BLASTX nr result
ID: Atractylodes22_contig00022159
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes22_contig00022159
(1349 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA22288.1| polyprotein [Oryza australiensis] 247 1e-74
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 229 3e-68
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 220 1e-67
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 220 1e-67
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 219 9e-67
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 247 bits (630), Expect(2) = 1e-74
Identities = 122/288 (42%), Positives = 180/288 (62%)
Frame = +2
Query: 212 NTTVPNLSLRYVLENDKLNGINFLNWFRKLRIVLRHEKKLYILDGPVPDVPPSNASRAVR 391
NTT +LR +LE +KLNG NF++W+R LRIVL+ E+K Y+L+ P P+ P+NA+ R
Sbjct: 4 NTTPSTFNLRSILEKEKLNGTNFMDWYRNLRIVLKQERKEYVLEVPYPEELPNNATATAR 63
Query: 392 DAYEKHVNDSVEVACLMLVTMNSDLQKDLELLEAYDIITTLKKMFRQQVSQERYETMKAF 571
+EKH ND+++++CLML TM+ +LQK E +A+ I L+ MF Q ER+ T K+
Sbjct: 64 RGFEKHTNDALDISCLMLATMSPELQKQYESSDAHTTIQGLRGMFENQARDERFNTSKSL 123
Query: 572 LECKMVEGQSVSFYVLKMKSYVDQLERLDFPISQEFATDLILNSLTSAYDQFVMNYNMNN 751
C++VEG VS +V+KM Y++ LE+L FP+SQE ATD+IL SL +++ F++NY+MNN
Sbjct: 124 FACRLVEGNPVSPHVIKMIGYIESLEKLGFPLSQELATDVILQSLPPSFEPFILNYHMNN 183
Query: 752 MDKTIMELHEMLKTTEQSATSSKPSQVLTIREGRITXXXXXXXXXXXXEAQVGPSTXXXX 931
MD+T+ ELH MLKT E+S + ++ R ++ ++
Sbjct: 184 MDRTLAELHGMLKTVEESIQKNGHHVMMMQNAKRKPPVKKLCTKRKLTPDEIASAS---N 240
Query: 932 XXXXXXXXXXXDAVCYHCNKTGHWRRNCPVYLEELKQKKIGETSASGV 1075
DAVC++C +TGHW+RNC Y+E+LK KK TSASG+
Sbjct: 241 AKKGKKGSAASDAVCFYCKETGHWKRNCKKYMEDLK-KKQSTTSASGI 287
Score = 60.8 bits (146), Expect(2) = 1e-74
Identities = 32/84 (38%), Positives = 49/84 (58%)
Frame = +3
Query: 1083 SKELKKGELDLQVVNRQRVAIVSVGNYELLVPNGMYLILDNYCYAPGLIRNIVSFDRLHK 1262
S+ L++GE++L+V N VA V+VG L +P+G+ L L+N P L +N++S L
Sbjct: 322 SRGLRRGEVNLRVGNGASVATVAVGTVPLHLPSGLVLELNNCYCVPTLCQNVISASCLQA 381
Query: 1263 SGFDFGFANGCISVFRNGMLYFEA 1334
G+DF N S++ M YF A
Sbjct: 382 EGYDFRSMNNGCSIYLRDMFYFHA 405
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 229 bits (585), Expect(2) = 3e-68
Identities = 115/283 (40%), Positives = 167/283 (59%)
Frame = +2
Query: 227 NLSLRYVLENDKLNGINFLNWFRKLRIVLRHEKKLYILDGPVPDVPPSNASRAVRDAYEK 406
+ +LR +L+ +KLNG NF +W R LRIVLR +KK ++L+ P+PDVP NA+ ++ AY+K
Sbjct: 95 SFALRSILKKEKLNGTNFADWSRNLRIVLRQDKKEHVLEEPIPDVPADNAAATLKSAYKK 154
Query: 407 HVNDSVEVACLMLVTMNSDLQKDLELLEAYDIITTLKKMFRQQVSQERYETMKAFLECKM 586
++S++V+CLML MNSDLQK E +EAYD+I LK MF Q +R+E K CK+
Sbjct: 155 ACDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVALKGMFETQARTKRFEISKNLFSCKL 214
Query: 587 VEGQSVSFYVLKMKSYVDQLERLDFPISQEFATDLILNSLTSAYDQFVMNYNMNNMDKTI 766
EG VS +++KM Y LE+L FP+SQE ATDLIL SL ++Y QF++N++MN +DK +
Sbjct: 215 AEGSPVSPHMIKMVGYTQSLEKLGFPLSQELATDLILASLPASYGQFILNFHMNGLDKNL 274
