BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00042006
         (1172 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                     434   e-119
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   421   e-115
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   418   e-114
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   410   e-112
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]         401   e-109

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  434 bits (1115), Expect = e-119
 Identities = 208/370 (56%), Positives = 261/370 (70%)
 Frame = -1

Query: 1172 FEFSFDGGNISVYKNSVLIFKAYPCRGVYEVNVNVNNKRSIMNVDASMSSTNNLDKMSLW 993
            ++F       S+Y   +  F A    G+Y +N+  +    I N++     +N+++   +W
Sbjct: 384  YDFRSMNNGCSIYLRDMFYFHAPLVNGLYVLNLEAS---PIYNINTERQLSNDINPTFIW 440

Query: 992  HNRLGHINKTRITKLQADGILEAFGHEPDVECESCLMGKMTKAPFTGSGERGKDLLDLVH 813
            H RLGHINK R+ KL  DG+L +F  E    CESCL+GKMTKAPFTG  ER  DLL LVH
Sbjct: 441  HCRLGHINKKRMEKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLALVH 500

Query: 812  TDVCGPFRYCTKDNARYFVTFTDDISRYGYVYLIRHKFETFEVFKTFQNEVQNQLGKKIK 633
            TDVCGP     +   +YF+TFTDD SRYGY+YL+RHK E+FE FK FQNEVQN LGK IK
Sbjct: 501  TDVCGPMSSTARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIK 560

Query: 632  ILRSDRGGEYLSLEFRDHLRNCGIISQLTPPGTPQHNGVAERRNRTLLDMVRSMMSRASL 453
             LRSDRGGEY+S EF +HL++CGI+ QLTPPGTPQ NGV+ERRNRTLLDMVRSMMS++ L
Sbjct: 561  FLRSDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDL 620

Query: 452  PIRFWGYALETAARILNLVPTKKVSKTPYETWFGKTPSLKYLRVWGCEAYVRRETQDKLE 273
            P+ FWGYALETAA  LN VP+K V KTPYE W G+ PSL +L++WGCEAYV+R   DKL 
Sbjct: 621  PLSFWGYALETAALTLNRVPSKSVEKTPYEIWTGQPPSLSFLKIWGCEAYVKRLQSDKLT 680

Query: 272  PRSEKVVFIGYPTTSYGYIFYKPSENKVFVSRGAVFLERNMLLKEASGSRIDLEEIPEST 93
            P+S+K   +GYP  + GY FY   + KVFV+R  VFLE+  L +  SG R+ LEE+ E+ 
Sbjct: 681  PKSDKCFVVGYPKETKGYYFYNREQAKVFVARHGVFLEKEFLSRRVSGIRVHLEEVQETP 740

Query: 92   EPIVDTSEPQ 63
            E +  T+EPQ
Sbjct: 741  ETVSATTEPQ 750


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  421 bits (1081), Expect = e-115
 Identities = 200/334 (59%), Positives = 241/334 (72%)
 Frame = -1

Query: 1070 VNNKRSIMNVDASMSSTNNLDKMSLWHNRLGHINKTRITKLQADGILEAFGHEPDVECES 891
            +N    I N+      +N+L+   LWH RLGHIN+  I KL +DG+L +F +E    CES
Sbjct: 59   LNQSMPIYNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCES 118

Query: 890  CLMGKMTKAPFTGSGERGKDLLDLVHTDVCGPFRYCTKDNARYFVTFTDDISRYGYVYLI 711
            CL+GKMTKAPFTG  ER  DLL L+HTDVCGP     + N +YF+TFTDD SRYGYVYL+
Sbjct: 119  CLLGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLM 178

Query: 710  RHKFETFEVFKTFQNEVQNQLGKKIKILRSDRGGEYLSLEFRDHLRNCGIISQLTPPGTP 531
            +HK ++FE FK FQNEVQNQ GK IK LRSDRGGEYLS  F DHLR CGI+SQLTPPGTP
Sbjct: 179  KHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTP 238

Query: 530  QHNGVAERRNRTLLDMVRSMMSRASLPIRFWGYALETAARILNLVPTKKVSKTPYETWFG 351
            Q NGV+ERRNRTLLDMVRSMMS   LP  FWGYALET+A +LN  P+K V KTPYE W G
Sbjct: 239  QWNGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVEKTPYEIWTG 298

