEVFHTVRSFFAYAHTQFGLPVL 618



 Score = 67.4 bits (163), Expect(2) = 8e-43
 Identities = 32/70 (45%), Positives = 45/70 (64%)
 Frame = -2

Query: 211 SFQCDNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNIIRTLLAHASL 32
           + Q DNGKE+D+    +    HG   RLSCP +  QNGKAER + T+N+ +RT+L H++ 
Sbjct: 619 ALQTDNGKEYDSYALRSLLSLHGAVLRLSCPYSSQQNGKAERILRTINDYVRTMLVHSAA 678

Query: 31  PTSF*HHSLQ 2
           P SF   +LQ
Sbjct: 679 PLSFWAEALQ 688


>gb|EMS54188.1| Putative late blight resistance protein-like protein R1B-14 [Triticum
            urartu]
          Length = 770

 Score =  124 bits (312), Expect(2) = 7e-42
 Identities = 65/176 (36%), Positives = 97/176 (55%), Gaps = 3/176 (1%)
 Frame = -3

Query: 723  TVEFDPFSFSVKDF*MGKHLMKCESQGELYPITTTTPSDIVQSAFIALAPSLWHARLGHP 544
            ++EFDPF  SVKD      + +  S G+LY +   + S    S  +  +  LWH RLGHP
Sbjct: 509  SIEFDPFGLSVKDLQTKMEIARFNSSGDLYTVDNASSSS---SHAMLASVGLWHRRLGHP 565

Query: 543  GAHVFSSLRKN---NFIECSSLPSSHICHVCSLEKHIK*PCVASQSHTVLPFDIIHADLW 373
             +   ++L +     +   S  PS  +CH C + KH+  P   S + +  PF+++H DLW
Sbjct: 566  HSGTTTTLLREFQLPYDRDSHDPS--LCHACQMGKHVHLPFGTSSTRSSFPFELLHCDLW 623

Query: 372  TSPVLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDILF 205
            TSP  S  G KYYL+LL+DYS+F+  F +  KS V  +F+ F+ Y++  F   I F
Sbjct: 624  TSPTPSVFGFKYYLVLLNDYSHFICTFPIRAKSDVHALFVNFQRYVFTHFSLPIRF 679



 Score = 73.2 bits (178), Expect(2) = 7e-42
 Identities = 35/62 (56%), Positives = 44/62 (70%)
 Frame = -2

Query: 205 QCDNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNIIRTLLAHASLPT 26
           QCDNG+EFDN +   F   HG+  R SCP T  QNGKAER + T N+IIRTLL  +S+P+
Sbjct: 681 QCDNGREFDNSRNRAFFLAHGILLRFSCPYTSPQNGKAERSLRTNNDIIRTLLIQSSMPS 740

Query: 25  SF 20
           S+
Sbjct: 741 SY 742


>gb|AAM74347.1|AC115686_14 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1250

 Score =  150 bits (380), Expect = 3e-34
 Identities = 73/171 (42%), Positives = 105/171 (61%)
 Frame = -3

Query: 723 TVEFDPFSFSVKDF*MGKHLMKCESQGELYPITTTTPSDIVQSAFIALAPSLWHARLGHP 544
           ++EFD F FSVK     + +++C S+G+LY +    P+ I   +F+A + +LWH RLGHP
Sbjct: 440 SIEFDEFGFSVKGLRTRRVILRCNSRGDLYTLPIAAPA-IAAHSFLAQSSTLWHRRLGHP 498

Query: 543 GAHVFSSLRKNNFIECSSLPSSHICHVCSLEKHIK*PCVASQSHTVLPFDIIHADLWTSP 364
            +    +L K   + C+ +  S +CH C L KH + P   SQS T  PF+++H D+WTSP
Sbjct: 499 SSAAIQTLHKLAILPCTKIDHS-LCHACKLGKHTRLPFSRSQSSTSSPFELVHCDVWTSP 557

Query: 363 VLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDI 211
           VLS+ G KYYL++LDD+S+F W F L  KS V    + F AY+  QF   I
Sbjct: 558 VLSTSGFKYYLVVLDDFSHFCWTFPLRHKSDVHQHIVEFVAYVTTQFGSSI 608


