BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atropa21_contig00001906
         (5222 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   644   0.0  
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   639   e-180
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   590   e-165
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   573   e-160
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       569   e-159
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...   556   e-155
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   536   e-149
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           536   e-149
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]              527   e-146
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   526   e-146
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   520   e-144
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   513   e-142
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   511   e-141
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   489   e-135
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   474   e-130
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   458   e-125
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   453   e-124
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   449   e-123
emb|CCA66235.1| hypothetical protein [Beta vulgaris subsp. vulga...   446   e-122
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               434   e-118

>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  644 bits (1660), Expect = 0.0
 Identities = 363/1112 (32%), Positives = 583/1112 (52%), Gaps = 20/1112 (1%)
 Frame = +3

Query: 1764 WNIRGLHGSLKQREIRSLVQSENVDILGILESKLDSHGLNRFWATKFQGWEVVDNFGTHP 1943
            WN+RGL+  +K +E++  + S+ + +  + E+++      +        W  ++N+   P
Sbjct: 6    WNVRGLNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGKIQKKFGNRWSWINNYACSP 65

Query: 1944 AGRIFILWNPAKITLQATDIGPQAIHGRVTCKTTSNSFSISFVYGFHSIVARRGLWNSLR 2123
             GRI++ W    + +    +  Q I   V      N F ++ VYG H+I  R+ LW  L 
Sbjct: 66   RGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKMAAVYGLHTIADRKVLWEELY 125

Query: 2124 SYGLSLDHPWLIMGDFNSVMCEEERYNMEPITAYVTKDLVDCCREIGLTDLPSTGCDFTW 2303
            ++      P +++GD+N+V   ++R N   ++   T DL     +  L + P+TG  ++W
Sbjct: 126  NFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRSFVLKAQLLEAPTTGLFYSW 185

Query: 2304 SRSGK-----LSKLDRALVNGPWLQADWNGHAHFRLPGHLSDHSPCIVSIIGEHRPRKRP 2468
            +          S++D++ VN  W+    +    +R  G +SDHSP I ++  +H    RP
Sbjct: 186  NNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAG-ISDHSPLIFNLATQHDEGGRP 244

Query: 2469 FKFFNMWASHPNFGSIVTTHWARNIAGTAQFSLCRKLFGLKAPLNQLNEKDYSHITSRVK 2648
            FKF N  A    F  +V   W          ++  +L  +K  L   + K +S    +V+
Sbjct: 245  FKFLNFLADQNGFVEVVKEAWGSANHRFKMKNIWVRLQAVKRALKSFHSKKFSKAHCQVE 304

Query: 2649 RIKDELEKAQQDALDHPHDELKQE---YVTTLRHKTVAICEAEMSFLRQLAKSDHLKFSD 2819
             ++ +L   Q         EL++E    +  LR  +      + S L+Q ++   L   D
Sbjct: 305  ELRRKLAAVQALPEVSQVSELQEEEKDLIAQLRKWSTI----DESILKQKSRIQWLSLGD 360

Query: 2820 RCTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIAEFITYYKNLLGTKDA-CETIDM 2996
              +KFF + +K    RN I  +    G   T N ++  E   +Y+ LLGT  +  E ID+
Sbjct: 361  SNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSSQLEAIDL 420

Query: 2997 GVIASGNRLTSEQGSNLMRAVTEAEIKQALFDIGDDKAPGPDGFSACFFKKSWHIVGTEF 3176
             V+  G +L++   + L++ +T  EI QAL DI D KAPG DGF++ FFKKSW ++  E 
Sbjct: 421  HVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQEI 480

Query: 3177 CCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKVIAKIIASRIEP 3356
               + +FF  G + K IN T + L+PK        DYRPI+CC+  YK+I+KI+  R++ 
Sbjct: 481  YEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQA 540

Query: 3357 FMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLRKAFDSVDWEFL 3536
             +  ++D AQ+ F+  R + +NI LA EL++GYN + VS RC++KVD+RKA+DSV+W FL
Sbjct: 541  VITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFL 600

Query: 3537 TSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDPLSPYLFVICLE 3716
             S+L  L FP  F+  IM CV T SYS+ +NG     F  QKGLRQGDPLSP+LF + +E
Sbjct: 601  ESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSME 660

Query: 3717 YLSRQLNKSTRAAGFNYHPKCGNLKITHLAFADDLLLMSRGDIASVRTLMGCLDDFQRCS 3896
            YLSR +    +   FN+HPKC  +K+THL FADDLL+ +R D +S+  +M   + F + S
Sbjct: 661  YLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKAS 720

Query: 3897 GLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKLRLVHYDPLVNK 4076
            GL ++  KS +Y  G+ ++E + + +     IG LPFRYLG+PLA++KL      PL++K
Sbjct: 721  GLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDK 780

Query: 4077 VANYINAWTGATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIGLCRNFLW---- 4244
            +      W    LSYAGR +L+K++L  ++ +W  I P+P  +   +   CR FLW    
Sbjct: 781  ITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTGTV 840

Query: 4245 -HSKHPLVSWKDCCLPKTEGGLGFRDMRAWNRALLTKCLWDIHRKKDTLWIQWINQKYLT 4421
              S    V+W     PK+ GGL   +M  WN+A + K LW I  K+D LW++W+N  Y+ 
Sbjct: 841  DTSYKAPVAWDFLQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYI- 899

Query: 4422 SGSSIWTWQVRREDSPLIRRLLEIRDQIVTKTGSQAHAVSMIASWYNDASCTNGTRLAYD 4601
               +I    V    S ++R++ E R +++T+TG    AVS   ++          +  Y 
Sbjct: 900  KRQNIENVTVSSNTSWILRKIFESR-ELLTRTGGW-EAVSNHMNF--------SIKKTYK 949

Query: 4602 FFRHQNQKVPWAKDVWSACVPPKHAFILWLCIKKRLRTKDKVP--YLDIDRACIFCHQHD 4775
              +   + V W + + +    PK  FILWL +  RL T ++V     D+   C  C    
Sbjct: 950  LLQEDYENVVWKRLICNNKATPKSQFILWLAMLNRLATAERVSRWNRDVSPLCKMCGNEI 1009

Query: 4776 ESCPHLFFSCSVSNYLWNRIRRWLGITRAMSTIDSALKFIRKEGRGTGWRARAKRIALGS 4955
            E+  HLFF+C  S  +W ++  +L + +  +   +  +   K+ R T  R +   +    
Sbjct: 1010 ETIQHLFFNCIYSKEIWGKVLLYLNL-QPQADAQAKKELAIKKARSTKDRNKLYVMMFTE 1068

Query: 4956 VVYHIWNERNRITFDGSRLDK----EAILFKI 5039
             VY IW  RN   F G  +++    ++I+F+I
Sbjct: 1069 SVYAIWLLRNAKVFRGIEINQNQAVKSIIFRI 1100


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  639 bits (1648), Expect = e-180
 Identities = 365/1112 (32%), Positives = 589/1112 (52%), Gaps = 19/1112 (1%)
 Frame = +3

Query: 1761 AWNIRGLHGSLKQREIRSLVQSENVDILGILESKLDSHGLNRFWATKFQGWEVVDNFGTH 1940
            +WN+RG++   K +EI++ + S  + +  +LE+++     ++      + W+ ++N+   
Sbjct: 5    SWNVRGMNDPFKIKEIKNFLYSHKIVVCALLETRVREQNASKVQGKLGKDWKWLNNYSHS 64

Query: 1941 PAGRIFILWNPAKITLQATDIGPQAIHGRVTCKTTSNSFSISFVYGFHSIVARRGLWNSL 2120
               RI+I W PA + +  T    Q +   +  +  S+   +  VYG H+I  R+ LW+ L
Sbjct: 65   ARERIWIGWRPAWVNVTLTHTQEQLMVCDI--QDQSHKLKMVAVYGLHTIADRKSLWSGL 122

Query: 2121 RSYGLSLDHPWLIMGDFNSVMCEEERYNMEPITAYVTKDLVDCCREIGLTDLPSTGCDFT 2300
                   D P +I+GDFN+V    +R     +T   T+D      +  L +  ST   ++
Sbjct: 123  LQCVQQQD-PMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFLLQSNLIESRSTWSYYS 181

Query: 2301 WSRSG-----KLSKLDRALVNGPWLQADWNGHAHFRLPGHLSDHSPCIVSIIGEHRPRKR 2465
            WS S       LS++D+A VN  WL         +  PG +SDHSP + +++       +
Sbjct: 182  WSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPG-ISDHSPLLFNLMTGRPQGGK 240

Query: 2466 PFKFFNMWASHPNFGSIVTTHWARNIAGTAQF-SLCRKLFGLKAPLNQLNEKDYSHITSR 2642
            PFKF N+ A    F   V   W  ++ G  +  ++   L  +K  L Q+  +       +
Sbjct: 241  PFKFMNVMAEQGEFLETVEKAW-NSVNGRFKLQAIWLNLKAVKRELKQMKTQKIGLAHEK 299

Query: 2643 VKRIKDELEKAQQDALDHPHDELKQEYVTTLRHKTVAICEAEMSFLRQLAKSDHLKFSDR 2822
            VK ++ +L+  Q    D  H+++ Q    ++ +        E S L+Q ++   L+  D 
Sbjct: 300  VKNLRHQLQDLQSQD-DFDHNDIMQTDAKSIMNDLRHWSHIEDSILQQKSRITWLQQGDT 358

Query: 2823 CTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIAEFITYYKNLLGTK-DACETIDMG 2999
             +K F + VK     N I  +  +DG +    D+V  E + +YK LLGT+      +D+ 
Sbjct: 359  NSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKLLGTRASTLMGVDLN 418

Query: 3000 VIASGNRLTSEQGSNLMRAVTEAEIKQALFDIGDDKAPGPDGFSACFFKKSWHIVGTEFC 3179
             +  G  L+++   +L+R V   EI +AL  IG+DKAPG DGF+A FFKKSW  +  E  
Sbjct: 419  TVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIY 478

Query: 3180 CAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKVIAKIIASRIEPF 3359
              ++EFFN  ++ + IN  ++ L+PK  H   V ++RPI+CC V YK+I+K++ +R++  
Sbjct: 479  AGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGI 538

Query: 3360 MECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLRKAFDSVDWEFLT 3539
            +  +++ AQS F+ GR + +NI LA EL++GY  K +S RC++KVD+RKA+DSV+W FL 
Sbjct: 539  IGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLE 598

Query: 3540 SILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDPLSPYLFVICLEY 3719
            ++L    FP +FV  IMECVST SYSV +NG     F+ +KGLRQGDP+SP+LF +C+EY
Sbjct: 599  TLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEY 658

Query: 3720 LSRQLNKSTRAAGFNYHPKCGNLKITHLAFADDLLLMSRGDIASVRTLMGCLDDFQRCSG 3899
            LSR L +   +  FN+HPKC  L ITHL FADDLL+  R D +S+  +      F   SG
Sbjct: 659  LSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASG 718

Query: 3900 LNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKLRLVHYDPLVNKV 4079
            L ++  KS++Y  G+ ++  +++ +  + ++G LPFRYLG+PL ++KL      PLV  +
Sbjct: 719  LAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMI 778

Query: 4080 ANYINAWTGATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIGLCRNFLW----- 4244
             N    W    LSYAGR +LIKS+L  ++ +W  I P+   +   +  +CR FLW     
Sbjct: 779  TNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTE 838

Query: 4245 HSKHPLVSWKDCCLPKTEGGLGFRDMRAWNRALLTKCLWDIHRKKDTLWIQWINQKYLTS 4424
             +K   V+W     PK+ GG    +M+ WNRA + K LW I  K+D LW++WI+  Y+  
Sbjct: 839  ETKKAPVAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYI-K 897

Query: 4425 GSSIWTWQVRREDSPLIRRLLEIRDQIVTKTGSQAHAVSMIASWYNDASCTN---GTRLA 4595
               I T  +  + + ++R++++ RD +           S I  W  D  C       + A
Sbjct: 898  RQDILTVNISNQTTWILRKIVKARDHL-----------SNIGDW--DEICIGDKFSMKKA 944

Query: 4596 YDFFRHQNQKVPWAKDVWSACVPPKHAFILWLCIKKRLRTKDKVPY--LDIDRACIFCHQ 4769
            Y       ++V W + + +    PK  FILW+ + +RL T D++    +  D     C  
Sbjct: 945  YKKISENGERVRWRRLICNNYATPKSKFILWMMLHERLPTVDRISRWGVQCDLNYRLCRN 1004

Query: 4770 HDESCPHLFFSCSVSNYLWNRIRRWLGITRAMSTIDSALKFIRKEGRGTGWRARAKRIAL 4949
              E+  HLFFSCS S  +W++I   +    +  +    +  +  + R    + + K I +
Sbjct: 1005 DGETIQHLFFSCSYSAGVWSKICYIMRFPNSGVSHQEIISSVCGQAR----KKKGKLIVM 1060

Query: 4950 --GSVVYHIWNERNRITFDGSRLDKEAILFKI 5039
                 VY IW +RN+ TF G   D+  +L KI
Sbjct: 1061 LYTEFVYAIWKQRNKRTFTGENKDENEVLRKI 1092


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  590 bits (1522), Expect = e-165
 Identities = 382/1195 (31%), Positives = 576/1195 (48%), Gaps = 98/1195 (8%)
 Frame = +3

Query: 1761 AWNIRGLHGSLKQREIRSLVQSENVDILGILESKLDSHGLNRFWATKFQGWEVVDNFGTH 1940
            +WN+RG + S+++R  R   +        ILE+++  H   R   + F GW+ V N+   
Sbjct: 6    SWNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVCNYEFA 65

Query: 1941 PAGRIFILWNPAKITLQATDIGPQAIHGRVTCKTTSNSFSISFVYGFHSIVARRGLWNSL 2120
              GRI+++W+PA + +       Q I   V     S  F ++FVY  +    RR LW+ L
Sbjct: 66   ALGRIWVVWDPA-VEVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRRLWSEL 124