Query: 767 MELHEMLKTTEQSATSSKPSQVLTIREGRITXXXXXXXXXXXXEAQVGPSTXXXXXXXXX 946
ELH +LKT E S ++ + + G T
Sbjct: 275 TELHMLLKTAEDSIKKINSHVMMVQKSTSFKKKARTWVKGKGKKVLDGIQTNKPKLKTKS 334
Query: 947 XXXXXXDAVCYHCNKTGHWRRNCPVYLEELKQKKIGETSASGV 1075
+ C++C + GHW+RNC YL +LK+ + S SG+
Sbjct: 335 GPTQENE--CFYCKEPGHWKRNCKKYLADLKKNGGTKPSTSGI 375
Score = 57.0 bits (136), Expect(2) = 3e-68
Identities = 28/81 (34%), Positives = 47/81 (58%)
Frame = +3
Query: 1083 SKELKKGELDLQVVNRQRVAIVSVGNYELLVPNGMYLILDNYCYAPGLIRNIVSFDRLHK 1262
++ + +GE+DL+V N+ +VA +S L++P+G + L+N Y P + RNI+S L
Sbjct: 410 NRRVARGEMDLRVGNKAKVAALSAETLPLVLPSGFIMELNNCYYVPAMSRNIISASCLMT 469
Query: 1263 SGFDFGFANGCISVFRNGMLY 1325
G+ F + S+F N M Y
Sbjct: 470 EGYKFIIEDHGCSIFLNDMFY 490
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 220 bits (561), Expect(2) = 1e-67
Identities = 116/295 (39%), Positives = 176/295 (59%), Gaps = 12/295 (4%)
Frame = +2
Query: 227 NLSLRYVLENDKLNGINFLNWFRKLRIVLRHEKKLYILDGPVPDVPPSNASRAVRDAYEK 406
N +LRY+LE +KL N ++W+R LRIVLR E K ++L P P P+NA A R +E+
Sbjct: 100 NFNLRYILEKEKLTRTNIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHER 159
Query: 407 HVNDSVEVACLMLVTMNSDLQKDLELLEAYDIITTLKKMFRQQVSQERYETMKAFLECKM 586
+ ++++CLML TM+ +LQ+ E L+A+ IIT L+ MF Q ER+ T K+ C++
Sbjct: 160 RCKEYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRL 219
Query: 587 VEGQSVSFYVLKMKSYVDQLERLDFPISQEFATDLILNSLTSAYDQFVMNYNMNNMDKTI 766
EG VS +V+KM Y + L++L FP+S+E ATDLIL SL +++ F+MN+NMNN+++T+
Sbjct: 220 AEGNPVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTL 279
Query: 767 MELHEMLKTTEQSATSS----------KPSQVLTIREGRITXXXXXXXXXXXXEAQ-VGP 913
ELH MLKT E+S + KP+ + ++ ++ + Q GP
Sbjct: 280 AELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTKVQKTGP 339
Query: 914 STXXXXXXXXXXXXXXXDAVCYHCNKTGHWRRNCPVYLEELKQK-KIGETSASGV 1075
+ DA C+ +TGHW+RNC YLE+LKQK + G++S SG+
Sbjct: 340 A---------------KDAECFFYKETGHWKRNCKKYLEQLKQKQQDGKSSTSGI 379
Score = 63.9 bits (154), Expect(2) = 1e-67
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +3
Query: 1083 SKELKKGELDLQVVNRQRVAIVSVGNYELLVPNGMYLILDNYCYAPGLIRNIVSFDRLHK 1262
S+ L +G +D++V N +RVA+V+VG L +P+G+ L L+N P L +N++S L
Sbjct: 414 SRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGLVLELNNCYCIPALCKNVISASCLQA 473
Query: 1263 SGFDF-GFANGCISVFRNGMLYFEA 1334
G+ F NGC SV+ N + YF A
Sbjct: 474 EGYGFRSMDNGC-SVYYNDLFYFHA 497
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 220 bits (561), Expect(2) = 1e-67
Identities = 116/295 (39%), Positives = 176/295 (59%), Gaps = 12/295 (4%)
Frame = +2
Query: 227 NLSLRYVLENDKLNGINFLNWFRKLRIVLRHEKKLYILDGPVPDVPPSNASRAVRDAYEK 406
N +LRY+LE +KL N ++W+R LRIVLR E K ++L P P P+NA A R +E+
Sbjct: 100 NFNLRYILEKEKLTRTNIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHER 159
