BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes22_contig00002655
         (3928 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1647   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1617   0.0  
ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|2...  1570   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1561   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1554   0.0  

>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1647 bits (4266), Expect = 0.0
 Identities = 811/1189 (68%), Positives = 979/1189 (82%), Gaps = 10/1189 (0%)
 Frame = -2

Query: 3744 EKLSILMQMDTSCNNNGLMESKLTPDLSEEFLEDFCKKASTSFFEQHGLISHHINSYNDF 3565
            EKLS  +QM+    ++ LM S    DL++E+L+ FCKK + SFF ++GLI H INS+NDF
Sbjct: 18   EKLSNGVQMEI---DDDLMGSIEIDDLNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDF 74

Query: 3564 LKNGIQNVFDSLGEYNVQPGYDPSGN-EAVRRYASVKLGKVTLERPMFWAGENFSTESGT 3388
            +KNGIQ VFDS GE  V+PGYDPS   E   RYASV+ GKVTLERP  WAGE+     G 
Sbjct: 75   IKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVWAGES----DGK 130

Query: 3387 EYLILLPKHARLQNITYSSRMSVQIQYQIYTQEMVKSEILETGKE--HVAKKVLLEDSRD 3214
            E L  LP+HARLQN+TYSSRM  Q+ +Q+YTQ++V+S+  +TGK+  +V KKV+ ED+RD
Sbjct: 131  ESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRD 190

Query: 3213 ITIGRLPVMVKSELCWMSDIKKGDCDFDHGGYFLIKGSEKTFIAQEKICSKRLWLGHDPI 3034
            I IGR+PVMVKSELCWM+ +++GDC++DHGGYFLIKG+EKTFIAQE+IC KRLW+  +P 
Sbjct: 191  ILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPT 250

Query: 3033 WTVKYRSSIGKERVYVKLV---DTHIRGGGKVITVYLFNAVEIPIWMLFFALGVSSDKEV 2863
            W V YR    ++RVYVKL    D + RGG KV+TVY F++ EIPIW+LFFALG SSDKEV
Sbjct: 251  WMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVY-FSSTEIPIWILFFALGASSDKEV 309

Query: 2862 VDLIDADANDNTIVNTLLASIYDADQKSND----FRKEGKAFNNLVEALRKKWSYTPKET 2695
            VDLID + +D  I N L+ASI++AD+++      FR++G A +  V+ L K   + P E+
Sbjct: 310  VDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAIS-FVDKLVKSCKFPPGES 368

Query: 2694 FKDCIEESLFPNLRGFNRKARFLGYMVKCVLEAYTGRRKVDDRDSFRSKXXXXXXXXXXX 2515
             ++CI + LFPN  G  +KARFLGYMVKC+L+AYTGRRK D+RD FR+K           
Sbjct: 369  IQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLER 428

Query: 2514 XXXXXXXHAARRMVKALQRDLWGDRPLHSIEHYLDASVVTNGLSRAFSTGAWVHPYKRME 2335
                   HA RRMVKA+QR+L+GDR L  IE+YLDAS++TNGLSRAFSTG W HP+KRME
Sbjct: 429  ELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRME 488

Query: 2334 RISGVVAHLRRANPLQMMADMRRTRQQVQYTGRVGDARYPHPSHWGKVCFMTTPDGENCG 2155
            RISGVVA LRR NPLQM ADMR+TRQQVQYTG+VGDARYPHPSHWGKVCF++TPDGENCG
Sbjct: 489  RISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCG 548

Query: 2154 LVKNFSSAGLVSTDVRENLLDILMKSGVKELVDNTSTSLGKKHKVFVNGVWVGICDDAAS 1975
            LVKN +  GLVST+V + L+D L   G+++LVD+TST L  K+KVF++G WVG+C+D  S
Sbjct: 549  LVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPIS 608

Query: 1974 LVDDLRSKRRRKEVPDQVEIKRDEKHGEVRIFSDAGRLMRPLLFVENLKKIKFLKGGDYS 1795
             V +LR+KRR KE+P QVEIKRDE+ GEVRIFSDAGR++RPLL VENLKK+K  KG D++
Sbjct: 609  FVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFT 668

