BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00004099
         (1374 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   351   3e-94
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   338   1e-90
ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|2...   305   2e-80
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   302   1e-79
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      283   1e-73

>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  351 bits (900), Expect = 3e-94
 Identities = 201/444 (45%), Positives = 267/444 (60%), Gaps = 36/444 (8%)
 Frame = +3

Query: 150  MGVGFRLNLKWGXXXXXXXXXXXXXXXXXTYASFKGKDINYDMARVSLPM----ESETSY 317
            MG+GFRLNLKW                  +  S +GK+ ++D  R S P     + E+ Y
Sbjct: 1    MGMGFRLNLKWDFPISCPTLTNSPSRLCTS--SVQGKEASFDSTRFSFPSVTSEDCESLY 58

Query: 318  NDTISANTCSSTS-RILDIDYLETGHIKTSVGNSLRHDKLTFLTS--------------- 449
             D      CSS + +  + DY     +K  +G     D    + +               
Sbjct: 59   KDPFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAG 118

Query: 450  LQANKISQYRLLLENLVVLEDTFADSDVITLERDILVQLEKLGALKFLRTSFSEIHKYPF 629
            LQA+K SQ+ LLLENL +LE+ FADS+++ LERDI+VQL +LGALK  +   S   K   
Sbjct: 119  LQASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTST 178

Query: 630  S----------------TNPINEGIVKPVVPSTRKIRRKSQRERTSKKANDVRAVGFPAQ 761
            S                   +++ + K VV S +K  RKS+RER  +KA+++ A   P++
Sbjct: 179  SFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSK 238

Query: 762  VINHXXXXXXXXXXXXXXXXXXGRLKITRNEAELSQGVKMIANLERIRMMLEESTGPMVS 941
             I                     RL   +NEAE+S+GVK++ANLERIR  LEE  G + S
Sbjct: 239  TIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVAS 298

Query: 942  FSSWAAAAGVDKKVLLENLQFGWCCRDELLKSSRSLVIYLAKNYNGQGIAFKDLIQAGNV 1121
             S+WA AAGVDKKVL + LQFGW CRDELL+S+ SLV+Y+A+NY G G+AF+D++QAGN+
Sbjct: 299  LSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNL 358

Query: 1122 GVLQGAERFDRSRGYKFSTYVQYWIRKSLLNLLSRHAREIRIPLTLSKAISQIQKARKAL 1301
            GVLQGAERFD ++GY+FSTYVQYWIRKS+  L++RHAR ++IP TL++AI QIQKARKAL
Sbjct: 359  GVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKAL 418

Query: 1302 ANGDGRWPDDCEIAKFTGLSLGKI 1373
                GR+PDD EIAKFTGLSL KI
Sbjct: 419  YKSHGRYPDDNEIAKFTGLSLAKI 442


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  338 bits (868), Expect = 1e-90
 Identities = 190/410 (46%), Positives = 254/410 (61%), Gaps = 36/410 (8%)
 Frame = +3

Query: 252  KGKDINYDMARVSLPM----ESETSYNDTISANTCSSTS-RILDIDYLETGHIKTSVGNS 416
            +GK+ ++D  R S P     + E+ Y D      CSS + +  + DY     +K  +G  
Sbjct: 83   QGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKC 142

Query: 417  LRHDKLTFLTS---------------LQANKISQYRLLLENLVVLEDTFADSDVITLERD 551
               D    + +               LQA+K SQ+ LLLENL +LE+ FADS+++ LERD
Sbjct: 143  SHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERD 202

Query: 552  ILVQLEKLGALKFLRTSFSEIHKYPFS----------------TNPINEGIVKPVVPSTR 683
            I+VQL +LGALK  +   S   K   S                   +++ + K VV S +
Sbjct: 203  IMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGK 262

Query: 684  KIRRKSQRERTSKKANDVRAVGFPAQVINHXXXXXXXXXXXXXXXXXXGRLKITRNEAEL 863
            K  RKS+RER  +KA+++ A   P++ I                     RL   +NEAE+
Sbjct: 263  KEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEM 322

Query: 864  SQGVKMIANLERIRMMLEESTGPMVSFSSWAAAAGVDKKVLLENLQFGWCCRDELLKSSR 1043
            S+GVK++ANLERIR  LEE  G + S S+WA AAGVDKKVL + LQFGW CRDELL+S+ 
Sbjct: 323  SKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTH 382