Query: 2121 RSYGLSL---DHPWLIMGDFNSVMCEEERYNMEPITAYVTKDLVDCCREIGLTDLPSTGC 2291
                 +    D PW+I+GDFN  +   +            ++  +C     ++DLP  G 
Sbjct: 125  ELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTSNISDLPFRGN 184

Query: 2292 DFTWSRSGK----LSKLDRALVNGPWLQADWNGHAHFRLPGHLSDHSPCIVSIIGEHRPR 2459
             +TW  + +      K+DR LVN  WL A    +  F      SDH P  V+I  +   R
Sbjct: 185  HYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSF-CAMEFSDHCPSCVNISNQSGGR 243

Query: 2460 KRPFKFFNMWASHPNFGSIVTTHWAR-NIAGTAQFSLCRKLFGLKAPLNQLNEKDYSHIT 2636
             +PFK  N    HP F   +   W R    G+A F+L +K   LK  +   N + YS + 
Sbjct: 244  NKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSGLE 303

Query: 2637 SRVKRIKDELEKAQQDALDHPHDELKQEYVTTLRHKTVA-ICEAEMSFLRQLAKSDHLKF 2813
             RV +    L+  Q + L  P   L    +    H++ A +  AE  FL Q ++   LK 
Sbjct: 304  KRVVQAAQNLKTCQNNLLAAPSSYLAG--LEKEAHRSWAELALAEERFLCQKSRVLWLKC 361

Query: 2814 SDRCTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIAEFITYYKNLLGTKDACETID 2993
             D  T FFH M+      N I  +  Q G    + D++    + ++K L G+      I 
Sbjct: 362  GDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSS--HLIS 419

Query: 2994 MGVIASGNRLT----SEQGSNLMRA-VTEAEIKQALFDIGDDKAPGPDGFSACFFKKSWH 3158
               I+  N LT     E    L+ A V+EA+IK   F +  +K+PGPDG+++ FFKK+W 
Sbjct: 420  AEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWS 479

Query: 3159 IVGTEFCCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKVIAKII 3338
            IVG     AV+EFF +G+LL Q N T + +VPK  +   + ++RPISCCN  YKVI+K++
Sbjct: 480  IVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLL 539

Query: 3339 ASRIEPFMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLRKAFDS 3518
            A R+E  +   I  +QSAFV+GR +TEN+ LA EL++G+    +SSR +LKVDLRKAFDS
Sbjct: 540  ARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDS 599

Query: 3519 VDWEFLTSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDPLSPYL 3698
            V W F+   L   N P +FV+ I +C++++S+S+ ++GS+ G+FKG KGLRQGDPLSP L
Sbjct: 600  VGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSL 659

Query: 3699 FVICLEYLSRQLNKSTRAAGFNYHPKCGNLKITHLAFADDLLLMSRGDIASVRTLMGCLD 3878
            FVI +E LSR L          YHPK   ++I+ LAFADDL++   G  +S+R +   L+
Sbjct: 660  FVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLE 719

Query: 3879 DFQRCSGLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKLRLVHY 4058
             F+  SGL  N  KS++YTAG+ + + +D   A  F  G  PFRYLG+PL   KLR   Y
Sbjct: 720  SFKNLSGLEMNTEKSAVYTAGLEDTDKEDTL-AFGFVNGTFPFRYLGLPLLHRKLRRSDY 778

Query: 4059 DPLVNKVANYINAWTGATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIGLCRNF 4238
              L++K+A   N W   TLS+AGR +LI SV+     FWLS   +P      I  +C  F
Sbjct: 779  SQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRF 838

Query: 4239 LWHSK-----HPLVSWKDCCLPKTEGGLGFRDMRAWNRALLTKCLWDIHRKKDTLWIQWI 4403
            LW +         VSW++ CLPK EGGLG R+   WN+ L  + +W +  ++D+LW+ W 
Sbjct: 839  LWGNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWN 898

Query: 4404 NQKYL---------TSGSSIWTWQVRREDSPLIRRLLE---------------------- 4490
            +   L          +    W W+      PL +R L                       
Sbjct: 899  HANRLRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRGAVGNGQLLSYWYDHWSNLGPL 958

Query: 4491 ---IRDQIVTKTGSQAHAVSMIAS----WYNDASCTNGTRLA------------------ 4595
               I       TG    AV   AS    W   ++ T    LA                  
Sbjct: 959  IEAIGASGPQLTGIHESAVVTEASSSTGWILPSARTRNASLANLRSTLLNSPAPSGDRGE 1018

Query: 4596 --YDFFRHQNQKVPWAKDVWSACVPPKHAFILWL-------CIKK-----------RLRT 4715
              Y ++   +    ++  +   C+  +    LW        CI K           RL  
Sbjct: 1019 DTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNFWVAHLNRLPV 1078

Query: 4716 KDKVPYLDIDR--ACIFCHQHDESCPHLFFSCSVSNYLWNRIRRWLGITRAMSTIDSALK 4889
            + +  +   +R   C  C +  E+  HLF  C++ + +W ++    G ++        ++
Sbjct: 1079 RARTTHWSTNRPSLCCVCQRETETRDHLFIHCTLGSLIWQQVLARFGRSQMFREWKDIIE 1138

Query: 4890 F-IRKEGRGTGWRARAKRIALGSVVYHIWNERNRITFDGSRLDKEAILFKIKTNI 5051
            + +  +G  +G     K++A+ + ++HIW ERN            AI  +I  +I
Sbjct: 1139 WMLSNQGSFSG---TLKKLAVQTAIFHIWKERNSRLHSAMSASHTAIFKQIDRSI 1190


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  573 bits (1476), Expect = e-160
 Identities = 370/1175 (31%), Positives = 579/1175 (49%), Gaps = 101/1175 (8%)
 Frame = +3

Query: 1764 WNIRGLHGSLKQREIRSLVQSENVDILGILESKLDSHGLNRFWATKFQGWEVVDNFGTHP 1943
            WN+RGL+ S K   I+  ++  N     ++E+++    +++     F+ W ++ N+  + 
Sbjct: 6    WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNR 65

Query: 1944 AGRIFILWNPAKITLQATDIGPQAIHGRVTCKTTSNSFSISFVYGFHSIVARRGLWNSLR 2123
             GRI++LW    + L       Q +   V  +   + F  SFVY  + +  R+ LW+ L+
Sbjct: 66   RGRIWVLWRK-NVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELK 124

Query: 2124 SYGLS--LDH-PWLIMGDFNSVM--CEEERYNMEPITAYVTKDLVDCCREIGLTDLPSTG 2288
             +  S  + H PW ++GDFN  +   E  +  + P+     +D         LTD+ + G
Sbjct: 125  DHYDSPIIRHKPWTLLGDFNETLDIAEHSQSFVHPMVTPGMRDFQQVINYCSLTDMAAQG 184

Query: 2289 CDFTWSRSGK----LSKLDRALVNGPWLQADWNGHAHFRLPGHLSDHSPCIVSIIGEHRP 2456
              FTW    +    + KLDR L+N  W Q     ++ F   G  SDH  C +S+  E   
Sbjct: 185  PLFTWCNKREHGLIMKKLDRVLINDCWNQTFSQSYSVFEAGG-CSDHLRCRISLNSEAGN 243

Query: 2457 RK---RPFKFFNMWASHPNFGSIVTTHWARN----IAGTAQFSLCRKLFGLKAPLNQLNE 2615
            +    +PFKF N      +F  +V+T+W       ++ +  F   + L GLK  +  +  
Sbjct: 244  KVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLKPKIRSMAR 303

Query: 2616 KDYSHITSRVKRIKDELEKAQQDALDHPHD-ELKQEYVTTLRHKTVAICEAEMSFLRQLA 2792
                +++ +       L   Q   L +P    +++E     R   VAI E +  +L+Q +
Sbjct: 304  DRLGNLSKKANEAYKILCAKQHVNLTNPSSMAMEEENAAYSRWDRVAILEEK--YLKQKS 361

Query: 2793 KSDHLKFSDRCTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIAE---FITYYKNLL 2963
            K    +  D+ TK FH         N I  +   DG + T  D++ AE   F   +  L+
Sbjct: 362  KLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFREFLQLI 421

Query: 2964 GTKDACETIDMGVIASGNRLTSEQGSNLMRAVTEAEIKQALFDIGDDKAPGPDGFSACFF 3143
                   TI         R +     +L+R VT  EI++ LF +  DK+PGPDG+++ FF
Sbjct: 422  PNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFF 481

Query: 3144 KKSWHIVGTEFCCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKV 3323
            K +W I+G EF  AV+ FF  G L K IN TI+AL+PK +    + DYRPISCCNV YKV
Sbjct: 482  KATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKV 541

Query: 3324 IAKIIASRIEPFMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLR 3503
            I+KIIA+R++  +   I   QSAFV+ R + EN+ LA EL+K Y+   +S+RC +K+D+ 
Sbjct: 542  ISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDIS 601

Query: 3504 KAFDSVDWEFLTSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDP 3683
            KAFDSV W FL ++   L FP +F+  I  C++T+S+SV +NG + G+F+  +GLRQG  
Sbjct: 602  KAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCA 661

Query: 3684 LSPYLFVICLEYLSRQLNKSTRAAGFNYHPKCGNLKITHLAFADDLLLMSRGDIASVRTL 3863
            LSPYLFVIC++ LS+ L+K+  A  F YHPKC  + +THL+FADDL+++S G I S+  +
Sbjct: 662  LSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERI 721

Query: 3864 MGCLDDFQRCSGLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKL 4043
            +   D+F + SGL  +  KS++Y AG+S     ++ +   F  G LP RYLG+PL  ++L
Sbjct: 722  IKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRL 781

Query: 4044 RLVHYDPLVNKVANYINAWTGATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIG 4223
                  PL+ +V   I +WT   LSYAGR  LI SVL  +  FWL+   +P     ++  
Sbjct: 782  STTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEK 841

Query: 4224 LCRNFLW-----HSKHPLVSWKDCCLPKTEGGLGFRDMRAWNRALLTKCLWDIHRKKDTL 4388
            +C  FLW     +S    +SW   C PK EGGLG R ++  N     K +W I    ++L
Sbjct: 842  MCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSL 901

Query: 4389 WIQWINQKYLTSGSSIWTWQVRREDSPLIRRLLEIRD----------------------- 4499
            W++W++Q  L + S     Q   + S + ++LL+ R+                       
Sbjct: 902  WVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNW 961

Query: 4500 ----QIVTKTGSQ-------AHAVSMIASWYNDAS----------CTNGTRLAYDFFRHQ 4616
                Q++ +TG +       +  +++  +W N               +  + ++D     
Sbjct: 962  SDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQRRHRNDVYNVIEDALKKSWDTRTET 1021

Query: 4617 NQKVPW------------AKDVW------SACVP-----------PKHAFILWLCIKKRL 4709
              KV W             +D W      SA VP           PK++F  WL    RL
Sbjct: 1022 EDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRL 1081

Query: 4710 RTKDKVPYL--DIDRACIFCHQHDESCPHLFFSCSVSNYLWNRIRRWLGITRAMSTIDSA 4883
             T D++      I   CIFC    E+  HLFF+CS ++ +W  + R +  T+  S   S 
Sbjct: 1082 PTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLARGIFKTQYTSHWQSI 1141

Query: 4884 LKFI-RKEGRGTGWRARAKRIALGSVVYHIWNERN 4985
            ++ I   +     W  R  R    + +Y +W ERN
Sbjct: 1142 IEAITNSQHHRVEWFLR--RYVFQATIYIVWRERN 1174


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  569 bits (1466), Expect = e-159
 Identities = 346/955 (36%), Positives = 504/955 (52%), Gaps = 24/955 (2%)
 Frame = +3

Query: 1764 WNIRGLHGSLKQREIRSLVQSENVDILGILESKLDSHGLNRFWATKFQGWEVVDNFGTHP 1943
            WNIRG +    +   +  V++      G++E+ +      +F      GW  V+N+    
Sbjct: 8    WNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFVENYAFSD 67

Query: 1944 AGRIFILWNPA-KITLQATDIGPQAIHGRVTCKTTSNSFSISFVYGFHSIVARRGLWNSL 2120
             G+I+++W+P+ ++ + A  +  Q I   V    + +   +S VY  + + +R+ LW  +
Sbjct: 68   LGKIWVMWDPSVQVVVVAKSL--QMITCEVLLPGSPSWIIVSVVYAANEVASRKELWIEI 125

Query: 2121 RSY---GLSLDHPWLIMGDFNSVMCEEERYNMEPITAYVT-KDLVDCCREIGLTDLPSTG 2288
             +    G+  D PWL++GDFN V+  +E  N   +   +  +D  DC     L+DL   G
Sbjct: 126  VNMVVSGIIGDRPWLVLGDFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAELSDLRYKG 185

Query: 2289 CDFTWSRSGKLS----KLDRALVNGPWLQADWNGHAHFRLPGHL--SDHSPCIVSIIGEH 2450
              FTW      +    K+DR LVN  W     +    F   G L  SDH  C V +    
Sbjct: 186  NTFTWWNKSHTTPVAKKIDRILVNDSWNALFPSSLGIF---GSLDFSDHVSCGVVLEETS 242

Query: 2451 RPRKRPFKFFNMWASHPNFGSIVTTHW-ARNIAGTAQFSLCRKLFGLKAPLNQLNEKDYS 2627
               KRPFKFFN    + +F ++V  +W   N+ G++ F + +KL  LK P+   +  +YS
Sbjct: 243  IKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLNYS 302

