BLASTX nr result

ID: Atractylodes22_contig00020763 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00020763
         (972 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-a...   221   2e-55
ref|XP_004134546.1| PREDICTED: small nuclear ribonucleoprotein-a...   218   1e-54
ref|XP_002529898.1| small nuclear ribonucleoprotein-associated p...   213   6e-53
ref|XP_002529896.1| small nuclear ribonucleoprotein-associated p...   213   6e-53
ref|XP_002332199.1| predicted protein [Populus trichocarpa] gi|2...   213   7e-53

>ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
           [Vitis vinifera] gi|147774905|emb|CAN61706.1|
           hypothetical protein VITISV_001610 [Vitis vinifera]
          Length = 276

 Score =  221 bits (564), Expect = 2e-55
 Identities = 118/166 (71%), Positives = 125/166 (75%), Gaps = 1/166 (0%)
 Frame = -3

Query: 820 LQFINYRMRITIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPAKGAKKNEEREDRRTL 641
           LQ+INYRMR+TIQDGRQLVGKFMAFDRHMNLV+GDCEEFRKLPPAKG KKNEERE+RRTL
Sbjct: 10  LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKNEEREERRTL 68

Query: 640 GLVLLRGEEVISMTVEGPPPPDENXXXXXXXXXXXXXXXXXXXXXGIPTAPLIQAQXXXX 461
           GLVLLRGEEVISMTVEGPPPP+E+                     GIPTAPLIQAQ    
Sbjct: 69  GLVLLRGEEVISMTVEGPPPPEESRAKAVGAAAMAGPGIGRAAGRGIPTAPLIQAQPGLA 128

Query: 460 XXXXXXXXXXXGMMQPQISRPPVPNMSAPPMNYPQAPVIR-PGQMP 326
                      GMMQPQISRPPVP +SAPPM YP APVIR PGQMP
Sbjct: 129 GPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMP 174


>ref|XP_004134546.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
           B'-like [Cucumis sativus]
           gi|449490639|ref|XP_004158663.1| PREDICTED: small
           nuclear ribonucleoprotein-associated protein B'-like
           [Cucumis sativus]
          Length = 284

 Score =  218 bits (556), Expect = 1e-54
 Identities = 113/166 (68%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
 Frame = -3

Query: 820 LQFINYRMRITIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPAKGAKKNEEREDRRTL 641
           LQ+INYRMR+TIQDGRQLVGKFMAFDRHMNLV+GDCEEFRKLPPAKG K NEER++RRTL
Sbjct: 10  LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTL 69

Query: 640 GLVLLRGEEVISMTVEGPPPPDENXXXXXXXXXXXXXXXXXXXXXGIPTAPLIQAQXXXX 461
           GLVLLRGEEVISMTVEGPPP +E+                     GIPTAPL+QAQ    
Sbjct: 70  GLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQPGLA 129

Query: 460 XXXXXXXXXXXGMMQPQISRPPVPNMSAPPMNYPQAPVIR-PGQMP 326
                      GMMQPQISRPPVP +SAPPM YP AP+IR PGQMP
Sbjct: 130 GPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMP 175


>ref|XP_002529898.1| small nuclear ribonucleoprotein-associated protein, putative
           [Ricinus communis] gi|223530625|gb|EEF32501.1| small
           nuclear ribonucleoprotein-associated protein, putative
           [Ricinus communis]
          Length = 275

 Score =  213 bits (542), Expect = 6e-53
 Identities = 115/167 (68%), Positives = 122/167 (73%), Gaps = 1/167 (0%)
 Frame = -3

Query: 820 LQFINYRMRITIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPAKGAKKNEEREDRRTL 641
           LQ INYRMR+TIQDGRQLVGKFMAFDRHMNLV+GDCEEFRKLPPAKG K NEEREDRRTL
Sbjct: 10  LQHINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEEREDRRTL 69

Query: 640 GLVLLRGEEVISMTVEGPPPPDENXXXXXXXXXXXXXXXXXXXXXGIPTAPLIQAQXXXX 461
           GLVLLRGEEVISMTVEGPPP +E+                     GIPTAPLIQAQ    
Sbjct: 70  GLVLLRGEEVISMTVEGPPPQEESRAKAVSATAVAGPGIGRAAGRGIPTAPLIQAQPGLA 129

Query: 460 XXXXXXXXXXXGMMQPQISRPPVPNMSAPPMNYPQAPVIR-PGQMPY 323
                      GMMQPQISRPPVP +SAPPM+YP  PVIR PGQM +
Sbjct: 130 GPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYP-PPVIRPPGQMAF 175


>ref|XP_002529896.1| small nuclear ribonucleoprotein-associated protein, putative
           [Ricinus communis] gi|223530623|gb|EEF32499.1| small
           nuclear ribonucleoprotein-associated protein, putative
           [Ricinus communis]
          Length = 275

 Score =  213 bits (542), Expect = 6e-53
 Identities = 115/167 (68%), Positives = 122/167 (73%), Gaps = 1/167 (0%)
 Frame = -3

Query: 820 LQFINYRMRITIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPAKGAKKNEEREDRRTL 641
           LQ INYRMR+TIQDGRQLVGKFMAFDRHMNLV+GDCEEFRKLPPAKG K NEEREDRRTL
Sbjct: 10  LQHINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEEREDRRTL 69

Query: 640 GLVLLRGEEVISMTVEGPPPPDENXXXXXXXXXXXXXXXXXXXXXGIPTAPLIQAQXXXX 461
           GLVLLRGEEVISMTVEGPPP +E+                     GIPTAPLIQAQ    
Sbjct: 70  GLVLLRGEEVISMTVEGPPPQEESRAKAVSATAVAGPGIGRAAGRGIPTAPLIQAQPGLA 129

Query: 460 XXXXXXXXXXXGMMQPQISRPPVPNMSAPPMNYPQAPVIR-PGQMPY 323
                      GMMQPQISRPPVP +SAPPM+YP  PVIR PGQM +
Sbjct: 130 GPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYP-PPVIRPPGQMAF 175


>ref|XP_002332199.1| predicted protein [Populus trichocarpa] gi|222875306|gb|EEF12437.1|
           predicted protein [Populus trichocarpa]
          Length = 289

 Score =  213 bits (541), Expect = 7e-53
 Identities = 115/174 (66%), Positives = 121/174 (69%), Gaps = 9/174 (5%)
 Frame = -3

Query: 820 LQFINYRMRITIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPAKGAKKNEEREDRRTL 641
           LQ+INYRMR+TIQDGRQLVGKFMAFDRHMNLV+GDCEEFRKLPPAKG K NEEREDRRTL
Sbjct: 10  LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEEREDRRTL 69

Query: 640 GLVLLRGEEVISMTVEGPPPPDENXXXXXXXXXXXXXXXXXXXXXGIPTAPLIQAQXXXX 461
           GLVLLRGEEVISMTVEGPPPP+E+                     GIPTAPLIQAQ    
Sbjct: 70  GLVLLRGEEVISMTVEGPPPPEESRAKAVSAAAASGPGLGRAAGRGIPTAPLIQAQPGLA 129

Query: 460 XXXXXXXXXXXGMMQPQISRPPVPNMSAPPMNYPQ--------APVIR-PGQMP 326
                      GMMQPQ  RPPVP  SAPPM YP         APV+R PGQMP
Sbjct: 130 GPVRGVGGPSPGMMQPQFMRPPVPQHSAPPMTYPASSAPPPGGAPVVRPPGQMP 183


Top