BLASTX nr result

ID: Atractylodes22_contig00024372 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00024372
         (551 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD66732.1| orf147a [Beta vulgaris subsp. vulgaris] gi|54606...    77   2e-12
gb|ABD33259.2| non-LTR retroelement reverse transcriptase-like p...    72   6e-11
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    67   2e-09
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript...    66   3e-09
ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204...    66   4e-09

>dbj|BAD66732.1| orf147a [Beta vulgaris subsp. vulgaris] gi|54606753|dbj|BAD66776.1|
           orf147a [Beta vulgaris subsp. vulgaris]
          Length = 147

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 40/122 (32%), Positives = 66/122 (54%)
 Frame = +3

Query: 3   FIYLLAIRNGLATQGKLIAWKLIPPDSVCPLCAAEPDSIEHLFFGCRFSGEVWHGIKVIG 182
           FI  L I + LAT  +L  + ++  D +C LC    ++ +HLFF C FS E+W  +    
Sbjct: 16  FITWLTILDRLATCDRLQKFGIVC-DQLCVLCGNVDETRDHLFFVCEFSYEIWSSLLCWL 74

Query: 183 GMEQMPDSWGDINNLMQQHCSKLDALHCIQMLCLAASIYHVWRERNNRIFRKVVHGAADI 362
           G+++    W  +  L   HC    +  CI  +C++ ++Y +WRERN R F++V     +I
Sbjct: 75  GIQRTAGDWQGV--LQSAHCQSNSSASCIFRMCISIAVYFIWRERNARKFQQVKMKPDEI 132

Query: 363 IR 368
           +R
Sbjct: 133 VR 134


>gb|ABD33259.2| non-LTR retroelement reverse transcriptase-like protein, related
           [Medicago truncatula]
          Length = 196

 Score = 72.0 bits (175), Expect = 6e-11
 Identities = 30/106 (28%), Positives = 53/106 (50%)
 Frame = +3

Query: 78  DSVCPLCAAEPDSIEHLFFGCRFSGEVWHGIKVIGGMEQMPDSWGDINNLMQQHCSKLDA 257
           D VC LC  E ++  HLFF C ++  VW G+     M     +W  I   +Q HC+  + 
Sbjct: 75  DQVCVLCTKENETHSHLFFSCDYADAVWKGVMRWMNMTVNTSNWHSILQYIQSHCNSNNG 134

Query: 258 LHCIQMLCLAASIYHVWRERNNRIFRKVVHGAADIIRMINEEVRLK 395
           +H    + L+ ++Y +W+ERN+R F+        ++  I  +  ++
Sbjct: 135 MHQAHRMVLSETLYVIWKERNDRKFQNCYRSVQQLLNQIKMDAYIR 180


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
 Frame = +3

Query: 3    FIYLLAIRNGLATQGKLIAWKLIPPDSVCPLCAAEPDSIEHLFFGCRFSGEVWHGIKVIG 182
            F   LAIRN L+T  +++ W    P + C  C++  ++ +HLFF C +S E+W  I    
Sbjct: 793  FCAWLAIRNRLSTGDRMMTWNNGTP-TTCVFCSSPMETRDHLFFQCCYSSEIWTSIAKNV 851

Query: 183  GMEQMPDSWGDINNLMQQHCSKLDALHC-IQMLCLAASIYHVWRERNNRIFRKVVHGAAD 359
              ++    W  + N +    S+ D +   +       SI+ +WRERN+R   +    A++
Sbjct: 852  YKDRFSTKWSAVVNYISD--SQPDRIQSFLSRYTFQVSIHSIWRERNSRRHGEKSRSASN 909

Query: 360  IIRMINEEVR 389
            +IR I++ +R
Sbjct: 910  LIRQIDKTIR 919


>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 323

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 45/132 (34%), Positives = 65/132 (49%)
 Frame = +3

Query: 3   FIYLLAIRNGLATQGKLIAWKLIPPDSVCPLCAAEPDSIEHLFFGCRFSGEVWHGIKVIG 182
           FI  +A    L T+ +L  W L  P +VC LC    ++ +HLFF C+FS E+W    +  
Sbjct: 169 FICWVAAWKRLHTRDRLTQWGLNIP-TVCVLCNVVDETHDHLFFQCQFSNEIWSFFMIRA 227

Query: 183 GMEQMPDSWGDINNLMQQHCSKLDALHCIQMLCLAASIYHVWRERNNRIFRKVVHGAADI 362
           GM   P  +G I  L  +  S    L  I  L   AS+Y +WRERN RI          I
Sbjct: 228 GMTP-PHLFGPI-LLWLKSASSSKNLSLIIKLLFQASVYLIWRERNCRIHTTHSRTPPTI 285

Query: 363 IRMINEEVRLKI 398
           I+ + + +R ++
Sbjct: 286 IKEVQQLIRARL 297


>ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204314 [Cucumis sativus]
          Length = 282

 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
 Frame = +3

Query: 3   FIYLLAIRNGLATQGKLIAWKLIPPDSVCPLCAAEPDSIEHLFFGCRFSGEVWHGIKVIG 182
           F   LAIR+ L T+G+L  W    P S C LC    +S +HLFF C F  E+W  I ++ 
Sbjct: 141 FCAWLAIRDRLGTRGRLSRWDRSIPLS-CLLCGGNYESRDHLFFSCHFGWEIWSRILLLK 199

Query: 183 GMEQMPDSWG-DINNLMQQHCSKLDALHCIQMLCLAASIYHVWRERNNRIFRKVVHGAAD 359
                   WG +++ +  Q   K      +  L   A+IY +W+ERN+R+    +     
Sbjct: 200 SSSHRTGYWGVELSWIYNQGIGK-SVRRKLWRLLWCATIYFIWQERNHRLHGGSIREPLV 258

Query: 360 IIRMINEEVRLK 395
           + ++I   ++++
Sbjct: 259 VFQLIRSCIKVR 270


Top