Query: 2628 HITSRVKRIKDELEKAQQDALDHPHDELKQEYVTTLRHKTVAICEAEMSFLRQLAKSDHL 2807
             +  R K   D L   Q   L  P   +   +      K   +  AE SF RQ ++    
Sbjct: 303  ELEKRTKEAHDFLIGCQDRTLADP-TPINASFELEAERKWHILTAAEESFFRQKSRISWF 361

Query: 2808 KFSDRCTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIAEFITYYKNLLGTKD---A 2978
               D  TK+FH M       N I+ +   +G L  S + ++    +Y+ +LLG +     
Sbjct: 362  AEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEVDPYL 421

Query: 2979 CETIDMGVIASGNRLTSEQGSNLMRAVTEAEIKQALFDIGDDKAPGPDGFSACFFKKSWH 3158
             E  DM ++ S  R +  Q   L    +  +I+ ALF +  +K+ GPDGF+A FF  SW 
Sbjct: 422  MEQNDMNLLLS-YRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWS 480

Query: 3159 IVGTEFCCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKVIAKII 3338
            IVG E   A+KEFF++G LLKQ N T I L+PK  +     D+RPISC N  YKVIA+++
Sbjct: 481  IVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLL 540

Query: 3339 ASRIEPFMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLRKAFDS 3518
              R++  +  +I  AQSAF+ GRS+ EN+ LA +L+ GYN   +S R MLKVDL+KAFDS
Sbjct: 541  TDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDS 600

Query: 3519 VDWEFLTSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDPLSPYL 3698
            V WEF+ + L  L  PE+F++ I +C+ST +++V+ING   G FK  KGLRQGDPLSPYL
Sbjct: 601  VRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYL 660

Query: 3699 FVICLEYLSRQLNKSTRAAGFNYHPKCGNLKITHLAFADDLLLMSRGDIASVRTLMGCLD 3878
            FV+ +E  S  L+    +   +YHPK  NL I+HL FADD+++   G   S+  +   LD
Sbjct: 661  FVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLD 720

Query: 3879 DFQRCSGLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKLRLVHY 4058
            DF   SGL  N  KS LY AG+ NQ   +   A  F IG LP RYLG+PL   KLR+  Y
Sbjct: 721  DFASWSGLKVNKDKSHLYLAGL-NQLESNANAAYGFPIGTLPIRYLGLPLMNRKLRIAEY 779

Query: 4059 DPLVNKVANYINAWTGATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIGLCRNF 4238
            +PL+ K+     +W    LS+AGR +LI SV+ G   FW+S   +P     +I  LC  F
Sbjct: 780  EPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRF 839

Query: 4239 LW-----HSKHPLVSWKDCCLPKTEGGLGFRDMRAWNRALLTKCLWDIHRKKDTLWIQWI 4403
            LW      +K   VSW   CLPK+EGGLG R +  WN+ L  + +W +   KD+LW  W 
Sbjct: 840  LWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQ 899

Query: 4404 NQKYLTSGSSIWTWQVRREDSPLIRRLLEIR----DQIVTKTGSQAHAVSMIASW 4556
            +  +L+ G S W  +  + DS   +RLL +R      +V K G+   A     +W
Sbjct: 900  HLHHLSRG-SFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNW 953



 Score = 61.6 bits (148), Expect = 4e-06
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
 Frame = +3

Query: 4632 WAKDVWSACVPPKHAFILWLCIKKRLRTKDKVP---YLDIDRACIFCHQHDESCPHLFFS 4802
            WA  +W     PK+AF +W+    RL T+ ++    ++  D AC+ C    ES  HL   
Sbjct: 1051 WASSIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSD-ACVLCSFASESRDHLLLI 1109

Query: 4803 CSVSNYLWNRI-RRWLGITRAMSTIDSALKFIRKEGRGTGWRARAKRIALGSVVYHIWNE 4979
            C  S  +W  + RR     R  S+    L ++R+           ++I    VVY++W +
Sbjct: 1110 CEFSAQVWRLVFRRICPRQRLFSSWSELLSWVRQSSPEA--PPLLRKIVSQVVVYNLWRQ 1167

Query: 4980 RNRITFDGSRLDKEAILFKI 5039
            RN +  +  RL   A++FK+
Sbjct: 1168 RNNLLHNSLRL-APAVIFKL 1186


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score =  556 bits (1434), Expect = e-155
 Identities = 328/905 (36%), Positives = 495/905 (54%), Gaps = 25/905 (2%)
 Frame = +3

Query: 1764 WNIRGLHGSLKQREIRSLVQSENVDILGILESKLDSHGLNRFWATKFQGWEVVDNFGTHP 1943
            WNIRGL+   +QR +RS + S N+ +   LE+ +     N   A+   GW +  N+    
Sbjct: 6    WNIRGLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSNYCCSE 65

Query: 1944 AGRIFILWNPA--KITLQATDIGPQAIHGRVTCKTTSNSFSISFVYGFHSIVARRGLWNS 2117
             GRI+I+W+P+   +  + TD   Q +   +   +   SF+++FVYG +S + RR LW  
Sbjct: 66   LGRIWIVWDPSISVLVFKRTD---QIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSLWED 122

Query: 2118 L----RSYGLSLDHPWLIMGDFNSVMCEEERY--NMEPITAYVTKDLVDCCREIGLTDLP 2279
            +    R+  LS+  PWL++GDFN +    E Y  N   +     +DL  C R+  L+DLP
Sbjct: 123  ILVLSRTSPLSVT-PWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLSDLP 181

Query: 2280 STGCDFTWSRSGK----LSKLDRALVNGPWLQADWNGHAHFRLPGHLSDHSPCIVSIIGE 2447
            S G  FTWS   +    L KLDRAL NG W     +  A F  PG  SDH+PCI+ I  +
Sbjct: 182  SRGVFFTWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGD-SDHAPCIILIDNQ 240

Query: 2448 HRPRKRPFKFFNMWASHPNFGSIVTTHWARN-IAGTAQFSLCRKLFGLKAPLNQLNEKDY 2624
              P K+ FK+F+  +SHP++ + ++T W  N + G+  FSL + L   K     LN   +
Sbjct: 241  PPPSKKSFKYFSFLSSHPSYLAALSTAWEANTLVGSHMFSLRQHLKVAKLCCRTLNRLRF 300

Query: 2625 SHITSRVKRIKDELEKAQQDALDHPHDEL-KQEYVTTLRHKTVAICEAEMSFLRQLAKSD 2801
            S+I  R  +    LE  Q + L  P D L ++E+V   R + +    A  SF RQ ++  
Sbjct: 301  SNIQQRTAQSLTRLEDIQVELLTSPSDTLFRREHVA--RKQWIFFAAALESFFRQKSRIR 358

Query: 2802 HLKFSDRCTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIAEFITYYKNLLG----- 2966
             L   D  T+FFH  V  +   N I  +   DG    + DQ+    I YY +LLG     
Sbjct: 359  WLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIPSEN 418

Query: 2967 -TKDACETIDMGVIASGNRLTSEQGSNLMRAVTEAEIKQALFDIGDDKAPGPDGFSACFF 3143
             T  + E I  G++    R  S   S L    +E EI Q LF +  +KAPGPDGF   FF
Sbjct: 419  VTPFSVEKIK-GLLPF--RCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFF 475

Query: 3144 KKSWHIVGTEFCCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKV 3323
             ++W IV +    A++EFF +G L +  N T I L+PK +    +  +RP++CC   YKV
Sbjct: 476  IEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKV 535

Query: 3324 IAKIIASRIEPFMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLR 3503
            I +II+ R++ F++  +   Q  F++GR + EN+ LA EL+  +     ++R  L+VD+ 
Sbjct: 536  ITRIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDIS 595

Query: 3504 KAFDSVDWEFLTSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDP 3683
            KA+D+V+WEFL +IL  L+ P  F+  I  C+S++SYS+A NG + G F+G+KG+RQGDP
Sbjct: 596  KAYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDP 655

Query: 3684 LSPYLFVICLEYLSRQLNKSTRAAGFNYHPKCGNLKITHLAFADDLLLMSRGDIASVRTL 3863
            +S +LFV+ ++ LS+ L+       FN HP C    ITHL+FADD+L+ S G  +S+  +
Sbjct: 656  MSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGI 715

Query: 3864 MGCLDDFQRCSGLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKL 4043
            +  LDDF++ SGL  N  K+ L   G +    + + +      G LP RYLG+PL ++K+
Sbjct: 716  LTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKM 775

Query: 4044 RLVHYDPLVNKVANYINAWTGATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIG 4223
            R   Y PLV+++ +   +WT   LS+AGR +L+KSV+     FW S+   P     K+  
Sbjct: 776  RRQDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASVFIFPNQCLQKLEQ 835

Query: 4224 LCRNFLW-----HSKHPLVSWKDCCLPKTEGGLGFRDMRAWNRALLTKCLWDIHRKKDTL 4388
            +C  FLW      ++   +SW   C PK  GGLG + + +WNR L  K +W +     +L
Sbjct: 836  MCNAFLWSGAPNSARGAKISWNIVCSPKEAGGLGLKRLSSWNRILALKLIWLLFTSAGSL 895

Query: 4389 WIQWI 4403
            W+ W+
Sbjct: 896  WVSWV 900


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  536 bits (1380), Expect = e-149
 Identities = 301/805 (37%), Positives = 444/805 (55%), Gaps = 25/805 (3%)
 Frame = +3

Query: 2157 IMGDFNSVMCEEERYNMEPITA-YVTKDLVDCCREIGLTDLPSTGCDFTWSRSGKL---- 2321
            ++GDFN V+  +E  N   +      +D   C  E+ L+DL   G  FTW     +    
Sbjct: 1    MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIA 60

Query: 2322 SKLDRALVNGPWLQADWNGHAHFRLPGHL--SDHSPCIVSIIGEHRPRKRPFKFFNMWAS 2495
             KLDR L N  W     + H  F   G+L  SDH  C V +       KRPFKFFN    
Sbjct: 61   KKLDRILANDSWCNLYPSSHGLF---GNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLK 117

Query: 2496 HPNFGSIVTTHW-ARNIAGTAQFSLCRKLFGLKAPLNQLNEKDYSHITSRVKRIKDELEK 2672
            + +F ++V  +W + N+ G++ + + +KL  +K P+   +  +YS I  R K   + L  
Sbjct: 118  NEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLIT 177

Query: 2673 AQQDALDHPHDELKQEYVTTLRHKTVAICEAEMSFLRQLAKSDHLKFSDRCTKFFHSMVK 2852
             Q   L +P        +   R   +  C AE SF  Q ++       D  T +FH MV 
Sbjct: 178  CQNLTLANPSVSNAALELEAQRKWVLLSC-AEESFFHQRSRVSWFAEGDSNTHYFHRMVD 236

Query: 2853 RNAKRNHIATVTKQDGSLTTSNDQVIAEFITYYKNLLGTKDA---CETIDMGVIASGNRL 3023
                 N I ++   +G L  S   ++   +TYY+ LLG+ ++    E  DM ++ +  R 
Sbjct: 237  SRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLT-YRC 295

Query: 3024 TSEQGSNLMRAVTEAEIKQALFDIGDDKAPGPDGFSACFFKKSWHIVGTEFCCAVKEFFN 3203
            + +Q S L ++ T+ EIK A   +  +K  GPDG+S  FF+ +W I+G E   A+ EFF+
Sbjct: 296  SQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFD 355

Query: 3204 TGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKVIAKIIASRIEPFMECLIDRA 3383
            +G+LLKQ N T + L+PK+S+  T+ ++RPISC N  YKVI+K++ SR++  +  +I  +
Sbjct: 356  SGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHS 415

Query: 3384 QSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLRKAFDSVDWEFLTSILIGLNF 3563
            QSAF+ GRS+ EN+ LA E++ GYN   +S R MLKVDL+KAFDSV WEF+T+ L  L  
Sbjct: 416  QSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAI 475

Query: 3564 PEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDPLSPYLFVICLEYLSRQLNKS 3743
            PE++++ I +C++T S+++++NG+  G F+  KGLRQGDPLSPYLFV+ +E  S+ L   
Sbjct: 476  PERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSR 535

Query: 3744 TRAAGFNYHPKCGNLKITHLAFADDLLLMSRGDIASVRTLMGCLDDFQRCSGLNSNALKS 3923
              +   +YHPK G+L I+HL FADD+++   G  +S+  +   LDDF   SGL  N  KS
Sbjct: 536  YDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKS 595

Query: 3924 SLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKLRLVHYDPLVNKVANYINAWT 4103
             L+ AG+   E +    A  F  G  P RYLG+PL   KLR+  Y PL+ K++  + +W 
Sbjct: 596  QLFQAGLDLSE-RITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWV 654

Query: 4104 GATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIGLCRNFLWHS-----KHPLVS 4268
               LS+AGR +LI SV+ G+  FW+S   +P     KI  LC  FLW       K   VS
Sbjct: 655  SKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVS 714

Query: 4269 WKDCCLPKTEGGLGFRDMRAWNRALLTKCLWDIHRKKDTLWIQWINQKYLTSGS------ 4430
            W DCCLPK+EGGLGFR    WN+ LL + +W +  +  +LW QW     L   S      
Sbjct: 715  WVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNA 774

Query: 4431 ---SIWTWQVRREDSPLIRRLLEIR 4496
                 WTW++     PL  + ++ +
Sbjct: 775  LQTDPWTWKMLLNLRPLAEKFIKAK 799


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  536 bits (1380), Expect = e-149
 Identities = 301/805 (37%), Positives = 444/805 (55%), Gaps = 25/805 (3%)
 Frame = +3

Query: 2157 IMGDFNSVMCEEERYNMEPITA-YVTKDLVDCCREIGLTDLPSTGCDFTWSRSGKL---- 2321
            ++GDFN V+  +E  N   +      +D   C  E+ L+DL   G  FTW     +    
Sbjct: 1    MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIA 60

