BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00002571
         (646 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004248221.1| PREDICTED: DNA-directed RNA polymerases I, I...   114   2e-23
ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, I...   106   7e-21
tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III ...   105   9e-21
ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases II, ...   104   3e-20
ref|NP_001151371.1| LOC100285004 [Zea mays] gi|297720059|ref|NP_...   103   3e-20
ref|XP_006284887.1| hypothetical protein CARUB_v10006178mg, part...   103   6e-20
gb|EOY26301.1| DNA directed RNA polymerase, 7 kDa subunit [Theob...   101   2e-19
ref|XP_006392763.1| hypothetical protein EUTSA_v10011934mg [Eutr...   101   2e-19
ref|XP_004972669.1| PREDICTED: DNA-directed RNA polymerases I, I...   101   2e-19
ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, I...   101   2e-19
ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp....   101   2e-19
ref|XP_002264322.1| PREDICTED: DNA-directed RNA polymerases I, I...   101   2e-19
ref|XP_003563174.1| PREDICTED: DNA-directed RNA polymerases I, I...   100   3e-19
dbj|BAJ97697.1| predicted protein [Hordeum vulgare subsp. vulgare]    100   3e-19
ref|XP_001784402.1| predicted protein [Physcomitrella patens] gi...   100   3e-19
ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III ...   100   4e-19
gb|ACG30756.1| DNA-directed RNA polymerases I, II, and III 7.3 k...   100   6e-19
ref|NP_198917.1| DNA-directed RNA polymerase NRPB12/NRPD12/NRPE1...    99   1e-18
ref|XP_002973594.1| hypothetical protein SELMODRAFT_173570 [Sela...    99   1e-18
gb|ABK21111.1| unknown [Picea sitchensis]                              99   1e-18

>ref|XP_004248221.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Solanum lycopersicum]
          Length = 52

 Score =  114 bits (285), Expect = 2e-23
 Identities = 52/52 (100%), Positives = 52/52 (100%)
 Frame = +1

Query: 151 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52


>ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Vitis vinifera]
           gi|225468167|ref|XP_002272054.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4 [Vitis
           vinifera] gi|297738145|emb|CBI27346.3| unnamed protein
           product [Vitis vinifera]
          Length = 51

 Score =  106 bits (264), Expect = 7e-21
 Identities = 50/52 (96%), Positives = 50/52 (96%)
 Frame = +1

Query: 151 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           MD QP EPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQP-EPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
           1, partial [Zea mays] gi|414884444|tpg|DAA60458.1| TPA:
           DNA-directed RNA polymerase I, II, and III polypeptide
           isoform 2, partial [Zea mays]
          Length = 100

 Score =  105 bits (263), Expect = 9e-21
 Identities = 48/54 (88%), Positives = 50/54 (92%)
 Frame = +1

Query: 145 SSMDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           S+MD Q  EPVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 47  STMDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 100


>ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           12-like [Glycine max] gi|356560019|ref|XP_003548293.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 12 [Glycine max]
           gi|567912183|ref|XP_006448405.1| hypothetical protein
           CICLE_v10017429mg [Citrus clementina]
           gi|255630274|gb|ACU15492.1| unknown [Glycine max]
           gi|557551016|gb|ESR61645.1| hypothetical protein
           CICLE_v10017429mg [Citrus clementina]
           gi|561025849|gb|ESW24534.1| hypothetical protein
           PHAVU_004G138700g [Phaseolus vulgaris]
          Length = 51

 Score =  104 bits (259), Expect = 3e-20
 Identities = 49/52 (94%), Positives = 49/52 (94%)
 Frame = +1

Query: 151 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           MD QP EPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQP-EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>ref|NP_001151371.1| LOC100285004 [Zea mays] gi|297720059|ref|NP_001172391.1|
           Os01g0530366 [Oryza sativa Japonica Group]
           gi|297723715|ref|NP_001174221.1| Os05g0151800 [Oryza
           sativa Japonica Group] gi|242048352|ref|XP_002461922.1|
           hypothetical protein SORBIDRAFT_02g010660 [Sorghum
           bicolor] gi|242078439|ref|XP_002443988.1| hypothetical
           protein SORBIDRAFT_07g005435 [Sorghum bicolor]
           gi|514726952|ref|XP_004956106.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Setaria italica] gi|195609858|gb|ACG26759.1|
           DNA-directed RNA polymerases I, II, and III 7.3 kDa
           polypeptide [Zea mays] gi|195620974|gb|ACG32317.1|
           DNA-directed RNA polymerases I, II, and III 7.3 kDa
           polypeptide [Zea mays] gi|195645780|gb|ACG42358.1|
           DNA-directed RNA polymerases I, II, and III 7.3 kDa
           polypeptide [Zea mays] gi|195646246|gb|ACG42591.1|
           DNA-directed RNA polymerases I, II, and III 7.3 kDa
           polypeptide [Zea mays] gi|218188380|gb|EEC70807.1|
           hypothetical protein OsI_02267 [Oryza sativa Indica
           Group] gi|222618595|gb|EEE54727.1| hypothetical protein
           OsJ_02072 [Oryza sativa Japonica Group]
           gi|241925299|gb|EER98443.1| hypothetical protein
           SORBIDRAFT_02g010660 [Sorghum bicolor]
           gi|241940338|gb|EES13483.1| hypothetical protein
           SORBIDRAFT_07g005435 [Sorghum bicolor]
           gi|255673311|dbj|BAH91121.1| Os01g0530366 [Oryza sativa
           Japonica Group] gi|255676033|dbj|BAH92949.1|
           Os05g0151800 [Oryza sativa Japonica Group]
          Length = 52