Query: 1794 FQNLLDNXXXXXXXXXXXEDCYTAWGVKYLFHDAEESSPLYTHCELDMSFLLSLSCGIIP 1615
            FQ+LLD            EDC TAWG+KYL    ++    YTHCELDMSFLL LSCGIIP
Sbjct: 669  FQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGHDDPPVKYTHCELDMSFLLGLSCGIIP 728

Query: 1614 FANHDHAKRVLFQAQKHSQQAIGYSTTNPNIRVDTITHQLFYPQKPLFRTILSDCLGTPK 1435
            +ANHDHA+RVL+Q++KHSQQAIG+STTNPNIRVDT++HQL+YPQ+PLFRT++SDCLG P 
Sbjct: 729  YANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISDCLGKPG 788

Query: 1434 YSNSHKGMQSRDEYYNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAEV 1255
            YS  HKG+  R EY+NGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH+RSYK+EV
Sbjct: 789  YSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEV 848

Query: 1254 FNKESFGKKGKSEDNIIFGKIQSKIGRVDNLDEDGFPYVGASLRSGDIVIGRHAESGGDH 1075
             N ES  KK KSED++ FGK+QSKIGRVD+LD+DGFP++GA+L++GDIVIGR AESG DH
Sbjct: 849  DNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDH 908

Query: 1074 SVKLKHGERGSVQKVVLSANDDGKNFATVSLRQVRSPSLGDKFSSMHGQKGVLGFLESQE 895
            S+KLKH ERG VQKVV+SANDDGKNFA VSLRQVR+P LGDKFSSMHGQKGVLGFLESQE
Sbjct: 909  SIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQE 968

Query: 894  NFPFTIQGIVPDVVINPHAFPSRQTPGQLLEAALGKGIALGGSLKYATPFSTLSVDAITN 715
            NFPFTIQGIVPD+VINPHAFPSRQTPGQLLEAALGKGIA GG L++ATPFSTLSVDAI +
Sbjct: 969  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFSTLSVDAIAD 1028

Query: 714  QLHRCGFSRWGNERVYNGRTGEMVESLVFMGPTFYQKLVHMSEDKVKFRNIGPVHPLTRQ 535
            QLHR GFSRWG+ERVYNGRTGEM+ SL+FMGPTFYQ+L+HM+EDKVKFRN GPVHPLTRQ
Sbjct: 1029 QLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQ 1088

Query: 534  PVADRKRFGGVKFGEMERDCMIAYGATANLFERLYTLCDASHMHICRKCNNMASVIQRSV 355
            PV+DRKRFGG+KFGEMERDC+IA+GA ANL ERL+TL D+++MHICR+C N+++VIQRSV
Sbjct: 1089 PVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSV 1148

Query: 354  PRGPKIRGPYCRFCESAEDVVKVNVPYGAKLIWQELFSMGIALEFESEL 208
              G K+RGPYCR+CES+E++VKVNVPYGAKL+ QELFSMGI+L+FE++L
Sbjct: 1149 AGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFETQL 1197


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1617 bits (4188), Expect = 0.0
 Identities = 802/1189 (67%), Positives = 969/1189 (81%), Gaps = 10/1189 (0%)
 Frame = -2

Query: 3744 EKLSILMQMDTSCNNNGLMESKLTPDLSEEFLEDFCKKASTSFFEQHGLISHHINSYNDF 3565
            EKLS  +QM+    ++ LM S    DL++E+L+ FCKK + SFF ++GLI H INS+NDF
Sbjct: 54   EKLSNGVQMEI---DDDLMGSIEIDDLNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDF 110

Query: 3564 LKNGIQNVFDSLGEYNVQPGYDPSGN-EAVRRYASVKLGKVTLERPMFWAGENFSTESGT 3388
            +KNGIQ VFDS GE  V+PGYDPS   E   RYASV+ GKVTLERP  WAGE+     G 
Sbjct: 111  IKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVWAGES----DGK 166

Query: 3387 EYLILLPKHARLQNITYSSRMSVQIQYQIYTQEMVKSEILETGKE--HVAKKVLLEDSRD 3214
            E L  LP+HARLQN+TYSSRM  Q+ +Q+YTQ++V+S+  +TGK+  +V KKV+ ED+RD
Sbjct: 167  ESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRD 226