Query: 2322 SKLDRALVNGPWLQADWNGHAHFRLPGHL--SDHSPCIVSIIGEHRPRKRPFKFFNMWAS 2495
             KLDR L N  W     + H  F   G+L  SDH  C V +       KRPFKFFN    
Sbjct: 61   KKLDRILANDSWCNLYPSSHGLF---GNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLK 117

Query: 2496 HPNFGSIVTTHW-ARNIAGTAQFSLCRKLFGLKAPLNQLNEKDYSHITSRVKRIKDELEK 2672
            + +F ++V  +W + N+ G++ + + +KL  +K P+   +  +YS I  R K   + L  
Sbjct: 118  NEDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLIT 177

Query: 2673 AQQDALDHPHDELKQEYVTTLRHKTVAICEAEMSFLRQLAKSDHLKFSDRCTKFFHSMVK 2852
             Q   L +P        +   R   +  C AE SF  Q ++       D  T +FH MV 
Sbjct: 178  CQNLTLANPSVSNAALELEAQRKWVLLSC-AEESFFHQRSRVSWFAEGDSNTHYFHRMVD 236

Query: 2853 RNAKRNHIATVTKQDGSLTTSNDQVIAEFITYYKNLLGTKDA---CETIDMGVIASGNRL 3023
                 N I ++   +G L  S   ++   +TYY+ LLG+ ++    E  DM ++ +  R 
Sbjct: 237  SRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLT-YRC 295

Query: 3024 TSEQGSNLMRAVTEAEIKQALFDIGDDKAPGPDGFSACFFKKSWHIVGTEFCCAVKEFFN 3203
            + +Q S L ++ T+ EIK A   +  +K  GPDG+S  FF+ +W I+G E   A+ EFF+
Sbjct: 296  SQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFD 355

Query: 3204 TGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKVIAKIIASRIEPFMECLIDRA 3383
            +G+LLKQ N T + L+PK+S+  T+ ++RPISC N  YKVI+K++ SR++  +  +I  +
Sbjct: 356  SGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHS 415

Query: 3384 QSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLRKAFDSVDWEFLTSILIGLNF 3563
            QSAF+ GRS+ EN+ LA E++ GYN   +S R MLKVDL+KAFDSV WEF+T+ L  L  
Sbjct: 416  QSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAI 475

Query: 3564 PEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDPLSPYLFVICLEYLSRQLNKS 3743
            PE++++ I +C++T S+++++NG+  G F+  KGLRQGDPLSPYLFV+ +E  S+ L   
Sbjct: 476  PERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSR 535

Query: 3744 TRAAGFNYHPKCGNLKITHLAFADDLLLMSRGDIASVRTLMGCLDDFQRCSGLNSNALKS 3923
              +   +YHPK G+L I+HL FADD+++   G  +S+  +   LDDF   SGL  N  KS
Sbjct: 536  YDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKS 595

Query: 3924 SLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKLRLVHYDPLVNKVANYINAWT 4103
             L+ AG+   E +    A  F  G  P RYLG+PL   KLR+  Y PL+ K++  + +W 
Sbjct: 596  QLFQAGLDLSE-RITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWV 654

Query: 4104 GATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIGLCRNFLWHS-----KHPLVS 4268
               LS+AGR +LI SV+ G+  FW+S   +P     KI  LC  FLW       K   VS
Sbjct: 655  SKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVS 714

Query: 4269 WKDCCLPKTEGGLGFRDMRAWNRALLTKCLWDIHRKKDTLWIQWINQKYLTSGS------ 4430
            W DCCLPK+EGGLGFR    WN+ LL + +W +  +  +LW QW     L   S      
Sbjct: 715  WVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNA 774

Query: 4431 ---SIWTWQVRREDSPLIRRLLEIR 4496
                 WTW++     PL  + ++ +
Sbjct: 775  LQTDPWTWKMLLNLRPLAEKFIKAK 799


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score =  527 bits (1357), Expect = e-146
 Identities = 362/1099 (32%), Positives = 549/1099 (49%), Gaps = 29/1099 (2%)
 Frame = +3

Query: 1776 GLHGSLKQREIRSLVQSENVDILGILESKLDSHGLNRFWATKFQGWEVVDNFGTHPAGRI 1955
            GL+   +QR +RS + S N+ +   LE+ +     N   A+   GW +  N+     GRI
Sbjct: 53   GLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSNYCCSELGRI 112

Query: 1956 FILWNPA--KITLQATDIGPQAIHGRVTCKTTSNSFSISFVYGFHSIVARRGLWNSL--- 2120
            +I+W+P+   +  + TD   Q +   +   +   SF+++FVYG +S + RR LW  +   
Sbjct: 113  WIVWDPSISVLVFKRTD---QIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSLWEDILVL 169

Query: 2121 -RSYGLSLDHPWLIMGDFNSVMCEEERY--NMEPITAYVTKDLVDCCREIGLTDLPSTGC 2291
             R+  LS+  PWL++GDFN +    E Y  N   +     +DL  C R+  L+DLPS G 
Sbjct: 170  SRTSPLSVT-PWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLSDLPSRGV 228

Query: 2292 DFTWSRSGK----LSKLDRALVNGPWLQADWNGHAHFRLPGHLSDHSPCIVSIIGEHRPR 2459
             FTWS   +    L KLDRAL NG W     +  A F  PG  SDH+PCI+ I  +  P 
Sbjct: 229  FFTWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGD-SDHAPCIILIDNQPPPS 287

Query: 2460 KRPFKFFNMWASHPNFGSIVTTHWARN-IAGTAQFSLCRKLFGLKAPLNQLNEKDYSHIT 2636
            K+ FK+F+  +SHP++ + ++T W  N + G+  FSL + L   K     LN   +S+I 
Sbjct: 288  KKSFKYFSFLSSHPSYLAALSTAWEENTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNIQ 347

Query: 2637 SRVKRIKDELEKAQQDALDHPHDEL-KQEYVTTLRHKTVAICEAEMSFLRQLAKSDHLKF 2813
             R  +    LE  Q + L  P D L ++E+V   R + +    A  SF RQ ++   L  
Sbjct: 348  QRTAQSLTRLEDIQVELLTSPSDTLFRREHVA--RKQWIFFAAALESFFRQKSRIRWLHE 405

Query: 2814 SDRCTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIAEFITYYKNLLG------TKD 2975
             D  T+FFH  V  +   N I  +   DG    + DQ+    I YY +LLG      T  
Sbjct: 406  GDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIPSENVTPF 465

Query: 2976 ACETIDMGVIASGNRLTSEQGSNLMRAVTEAEIKQALFDIGDDKAPGPDGFSACFFKKSW 3155
            + E I  G++    R  S   S L    +E EI Q LF +  +KAPGPDGF   FF ++W
Sbjct: 466  SVEKIK-GLLPF--RCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIEAW 522

Query: 3156 HIVGTEFCCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKVIAKI 3335
             IV +    A++EFF +G L +  N T I L+PK +    +  +RP++CC   YKVI +I
Sbjct: 523  AIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRI 582

Query: 3336 IASRIEPFMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLRKAFD 3515
            I+ R++ F++  +   Q  F++GR + EN+ LA EL+  +     ++R  L+VD+ KA+D
Sbjct: 583  ISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYD 642

Query: 3516 SVDWEFLTSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDPLSPY 3695
            +V+WEFL +IL  L+ P  F+  I  C+S++SYS+A NG + G F+G+KG+RQGDP+S +
Sbjct: 643  NVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPMSSH 702

Query: 3696 LFVICLEYLSRQLNKSTRAAGFNYHPKCGNLKITHLAFADDLLLMSRGDIASVRTLMGCL 3875
            LFV+ ++ LS+ L+       FN HP C    ITHL+FADD+L+ S G  +S+  ++  L
Sbjct: 703  LFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTIL 762

Query: 3876 DDFQRCSGLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKLRLVH 4055
            DDF++ SGL  N  K+ L   G +    + + +      G LP RYLG+PL ++K+R   
Sbjct: 763  DDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQD 822

Query: 4056 YDPLVNKVANYINAWTGATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIGLCRN 4235
            Y PLV+++ +   +WT   LS+AGR +L+  + +  +   L     P  IC+   G+  +
Sbjct: 823  YQPLVDRINSRFTSWTARHLSFAGRLQLLNWIWR--KLCKLRPFARPFIICEVGSGVTAS 880

Query: 4236 FL---WHSKHPLVSWKDCCLPKTEGGLGFRDMRAWNRALLTKCLWDIHRKKDTLWIQWIN 4406
            F    W    PL+       P   G      + +  R  L    W I   +    +  + 
Sbjct: 881  FWHDNWTDHGPLLHLTGPAGPLLAG----LPLNSVVRDALRDDTWRISSSRSRNPVITLL 936

Query: 4407 QKYLTSGSSIWTWQVRREDSPLIRRLLEIRDQIVTKTGSQAHAVSMIASWYNDASCTNGT 4586
            Q+ L S +S+        D P         D  + K G  A             S    T
Sbjct: 937  QRVLPSAASL-------IDCP-------HDDTYLWKIGHHA------------PSNRFST 970

Query: 4587 RLAYDFFRHQNQKVPWAKDVWSACVPPKHAFILWLCIKKRLRTKDKVPY--LDIDRACIF 4760
               + + +  +  V W K VW     PK AFI W+    RL T+D++      I   C+ 
Sbjct: 971  ADTWSYLQPSSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFSIPPTCVL 1030

Query: 4761 CHQHDESCPHLFFSCSVSNYLWNRIRRWLGITRAMSTIDSALKFIRKEGRGTGWRAR--- 4931
            C+  DES  HLFF C  S+ +W+   R L +      +   L  +      T  R R   
Sbjct: 1031 CNDLDESREHLFFRCQFSSEIWSFFMRALNLNPPPQFMHCLLWTL------TASRDRNIT 1084

Query: 4932 -AKRIALGSVVYHIWNERN 4985
               ++   + VY IW ERN
Sbjct: 1085 LITKLLFHASVYFIWRERN 1103


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  526 bits (1355), Expect = e-146
 Identities = 306/828 (36%), Positives = 435/828 (52%), Gaps = 16/828 (1%)
 Frame = +3

Query: 2061 ISFVYGFHSIVARRGLWNSLRSYGLS---LDHPWLIMGDFNSVMCEEERYNMEPITA-YV 2228
            +SFVY     V R+ LWN +  +      +D PW ++GDFN ++   E    +       
Sbjct: 3    LSFVYASTDEVTRQILWNEIVDFSNDPCVIDKPWTVLGDFNQILHPSEHSTSDGFNVDRP 62

Query: 2229 TKDLVDCCREIGLTDLPSTGCDFTW----SRSGKLSKLDRALVNGPWLQADWNGHAHFRL 2396
            T+   +      LTDL   G  FTW    SR+    KLDR LVN  W     +    F  
Sbjct: 63   TRIFRETILLASLTDLSFRGNTFTWWNKRSRAPVAKKLDRILVNDKWTTTFPSSLGLFGE 122

Query: 2397 PGHLSDHSPCIVSIIGEHRPRKRPFKFFNMWASHPNFGSIVTTHW-ARNIAGTAQFSLCR 2573
            P   SDHS C +S++      K+PF+F N      NF S++   W + ++ G+A + +  
Sbjct: 123  PD-FSDHSSCELSLMSASPRSKKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSV 181

Query: 2574 KLFGLKAPLNQLNEKDYSHITSRVKRIKDELEKAQQDALDHPHDELKQEYVTTLRHKTVA 2753
            KL  LK  +   +  +YS I  R K   D L  AQ   L  P          T R K   
Sbjct: 182  KLKALKKVIRDFSRDNYSDIEKRTKEAHDALLLAQSVLLASPCPSNAAIEAETQR-KWRI 240

Query: 2754 ICEAEMSFLRQLAKSDHLKFSDRCTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIA 2933
            + EAE SF  Q ++ + L+  D  + +FH M       NHI  ++   G        +  
Sbjct: 241  LAEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLEN 300

Query: 2934 EFITYYKNLLGTKDACETIDMGVIAS--GNRLTSEQGSNLMRAVTEAEIKQALFDIGDDK 3107
              + Y+++ LG++      +   I++    R +  Q  +L    +  +IK A F +  +K
Sbjct: 301  HCVEYFQSNLGSEQGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRNK 360

Query: 3108 APGPDGFSACFFKKSWHIVGTEFCCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDY 3287
            A GPDGFS  FF   W I+G E   A+ EFF +GKLLKQ N T + L+PK ++  ++ D+
Sbjct: 361  ASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDF 420

Query: 3288 RPISCCNVTYKVIAKIIASRIEPFMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKR 3467
            RPISC N  YKVI+K++  R++ F+   I  +QSAF+ GR   EN+ LA EL+ GYN K 
Sbjct: 421  RPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKKN 480

Query: 3468 VSSRCMLKVDLRKAFDSVDWEFLTSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGH 3647
            ++   MLKVDLRKAFDSV W+F+ S L  LN PE+F   I+EC+ST+S+SV +NG   GH
Sbjct: 481  IAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAGH 540

Query: 3648 FKGQKGLRQGDPLSPYLFVICLEYLSRQLNKSTRAAGFNYHPKCGNLKITHLAFADDLLL 3827
            F   KGLRQGDP+SPYLFV+ +E  S  L     +    YHPK   L+I+HL FADD+++
Sbjct: 541  FWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMI 600

Query: 3828 MSRGDIASVRTLMGCLDDFQRCSGLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPF 4007
               G  +S+  ++  L+DF   SGL  N  K+ LY AG+S  E  D   +  F++G LP 
Sbjct: 601  FFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSE-SDSMASYGFKLGSLPV 659

Query: 4008 RYLGIPLAAEKLRLVHYDPLVNKVANYINAWTGATLSYAGRKELIKSVLQGVECFWLSIL 4187
            RYLG+PL + KL +  Y PL+ K+    N+W    LS+AGR +L+ SV+ G+  FW+S  
Sbjct: 660  RYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSF 719