>gb|ABA93844.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1099

 Score =  110 bits (275), Expect(2) = 2e-32
 Identities = 62/175 (35%), Positives = 92/175 (52%), Gaps = 9/175 (5%)
 Frame = -3

Query: 708 PFSFSVKDF*MGKHLMKCESQGELYPITTTTPSDIVQSAFIALA-------PSLWHARLG 550
           P  +  +D+     +++C S G+LYP     P+D   SA  A           LWH RLG
Sbjct: 448 PSQWDPQDYPTRTEIVRCNSSGDLYPF----PADAFSSAASARTFTATESTTDLWHRRLG 503

Query: 549 HPGAHVFSSLRKNNFIECSSLP--SSHICHVCSLEKHIK*PCVASQSHTVLPFDIIHADL 376
           H G    + L + + I    LP  ++ +CH   L +H++ P  +S +     F+++H DL
Sbjct: 504 HIGHDALTRLSQASVIP---LPRGAAPVCHAYQLGRHVRLPFTSSFTRASAKFELVHCDL 560

Query: 375 WTSPVLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDI 211
           WTSPV S  G KYYL++LDDYS+++W F L  KS+ F     F A++  QF   I
Sbjct: 561 WTSPVPSVYGFKYYLVILDDYSHYVWTFPLRLKSETFDTISHFFAFVKTQFSTTI 615



 Score = 55.8 bits (133), Expect(2) = 2e-32
 Identities = 26/53 (49%), Positives = 36/53 (67%)
 Frame = -2

Query: 220 TGHSFQCDNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNI 62
           T  + QCDNG++FDN     F  T+G+  ++SCP T  QNGKAER + ++NNI
Sbjct: 614 TIRNIQCDNGRKFDNLTARTFFLTNGVHMQMSCPYTSPQNGKAERMLRSINNI 666


>gb|AEJ07955.1| putative polyprotein [Sorghum propinquum]
          Length = 826

 Score =  143 bits (360), Expect = 6e-32
 Identities = 73/184 (39%), Positives = 98/184 (53%)
 Frame = -3

Query: 720  VEFDPFSFSVKDF*MGKHLMKCESQGELYPITTTTPSDIVQSAFIALAPSLWHARLGHPG 541
            +EFDPF  SVKD      + +C S G+LYP      S    +A +A   SLWH RLGH G
Sbjct: 547  IEFDPFGLSVKDLQTRNVIARCNSSGDLYPFFPPATS---ATALLAAPASLWHRRLGHLG 603

Query: 540  AHVFSSLRKNNFIECSSLPSSHICHVCSLEKHIK*PCVASQSHTVLPFDIIHADLWTSPV 361
                S L  ++ I C+     H+CH C L +H + P   S S     FD+IH DLW SP+
Sbjct: 604  REALSQLVSSSAISCNKDDDYHLCHACQLGRHTRLPFSTSTSRATNNFDLIHCDLWASPI 663

Query: 360  LSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDILFSAIMVKSL 181
            +S  G+KYYL++LDD S+++W F L  KS  F     F A++  QF          +KS+
Sbjct: 664  VSVSGYKYYLIILDDRSHYIWTFPLRLKSDTFSTVANFFAHVRTQF-------GTTIKSV 716

Query: 180  TMDN 169
              DN
Sbjct: 717  QCDN 720



 Score = 78.2 bits (191), Expect = 3e-12
 Identities = 37/61 (60%), Positives = 45/61 (73%)
 Frame = -2

Query: 211 SFQCDNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNIIRTLLAHASL 32
           S QCDNG+EFDN     F  +HG++ R+SCP T  QNGKAER I T+NNI+R+LL  ASL
Sbjct: 715 SVQCDNGREFDNSMSRTFFLSHGVALRMSCPYTSQQNGKAERSIRTMNNILRSLLFQASL 774

Query: 31  P 29
           P
Sbjct: 775 P 775


>ref|XP_004986808.1| PREDICTED: uncharacterized protein LOC101773259 [Setaria italica]
          Length = 1950