Query: 3213 ITIGRLPVMVKSELCWMSDIKKGDCDFDHGGYFLIKGSEKTFIAQEKICSKRLWLGHDPI 3034
            I IGR+PVMVKSELCWM+ +++GDC++DHGGYFLIKG+EKTFIAQE+IC KRLW+  +P 
Sbjct: 227  ILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPT 286

Query: 3033 WTVKYRSSIGKERVYVKLV---DTHIRGGGKVITVYLFNAVEIPIWMLFFALGVSSDKEV 2863
            W V YR    ++RVYVKL    D + RGG KV+TVY F++ EIPIW+LFFALG SSDKEV
Sbjct: 287  WMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVY-FSSTEIPIWILFFALGASSDKEV 345

Query: 2862 VDLIDADANDNTIVNTLLASIYDADQKSND----FRKEGKAFNNLVEALRKKWSYTPKET 2695
            VDLID + +D  I N L+ASI++AD+++      FR++G A +  V+ L K   + P E+
Sbjct: 346  VDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAIS-FVDKLVKSCKFPPGES 404

Query: 2694 FKDCIEESLFPNLRGFNRKARFLGYMVKCVLEAYTGRRKVDDRDSFRSKXXXXXXXXXXX 2515
             ++CI + LFPN  G  +KARFLGYMVKC+L+AYTGRRK D+RD FR+K           
Sbjct: 405  IQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLER 464

Query: 2514 XXXXXXXHAARRMVKALQRDLWGDRPLHSIEHYLDASVVTNGLSRAFSTGAWVHPYKRME 2335
                   HA RRMVKA+QR+L+GDR L  IE+YLDAS++TNGLSRAFSTG W HP+KRME
Sbjct: 465  ELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRME 524

Query: 2334 RISGVVAHLRRANPLQMMADMRRTRQQVQYTGRVGDARYPHPSHWGKVCFMTTPDGENCG 2155
            RISGVVA LRR NPLQM ADMR+TRQQVQYTG+VGDARYPHPSHWGKVCF++TPDGENCG
Sbjct: 525  RISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCG 584

Query: 2154 LVKNFSSAGLVSTDVRENLLDILMKSGVKELVDNTSTSLGKKHKVFVNGVWVGICDDAAS 1975
            LVKN +  GLVST+V + L+D L   G+++LVD+TST L  K+KVF++G WVG+C+D  S
Sbjct: 585  LVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPIS 644

Query: 1974 LVDDLRSKRRRKEVPDQVEIKRDEKHGEVRIFSDAGRLMRPLLFVENLKKIKFLKGGDYS 1795
             V +LR+KRR KE+P QVEIKRDE+ GEVRIFSDAGR++RPLL VENLKK+K  KG D++
Sbjct: 645  FVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFT 704

Query: 1794 FQNLLDNXXXXXXXXXXXEDCYTAWGVKYLFHDAEESSPLYTHCELDMSFLLSLSCGIIP 1615
            FQ+LLD            EDC TAWG+KYL    ++    YTHCELDMSFLL LSCGIIP
Sbjct: 705  FQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGHDDPPVKYTHCELDMSFLLGLSCGIIP 764

Query: 1614 FANHDHAKRVLFQAQKHSQQAIGYSTTNPNIRVDTITHQLFYPQKPLFRTILSDCLGTPK 1435
            +ANHDHA+RVL+Q++KHSQQAIG+STTNPNIRVDT++HQL+YPQ+PLFRT++SD      
Sbjct: 765  YANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISDL----- 819

Query: 1434 YSNSHKGMQSRDEYYNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAEV 1255
                      R EY+NGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH+RSYK+EV
Sbjct: 820  ---------PRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEV 870

Query: 1254 FNKESFGKKGKSEDNIIFGKIQSKIGRVDNLDEDGFPYVGASLRSGDIVIGRHAESGGDH 1075
             N ES  KK KSED++ FGK+QSKIGRVD+LD+DGFP++GA+L++GDIVIGR AESG DH
Sbjct: 871  DNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDH 930