Query: 4188 PVPATICDKIIGLCRNFLWHSK-----HPLVSWKDCCLPKTEGGLGFRDMRAWNRALLTK 4352
             +P     KI  LC  FLW S+        V+W   CLPK EGG+G R     NR L  +
Sbjct: 720  ILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLYLR 779

Query: 4353 CLWDIHRKKDTLWIQWINQKYLTSGSSIWTWQVRREDSPLIRRLLEIR 4496
             +W +     +LW+ W  Q  L   +S W    +  DS   + LL +R
Sbjct: 780  MIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLR 827



 Score = 62.0 bits (149), Expect = 3e-06
 Identities = 35/94 (37%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
 Frame = +3

Query: 4554 WYNDASCTNGTRLA--YDFFRHQNQKVPWAKDVWSACVPPKHAFILWLCIKKRLRTKDKV 4727
            W  D     G   A  +   R  +  VPWA+ VW     PKHAF LW     RL TK ++
Sbjct: 920  WVVDNKVCQGFSAAATWSALRPSSAPVPWARAVWFKGATPKHAFHLWTAHLDRLPTKVRL 979

Query: 4728 PY--LDIDRACIFCHQHDESCPHLFFSCSVSNYL 4823
                + ID  C  C  H E+  HLF SC  +N+L
Sbjct: 980  ASWGMQIDTTCGLCSLHPETRDHLFLSCDFANFL 1013


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  520 bits (1338), Expect = e-144
 Identities = 342/1098 (31%), Positives = 538/1098 (48%), Gaps = 31/1098 (2%)
 Frame = +3

Query: 1788 SLKQREIRSLVQSENVDILG-----ILESKLDSHGLNRFWATKFQGWEVVDNFGTHPAGR 1952
            S K  +  S+   +  D+L      +LE+++    +   +A  F+ W++V N+  +  GR
Sbjct: 311  SKKAHKFVSVPNQKATDVLPRQFGCVLETRVIESKVPVIFAKVFKDWQMVSNYEFNRLGR 370

Query: 1953 IFILWNPAKITLQATDIGPQAIHGRVTCKTTSNSFSISFVYGFHSIVARRGLWNSLRSYG 2132
            I+++W+ + + LQ      Q I   V  +     F  SF+Y  + +  R+ LW  L +  
Sbjct: 371  IWVVWS-SSVQLQVIFKSSQMIVCLVRVEHYDVEFICSFIYASNFVEERKKLWQDLHNLQ 429

Query: 2133 LSL---DHPWLIMGDFNSVMCEEER--YNMEPITAYVTKDLVDCCREIGLTDLPSTGCDF 2297
             S+   + PWL+ GDFN  +  EE   Y + P+     +D     R   L D+ + G  F
Sbjct: 430  NSVAFRNKPWLLFGDFNETLKMEEHSSYAVSPMVTPGMRDFQIVVRYCSLEDMRTHGPLF 489

Query: 2298 TWSRSGK----LSKLDRALVNGPWLQADWNGHAHFRLPGHLSDHSPCIVSIIGEHRPRKR 2465
            TW           KLDR L+N  +  A  + +      G  SDH      +    +  K 
Sbjct: 490  TWGNKRNEGLICKKLDRVLLNPEYNSAYPHSYCIMD-SGGCSDHLRGRFHLRSAIQKPKG 548

Query: 2466 PFKFFNMWASHPNFGSIVTTHWARNI----AGTAQFSLCRKLFGLKAPLNQLNEKDYSHI 2633
            PFKF N+ A+HP F   V   W        + +  F   +KL  LK  L  L+  + S +
Sbjct: 549  PFKFTNVIAAHPEFMPKVEDFWKNTTELFPSTSTLFRFSKKLKELKPILKDLSRNNLSDL 608

Query: 2634 TSRVKRIKDELEKAQQDALD--HPHDELKQEYVTTLRHKTVAICEAEMSFLRQLAKSDHL 2807
            T R     +EL + Q  +L   +PHD                I +  ++F R   K  HL
Sbjct: 609  TRRATYAYEELCRCQTKSLTTLNPHD----------------IVDESLAFERW-EKERHL 651

Query: 2808 KFSDRCTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIAEFITYYKNLLGTKDACET 2987
                                N I  V    G+   + D +  E + ++ +LL ++ +  T
Sbjct: 652  L-------------------NAIHEVMDPQGTRPPNQDDIKIEAVRFFSDLLSSQPSDFT 692

Query: 2988 ---IDMGVIASGNRLTSEQGSNLMRAVTEAEIKQALFDIGDDKAPGPDGFSACFFKKSWH 3158
               +D        R +  + + L+  +TEAE+ +  F I  +K+PGPDG++  FF+++W 
Sbjct: 693  GISVDELKGILQYRYSLHEQNLLVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWS 752

Query: 3159 IVGTEFCCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKVIAKII 3338
            ++G E   A+K FF  G L K +N TI+AL+PK ++   + DYRPISCCNV YK I+K++
Sbjct: 753  VIGQEVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLL 812

Query: 3339 ASRIEPFMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLRKAFDS 3518
            A+R++  +   I   QSAF+  R + EN+ LA EL+K Y+   +S RC +K+DL KAFDS
Sbjct: 813  ANRLKCLLPEFIAPNQSAFISDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDS 872

Query: 3519 VDWEFLTSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDPLSPYL 3698
            V W FL + L  L+ PE+F+  I  C+ST+S+SV +N           GLRQG  LSPYL
Sbjct: 873  VQWPFLLNTLAALDIPEKFIHWINLCISTASFSVQVN-----------GLRQGCSLSPYL 921

Query: 3699 FVICLEYLSRQLNKSTRAAGFNYHPKCGNLKITHLAFADDLLLMSRGDIASVRTLMGCLD 3878
            FVIC+  LS  L+K      F YHP+C N+ +THL FADD+++ S G   S+  ++    
Sbjct: 922  FVICMNVLSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFK 981

Query: 3879 DFQRCSGLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKLRLVHY 4058
            DF   SGLN +  KS+L+ A IS++    I     F+ G LP RYLG+PL  +++ L   
Sbjct: 982  DFAAFSGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADC 1041

Query: 4059 DPLVNKVANYINAWTGATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIGLCRNF 4238
             PL+ K+ + I++W    LSYAGR +L+ SV+  +  FW+S   +P     +I  +   F
Sbjct: 1042 LPLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAF 1101

Query: 4239 LW-----HSKHPLVSWKDCCLPKTEGGLGFRDMRAWNRALLTKCLWDIHRKKDTLWIQWI 4403
            LW     +     V+W D C PK+EGGLG R +   N+    K +W +   K +LW+ WI
Sbjct: 1102 LWSGTDLNPHKAKVAWHDVCKPKSEGGLGLRSLVDANKICCFKLIWRLVSAKHSLWVNWI 1161

Query: 4404 -NQKYLTSGSSIWTWQVRREDSPLIRRLLEIRDQIVTKTGSQAHAVSMIASWYNDASCTN 4580
             N    T   ++ + + R     ++  + E  ++++ +        S+  S         
Sbjct: 1162 QNNLIRTVAEALSSHRRRSHRDDILNDIEEELEKLLCRGICTEQDRSLCRSIGGQFKAKF 1221

Query: 4581 GTRLAYDFFRHQNQKVPWAKDVWSACVPPKHAFILWLCIKKRLRTKDKVPYLD--IDRAC 4754
             +   +   R Q     W K +W +   PK  FI WL    RL T DK+   +  I   C
Sbjct: 1222 FSPEIWHQIREQGLVKQWHKAIWFSGATPKFTFISWLAAHDRLTTGDKMASWNRGISSVC 1281

Query: 4755 IFCHQHDESCPHLFFSCSVSNYLWNRIRRWLGITRAMSTIDSALKFIRKEGRGTGWRARA 4934
            + C+   ES  HLFFSC+ S+++W+R+ R L + R  +   + L  +  +   +G +   
Sbjct: 1282 VLCNISAESRDHLFFSCNFSSHIWDRLTRRLLLCRYTTNFPALLLLLSGQD-FSGTKRFL 1340

Query: 4935 KRIALGSVVYHIWNERNR 4988
             R    + ++ +W ERN+
Sbjct: 1341 LRYVFQATIHTLWRERNK 1358


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  513 bits (1322), Expect = e-142
 Identities = 319/901 (35%), Positives = 475/901 (52%), Gaps = 25/901 (2%)
 Frame = +3

Query: 1764 WNIRGLHGSLKQREIRSLVQSENVDILGILESKLDSHGLNRFWATKFQGWEVVDNFGTHP 1943
            WN+RG + S  +R  +           G++E+ +      +F +    GW  V+N+    
Sbjct: 8    WNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFSV 67

Query: 1944 AGRIFILWNPA-KITLQATDIGPQAIHGRVTCKTTSNSFSISFVYGFHSIVARRGLWNSL 2120
             G+I++LW+P+ K+ +    +  Q I   +    + + F +S VY  +    R+ LWN L
Sbjct: 68   LGKIWVLWDPSVKVVVIGRSL--QMITCELLLPDSPSWFVVSIVYASNEEGTRKELWNEL 125

Query: 2121 RSYGLS---LDHPWLIMGDFNSVMCEEERYNMEPITAYVTKDLVDCCREIGLTDLPSTGC 2291
                LS   +   W+++GDFN ++  E   N         +    C  +  L DL   G 
Sbjct: 126  VQLALSPVVVGRSWIVLGDFNQILNPESAINAN--IGRKIRAFRSCLLDSDLYDLVYKGS 183

Query: 2292 DFTW----SRSGKLSKLDRALVNGPWLQADWNGHAHFRLPGHLSDHSPCIVSIIGEHRPR 2459
             +TW    S      K+DR LVN  W     + +A+F  P   SDHS C V +       
Sbjct: 184  SYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPD-FSDHSSCEVVLDPAVLKA 242

Query: 2460 KRPFKFFNMWASHPNFGSIVTTHW-ARNIAGTAQFSLCRKLFGLKAPLNQLNEKDYSHIT 2636
            KRPF+FFN +  +P+F  ++  +W + N++G+A + + +KL  LK P+   + ++YS I 
Sbjct: 243  KRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDIE 302

Query: 2637 SRVKRIKDELEKAQQDALDHP---HDELKQEYVTTLRHKTVAICEAEMSFLRQLAKSDHL 2807
             RV      +   Q+  L +P   H  L+ E       K   + +AE SF  Q +    L
Sbjct: 303  KRVSEAHAIVLHRQRITLTNPSVVHATLELEAT----RKWQILAKAEESFFCQKSSISWL 358

Query: 2808 KFSDRCTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIAEFI-----TYYKNLLGTK 2972
               D  T +FH M       N I  +    G       Q I E I      ++++LL   
Sbjct: 359  YEGDNNTAYFHKMADMRKSINTINFLIDDFGE-RIETQQGIKEGIKEHSCNFFESLLCGV 417

Query: 2973 DACETI---DMGVIASGNRLTSEQGSNLMRAVTEAEIKQALFDIGDDKAPGPDGFSACFF 3143
            +   ++   DM ++ S  R + +Q ++L R+ ++ +I++A F +  +KA GPDG+S+ FF
Sbjct: 418  EGENSLAQSDMNLLLSF-RCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFF 476

Query: 3144 KKSWHIVGTEFCCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKV 3323
            K  W +VG E   AV+EFF +G+LLKQ N T + L+PK ++   + D+RPISC N  YKV
Sbjct: 477  KGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKV 536

Query: 3324 IAKIIASRIEPFMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLR 3503
            IAK++ SR++  +  +I  +QSAF+ GR ++EN+ LA E++ GYN K +SSR MLKVDLR
Sbjct: 537  IAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLR 596

Query: 3504 KAFDSVDWEFLTSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDP 3683
            KAFDSV W+F+ S    L  PE+FV  I +C+ST  +SV +NGS  G FK  KGLRQGDP
Sbjct: 597  KAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDP 656

Query: 3684 LSPYLFVICLEYLSRQLNKSTRAAGFNYHPKCGNLKITHLAFADDLLLMSRGDIASVRTL 3863
            LSPYLFV+ +E  S  L     A   +YHPK  +L I+HL FADD+++   G  +S+  +
Sbjct: 657  LSPYLFVLAMEVFSSLLKARFDAGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLHGI 716

Query: 3864 MGCLDDFQRCSGLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKL 4043
               LDDF   SGL+ N  K++LY AG    E   I     F I  LP RYLG+PL + KL
Sbjct: 717  SEALDDFASWSGLHVNKDKTNLYLAGTDEVEALAISH-YGFPISTLPIRYLGLPLMSRKL 775

Query: 4044 RLVHYDPLVNKVANYINAWTGATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIG 4223
            ++  Y+     +     +W   +LS+AGR +LI SV+ G+  FW+S   +      KI  
Sbjct: 776  KISEYE-----LVKRFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIES 830

Query: 4224 LCRNFLWH-----SKHPLVSWKDCCLPKTEGGLGFRDMRAWNRALLTKCLWDIHRKKDTL 4388
            LC  FLW      SK   ++W   CLPK EGG+G R    WN+    + +W +    D L
Sbjct: 831  LCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVGLRRFTPWNKTFYLRFIWPLFADNDVL 890

Query: 4389 W 4391
            W
Sbjct: 891  W 891


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  511 bits (1315), Expect = e-141
 Identities = 318/901 (35%), Positives = 473/901 (52%), Gaps = 25/901 (2%)
 Frame = +3

Query: 1764 WNIRGLHGSLKQREIRSLVQSENVDILGILESKLDSHGLNRFWATKFQGWEVVDNFGTHP 1943
            WN+RG + S  +R  +           G++E+ +      +F +    GW  V+N+    
Sbjct: 8    WNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFSV 67