Query: 1044 SLVIYLAKNYNGQGIAFKDLIQAGNVGVLQGAERFDRSRGYKFSTYVQYWIRKSLLNLLS 1223
            SLV+Y+A+NY G G+AF+D++QAGN+GVLQGAERFD ++GY+FSTYVQYWIRKS+  L++
Sbjct: 383  SLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVA 442

Query: 1224 RHAREIRIPLTLSKAISQIQKARKALANGDGRWPDDCEIAKFTGLSLGKI 1373
            RHAR ++IP TL++AI QIQKARKAL    GR+PDD EIAKFTGLSL KI
Sbjct: 443  RHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKI 492


>ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|222854562|gb|EEE92109.1|
            predicted protein [Populus trichocarpa]
          Length = 559

 Score =  305 bits (781), Expect = 2e-80
 Identities = 188/446 (42%), Positives = 261/446 (58%), Gaps = 38/446 (8%)
 Frame = +3

Query: 150  MGVGFRLNLKWGXXXXXXXXXXXXXXXXXTYASF--KGKDINYDMARVS----LPMESET 311
            MGVGFRL  KWG                  ++SF  +G + + + AR+S    +  E + 
Sbjct: 1    MGVGFRLTPKWGSPMQSHSATNSTSM----FSSFSARGMEASVNQARLSFLSVVSEEGDI 56

Query: 312  SYNDTISANTCSSTSRILDIDYLETGHIK--------TSVGNSLRHDKL-------TFLT 446
                +  +  CSS ++ ++ D L+   +K         S+ N + +DK+       T  T
Sbjct: 57   LNKHSFKSFACSSAAQNVENDCLQMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHT 116

Query: 447  SLQANKISQYRLLLENLVVLEDTFADSDVITLERDILVQLEKLGALKFLRTSFSEI---- 614
             L+    S+   LL+NL  LE   AD D + LERDIL+QL +LGAL+F     S      
Sbjct: 117  RLRERMTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTS 176

Query: 615  HKYPFSTNPIN-------EGIV-----KPVVPSTRKIRRKSQRERT-SKKANDVRAVGFP 755
            +    S  P         +G++     K VV + +K  RK +RER  S       ++  P
Sbjct: 177  NVLDLSAVPTENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLP 236

Query: 756  AQVINHXXXXXXXXXXXXXXXXXXGRLKITRNEAELSQGVKMIANLERIRMMLEESTGPM 935
            ++ + +                   R  I RNEA++++GVK+ ++LERIR  LEE TG +
Sbjct: 237  SKTVQNNLPKPTFVKRTSSSSSR--RSLIARNEAKMTRGVKVASDLERIRTTLEEETGQV 294

Query: 936  VSFSSWAAAAGVDKKVLLENLQFGWCCRDELLKSSRSLVIYLAKNYNGQGIAFKDLIQAG 1115
            VS S WA A G+DKKVL + LQFGW CRDEL+K++ SLV+Y+A+NY G GIA +DLIQAG
Sbjct: 295  VSLSCWAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAG 354

Query: 1116 NVGVLQGAERFDRSRGYKFSTYVQYWIRKSLLNLLSRHAREIRIPLTLSKAISQIQKARK 1295
            N+G+LQGAERFD +RGY+FSTYVQYWIRKS+L ++ RHAR I+IP  LS++I++IQKARK
Sbjct: 355  NLGLLQGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARK 414

Query: 1296 ALANGDGRWPDDCEIAKFTGLSLGKI 1373
            AL+N  GR+PDD E+AKFTGLSL KI
Sbjct: 415  ALSNSHGRYPDDWEVAKFTGLSLAKI 440


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 560

 Score =  302 bits (774), Expect = 1e-79
 Identities = 187/443 (42%), Positives = 257/443 (58%), Gaps = 35/443 (7%)
 Frame = +3

Query: 150  MGVGFRLNLKWGXXXXXXXXXXXXXXXXXTYASFKGKDINYDMARVS----LPMESETSY 317
            MG GFRLNLK                   + +  +G++     +R+S    +  E + ++
Sbjct: 1    MGFGFRLNLKLDFPFHSPNSPSRLSSSPSS-SFVRGREATSYQSRLSFLSVISEEGDIAH 59

Query: 318  NDTISANTCSSTSRILDIDYLETGHIKTSVGN--------------SLRHDKLTFLTSLQ 455
             D +     S   + ++ ++ +    K + G               SL+ D     +S +
Sbjct: 60   RDPLKTYAYSYAVQTVENEHSQGEGFKVNFGKRSHFGLNIIGDAEVSLKEDIFVSPSSTK 119