Query: 350  KTPSLKYLRVWGCEAYVRRETQDKLEPRSEKVVFIGYPTTSYGYIFYKPSENKVFVSRGA 171
            K P+L +L++WGCE+Y +R   DKL P+S+K  F+GYP  + GY FY P++NKVFV R  
Sbjct: 299  KVPNLSFLKIWGCESYAKRLITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFVVRNG 358

Query: 170  VFLERNMLLKEASGSRIDLEEIPESTEPIVDTSE 69
             FLER  L K  SGS++ LEE+ E    +  + E
Sbjct: 359  AFLEREFLSKGTSGSKVLLEEVREPQGDVPTSQE 392


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  418 bits (1075), Expect = e-114
 Identities = 211/369 (57%), Positives = 257/369 (69%)
 Frame = -1

Query: 1163 SFDGGNISVYKNSVLIFKAYPCRGVYEVNVNVNNKRSIMNVDASMSSTNNLDKMSLWHNR 984
            S D G  SVY N +  F A    G+Y VN++     SI N++A     N+L+   +WH R
Sbjct: 864  SVDNG-CSVYYNDIFYFHAPMMSGLYIVNLD---GCSIYNINAKRQGPNDLNPTFIWHCR 919

Query: 983  LGHINKTRITKLQADGILEAFGHEPDVECESCLMGKMTKAPFTGSGERGKDLLDLVHTDV 804
            LGHIN+ R+ KL  DG+L +   E    CESCL+GKMTKAPFTG  ER  +LL LVHTDV
Sbjct: 920  LGHINEKRMEKLHRDGLLHSLDFESFETCESCLLGKMTKAPFTGQSERTSELLVLVHTDV 979

Query: 803  CGPFRYCTKDNARYFVTFTDDISRYGYVYLIRHKFETFEVFKTFQNEVQNQLGKKIKILR 624
            CGP     +    YF+TFTDD SRYGYVYL+RHK E+FE FK FQNEVQN L K IK LR
Sbjct: 980  CGPMSSTARCGFGYFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNEVQNHLRKTIKYLR 1039

Query: 623  SDRGGEYLSLEFRDHLRNCGIISQLTPPGTPQHNGVAERRNRTLLDMVRSMMSRASLPIR 444
            SD GGEYLSLEF +HL+ CGI+ QLTPPGTPQ NGV+ERRNRTLL+MVRSMMS+ +L + 
Sbjct: 1040 SDHGGEYLSLEFGNHLKGCGIVPQLTPPGTPQWNGVSERRNRTLLNMVRSMMSQTNLLLS 1099

Query: 443  FWGYALETAARILNLVPTKKVSKTPYETWFGKTPSLKYLRVWGCEAYVRRETQDKLEPRS 264
            FWGYALETAA  LN VP+K V KTPYE W GK PSL +L++WGCE YV+R   DKL P+S
Sbjct: 1100 FWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKS 1159

Query: 263  EKVVFIGYPTTSYGYIFYKPSENKVFVSRGAVFLERNMLLKEASGSRIDLEEIPESTEPI 84
             K  F+GYP  + GY  Y   E KVFV+R  VFL++  + ++ SGS + LEEI E+ E  
Sbjct: 1160 NKCFFVGYPKETKGYYLYNREEGKVFVARHGVFLKKEFISRKDSGSIVRLEEIQETPENA 1219

Query: 83   VDTSEPQPA 57
              +++PQ A
Sbjct: 1220 STSTQPQQA 1228


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
            gi|62701883|gb|AAX92956.1| retrotransposon protein,
            putative, Ty1-copia sub-class [Oryza sativa Japonica
            Group] gi|108864259|gb|ABA92827.2| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1184

 Score =  410 bits (1053), Expect = e-112
 Identities = 200/341 (58%), Positives = 241/341 (70%)
 Frame = -1

Query: 1142 SVYKNSVLIFKAYPCRGVYEVNVNVNNKRSIMNVDASMSSTNNLDKMSLWHNRLGHINKT 963
            SVY N +  F A    G+Y VN+N     S+ N++A     N+L+   +WH RLGHIN+ 
Sbjct: 370  SVYYNDIFYFHAPMMSGLYIVNLN---GYSVYNINAKRQRPNDLNPTFIWHCRLGHINEK 426