Query: 1944 AGRIFILWNPA-KITLQATDIGPQAIHGRVTCKTTSNSFSISFVYGFHSIVARRGLWNSL 2120
             G+I++LW+P+ K+ +    +  Q I   +    + + F +S VY  +    R+ LWN L
Sbjct: 68   LGKIWVLWDPSVKVVVIGRSL--QMITCELLLPDSPSWFVVSIVYASNEEGTRKELWNEL 125

Query: 2121 RSYGLS---LDHPWLIMGDFNSVMCEEERYNMEPITAYVTKDLVDCCREIGLTDLPSTGC 2291
                LS   +   W+++GDFN ++  E   N         +    C  +  L DL   G 
Sbjct: 126  VQLALSPVVVGRSWIVLGDFNQILNPESAINAN--IGRKIRAFRSCLLDSDLYDLVYKGS 183

Query: 2292 DFTW----SRSGKLSKLDRALVNGPWLQADWNGHAHFRLPGHLSDHSPCIVSIIGEHRPR 2459
             +TW    S      K+DR LVN  W     + +A+F  P   SDHS C V +       
Sbjct: 184  SYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPD-FSDHSSCEVVLDPAVLKA 242

Query: 2460 KRPFKFFNMWASHPNFGSIVTTHW-ARNIAGTAQFSLCRKLFGLKAPLNQLNEKDYSHIT 2636
            KRPF+FFN +  +P+F  ++  +W + N++G+A + + +KL  LK P+   + ++YS I 
Sbjct: 243  KRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDIE 302

Query: 2637 SRVKRIKDELEKAQQDALDHP---HDELKQEYVTTLRHKTVAICEAEMSFLRQLAKSDHL 2807
             RV      +   Q+  L +P   H  L+ E       K   + +AE SF  Q +    L
Sbjct: 303  KRVSEAHAIVLHRQRITLTNPSVVHATLELEAT----RKWQILAKAEESFFCQKSSISWL 358

Query: 2808 KFSDRCTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIAEFI-----TYYKNLLGTK 2972
               D  T +FH M       N I  +    G       Q I E I      ++++LL   
Sbjct: 359  YEGDNNTAYFHKMADMRKSINTINFLIDDFGE-RIETQQGIKEGIKEHSCNFFESLLCGV 417

Query: 2973 DACETI---DMGVIASGNRLTSEQGSNLMRAVTEAEIKQALFDIGDDKAPGPDGFSACFF 3143
            +   ++   DM ++ S  R + +Q ++L R+ ++ +I++A F +  +KA GPDG+S+ FF
Sbjct: 418  EGENSLAQSDMNLLLSF-RCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFF 476

Query: 3144 KKSWHIVGTEFCCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKV 3323
            K  W +VG E   AV+EFF +G+LLKQ N T + L+PK ++   + D+RPISC N  YKV
Sbjct: 477  KGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKV 536

Query: 3324 IAKIIASRIEPFMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLR 3503
            IAK++ SR++  +  +I  +QSAF+ GR ++EN+ LA E++ GYN K +SSR MLKVDLR
Sbjct: 537  IAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLR 596

Query: 3504 KAFDSVDWEFLTSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDP 3683
            KAFDSV W+F+ S    L  PE+FV  I +C+ST  +SV +NGS  G FK  KGLRQGDP
Sbjct: 597  KAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDP 656

Query: 3684 LSPYLFVICLEYLSRQLNKSTRAAGFNYHPKCGNLKITHLAFADDLLLMSRGDIASVRTL 3863
            LSPYLFV+ +E  S  L     A    YHPK  +L I+HL FADD+++   G  +S+  +
Sbjct: 657  LSPYLFVLAMEVFSSLLKARFDAGYIQYHPKTADLSISHLMFADDVMVFFDGGSSSLHGI 716

Query: 3864 MGCLDDFQRCSGLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKL 4043
               LDDF   SGL+ N  K++LY AG    E   I     F I  LP RYLG+PL + KL
Sbjct: 717  SEALDDFASWSGLHVNKDKTNLYLAGTDEVEALAISH-YGFPISTLPIRYLGLPLMSRKL 775

Query: 4044 RLVHYDPLVNKVANYINAWTGATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIG 4223
            ++  Y+     +     +W   +LS+AGR +LI SV+ G+  FW+S   +      KI  
Sbjct: 776  KISEYE-----LVKRFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIES 830

Query: 4224 LCRNFLWH-----SKHPLVSWKDCCLPKTEGGLGFRDMRAWNRALLTKCLWDIHRKKDTL 4388
            LC  FLW      SK   ++W   CLPK EGG+  R    WN+    + +W +    D L
Sbjct: 831  LCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVALRRFTPWNKTFYLRFIWPLFADNDVL 890

Query: 4389 W 4391
            W
Sbjct: 891  W 891


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score =  489 bits (1260), Expect = e-135
 Identities = 334/1063 (31%), Positives = 505/1063 (47%), Gaps = 54/1063 (5%)
 Frame = +3

Query: 2049 NSFSISFVYGFHSIVARRGLWNSLRSYGLSLD---HPWLIMGDFNSVMCEEERYNMEPIT 2219
            +S  +S VY  +  + R+ LW  L    +SL     PW+++GDFN V+C  E      + 
Sbjct: 51   DSVVVSIVYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSLN 110

Query: 2220 AYVT-KDLVDCCREIGLTDLPSTGCDFTWSRSGKL----SKLDRALVNGPWLQADWNGHA 2384
                 K   DC  E  L DL   G  FTW           KLDR LVN  W     + +A
Sbjct: 111  VNRRMKVFRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKKLDRILVNESWCSRFPSAYA 170

Query: 2385 HFRLPGHLSDHSPCIVSIIGEHRPRKRPFKFFNMWASHPNFGSIVTTHW-ARNIAGTAQF 2561
             F  P   SDH+ C V I       KRPF+F+N    +P+F S+V   W + N+ G++ F
Sbjct: 171  VFGEPD-FSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMF 229

Query: 2562 SLCRKLFGLKAPLNQLNEKDYSHITSRVKRIKDELEKAQQDALDHP---HDELKQEYVTT 2732
             + +KL  LK P+   + +++S++  RVK   + +   Q   L  P   +  L+ E    
Sbjct: 230  KMSKKLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAALEME---- 285

Query: 2733 LRHKTVAICEAEMSFLRQLAKSDHLKFSDRCTKFFHSMVKRNAKRNHIATVTKQDGSLTT 2912
             + K + + +AE SF  Q ++   +   D  T +FH M       N I  +   +G    
Sbjct: 286  AQRKWLILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKID 345

Query: 2913 SNDQVIAEFITYYKNLLGTKDACETI---DMGVIASGNRLTSEQGSNLMRAVTEAEIKQA 3083
            +   +    I Y+ NLLG +     +   D  ++    R + +Q   L  + +  +IK A
Sbjct: 346  TQLGIKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPF-RCSHDQKKELAMSFSRQDIKSA 404

Query: 3084 LFDIGDDKAPGPDGFSACFFKKSWHIVGTEFCCAVKEFFNTGKLLKQINHTIIALVPKSS 3263
             F    +K  GPDGF   FFK++W ++GTE   AV EFF +  LLKQ N T + L+PK +
Sbjct: 405  FFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKIT 464

Query: 3264 HCPTVGDYRPISCCN----VTYKVIAKIIASRIEPFMECLIDRAQSAFVQGRSMTENIHL 3431
            +   + D+RPISC +      YKVIA+++ +R++  +  +I   QSAF+ GR + EN+ L
Sbjct: 465  NASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLL 524

Query: 3432 AQELLKGYNHKRVSSRCMLKVDLRKAFDSVDWEFLTSILIGLNFPEQFVSMIMECVSTSS 3611
            A EL++GYN + +  R MLKVDLRKAFDS+ W+F+ S L  +  P++FV  I +C+ST +
Sbjct: 525  ATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPT 584

Query: 3612 YSVAINGSIYGHFKGQKGLRQGDPLSPYLFVICLEYLSRQLNKSTRAAGFNYHPKCGNLK 3791
            +SV +NG+  G FK  +GLRQG+PLSP+LFV+ +E  S  LN   +A   +YHPK   L 
Sbjct: 585  FSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPLS 644

Query: 3792 ITHLAFADDLLLMSRGDIASVRTLMGCLDDFQRCSGLNSNALKSSLYTAGISNQELQDIK 3971
            I+HL FADD+++   G  +S+  +   L+DF   SGL  N  K+ LY AG+   E   I 
Sbjct: 645  ISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGLDRIEASTI- 703

Query: 3972 EATNFEIGPLPFRYLGIPLAAEKLRLVHYDPLVNKVANYINAWTGATLSYAGRKELIKSV 4151
                                A KLR+  Y PL+ K+A    +W+   LS+AGR +LI SV
Sbjct: 704  --------------------ARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRVQLIASV 743

Query: 4152 LQGVECFWLSILPVPATICDKIIGLCRNFLWH-----SKHPLVSWKDCCLPKTEGGLGFR 4316
            + G+  FW+S   +P     +I  LC  FLW       K   V+W + CLPK EGG+G R
Sbjct: 744  ISGIINFWISTFILPKGCVKRIEALCARFLWSGNIDVKKGAKVAWSEVCLPKEEGGVGLR 803

Query: 4317 DMRAWNRALLTKCLWDIHRKKDTLWI-QW---------------------INQKYLTSGS 4430
                    +L   LWD   KK + W   W                     I  K   + S
Sbjct: 804  RF-----TVLNTTLWD--GKKISFWFDNWSPLGPLFKLFGSSGPRALCIPIQAKVADACS 856

Query: 4431 SI-WTWQVRREDSPLIRRLLEIRDQIVTKTGSQAHAVSMIASWYNDASCTN-GTRLAYDF 4604
             + W     R D  L   L+ +    +    S       I    +D +C        ++ 
Sbjct: 857  DVGWLISPPRTDQAL-ALLIHLTTIALPCFDSSPDTFVWIV---DDFTCHGFSAARTWEA 912

Query: 4605 FRHQNQKVPWAKDVWSACVPPKHAFILWLCIKKRLRTKDKVPYLDIDRA--CIFCHQHDE 4778
             R +     W K VW     PKHAF +W+    RL T+ ++    +     C  C    E
Sbjct: 913  MRPKKPVKDWTKSVWFKGSVPKHAFNMWVSHLNRLPTRQRLAAWGVTTTTDCCLCSSRPE 972

Query: 4779 SCPHLFFSCSVSNYLWNRIRRWLGITRAMSTIDSALKFIR-KEGRGTGWRARAKRIALGS 4955
            S  HL   C  S  +W  +  +  +T + +  +S  + +       +   +  ++IA  +
Sbjct: 973  SRDHLLLYCVFSAVIWKLV--FFRLTPSQAIFNSWAELLSWTRINSSKAPSLLRKIAAQA 1030

Query: 4956 VVYHIWNERNRITFDGSRLDKEAILFKIK---TNIYRVLFALF 5075
             V+H+W +RN +  +   +    +   I     N+YR +  LF
Sbjct: 1031 SVFHLWKQRNNVLHNSIFISPATVFHFIDRELENLYRYIQILF 1073


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  474 bits (1220), Expect = e-130
 Identities = 293/830 (35%), Positives = 441/830 (53%), Gaps = 27/830 (3%)
 Frame = +3

Query: 2097 RRGLWNSLRSYGLS---LDHPWLIMGDFNSVMCEEERYNME--PITAYVTKDLVDCCREI 2261
            R+ LWN LR +  S      PW+I GDFN ++  EE  N    P+T    +D        
Sbjct: 4    RKELWNDLRDHSDSPIIRSKPWIIFGDFNEILDMEEHSNSRENPVTTTGMRDFQMAVNHC 63

Query: 2262 GLTDLPSTGCDFTWSRSGK----LSKLDRALVNGPWLQADWNGHAHFRLPGHLSDHSPCI 2429
             +TDL   G  FTWS   +      KLDR LVN  WLQ+    ++ F   G  SDH  C 
Sbjct: 64   SITDLAYHGPLFTWSNKRENDLIAKKLDRVLVNDVWLQSFPRSYSVFEAGG-CSDHLRCR 122

Query: 2430 VSI---IGEHRPRKRPFKFFNMWASHPNFGSIVTTHWARN----IAGTAQFSLCRKLFGL 2588
            +++    G     KRPFKF N+     +F   V ++W       ++ ++ F   +KL GL
Sbjct: 123  INLNVGAGAVVKGKRPFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRFSKKLKGL 182

Query: 2589 KAPLNQLNEKDYSHITSRVKRIKDELEKAQQDALDHPH-DELKQEYVTTLRHKTVAICEA 2765
            K  L  L ++   ++  + K   + L + Q   + +P    +++E     +   +A+ E 
Sbjct: 183  KPLLRNLGKERLGNLVKQTKEAFETLCQKQAMKMANPSPSSMQEENEAYAKWDHIAVLEE 242

Query: 2766 EMSFLRQLAKSDHLKFSDRCTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIAEFIT 2945
            +  FL+Q +K   L   DR  K FH  V     +N I  +   DGS+ +  +++  E   
Sbjct: 243  K--FLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTEAEH 300

Query: 2946 YYKNLLGT-KDACETIDMGVIAS--GNRLTSEQGSNLMRAVTEAEIKQALFDIGDDKAPG 3116
            +++  L    +  E I +  +      R +      L   V+  EI + +F + +DK+PG
Sbjct: 301  HFREFLQLIPNDFEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPG 360

Query: 3117 PDGFSACFFKKSWHIVGTEFCCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYRPI 3296
            PDG++A F+K +W+I+G EF  A++ FF  G L K IN TI+AL+PK      + DYRPI
Sbjct: 361  PDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPI 420

Query: 3297 SCCNVTYKVIAKIIASRIEPFMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRVSS 3476
            SCCNV YKVI+KIIA+R++  +   I   QSAFV+ R + EN+ LA E++K Y+   VSS
Sbjct: 421  SCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSS 480