 Score =  140 bits (352), Expect = 5e-31
 Identities = 69/165 (41%), Positives = 96/165 (58%)
 Frame = -3

Query: 717  EFDPFSFSVKDF*MGKHLMKCESQGELYPITTTTPSDIVQSAFIALAPSLWHARLGHPGA 538
            EFD   FSVKD   G+ +++C S G+LY +   TP      AF+A + +LWH RLGHP  
Sbjct: 1079 EFDAHGFSVKDLRTGRVILRCNSDGDLYTMPAGTPV-APSHAFLAASSTLWHQRLGHPAP 1137

Query: 537  HVFSSLRKNNFIECSSLPSSHICHVCSLEKHIK*PCVASQSHTVLPFDIIHADLWTSPVL 358
                 L K + + C+ +  S +CH C L KH + P  +S S T  PF+++H D+WTSP+ 
Sbjct: 1138 AALERLNKIHVVSCNKVDRS-LCHSCQLGKHTRLPFSSSHSITHAPFELVHCDVWTSPIN 1196

Query: 357  SSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQF 223
            S  G  YYL+ LDDYS++ W+F L KKS+V    +   A    QF
Sbjct: 1197 SLSGFSYYLVCLDDYSHYCWVFPLGKKSEVHQHIVELAALAKTQF 1241


>gb|ABW81031.1| LTRGag-pol-polymerase 3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1296

 Score =  136 bits (343), Expect = 6e-30
 Identities = 72/186 (38%), Positives = 99/186 (53%), Gaps = 1/186 (0%)
 Frame = -3

Query: 723 TVEFDPFSFSVKDF*MGKHLMKCESQGELYPITTTT-PSDIVQSAFIALAPSLWHARLGH 547
           T+EFDPF FSVKD      L++C+S G LY +T ++ PS     A       +WH RLGH
Sbjct: 444 TIEFDPFGFSVKDLKTRNKLLRCDSSGPLYSVTPSSYPSSHHALAATTSDSFIWHRRLGH 503

Query: 546 PGAHVFSSLRKNNFIECSSLPSSHICHVCSLEKHIK*PCVASQSHTVLPFDIIHADLWTS 367
           P + + S L  +  I       + +C  C L KH + P   S +     F+I+H+D+WTS
Sbjct: 504 PSSTLLSHLLSSLSISVPKTDLTSLCQACQLGKHTRLPFFNSNTIASSLFEIVHSDIWTS 563

Query: 366 PVLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDILFSAIMVK 187
           PV S  G KYYL+ LD YS+F+W + L +KS     ++ F  Y+  QF R         K
Sbjct: 564 PVPSISGLKYYLIFLDQYSHFVWAYPLHRKSDTLVKYINFSTYVQTQFNRQF-------K 616

Query: 186 SLTMDN 169
           SL  DN
Sbjct: 617 SLQCDN 622



 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 30/64 (46%), Positives = 41/64 (64%)
 Frame = -2

Query: 211 SFQCDNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNIIRTLLAHASL 32
           S QCDN +E+DN  F     +    FR SCP T  QNG+AER + T+NN++RTLL  A++
Sbjct: 617 SLQCDNDREYDNRAFKEHLASTRTVFRFSCPHTSQQNGRAERMLRTINNMVRTLLFQAAI 676

Query: 31  PTSF 20
           P  +
Sbjct: 677 PAEY 680


>gb|AAF99727.1|AC004557_6 F17L21.7 [Arabidopsis thaliana]
          Length = 1534

 Score =  112 bits (280), Expect(2) = 2e-28
 Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 3/174 (1%)
 Frame = -3

Query: 723  TVEFDPFSFSVKDF*MGKHLMKCESQGELY--PITTTTPSDIVQSAFIALAPSLWHARLG 550
            +VEF P  F VKD   G  L++  ++ ELY  P+ + TP  +  S         WH+RLG
Sbjct: 506  SVEFFPAHFQVKDLSTGARLLQGRTKDELYEWPVPSNTPISLFASPTPKTTLPSWHSRLG 565