 Score =  103 bits (258), Expect = 3e-20
 Identities = 47/52 (90%), Positives = 48/52 (92%)
 Frame = +1

Query: 151 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           MD Q  EPVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52


>ref|XP_006284887.1| hypothetical protein CARUB_v10006178mg, partial [Capsella rubella]
           gi|482553592|gb|EOA17785.1| hypothetical protein
           CARUB_v10006178mg, partial [Capsella rubella]
          Length = 68

 Score =  103 bits (256), Expect = 6e-20
 Identities = 45/54 (83%), Positives = 50/54 (92%)
 Frame = +1

Query: 145 SSMDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           ++MD    EPV+Y+CGDCGQENTLKPGDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 15  NTMDQPLPEPVTYVCGDCGQENTLKPGDVIQCRECGYRILYKKRTRRVVQYEAR 68


>gb|EOY26301.1| DNA directed RNA polymerase, 7 kDa subunit [Theobroma cacao]
          Length = 51

 Score =  101 bits (252), Expect = 2e-19
 Identities = 48/52 (92%), Positives = 49/52 (94%)
 Frame = +1

Query: 151 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           MD QP EPV+YICGDCGQENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQP-EPVTYICGDCGQENTLKHGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>ref|XP_006392763.1| hypothetical protein EUTSA_v10011934mg [Eutrema salsugineum]
           gi|567131670|ref|XP_006392764.1| hypothetical protein
           EUTSA_v10011934mg [Eutrema salsugineum]
           gi|567131674|ref|XP_006392765.1| hypothetical protein
           EUTSA_v10011934mg [Eutrema salsugineum]
           gi|557089341|gb|ESQ30049.1| hypothetical protein
           EUTSA_v10011934mg [Eutrema salsugineum]
           gi|557089342|gb|ESQ30050.1| hypothetical protein
           EUTSA_v10011934mg [Eutrema salsugineum]
           gi|557089343|gb|ESQ30051.1| hypothetical protein
           EUTSA_v10011934mg [Eutrema salsugineum]
          Length = 51

 Score =  101 bits (251), Expect = 2e-19
 Identities = 46/52 (88%), Positives = 49/52 (94%)
 Frame = +1

Query: 151 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           MD QP EPV+Y+CGDCGQENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1   MDPQP-EPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51


>ref|XP_004972669.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Setaria italica]
          Length = 52

 Score =  101 bits (251), Expect = 2e-19
 Identities = 45/52 (86%), Positives = 47/52 (90%)
 Frame = +1

Query: 151 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           MD Q  EPVSY+CGDCG ENTLKPGDVIQCR+CGYRILYKKRT RIVQYEAR
Sbjct: 1   MDPQQPEPVSYLCGDCGSENTLKPGDVIQCRDCGYRILYKKRTHRIVQYEAR 52


>ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Cucumis sativus]
           gi|449516854|ref|XP_004165461.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Cucumis sativus]
          Length = 51

 Score =  101 bits (251), Expect = 2e-19
 Identities = 48/52 (92%), Positives = 48/52 (92%)
 Frame = +1

Query: 151 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           MD QP EPVSYICGDCG ENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQP-EPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51


>ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297316495|gb|EFH46918.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 52

 Score =  101 bits (251), Expect = 2e-19
 Identities = 44/52 (84%), Positives = 48/52 (92%)
 Frame = +1

Query: 151 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           M+    EPV+Y+CGDCGQENTLKPGDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1   MEPAQPEPVTYVCGDCGQENTLKPGDVIQCRECGYRILYKKRTRRVVQYEAR 52


>ref|XP_002264322.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4 isoform 2 [Vitis vinifera]
           gi|298204812|emb|CBI25645.3| unnamed protein product
           [Vitis vinifera]
          Length = 51

 Score =  101 bits (251), Expect = 2e-19
 Identities = 49/52 (94%), Positives = 49/52 (94%)
 Frame = +1

Query: 151 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           MDSQP EPVSYICGDCGQENTLK GDVIQCRECGY ILYKKRTRRIVQYEAR
Sbjct: 1   MDSQP-EPVSYICGDCGQENTLKLGDVIQCRECGYCILYKKRTRRIVQYEAR 51


>ref|XP_003563174.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC4-like [Brachypodium distachyon]
           gi|357145250|ref|XP_003573577.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC4-like
           [Brachypodium distachyon]
          Length = 52

