BLASTX nr result

ID: Atractylodes22_contig00020188 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00020188
         (425 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN65741.1| hypothetical protein VITISV_037758 [Vitis vinifera]   118   6e-25
ref|XP_002276575.1| PREDICTED: pentatricopeptide repeat-containi...   117   7e-25
ref|XP_002318926.1| predicted protein [Populus trichocarpa] gi|2...   115   4e-24
ref|XP_002329996.1| predicted protein [Populus trichocarpa] gi|2...   114   8e-24
emb|CBI39664.3| unnamed protein product [Vitis vinifera]              110   2e-22

>emb|CAN65741.1| hypothetical protein VITISV_037758 [Vitis vinifera]
          Length = 730

 Score =  118 bits (295), Expect = 6e-25
 Identities = 59/117 (50%), Positives = 80/117 (68%), Gaps = 2/117 (1%)
 Frame = +3

Query: 81  MIAKLPYSRLYGRIFTRPPLTAYVSSLSGANYVQTNPQHDQA--PPNSSEFEAKIQSLKN 254
           M  KL    L  RI    PL A +SS+S AN +Q  P+ DQ   PPN +EFE K Q L+N
Sbjct: 1   MAVKLSSLTLSRRIPKWVPLIASMSSISSANRIQAVPEIDQTKTPPNDNEFEPKFQFLRN 60

Query: 255 NLHPETLIHVLSSTHDLNSSLRLFKWASLQNRFRHTIDTYYHIIMRLGVASRVDEME 425
            L P+ LI VL +THDLNS++++FKWAS Q RFRHT DTY+ +I++LG+  ++++ME
Sbjct: 61  RLMPDDLIRVLDTTHDLNSAIKVFKWASRQKRFRHTADTYFRVILKLGMGGKIEDME 117


>ref|XP_002276575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62590-like [Vitis vinifera]
          Length = 730

 Score =  117 bits (294), Expect = 7e-25
 Identities = 59/117 (50%), Positives = 80/117 (68%), Gaps = 2/117 (1%)
 Frame = +3

Query: 81  MIAKLPYSRLYGRIFTRPPLTAYVSSLSGANYVQTNPQHDQA--PPNSSEFEAKIQSLKN 254
           M  KL    L  RI    PL A +SS+S AN +Q  P+ DQ   PPN +EFE K Q L+N
Sbjct: 1   MAVKLSSLTLSSRIPKWVPLIASMSSISCANRIQAVPEIDQTKTPPNDNEFEPKFQFLRN 60

Query: 255 NLHPETLIHVLSSTHDLNSSLRLFKWASLQNRFRHTIDTYYHIIMRLGVASRVDEME 425
            L P+ LI VL +THDLNS++++FKWAS Q RFRHT DTY+ +I++LG+  ++++ME
Sbjct: 61  RLMPDDLIRVLDTTHDLNSAIKVFKWASRQKRFRHTADTYFRVILKLGMGGKIEDME 117


>ref|XP_002318926.1| predicted protein [Populus trichocarpa] gi|222857302|gb|EEE94849.1|
           predicted protein [Populus trichocarpa]
          Length = 724

 Score =  115 bits (288), Expect = 4e-24
 Identities = 55/96 (57%), Positives = 74/96 (77%)
 Frame = +3

Query: 138 LTAYVSSLSGANYVQTNPQHDQAPPNSSEFEAKIQSLKNNLHPETLIHVLSSTHDLNSSL 317
           L +++SS+S  N +Q NP+ +Q  PN ++F+AKIQSL+N L P+ LI VL ST D+NS++
Sbjct: 17  LKSFISSVSCTNAIQINPEINQNAPNITDFDAKIQSLRNKLCPDYLIKVLKSTSDINSAV 76

Query: 318 RLFKWASLQNRFRHTIDTYYHIIMRLGVASRVDEME 425
           +LFKWASLQ RF HT DTYY II +LG+A  V+EME
Sbjct: 77  KLFKWASLQRRFNHTDDTYYWIIFKLGMAENVEEME 112


>ref|XP_002329996.1| predicted protein [Populus trichocarpa] gi|222871421|gb|EEF08552.1|
           predicted protein [Populus trichocarpa]
          Length = 725

 Score =  114 bits (285), Expect = 8e-24
 Identities = 52/96 (54%), Positives = 73/96 (76%)
 Frame = +3

Query: 138 LTAYVSSLSGANYVQTNPQHDQAPPNSSEFEAKIQSLKNNLHPETLIHVLSSTHDLNSSL 317
           L A++SS+S  N +Q NP+ +Q  PN  +F+ KIQSL+N L+P+ LI VL ST D+NS++
Sbjct: 17  LKAFISSVSCTNTIQINPEINQNTPNFPDFDVKIQSLRNKLYPDNLIKVLKSTSDVNSAV 76

Query: 318 RLFKWASLQNRFRHTIDTYYHIIMRLGVASRVDEME 425
           ++FKWA+LQ +F HT DTYY II +LG+A  V+EME
Sbjct: 77  KIFKWAALQRKFNHTADTYYWIIFKLGMAGNVEEME 112


>emb|CBI39664.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  110 bits (274), Expect = 2e-22
 Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 2/94 (2%)
 Frame = +3

Query: 150 VSSLSGANYVQTNPQHDQA--PPNSSEFEAKIQSLKNNLHPETLIHVLSSTHDLNSSLRL 323
           +SS+S AN +Q  P+ DQ   PPN +EFE K Q L+N L P+ LI VL +THDLNS++++
Sbjct: 1   MSSISCANRIQAVPEIDQTKTPPNDNEFEPKFQFLRNRLMPDDLIRVLDTTHDLNSAIKV 60

Query: 324 FKWASLQNRFRHTIDTYYHIIMRLGVASRVDEME 425
           FKWAS Q RFRHT DTY+ +I++LG+  ++++ME
Sbjct: 61  FKWASRQKRFRHTADTYFRVILKLGMGGKIEDME 94


Top