Query: 549  HPGAHVFSSLRKNNFIECSSLPSSHI-CHVCSLEKHIK*PCVASQSHTVLPFDIIHADLW 373
            HP   V  SL     +  S+    H  C  C + K  K P  ++   +  P + +++D+W
Sbjct: 566  HPSPPVLKSLVSQFSLPVSNSSQKHFPCSHCLINKSHKLPFYSNTIISYTPLEYVYSDVW 625

Query: 372  TSPVLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDI 211
            TSPV S    KYYL+L+D Y+ + W++ L +KSQV   F+ F+A + N+F+  I
Sbjct: 626  TSPVTSVDNFKYYLILVDHYTRYTWLYPLKQKSQVRETFVAFKALVENRFQTKI 679



 Score = 40.4 bits (93), Expect(2) = 2e-28
 Identities = 27/60 (45%), Positives = 31/60 (51%)
 Frame = -2

Query: 199 DNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNIIRTLLAHASLPTSF 20
           DNG EF       F  THG+S   S P T   NG AERK   +     TLL  AS+PTS+
Sbjct: 685 DNGGEFI--ALRQFLLTHGISHLTSLPHTPEHNGIAERKHRHILETGLTLLTQASIPTSY 742


>gb|AAO23093.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108709048|gb|ABF96843.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 594

 Score =  129 bits (324), Expect = 1e-27
 Identities = 66/164 (40%), Positives = 98/164 (59%)
 Frame = -3

Query: 723 TVEFDPFSFSVKDF*MGKHLMKCESQGELYPITTTTPSDIVQSAFIALAPSLWHARLGHP 544
           ++EFD F FS+KD    + +++C S GELY +    PS I     +A + +LWH RLGHP
Sbjct: 432 SIEFDEFGFSIKDPQTRRVILRCNSHGELYTLPAAAPS-IAAHYNLATSSTLWHRRLGHP 490

Query: 543 GAHVFSSLRKNNFIECSSLPSSHICHVCSLEKHIK*PCVASQSHTVLPFDIIHADLWTSP 364
           G    ++L+  + I  S   +S +CH C L KH + P   S S T  PF+++H D+WTS 
Sbjct: 491 GPTAVTTLQHLSAIPRSKTNNS-LCHACQLGKHTRLPFNKSTSSTSSPFELVHCDVWTSL 549

Query: 363 VLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIY 232
           V+S  G K+YL+L+DD+++F W F L +KS V    + F  Y +
Sbjct: 550 VMSISGFKFYLVLVDDFTHFCWTFPLCQKSDVHRHIVEFVEYAH 593


>gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thaliana]
           gi|18265373|dbj|BAB84015.1| polyprotein [Arabidopsis
           thaliana]
          Length = 1466

 Score =  111 bits (278), Expect(2) = 2e-27
 Identities = 62/176 (35%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
 Frame = -3

Query: 723 TVEFDPFSFSVKDF*MGKHLMKCESQGELY--PITTTTPSDIVQSAFIALAPSLWHARLG 550
           +VEF P SF VKD   G  L++ +++ ELY  PI ++ P  +  S       S WHARLG
Sbjct: 413 SVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLG 472

Query: 549 HPGAHVFSSLRKNNFIECSSLPSSH---ICHVCSLEKHIK*PCVASQSHTVLPFDIIHAD 379
           HP   + +S+  N  +  S L  SH    C  C + K  K P   S  ++  P + I++D
Sbjct: 473 HPAPSILNSVISNYSL--SVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSD 530

Query: 378 LWTSPVLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDI 211
           +W+SP+LS   ++YY++ +D ++ + W++ L +KSQV   F+TF+  + N+F+  I
Sbjct: 531 VWSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRI 586



 Score = 37.7 bits (86), Expect(2) = 2e-27
 Identities = 24/64 (37%), Positives = 33/64 (51%)
 Frame = -2

Query: 211 SFQCDNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNIIRTLLAHASL 32
           +F  DNG EF       +   HG+S   S P T   NG +ERK   +     TLL+HAS+
Sbjct: 588 TFYSDNGGEFV--ALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASI 645