 Score =  100 bits (250), Expect = 3e-19
 Identities = 46/52 (88%), Positives = 47/52 (90%)
 Frame = +1

Query: 151 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           MD Q  EPVSY+CGDCG ENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQQPEPVSYLCGDCGAENTLKSGDVIQCRECGYRILYKKRTRRIVQYEAR 52


>dbj|BAJ97697.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 52

 Score =  100 bits (250), Expect = 3e-19
 Identities = 46/52 (88%), Positives = 47/52 (90%)
 Frame = +1

Query: 151 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           MD Q  EPVSY+CGDCG ENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQQPEPVSYLCGDCGAENTLKTGDVIQCRECGYRILYKKRTRRIVQYEAR 52


>ref|XP_001784402.1| predicted protein [Physcomitrella patens]
           gi|162664073|gb|EDQ50807.1| predicted protein
           [Physcomitrella patens]
          Length = 56

 Score =  100 bits (250), Expect = 3e-19
 Identities = 44/53 (83%), Positives = 49/53 (92%)
 Frame = +1

Query: 148 SMDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           SM + P EPV+Y+CGDCG +NTLKPGDVIQCRECGYRILYKKRTRRIVQ+EAR
Sbjct: 4   SMSAPPPEPVTYLCGDCGADNTLKPGDVIQCRECGYRILYKKRTRRIVQFEAR 56


>ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
           [Medicago truncatula] gi|355484947|gb|AES66150.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC4 [Medicago truncatula]
          Length = 121

 Score =  100 bits (249), Expect = 4e-19
 Identities = 51/63 (80%), Positives = 53/63 (84%), Gaps = 1/63 (1%)
 Frame = +1

Query: 151 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR*CLKP-MD 327
           MD  P EPVSY+CGDCG ENTLK GDVIQCR+CGYRILYKKRTRRIVQYEAR  LKP MD
Sbjct: 14  MDPLP-EPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYEARLLLKPDMD 72

Query: 328 CMP 336
             P
Sbjct: 73  PPP 75



 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 28/48 (58%), Positives = 35/48 (72%)
 Frame = +1

Query: 163 PVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           P +P+ Y+CGDCG E  L    V+QC  C Y+ILYKKRT R++QYEAR
Sbjct: 74  PPQPIRYLCGDCGAETPLYTDGVLQCCVCFYKILYKKRTHRVLQYEAR 121


>gb|ACG30756.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
           [Zea mays]
          Length = 52

 Score = 99.8 bits (247), Expect = 6e-19
 Identities = 46/52 (88%), Positives = 47/52 (90%)
 Frame = +1

Query: 151 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           MD Q  EPVSY+CGDCG ENTLKPGDVIQ RECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDPQQPEPVSYLCGDCGAENTLKPGDVIQWRECGYRILYKKRTRRIVQYEAR 52


>ref|NP_198917.1| DNA-directed RNA polymerase NRPB12/NRPD12/NRPE12 [Arabidopsis
           thaliana] gi|75171496|sp|Q9FLM8.1|NRPBC_ARATH RecName:
           Full=DNA-directed RNA polymerases II, IV and V subunit
           12; AltName: Full=DNA-directed RNA Polymerase II subunit
           K gi|9759147|dbj|BAB09703.1| unnamed protein product
           [Arabidopsis thaliana] gi|15028303|gb|AAK76628.1|
           unknown protein [Arabidopsis thaliana]
           gi|19310615|gb|AAL85038.1| unknown protein [Arabidopsis
           thaliana] gi|21618239|gb|AAM67289.1| DNA directed RNA
           polymerase II polypeptide K [Arabidopsis thaliana]
           gi|332007242|gb|AED94625.1| DNA-directed RNA polymerase
           NRPB12/NRPD12/NRPE12 [Arabidopsis thaliana]
          Length = 51

 Score = 99.0 bits (245), Expect = 1e-18
 Identities = 45/52 (86%), Positives = 48/52 (92%)
 Frame = +1

Query: 151 MDSQPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           MD  P EPV+Y+CGDCGQENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1   MDPAP-EPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51


>ref|XP_002973594.1| hypothetical protein SELMODRAFT_173570 [Selaginella moellendorffii]
           gi|300158632|gb|EFJ25254.1| hypothetical protein
           SELMODRAFT_173570 [Selaginella moellendorffii]
          Length = 67

 Score = 99.0 bits (245), Expect = 1e-18
 Identities = 42/48 (87%), Positives = 47/48 (97%)
 Frame = +1

Query: 163 PVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           P+EPV+Y+CGDCG +N+LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 20  PIEPVTYMCGDCGTDNSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 67


>gb|ABK21111.1| unknown [Picea sitchensis]
          Length = 53

 Score = 99.0 bits (245), Expect = 1e-18
 Identities = 47/53 (88%), Positives = 48/53 (90%), Gaps = 1/53 (1%)
 Frame = +1

Query: 151 MDSQPV-EPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 306
           MD   V EPVSYICGDCG EN+LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1   MDGPAVPEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53