Query: 3477 RCMLKVDLRKAFDSVDWEFLTSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHFKG 3656
            RC LK+D+ KAFDSV W+FL ++L  +NFP +F   I  C++T+S+SV +NG + G F  
Sbjct: 481  RCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFSS 540

Query: 3657 QKGLRQGDPLSPYLFVICLEYLSRQLNKSTRAAGFNYHPKCGNLKITHLAFADDLLLMSR 3836
             + LRQG  LSPYLFVI ++ LS+ L+K+  A  F YHPKC  + +THL+FADDL+++S 
Sbjct: 541  ARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILSD 600

Query: 3837 GDIASVRTLMGCLDDFQRCSGLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPFRYL 4016
            G + S+  ++  L +F + SGL  +  KS++Y AG+     Q+I +  +F++G LP RYL
Sbjct: 601  GKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYL 660

Query: 4017 GIPLAAEKLRLVHYDPLVNKVANYINAWTGATLSYAGRKELIKSVLQGVECFWLSILPVP 4196
            G+PL +++L      PL+ ++   I AWT   LS+AGR  LI S L  +  FW++   +P
Sbjct: 661  GLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRLP 720

Query: 4197 ATICDKIIGLCRNFLW-----HSKHPLVSWKDCCLPKTEGGLGFRDMRAWNRALLTKCLW 4361
                 +I  LC  FLW      S    VSW+  C PK E         AW+     K +W
Sbjct: 721  RACIREIDKLCSAFLWSGTELSSNKAKVSWEAICKPKKE---------AWH-----KGVW 766

Query: 4362 DIHRKKDTLWIQWIN-QKYLTSGSSIWTWQVRRE-DSPLIRRLLEIRDQI 4505
              H      +  W+     L++G  +  W ++      L    LE RD +
Sbjct: 767  FAHETPKHSFCVWLAIWNKLSTGQRMQHWNLQSSVGCVLCNNNLETRDHL 816



 Score = 64.7 bits (156), Expect = 4e-07
 Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
 Frame = +3

Query: 4620 QKVPWAKDVWSACVPPKHAFILWLCIKKRLRTKDKVPYLDIDRA--CIFCHQHDESCPHL 4793
            +K  W K VW A   PKH+F +WL I  +L T  ++ + ++  +  C+ C+ + E+  HL
Sbjct: 757  KKEAWHKGVWFAHETPKHSFCVWLAIWNKLSTGQRMQHWNLQSSVGCVLCNNNLETRDHL 816

Query: 4794 FFSCSVSNYLWNRIRRWLGITRAMSTIDSALKFIRKE--GRGTGWRARAKRIALGSVVYH 4967
            FFSC+ ++ +W  + + L      +   + + ++  +   R + + AR+    L + VY 
Sbjct: 817  FFSCAYTSGIWEALAKNLLQRSYTTDWQTIISYVSGQCHDRVSCFLARS---VLQASVYT 873

Query: 4968 IWNERN 4985
            IW ERN
Sbjct: 874  IWRERN 879


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  458 bits (1179), Expect = e-125
 Identities = 286/931 (30%), Positives = 448/931 (48%), Gaps = 89/931 (9%)
 Frame = +3

Query: 2460 KRPFKFFNMWASHPNFGSIVTTHWARN----IAGTAQFSLCRKLFGLKAPLNQLNEKDYS 2627
            ++PFKF N+    P F  +V +HWA +    ++ +A +   +KL  LK  L +L ++   
Sbjct: 545  RKPFKFVNVLTKLPQFLPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKLG 604

Query: 2628 HITSRVKRIKDELEKAQQDALDHPHDELKQEYVTTLRHKTVAICEAEMSFLRQLAKSDHL 2807
             +  R +     L + Q   L +P  E   E +      T  + E E  FL+Q +K   +
Sbjct: 605  DLPKRTREAHILLCEKQATTLANPSQETIAEELKAYTDWT-HLSELEEGFLKQKSKLHWM 663

Query: 2808 KFSDRCTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIAEFITYYKNLL----GTKD 2975
               D    +FH   +    RN I  +   +     +++++  E   ++   L    G   
Sbjct: 664  NVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLNRQSGDFH 723

Query: 2976 ACETIDMGVIASGNRLTSEQGSNLMRAVTEAEIKQALFDIGDDKAPGPDGFSACFFKKSW 3155
                 D+  + S     ++Q   L R VT  EI++ LF + ++K+PGPDG+++ FFK +W
Sbjct: 724  GISVEDLRNLMSYRCSVTDQNI-LTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATW 782

Query: 3156 HIVGTEFCCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKVIAKI 3335
             + G +F  A++ FF  G L K +N TI+AL+PK      + DYRPISCCNV YKVI+KI
Sbjct: 783  SLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKI 842

Query: 3336 IASRIEPFMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLRKAFD 3515
            +A+R++  +   I + QSAFV+ R + EN+ LA EL+K Y+ + V+ RC +K+D+ KAFD
Sbjct: 843  LANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFD 902

Query: 3516 SVDWEFLTSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDPLSPY 3695
            SV W+FL + L  LNFPE F   I  C+ST+++SV +NG + G F   +GLRQG  LSPY
Sbjct: 903  SVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPY 962

Query: 3696 LFVICLEYLSRQLNKSTRAAGFNYHPKCGNLKITHLAFADDLLLMSRGDIASVRTLMGCL 3875
            LFVIC+  LS  ++++       YHPKC  + +THL FADDL++   G   S+  ++   
Sbjct: 963  LFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVF 1022

Query: 3876 DDFQRCSGLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKLRLVH 4055
             +F   SGL  +  KS++Y AG+S  +      +  F  G LP RYLG+PL  +++    
Sbjct: 1023 KEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTAD 1082

Query: 4056 YDPLVNKVANYINAWTGATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIGLCRN 4235
            Y PL+  V   I++WT  +LSYAGR  L+ SV+  +  FW+S   +PA    +I  LC  
Sbjct: 1083 YSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSA 1142

Query: 4236 FLW-----HSKHPLVSWKDCCLPKTEGGLGFRDMRAWNRALLTKCL-------------- 4358
            FLW     + K   ++W   C PK EGGLG + +   N+    K +              
Sbjct: 1143 FLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTW 1202

Query: 4359 -WDIHRKKDTLWI--------QWINQKYLT----------------SGSSIW-------- 4439
             W    +K T W          W+ +K L                 S +S W        
Sbjct: 1203 IWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHWSHLG 1262

Query: 4440 ---------------------------TWQVRREDSPLIRRLLEIRDQIVTKTGSQAHAV 4538
                                       T Q R+  + +  R+     ++  +       +
Sbjct: 1263 RLLDITGTRRVIDLGIPLETNLETVLRTHQHRQHRAAIYNRINAEIQRLQQQEREAGPDI 1322

Query: 4539 SMIASWYNDASCTNGTRLAYDFFRHQNQKVPWAKDVWSACVPPKHAFILWLCIKKRLRTK 4718
            S+  S  ND +    T++ ++  R    +  W K VW     PK++F+LWL ++ RL T 
Sbjct: 1323 SLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTG 1382

Query: 4719 DKVPYLDIDR--ACIFCHQHDESCPHLFFSCSVSNYLWNRIRRWLGITRAMSTIDSALKF 4892
            D++   +  +   C  C+  +E+  HLFFSC  ++Y+W  + + L  T      +     
Sbjct: 1383 DRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLSTNYSRDWNRLFTL 1442

Query: 4893 IRKEGRGTGWRARAKRIALGSVVYHIWNERN 4985
            +              R    + +YHIW ERN
Sbjct: 1443 LCTSNLPRD-HLFLFRYVFQASIYHIWRERN 1472


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  453 bits (1165), Expect = e-124
 Identities = 280/916 (30%), Positives = 421/916 (45%), Gaps = 35/916 (3%)
 Frame = +3

Query: 2394 LPGHLSDHSPCIVSIIGEHRPRKRPFKFFNMWASHPNFGSIVTTHWARNIAGTAQFSLCR 2573
            LP  +SDH+  +V +    R RK PFKFFN  A   +F  IV+  WA N+ G+ QF + R
Sbjct: 142  LPPGISDHAAMVVKVGLPFRIRKAPFKFFNFLADREDFIPIVSAVWATNVWGSKQFQVWR 201

Query: 2574 KLFGLKAPLNQLNEKDYSHITSRVKRIKDELEKAQQDALDHPHDELKQEYVTTLRHKTVA 2753
            KL  +K     LN                                               
Sbjct: 202  KLKLVKNQFKLLN----------------------------------------------- 214

Query: 2754 ICEAEMSFLRQLAKSDHLKFSDRCTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIA 2933
             C      L++ ++   LK  D+ + FF   + ++  RN IAT+ + DG           
Sbjct: 215  -CNVVEKLLKKKSRVQWLKKGDKNSTFFFKTMTKHRNRNRIATINRSDGP---------- 263

Query: 2934 EFITYYKNLLGTKDACETIDMGVIASGNRLTSEQGSNLMRAVTEAEIKQALFDIGDDKAP 3113
                                            +   +L    T  +I+   F +  +K+P
Sbjct: 264  --------------------------------DLAKSLCNEFTHDDIRAVFFSMNPNKSP 291

Query: 3114 GPDGFSACFFKKSWHIVGTEF-CCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYR 3290
            GPDGF+ CFF+K+W ++G      AVKEFF+ G LL ++N TII LVPK ++  T+ D+R
Sbjct: 292  GPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNSTIITLVPKVANPTTMSDFR 351

Query: 3291 PISCCNVTYKVIAKIIASRIEPFMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRV 3470
            PISCCN  YK+IAK++A+R++  +  ++  +QS F+ GR + +NI LAQE++  Y+    
Sbjct: 352  PISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGDNILLAQEIICDYHKADG 411

Query: 3471 SSRCMLKVDLRKAFDSVDWEFLTSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHF 3650
              RC   VD+ KA D+V+W+F+ + L   N P   +  I  C+S++ +SV +NG + G F
Sbjct: 412  QPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISSAKFSVCVNGELAGFF 471

Query: 3651 KGQKGLRQGDPLSPYLFVICLEYLSRQLNKSTRAAG-FNYHPKCGNLKITHLAFADDLLL 3827
              ++GLRQGDPLSPYLFVI +E LS  + +    +  F YH +C  L ++HL FADDLL+
Sbjct: 472  ARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWRCDQLNLSHLCFADDLLM 531

Query: 3828 MSRGDIASVRTLMGCLDDFQRCSGLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPF 4007
               GD  SVRTL     +F+  S L +N  +S ++ AG+       + + TNF +G  P 
Sbjct: 532  FCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDSVLQVTNFSLGTCPV 591

Query: 4008 RYLGIPLAAEKLRLVHYDPLVNKVANYINAWTGATLSYAGRKELIKSVLQGVECFWLSIL 4187
            RYLGIPL   KLR+    PL++++   I +W    LS+AGR +LI+SVL  ++ +W S L
Sbjct: 592  RYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHL 651

Query: 4188 PVPATICDKIIGLCRNFLWHSK-----HPLVSWKDCCLPKTEGGLGFRDMRAWNRALLTK 4352
             +P  +   I    R FLW           V+W + CLPK EGGLG +D+  WN+AL+  
Sbjct: 652  ILPKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHCWNKALMIS 711

Query: 4353 CLWDIHRKKDTLWIQWINQKYLTSGSSIWTWQVRREDSPLIRRLLEIRDQ----IVTKTG 4520
             +W++       W  W+ + YL  G+S W   +    S   R+LL+IR+      V   G
Sbjct: 712  HIWNLVSSSSNFWTDWV-KVYLLKGNSFWNAPLPSICSWNWRKLLKIRELCCSFFVNIIG 770

Query: 4521 SQAHAVSMIASWYNDASCT---------------------NG---TRLAYDFFRHQNQKV 4628
                      +W+     T                     NG   T  A++  R     V
Sbjct: 771  DGRATSLWFDNWHPLGPLTLRWSSNIIGESGLSKSAMLTPNGFYSTSSAWNTLRPSRFIV 830

Query: 4629 PWAKDVWSACVPPKHAFILWLCIKKRLRTKDKVPYLDIDRACIFCHQHDESCPHLFFSCS 4808
            PW + VW                                          E+  HLFF C+
Sbjct: 831  PWYRLVWFVA---------------------------------------ETHNHLFFDCA 851

Query: 4809 VSNYLWNRIRRWLGITRAMSTIDSALKFIRKEGRGTGWRARAKRIALGSVVYHIWNERNR 4988
             S  +W  +     +++ +      + ++    +G        ++AL +VVY IW ERN 
Sbjct: 852  YSFGIWTHVLSKCDVSKPLLPWSDFIFWVATNWKGNSLPVVILKLALQAVVYAIWRERNN 911

Query: 4989 ITFDGSRLDKEAILFK 5036
              F    L   A++FK
Sbjct: 912  RRFRNESL-PPAVVFK 926


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  449 bits (1154), Expect = e-123
 Identities = 266/808 (32%), Positives = 412/808 (50%), Gaps = 85/808 (10%)
 Frame = +3

Query: 2817 DRCTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIAEFITYYKNLLGTKDACETIDM 2996
            DR  K FH  +      N I  +  +DG + TS   +  E + Y+++ L T  A +   M
Sbjct: 91   DRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFLQTIPA-DYEGM 149

Query: 2997 GVIASGN----RLTSEQGSNLMRAVTEAEIKQALFDIGDDKAPGPDGFSACFFKKSWHIV 3164
             V    N    R + +    L R VT  EIK+ +F +  DK+PGPDG+++ F+K SW I+
Sbjct: 150  CVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEII 209

Query: 3165 GTEFCCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKVIAKIIAS 3344
            G E   A++ FF  G L K +N TI+AL+PK      + DYRPISCCNV YK I+KI+A+
Sbjct: 210  GDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILAN 269