Query: 31  PTSF 20
           P ++
Sbjct: 646 PKTY 649


>dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  111 bits (278), Expect(2) = 2e-27
 Identities = 62/176 (35%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
 Frame = -3

Query: 723 TVEFDPFSFSVKDF*MGKHLMKCESQGELY--PITTTTPSDIVQSAFIALAPSLWHARLG 550
           +VEF P SF VKD   G  L++ +++ ELY  PI ++ P  +  S       S WHARLG
Sbjct: 413 SVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLG 472

Query: 549 HPGAHVFSSLRKNNFIECSSLPSSH---ICHVCSLEKHIK*PCVASQSHTVLPFDIIHAD 379
           HP   + +S+  N  +  S L  SH    C  C + K  K P   S  ++  P + I++D
Sbjct: 473 HPAPSILNSVISNYSL--SVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSD 530

Query: 378 LWTSPVLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDI 211
           +W+SP+LS   ++YY++ +D ++ + W++ L +KSQV   F+TF+  + N+F+  I
Sbjct: 531 VWSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRI 586



 Score = 37.7 bits (86), Expect(2) = 2e-27
 Identities = 24/64 (37%), Positives = 33/64 (51%)
 Frame = -2

Query: 211 SFQCDNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNIIRTLLAHASL 32
           +F  DNG EF       +   HG+S   S P T   NG +ERK   +     TLL+HAS+
Sbjct: 588 TFYSDNGGEFV--ALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASI 645

Query: 31  PTSF 20
           P ++
Sbjct: 646 PKTY 649


>gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis thaliana]
           gi|338746561|dbj|BAK41510.1| polyprotein [Arabidopsis
           thaliana]
          Length = 1466

 Score =  111 bits (278), Expect(2) = 2e-27
 Identities = 62/176 (35%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
 Frame = -3

Query: 723 TVEFDPFSFSVKDF*MGKHLMKCESQGELY--PITTTTPSDIVQSAFIALAPSLWHARLG 550
           +VEF P SF VKD   G  L++ +++ ELY  PI ++ P  +  S       S WHARLG
Sbjct: 413 SVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLG 472

Query: 549 HPGAHVFSSLRKNNFIECSSLPSSH---ICHVCSLEKHIK*PCVASQSHTVLPFDIIHAD 379
           HP   + +S+  N  +  S L  SH    C  C + K  K P   S  ++  P + I++D
Sbjct: 473 HPAPSILNSVISNYSL--SVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSD 530

Query: 378 LWTSPVLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDI 211
           +W+SP+LS   ++YY++ +D ++ + W++ L +KSQV   F+TF+  + N+F+  I
Sbjct: 531 VWSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRI 586



 Score = 37.7 bits (86), Expect(2) = 2e-27
 Identities = 24/64 (37%), Positives = 33/64 (51%)
 Frame = -2

Query: 211 SFQCDNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNIIRTLLAHASL 32
           +F  DNG EF       +   HG+S   S P T   NG +ERK   +     TLL+HAS+
Sbjct: 588 TFYSDNGGEFV--ALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASI 645

Query: 31  PTSF 20
           P ++
Sbjct: 646 PKTY 649


>dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]
          Length = 1431

 Score =  111 bits (278), Expect(2) = 2e-27
 Identities = 62/176 (35%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
 Frame = -3

Query: 723 TVEFDPFSFSVKDF*MGKHLMKCESQGELY--PITTTTPSDIVQSAFIALAPSLWHARLG 550
           +VEF P SF VKD   G  L++ +++ ELY  PI ++ P  +  S       S WHARLG
Sbjct: 378 SVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLG 437

Query: 549 HPGAHVFSSLRKNNFIECSSLPSSH---ICHVCSLEKHIK*PCVASQSHTVLPFDIIHAD 379
           HP   + +S+  N  +  S L  SH    C  C + K  K P   S  ++  P + I++D
Sbjct: 438 HPAPSILNSVISNYSL--SVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSD 495