Query: 1074 SVKLKHGERGSVQKVVLSANDDGKNFATVSLRQVRSPSLGDKFSSMHGQKGVLGFLESQE 895
            S+KLKH ERG VQKVV+SANDDGKNFA VSLRQVR+P LGDKFSSMHGQKGVLGFLESQE
Sbjct: 931  SIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQE 990

Query: 894  NFPFTIQGIVPDVVINPHAFPSRQTPGQLLEAALGKGIALGGSLKYATPFSTLSVDAITN 715
            NFPFTIQGIVPD+VINPHAFPSRQTPGQLLEAALGKGIA GG L++ATPFSTLSVDAI +
Sbjct: 991  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFSTLSVDAIAD 1050

Query: 714  QLHRCGFSRWGNERVYNGRTGEMVESLVFMGPTFYQKLVHMSEDKVKFRNIGPVHPLTRQ 535
            QLHR GFSRWG+ERVYNGRTGEM+ SL+FMGPTFYQ+L+HM+EDKVKFRN GPVHPLTRQ
Sbjct: 1051 QLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQ 1110

Query: 534  PVADRKRFGGVKFGEMERDCMIAYGATANLFERLYTLCDASHMHICRKCNNMASVIQRSV 355
            PV+DRKRFGG+KFGEMERDC+IA+GA ANL ERL+TL D+++MHICR+C N+++VIQRSV
Sbjct: 1111 PVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSV 1170

Query: 354  PRGPKIRGPYCRFCESAEDVVKVNVPYGAKLIWQELFSMGIALEFESEL 208
              G K+RGPYCR+CES+E++VKVNVPYGAKL+ QELFSMGI+L+FE++L
Sbjct: 1171 AGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFETQL 1219


>ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|222865766|gb|EEF02897.1|
            predicted protein [Populus trichocarpa]
          Length = 1160

 Score = 1570 bits (4065), Expect = 0.0
 Identities = 781/1180 (66%), Positives = 940/1180 (79%), Gaps = 7/1180 (0%)
 Frame = -2

Query: 3726 MQMDTSCNNNGLMESKLTPDLSEEFLEDFCKKASTSFFEQHGLISHHINSYNDFLKNGIQ 3547
            M MD    +  LM++    +L +E L+ FCKKA++ FF+++GLISH INSYN F+ +G+Q
Sbjct: 1    MDMDM---DEDLMDTTNLNELGKETLQSFCKKAASLFFDEYGLISHQINSYNSFINSGLQ 57

Query: 3546 NVFDSLGEYNVQPGYDPSGN-EAVRRYASVKLGKVTLERPMFWAGENFSTESGTEYLILL 3370
             VFDS GE  V+PGYD S   +   R ASV+ GKVTL+RP FW G +   E       + 
Sbjct: 58   RVFDSFGEVAVEPGYDSSKQKDGEWRRASVRFGKVTLDRPSFWGGTSSDAEHN-----MF 112

Query: 3369 PKHARLQNITYSSRMSVQIQYQIYTQEMVKSEILETGKEHVAKK-VLLEDSRDITIGRLP 3193
            P+HARLQN+TYS+RM + +  Q+YTQ + +S+  +TG + V +K V+  ++R+I IGR+P
Sbjct: 113  PRHARLQNMTYSARMKIHVNVQVYTQTVGRSDKFKTGIDKVVQKNVVHTENREIIIGRIP 172

Query: 3192 VMVKSELCWMSDIKKGDCDFDHGGYFLIKGSEKTFIAQEKICSKRLWLGHDPIWTVKYRS 3013
            VMVKS+LCW++ ++KGDCDFDHGGYFLIKG+EK FIAQE+IC KRLW+ +   WTV Y+S
Sbjct: 173  VMVKSDLCWLTTVEKGDCDFDHGGYFLIKGAEKVFIAQEQICMKRLWISNSQGWTVSYKS 232