Query: 456  ANKISQYRLLLENLVVLEDTFADSDVITLERDILVQLEKLGALKFLRTSF---------- 605
              + S++ LLLENL +LE +FADSD   LE DIL+QL KLGALK   T            
Sbjct: 120  -ERTSRFSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVL 178

Query: 606  --SEIHKYPFSTNPIN----EGIVKPVVPSTRKIRRKSQRERTS-KKANDVRAVGFPAQV 764
              S++H        IN       +K VV + +K  RKS+RER S +K +   ++  P++ 
Sbjct: 179  EVSDVHTEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLPLPSRP 238

Query: 765  INHXXXXXXXXXXXXXXXXXXGRLKITRNEAELSQGVKMIANLERIRMMLEESTGPMVSF 944
            I                     RL I RNEAE+++G+K++A+LE+IR  LEE T  +VS 
Sbjct: 239  IQSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSL 298

Query: 945  SSWAAAAGVDKKVLLENLQFGWCCRDELLKSSRSLVIYLAKNYNGQGIAFKDLIQAGNVG 1124
            S WA AAG+D KVL + L FGW CRDEL+KS+RSLV+Y A+NY G GIA +DL+QAGN+G
Sbjct: 299  SCWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLG 358

Query: 1125 VLQGAERFDRSRGYKFSTYVQYWIRKSLLNLLSRHAREIRIPLTLSKAISQIQKARKALA 1304
            VL+GAERFD +RGY+FSTYVQYWIRKS+  ++SR AR I+IP TLS+AI QIQKARKAL 
Sbjct: 359  VLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALT 418

Query: 1305 NGDGRWPDDCEIAKFTGLSLGKI 1373
              +G++PDD EIAK+TGLSL KI
Sbjct: 419  TSNGKYPDDDEIAKYTGLSLAKI 441


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  283 bits (723), Expect = 1e-73
 Identities = 167/400 (41%), Positives = 237/400 (59%), Gaps = 24/400 (6%)
 Frame = +3

Query: 246  SFKGKDINYDMARVSLPM----ESETSYNDTISANTCSSTSRIL---DIDYLETGHIKTS 404
            SF+GK++++  AR+SL      ESET   DT+  +  SS+  +    D   LET   K S
Sbjct: 32   SFRGKELDFGSARLSLLTIGFDESETLRKDTLRPHAGSSSVPLTVENDYSNLETTISKRS 91

Query: 405  VGNSLR-------HDKLTFLTSLQANKISQYRLLLENLVVLEDTFADSDVITLERDILVQ 563
              + +         D   ++ S+Q+   S +  L+ N+ +LE+  +DS+++ LE+DILVQ
Sbjct: 92   CKDLISDTEVLSDRDVSVYVRSVQSCSASHFHTLMANINLLENKVSDSELLKLEKDILVQ 151

Query: 564  LEKLGALKFLRTSFSEIHKYPFSTNPINEG----------IVKPVVPSTRKIRRKSQRER 713
            L +LGAL+      S I         I E           + K +V S RK  RK ++ER
Sbjct: 152  LGRLGALQLFHACLSRIIDMSDLPGLITEDGKANVRKDNELKKKLVFSKRKEERKLRQER 211

Query: 714  TSKKANDVRAVGFPAQVINHXXXXXXXXXXXXXXXXXXGRLKITRNEAELSQGVKMIANL 893
              + +   R        I                     R  I +NEAE+S+G+K++A L
Sbjct: 212  RLQASTSKRCACKSESSIESSIHHVVSTAAKKTKARGR-RAIIAKNEAEMSRGIKVVAQL 270

Query: 894  ERIRMMLEESTGPMVSFSSWAAAAGVDKKVLLENLQFGWCCRDELLKSSRSLVIYLAKNY 1073
            E++++ LE+ TG  VS + WA AAG+D+KVL  +L FGW CRDELLKS RSLV+YL++ Y
Sbjct: 271  EKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCRDELLKSGRSLVLYLSRYY 330

Query: 1074 NGQGIAFKDLIQAGNVGVLQGAERFDRSRGYKFSTYVQYWIRKSLLNLLSRHAREIRIPL 1253
             G G+A +DL+QAGN+G+LQGAERFD +RGY+FSTYVQYWIRK++  L+SRH R I++P 
Sbjct: 331  RGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKVPT 390

Query: 1254 TLSKAISQIQKARKALANGDGRWPDDCEIAKFTGLSLGKI 1373
            TLS  I+++QKARK L    G+ PDD E++K TGLSL KI
Sbjct: 391  TLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKI 430