BLASTX nr result

ID: Atractylodes22_contig00025352 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00025352
         (235 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEL30343.1| RNA-directed DNA polymerase [Arachis hypogaea]          51   3e-08
ref|XP_003626157.1| ATP-binding domain-containing protein [Medic...    50   5e-07
gb|AAT40504.2| Polyprotein, putative [Solanum demissum]                56   3e-06
gb|AAT40500.1| Putative reverse transcriptase, identical [Solanu...    56   3e-06
ref|XP_003613498.1| Elongation factor 1-alpha [Medicago truncatu...    47   8e-06

>gb|AEL30343.1| RNA-directed DNA polymerase [Arachis hypogaea]
          Length = 562

 Score = 51.2 bits (121), Expect(2) = 3e-08
 Identities = 20/36 (55%), Positives = 28/36 (77%)
 Frame = +3

Query: 126 EELRVVPITDKLIKGRLRWFGHIKRRPRSAPVRRVE 233
           E + V PI +K+++ RLRWFGH++RRP   PVRRV+
Sbjct: 456 ERVGVAPIVEKIVESRLRWFGHVRRRPIEHPVRRVD 491



 Score = 31.6 bits (70), Expect(2) = 3e-08
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 46  LEVAEIRMLRWTCGRTLLDRI 108
           L VAE++MLRW  G T LD+I
Sbjct: 429 LSVAEVKMLRWMSGHTRLDKI 449


>ref|XP_003626157.1| ATP-binding domain-containing protein [Medicago truncatula]
           gi|355501172|gb|AES82375.1| ATP-binding
           domain-containing protein [Medicago truncatula]
          Length = 863

 Score = 50.4 bits (119), Expect(2) = 5e-07
 Identities = 21/36 (58%), Positives = 28/36 (77%)
 Frame = +3

Query: 126 EELRVVPITDKLIKGRLRWFGHIKRRPRSAPVRRVE 233
           E + V PI +KL++ RLRWFGH++RRP  A VRRV+
Sbjct: 724 ERVGVAPIVEKLVENRLRWFGHVERRPVDAVVRRVD 759



 Score = 28.1 bits (61), Expect(2) = 5e-07
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 40  SWLEVAEIRMLRWTCGRTLLDRI 108
           S +  AE+RMLRW  G++  DRI
Sbjct: 695 SQVSAAEMRMLRWMSGKSRQDRI 717


>gb|AAT40504.2| Polyprotein, putative [Solanum demissum]
          Length = 868

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
 Frame = +3

Query: 3   SECWPLRKSHEWKLVGGG*DKDVEM------DVRSDIVG*DLN*VFWEELRVVPITDKLI 164
           +ECWP++ +H  K+       ++ M        RSD +    N V  E++ V  + DKL 
Sbjct: 566 AECWPVKNAHVHKMHVA----EMRMLRWMCGHTRSDKIR---NEVIREKVGVASVVDKLR 618

Query: 165 KGRLRWFGHIKRRPRSAPVRRVE 233
           + RLRWFGH+KRR   APVRR E
Sbjct: 619 EARLRWFGHVKRRSADAPVRRCE 641


>gb|AAT40500.1| Putative reverse transcriptase, identical [Solanum demissum]
          Length = 213

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
 Frame = +3

Query: 3   SECWPLRKSHEWKLVGGG*DKDVEM------DVRSDIVG*DLN*VFWEELRVVPITDKLI 164
           +ECWP++ +H  K+       ++ M        RSD +    N V  E++ V  + DKL 
Sbjct: 98  AECWPVKNAHVHKMHVA----EMRMLRWMCGHTRSDKIR---NEVIREKVGVASVVDKLR 150

Query: 165 KGRLRWFGHIKRRPRSAPVRRVE 233
           + RLRWFGH+KRR   APVRR E
Sbjct: 151 EARLRWFGHVKRRSADAPVRRCE 173


>ref|XP_003613498.1| Elongation factor 1-alpha [Medicago truncatula]
           gi|355514833|gb|AES96456.1| Elongation factor 1-alpha
           [Medicago truncatula]
          Length = 1488

 Score = 47.4 bits (111), Expect(2) = 8e-06
 Identities = 20/36 (55%), Positives = 26/36 (72%)
 Frame = +3

Query: 126 EELRVVPITDKLIKGRLRWFGHIKRRPRSAPVRRVE 233
           E   V PI +KL++ RLRWFGH++RRP  A  RRV+
Sbjct: 617 ERAGVAPIVEKLVENRLRWFGHVERRPVDAFARRVD 652



 Score = 26.9 bits (58), Expect(2) = 8e-06
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 43  WLEVAEIRMLRWTCGRT 93
           ++ VAE+RMLRW  G+T
Sbjct: 589 YVSVAEMRMLRWMSGKT 605


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