Query: 407 HVNDSVEVACLMLVTMNSDLQKDLELLEAYDIITTLKKMFRQQVSQERYETMKAFLECKM 586
+ ++++CLML TM+ +LQ+ E L+A+ IIT L+ MF Q ER+ T K+ C++
Sbjct: 160 RCKEYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRL 219
Query: 587 VEGQSVSFYVLKMKSYVDQLERLDFPISQEFATDLILNSLTSAYDQFVMNYNMNNMDKTI 766
EG VS +V+KM Y + L++L FP+S+E ATDLIL SL +++ F+MN+NMNN+++T+
Sbjct: 220 AEGNPVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRTL 279
Query: 767 MELHEMLKTTEQSATSS----------KPSQVLTIREGRITXXXXXXXXXXXXEAQ-VGP 913
ELH MLKT E+S + KP+ + ++ ++ + Q GP
Sbjct: 280 AELHGMLKTAEESIKKNSNHVMVMHKRKPNNKKSGQKRKLNSDEITSTSNSKTKVQKTGP 339
Query: 914 STXXXXXXXXXXXXXXXDAVCYHCNKTGHWRRNCPVYLEELKQK-KIGETSASGV 1075
+ DA C+ +TGHW+RNC YLE+LKQK + G++S SG+
Sbjct: 340 A---------------KDAECFFYKETGHWKRNCKKYLEQLKQKQQDGKSSTSGI 379
Score = 63.9 bits (154), Expect(2) = 1e-67
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +3
Query: 1083 SKELKKGELDLQVVNRQRVAIVSVGNYELLVPNGMYLILDNYCYAPGLIRNIVSFDRLHK 1262
S+ L +G +D++V N +RVA+V+VG L +P+G+ L L+N P L +N++S L
Sbjct: 414 SRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGLVLELNNCYCIPALCKNVISASCLQA 473
Query: 1263 SGFDF-GFANGCISVFRNGMLYFEA 1334
G+ F NGC SV+ N + YF A
Sbjct: 474 EGYGFRSMDNGC-SVYYNDLFYFHA 497
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 219 bits (558), Expect(2) = 9e-67
Identities = 115/284 (40%), Positives = 173/284 (60%), Gaps = 1/284 (0%)
Frame = +2
Query: 227 NLSLRYVLENDKLNGINFLNWFRKLRIVLRHEKKLYILDGPVPDVPPSNASRAVRDAYEK 406
+ +LR +LE +KL G N ++W+R LRIVLR E K ++L P P P+NA A R +EK
Sbjct: 8 SFNLRSILEKEKLTGTNIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHEK 67
Query: 407 HVNDSVEVACLMLVTMNSDLQKDLELLEAYDIITTLKKMFRQQVSQERYETMKAFLECKM 586
ND ++++CLML TM+ +LQ+ E L+A+ IIT L+ MF Q +R+ T K+ C++
Sbjct: 68 RCNDYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAKRFNTSKSLFACRL 127
Query: 587 VEGQSVSFYVLKMKSYVDQLERLDFPISQEFATDLILNSLTSAYDQFVMNYNMNNMDKTI 766
EG VS +V+KM Y + LE+L FP+SQE ATDLIL SL +++ F++N+NMNNM++T+
Sbjct: 128 AEGNPVSPHVIKMIGYNETLEKLGFPLSQELATDLILQSLPPSFEPFILNFNMNNMNRTL 187
Query: 767 MELHEMLKTTEQSATSSKPSQVLTIREGRITXXXXXXXXXXXXEAQVGPSTXXXXXXXXX 946
+L MLKT E+S + + V+ + + + + GP+
Sbjct: 188 TKLPGMLKTAEESIKKNS-NHVMVMHKRK------------PNNKKSGPA---------- 224
Query: 947 XXXXXXDAVCYHCNKTGHWRRNCPVYLEELKQK-KIGETSASGV 1075
DA C+ C + GHW+RNC YLE+LKQK + G++S SG+
Sbjct: 225 -----KDAECFFCKEAGHWKRNCKKYLEQLKQKQQDGKSSTSGI 263
Score = 62.4 bits (150), Expect(2) = 9e-67
Identities = 32/84 (38%), Positives = 49/84 (58%)
Frame = +3
Query: 1083 SKELKKGELDLQVVNRQRVAIVSVGNYELLVPNGMYLILDNYCYAPGLIRNIVSFDRLHK 1262
S+ L +GE+D++V N RVA V+VG L +P+ + L L+NY P L +N++S L
Sbjct: 298 SRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSRLVLELNNYYCIPALCKNVISASCLQA 357
Query: 1263 SGFDFGFANGCISVFRNGMLYFEA 1334
G+ F + SV+ N + YF A
Sbjct: 358 EGYGFRSVDNDCSVYYNDIFYFHA 381