Query: 378 LWTSPVLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDI 211
           +W+SP+LS   ++YY++ +D ++ + W++ L +KSQV   F+TF+  + N+F+  I
Sbjct: 496 VWSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRI 551



 Score = 37.7 bits (86), Expect(2) = 2e-27
 Identities = 24/64 (37%), Positives = 33/64 (51%)
 Frame = -2

Query: 211 SFQCDNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNIIRTLLAHASL 32
           +F  DNG EF       +   HG+S   S P T   NG +ERK   +     TLL+HAS+
Sbjct: 553 TFYSDNGGEFV--ALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASI 610

Query: 31  PTSF 20
           P ++
Sbjct: 611 PKTY 614


>dbj|BAK41512.1| C-end truncated polyprotein [Arabidopsis thaliana]
          Length = 1048

 Score =  111 bits (278), Expect(2) = 2e-27
 Identities = 62/176 (35%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
 Frame = -3

Query: 723 TVEFDPFSFSVKDF*MGKHLMKCESQGELY--PITTTTPSDIVQSAFIALAPSLWHARLG 550
           +VEF P SF VKD   G  L++ +++ ELY  PI ++ P  +  S       S WHARLG
Sbjct: 408 SVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLG 467

Query: 549 HPGAHVFSSLRKNNFIECSSLPSSH---ICHVCSLEKHIK*PCVASQSHTVLPFDIIHAD 379
           HP   + +S+  N  +  S L  SH    C  C + K  K P   S  ++  P + I++D
Sbjct: 468 HPAPSILNSVISNYSL--SVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSD 525

Query: 378 LWTSPVLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDI 211
           +W+SP+LS   ++YY++ +D ++ + W++ L +KSQV   F+TF+  + N+F+  I
Sbjct: 526 VWSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRI 581



 Score = 37.7 bits (86), Expect(2) = 2e-27
 Identities = 24/64 (37%), Positives = 33/64 (51%)
 Frame = -2

Query: 211 SFQCDNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNIIRTLLAHASL 32
           +F  DNG EF       +   HG+S   S P T   NG +ERK   +     TLL+HAS+
Sbjct: 583 TFYSDNGGEFV--ALREYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASI 640

Query: 31  PTSF 20
           P ++
Sbjct: 641 PKTY 644


>dbj|BAA87949.1| retrotransposon homolog, partial [Arabidopsis thaliana]
          Length = 847

 Score =  111 bits (278), Expect(2) = 2e-27
 Identities = 62/176 (35%), Positives = 100/176 (56%), Gaps = 5/176 (2%)
 Frame = -3

Query: 723 TVEFDPFSFSVKDF*MGKHLMKCESQGELY--PITTTTPSDIVQSAFIALAPSLWHARLG 550
           +VEF P SF VKD   G  L++ +++ ELY  PI ++ P  +  S       S WHARLG
Sbjct: 378 SVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLG 437

Query: 549 HPGAHVFSSLRKNNFIECSSLPSSH---ICHVCSLEKHIK*PCVASQSHTVLPFDIIHAD 379
           HP   + +S+  N  +  S L  SH    C  C + K  K P   S  ++  P + I++D
Sbjct: 438 HPAPSILNSVISNYSL--SVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSD 495

Query: 378 LWTSPVLSSLGHKYYLLLLDDYSNFLWIFSLSKKSQVFFIFLTFRAYIYNQFERDI 211
           +W+SP+LS   ++YY++ +D ++ + W++ L +KSQV   F+TF+  + N+F+  I
Sbjct: 496 VWSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRI 551



 Score = 37.7 bits (86), Expect(2) = 2e-27
 Identities = 24/64 (37%), Positives = 33/64 (51%)
 Frame = -2

Query: 211 SFQCDNGKEFDNGQFLNFCKTHGMSFRLSCP*T*SQNGKAERKIWTVNNIIRTLLAHASL 32
           +F  DNG EF       +   HG+S   S P T   NG +ERK   +     TLL+HAS+
Sbjct: 553 TFYSDNGGEFV--ALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASI 610

Query: 31  PTSF 20
           P ++
Sbjct: 611 PKTY 614