Query: 3345 RIEPFMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLRKAFDSVD 3524
            R++  +   I   QSAFV+ R + EN+ LA EL+K Y+   +S+RC +K+D+ KAFDS+ 
Sbjct: 270  RLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQ 329

Query: 3525 WEFLTSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDPLSPYLFV 3704
            W FLT +L  +NFP +F+  I  C+ST+S+S+ +NG + G+F+  +GLRQG  LSPYLFV
Sbjct: 330  WSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFV 389

Query: 3705 ICLEYLSRQLNKSTRAAGFNYHPKCGNLKITHLAFADDLLLMSRGDIASVRTLMGCLDDF 3884
            I ++ LSR L+K+  A  F YHP+C  L +THL FADDL++++ G I SV  ++  L+ F
Sbjct: 390  ISMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQF 449

Query: 3885 QRCSGLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKLRLVHYDP 4064
                GL     K++LY AG+S+   Q +    +F +G LP RYLG+PL  ++L    Y P
Sbjct: 450  AAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSP 509

Query: 4065 LVNKVANYINAWTGATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIGLCRNFLW 4244
            L++++   I  WT   LS+AGR  LI SVL  +  FW++   +P    ++I  +    LW
Sbjct: 510  LIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLW 569

Query: 4245 -----HSKHPLVSWKDCCLPKTEGGLGFRDMRAWNRALLTKCLWDIHRKKDTLWIQWINQ 4409
                 + K   VSW + C PK EGGLG + +R  N+    K +W +   +D+LW++W   
Sbjct: 570  SGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRM 629

Query: 4410 KYL------------TSGSSIWTWQVRREDSPLIRRLLEIRDQIVTK------------- 4514
              L            T GS IW   ++  +       +E+ + + T              
Sbjct: 630  NLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKGPLI 689

Query: 4515 --TGSQ-------AHAVSMIASWYNDASCTNGTRLAYDF-------FRHQN----QKVPW 4634
              TG++       +  +++  +W       +   +  +F       ++H+N      + W
Sbjct: 690  NLTGARGAIDMGISRHMTLAEAWSRRRRKRHRVEILNEFEEILLQKYQHRNIELEDAILW 749

Query: 4635 ------------AKDVWS-----------------ACVPPKHAFILWLCIKKRLRTKDKV 4727
                         KD W+                 A   PK +F  WL I+ RL T D++
Sbjct: 750  RGKEDVFKARFSTKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAWLAIRNRLSTGDRM 809

Query: 4728 PYLD--IDRACIFCHQHDESCPHLFFSCSVSNYLWNRIRRWLGITRAMSTIDSALKFIRK 4901
               +      C+FC    E+  HLFF C  S+ +W  I + +   R  +   + + +I  
Sbjct: 810  MTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSIAKNVYKDRFSTKWSAVVNYI-S 868

Query: 4902 EGRGTGWRARAKRIALGSVVYHIWNERN 4985
            + +    ++   R      ++ IW ERN
Sbjct: 869  DSQPDRIQSFLSRYTFQVSIHSIWRERN 896


>emb|CCA66235.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1380

 Score =  446 bits (1147), Expect = e-122
 Identities = 292/902 (32%), Positives = 462/902 (51%), Gaps = 17/902 (1%)
 Frame = +3

Query: 1761 AWNIRGLHGSLKQREIRSLVQSENVDILGILESKL---DSHGLNRFWATKFQGWEVVDNF 1931
            +WNIRGL   +K+  +R ++   N   + I E+KL   D   +   W +    W      
Sbjct: 6    SWNIRGLGARIKRSALRKMISIHNPLFITIQETKLGEIDPKLIRSIWNSNEVAWTFSPAD 65

Query: 1932 GTHPAGRIFILWNPAKITLQATDIGPQAIHGRVTCKTTSNSFSISFVYGFHSIVARRGLW 2111
            G   AG I  LW+   IT+ ++ +    I  R T    +   S+  +Y   S+  R  +W
Sbjct: 66   GN--AGGILTLWSKTFITVSSSHVSKNWIAVRGTISHLNWDCSLISIYNPCSVEERAVVW 123

Query: 2112 NSLRSYGLSLDHPWLIMGDFNSVMCEEERYNMEPITAYVTKDLVDCCREIGLTDLPSTGC 2291
              +  +  +   P LI+GDFN  +   +R ++  I+   + D     + + LT++P+T  
Sbjct: 124  GEILEFWTTSKLPCLIIGDFNETLASNDRGSLA-ISQSGSNDFRQFVQSLQLTEIPTTE- 181

Query: 2292 DFTWSRSGKLSKLDRALVNGPWLQADWNGHAHFR------LPGHLSDHSPCIV-SIIGEH 2450
             FTW R    SKLDR  VN  WL        H+       L   LSDH P ++ S +   
Sbjct: 182  RFTWFRGNSKSKLDRCFVNPEWL-------THYPTLKLSLLNRGLSDHCPLLLNSSVRNW 234

Query: 2451 RPRKRPFKFFNMWASHPNFGSIVTTHWARNIAGTAQFSLCRKLFGLKAPLNQLNEKDYSH 2630
             P+  PFKF N W S P    +V   W ++    +   L +KL  +K  L   NEK + +
Sbjct: 235  GPK--PFKFQNCWLSDPRCMRLVKDTWQKS----SPMGLVQKLKTVKKDLKDWNEKVFGN 288

Query: 2631 ITSRVKRIKDELEKAQQDALDHPHDELKQEYVTTLRHKTVAICEAEMSFLRQLAKSDHLK 2810
            I + +K+++ E+ +  + + +   D  + E     +    +  + + S+  Q ++   LK
Sbjct: 289  IEANIKQLEHEINQLDKISNERDLDSFELEKKKKAQVDLWSWMKTKESYWSQQSRIKWLK 348

Query: 2811 FSDRCTKFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIAEFITYYKNLLGTKDACETI 2990
              DR TKFFH +      RN I ++ + +G   +  +++  E + Y++     +     +
Sbjct: 349  QGDRNTKFFHVVASIRKHRNSITSI-EVNGDKISEPEKIKLEAMKYFRKAFKEESYNRPL 407

Query: 2991 DMGVIASGNRLTSEQGSNLMRAVTEAEIKQALFDIGDDKAPGPDGFSACFFKKSWHIVGT 3170
              G+      LT  Q ++L+   +  EI +A+     DKAPGPDGF+  F KK+W ++  
Sbjct: 408  LEGL--DFKHLTEAQSADLIAPFSHEEIDKAVASCSSDKAPGPDGFNFTFIKKAWDVIKE 465

Query: 3171 EFCCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKVIAKIIASRI 3350
            E    V+EF+N+ +L K  N   IAL+PK+       D+RPIS     YK++AK++  R+
Sbjct: 466  EIYETVQEFWNSSRLPKGCNMAFIALIPKTDSPKGFQDFRPISMVGCVYKIVAKLLTMRL 525

Query: 3351 EPFMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLRKAFDSVDWE 3530
            +  M  L+  AQS+F++GR + ++  +A EL+      + SS  +LK+D  KAFDSV W 
Sbjct: 526  QKVMNSLVGPAQSSFIEGRHILDSALIAGELIDSCKRWKTSS-SLLKIDFHKAFDSVSWA 584

Query: 3531 FLTSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDPLSPYLFVIC 3710
            FL   L  +NFP Q+   I  CV+T+S SV INGS    FK QKGLRQGDPLSP+LFV+ 
Sbjct: 585  FLDWTLEKMNFPIQWRQWIQTCVTTASSSVLINGSPSPPFKLQKGLRQGDPLSPFLFVLV 644

Query: 3711 LEYLSRQLNKSTRAAGF--NYHPKCGNLKITHLAFADDLLLMSRGDIASVRTLMGCLDDF 3884
            +E L+  +NK+  + GF        G LK++HL +ADD L+     I  ++ +   L  F
Sbjct: 645  VETLNLLINKAI-SLGFWEGVEVSKGGLKLSHLQYADDTLIFCAPRIDYLQNIKKVLILF 703

Query: 3885 QRCSGLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKLRLVHYDP 4064
               SGL  N  KSSL    +SNQ ++D   +   + G LPF YLG+P+  +  R+  ++P
Sbjct: 704  HLASGLQINFHKSSLIGINVSNQWMKDATASLLCKGGSLPFNYLGLPIGGDSSRIKTWEP 763

Query: 4065 LVNKVANYINAWTGATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIGLCRNFLW 4244
            ++ +++  +++W G  LS  GR  LIKS +  +  +++S+ P+P ++ ++I  L R+FLW
Sbjct: 764  ILERISKKLDSWKGRLLSIGGRVTLIKSSISSLPLYFMSLFPIPRSVIEQINKLQRHFLW 823

Query: 4245 ---HSKHPL--VSWKDCCLPKTEGGLGFRDMRAWNRALLTKCLWDIHRKKDTLWIQWINQ 4409
                 K  L  V+WK   LPK  GGLG  ++   N ALL K +W        LW + I  
Sbjct: 824  SGDRGKRALSQVAWKVIELPKAFGGLGIGNIFHRNLALLFKWIWKFFNDTSPLWRELIWH 883

Query: 4410 KY 4415
            KY
Sbjct: 884  KY 885


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  434 bits (1117), Expect = e-118
 Identities = 274/807 (33%), Positives = 412/807 (51%), Gaps = 88/807 (10%)
 Frame = +3

Query: 2829 KFFHSMVKRNAKRNHIATVTKQDGSLTTSNDQVIAEFITYYKNLLGTKD----ACETIDM 2996
            K FH  V     +N I  +   DG +   +D ++ E   ++K  L          E  ++
Sbjct: 22   KTFHRAVIERETKNMIKEIYCTDGRVVQGDD-IMVEAEKFFKEFLQLIPEDFVGVEVREL 80

Query: 2997 GVIASGNRLTSEQGSNLMRAVTEAEIKQALFDIGDDKAPGPDGFSACFFKKSWHIVGTEF 3176
              +    R T+     L R V+  EIK  LF +  DK+PGPDG+++ F+K +W I+G EF
Sbjct: 81   QDLLQF-RCTNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEF 139

Query: 3177 CCAVKEFFNTGKLLKQINHTIIALVPKSSHCPTVGDYRPISCCNVTYKVIAKIIASRIEP 3356
               V+ FF  G L K IN  I+AL+PK      + DYRPISCCNV YKVI+KIIA+R++ 
Sbjct: 140  TLPVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKL 199

Query: 3357 FMECLIDRAQSAFVQGRSMTENIHLAQELLKGYNHKRVSSRCMLKVDLRKAFDSVDWEFL 3536
             +   I   QSAFV+ R + EN+ LA EL+K Y+   +S+RC +K+D+ KAFDSV W FL
Sbjct: 200  LLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFL 259

Query: 3537 TSILIGLNFPEQFVSMIMECVSTSSYSVAINGSIYGHFKGQKGLRQGDPLSPYLFVICLE 3716
            T+ L+ +NF   F+  I  C++T+S+SV +NG + G+F+ ++GLRQG  LSPYLFVIC++
Sbjct: 260  TNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMD 319

Query: 3717 YLSRQLNKSTRAAGFNYHPKCGNLKITHLAFADDLLLMSRGDIASVRTLMGCLDDFQRCS 3896
             LS+ L+K+     F +HPKC  L +THL+FADDL+++S G   S+  ++   D+F + S
Sbjct: 320  VLSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRS 379

Query: 3897 GLNSNALKSSLYTAGISNQELQDIKEATNFEIGPLPFRYLGIPLAAEKLRLVHYDPLVNK 4076
            GL  +  KS+LY AG+S    Q+I     F++G LP RYLG+PL  ++L    Y PL+ +
Sbjct: 380  GLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQ 439

Query: 4077 VANYINAWTGATLSYAGRKELIKSVLQGVECFWLSILPVPATICDKIIGLCRNFLWH--- 4247
            +   I  WT    S+AGR  LIKSVL  +  FWL+   +P     +I  LC +FLW    
Sbjct: 440  IKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSE 499

Query: 4248 --SKHPLVSWKDCCLPKTEGGLGFRDMR----------AW-----NRALLTKCLWDIHRK 4376
              S    +SW   C PK EGGLG R+++           W     + +L TK + +   +
Sbjct: 500  MSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIR 559

Query: 4377 KDTLWI--------QWINQKYLT--------------SGSSI------WTWQVRREDSPL 4472
            K ++W          WI +K L               +G S       W+   R  D+  
Sbjct: 560  KKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVG 619

Query: 4473 IRRLLEI---RDQIV----TKTGSQAHAVSMIAS----------WYNDASCTN------- 4580
             +  +++   R+  V    T+   + H  S++             ++DA  T        
Sbjct: 620  DKGTIDLGIPREASVADAWTRRSRRRHRTSLLNEIEEMMAYQRIHHSDAEDTVLWRGKND 679

Query: 4581 ------GTRLAYDFFRHQNQKVPWAKDVWSACVPPKHAFILWLCIKKRLRTKDKVPYLD- 4739
                   TR  +   +  +  V W K VW     PK+A   WL I  RL T D++   + 
Sbjct: 680  VFKPHFSTRDTWHLIKATSSTVSWHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNS 739

Query: 4740 ---IDRACIFCHQHDESCPHLFFSCSVSNYLWNRIRRWLGITRAMSTIDSALKFIRK--E 4904
               +   C+ C  + ++  HLFFSCS ++ +W  + + +  TR  +     L  I    +
Sbjct: 740  SGSVSGNCVLCTNNSKTLEHLFFSCSYASTVWAALAKGIWKTRYSTRWSHLLTHISTHFQ 799

Query: 4905 GRGTGWRARAKRIALGSVVYHIWNERN 4985
             R  G+     R    + +YH+W ERN
Sbjct: 800  DRVEGF---LTRYIFQATIYHVWRERN 823