Query: 962  RITKLQADGILEAFGHEPDVECESCLMGKMTKAPFTGSGERGKDLLDLVHTDVCGPFRYC 783
            R+ K+  DG+L +F  E    CESCL+GKMTKAPFTG  ER  +LL LVHTDVCGP    
Sbjct: 427  RMEKIHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLALVHTDVCGPMSST 486

Query: 782  TKDNARYFVTFTDDISRYGYVYLIRHKFETFEVFKTFQNEVQNQLGKKIKILRSDRGGEY 603
             +    YF TFTDD SRYGYVYL+RHK E+FE FK F NEVQN LGK IK LRSDRGGEY
Sbjct: 487  ARGGFGYFFTFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGKTIKYLRSDRGGEY 546

Query: 602  LSLEFRDHLRNCGIISQLTPPGTPQHNGVAERRNRTLLDMVRSMMSRASLPIRFWGYALE 423
            LSLEF +HL+ CGI+ QLTPPGTPQ NGV+E RNRTLLDMVRSMMS+ +L + FWGYALE
Sbjct: 547  LSLEFGNHLKECGIVPQLTPPGTPQWNGVSEWRNRTLLDMVRSMMSQTNLLLSFWGYALE 606

Query: 422  TAARILNLVPTKKVSKTPYETWFGKTPSLKYLRVWGCEAYVRRETQDKLEPRSEKVVFIG 243
            T A  LN VP+K V KTPYE W GK PSL +L++WGCE YV+R   DKL P+S+K  F+G
Sbjct: 607  TTAFTLNSVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSDKCFFVG 666

Query: 242  YPTTSYGYIFYKPSENKVFVSRGAVFLERNMLLKEASGSRI 120
            YP  + GY FY   E KVFV+R  VFLE+  + ++  GS +
Sbjct: 667  YPKETKGYYFYNQEEGKVFVARHGVFLEKEFISRKDIGSML 707


>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]
          Length = 873

 Score =  401 bits (1030), Expect = e-109
 Identities = 195/333 (58%), Positives = 238/333 (71%)
 Frame = -1

Query: 1061 KRSIMNVDASMSSTNNLDKMSLWHNRLGHINKTRITKLQADGILEAFGHEPDVECESCLM 882
            KR+  N++A     N+L+   +WH RLGHIN+ R+ KL  DG+L +F  E     E CL+
Sbjct: 212  KRNFYNINAKRQRPNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETYEFCLL 271

Query: 881  GKMTKAPFTGSGERGKDLLDLVHTDVCGPFRYCTKDNARYFVTFTDDISRYGYVYLIRHK 702
            GKMTKAPFTG  ER  +LL LVH DVC P     +    YF+TFTDD SRY YVYL+RHK
Sbjct: 272  GKMTKAPFTGQSERSSELLGLVHIDVCEPMSSTARGGFGYFITFTDDFSRYVYVYLMRHK 331

Query: 701  FETFEVFKTFQNEVQNQLGKKIKILRSDRGGEYLSLEFRDHLRNCGIISQLTPPGTPQHN 522
             E+FE FK FQNEVQN LGK IK LRSDRGGEYLSLEF +HL+ CGI+ QLTPPGTPQ N
Sbjct: 332  SESFEKFKEFQNEVQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGIVPQLTPPGTPQWN 391

Query: 521  GVAERRNRTLLDMVRSMMSRASLPIRFWGYALETAARILNLVPTKKVSKTPYETWFGKTP 342
             V+ERRNRTLLDMV+SMMS+  LP+ FWGYALETAA  LN VP+K V KT YE W GK P
Sbjct: 392  RVSERRNRTLLDMVQSMMSQTDLPLCFWGYALETAAFTLNRVPSKSVDKTSYEIWTGKRP 451

Query: 341  SLKYLRVWGCEAYVRRETQDKLEPRSEKVVFIGYPTTSYGYIFYKPSENKVFVSRGAVFL 162
            SL +L++WGCE YV+R   DKL P+S+K  F+GYP  + GY FY   E KVFV+R +VFL
Sbjct: 452  SLSFLKIWGCEVYVKRLQSDKLTPKSDKCFFVGYPKETKGYYFYNREEGKVFVARHSVFL 511

Query: 161  ERNMLLKEASGSRIDLEEIPESTEPIVDTSEPQ 63
            E+  + ++ SGS +  EEI E+ E    +++PQ
Sbjct: 512  EKEFISRKDSGSMVRPEEIQETPENASTSTQPQ 544