Query: 3012 SIGKERVYVKLVDT----HIRGGGKVITVYLFNAVEIPIWMLFFALGVSSDKEVVDLIDA 2845
             + + R+ V+LV+     +I+G  K + VY F + EIP+W+LFFALGV SDKEV+DLID 
Sbjct: 233  EVKRNRLIVRLVELSKLEYIKGEKKGLCVY-FLSTEIPLWILFFALGVRSDKEVIDLIDY 291

Query: 2844 DANDNTIVNTLLASIYDADQKSNDFRKEGKAFNNLVEALRKKWSYTPKETFKDCIEESLF 2665
             +ND +IVN   ASI+DAD+K   FR+E +A +  V+ L KK  + PKE+ +D I   LF
Sbjct: 292  ASNDASIVNIFFASIHDADEKCEHFRREDRALD-YVDKLLKKTRFPPKESIEDAISAYLF 350

Query: 2664 PNLRGFNRKARFLGYMVKCVLEAYTGRRKVDDRDSFRSKXXXXXXXXXXXXXXXXXXHAA 2485
            P L     KARFLGYMVKC+LEAYTG RK D+RDSFR+K                  HA 
Sbjct: 351  PRLNSRRHKARFLGYMVKCLLEAYTGHRKCDNRDSFRNKRFELASELLERELKVHVSHAL 410

Query: 2484 RRMVKALQRDLWGDRPLHSIEHYLDASVVTNGLSRAFSTGAWVHPYKRMERISGVVAHLR 2305
            RRM KALQRDL+GDR +H IEHYLDAS+VTNGL+RAFSTGAW HP+K MER+SGVV +L 
Sbjct: 411  RRMTKALQRDLYGDRDVHPIEHYLDASIVTNGLTRAFSTGAWCHPFKWMERVSGVVGNLG 470

Query: 2304 RANPLQMMADMRRTRQQVQYTGRVGDARYPHPSHWGKVCFMTTPDGENCGLVKNFSSAGL 2125
            RANPLQ M D+R+TRQQV YTG+VGDARYPHPSHWG+VCF++TPDGENCGLVKN +  G+
Sbjct: 471  RANPLQTMIDLRKTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGV 530

Query: 2124 VSTDVRENLLDILMKSGVKELVDNTSTSLGKKHKVFVNGVWVGICDDAASLVDDLRSKRR 1945
            VST++ E+L+D L  SG+++LVD+T T L  KHKVF+NG WVG+C+D+   V +LRS RR
Sbjct: 531  VSTNISESLVDKLFDSGMEKLVDDTYTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSMRR 590

Query: 1944 RKEVPDQVEIKRDEKHGEVRIFSDAGRLMRPLLFVENLKKIKFLKGGDYSFQNLLDNXXX 1765
            R+E+P QVEIKRDE+  EVRIFSDAGR++RPLL VENL KIK  KGG+Y F +LLD    
Sbjct: 591  RRELPYQVEIKRDEQQREVRIFSDAGRILRPLLVVENLDKIKAFKGGNYIFTSLLDKGII 650

Query: 1764 XXXXXXXXEDCYTAWGVKYLFHDAEESSPL-YTHCELDMSFLLSLSCGIIPFANHDHAKR 1588
                    EDC TAWG+K+L  D E   P+ Y+HCELDMSFLL LSCGIIPFANHDHA+R
Sbjct: 651  EFIGTEEEEDCCTAWGIKFLLADIEGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARR 710

Query: 1587 VLFQAQKHSQQAIGYSTTNPNIRVDTITHQLFYPQKPLFRTILSDCLGTPKYSNSHKGMQ 1408
            VL+QAQKHSQQAIG+STTNPNIRVDT++HQL YPQ+PLFRT++SDCL  PK         
Sbjct: 711  VLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLHYPQRPLFRTMISDCLVLPK--------- 761

Query: 1407 SRDEYYNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAEVFNKESFGKK 1228
               E +NGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH+RSYKAEV NKE   K+
Sbjct: 762  --PELFNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKELTDKR 819

Query: 1227 GKSEDNIIFGKIQSKIGRVDNLDEDGFPYVGASLRSGDIVIGRHAESGGDHSVKLKHGER 1048
             KSED+I FGKIQSKIGRVD+LD+DGFP++GA+++SGDIVIG+ AESG DHSVKLKH ER
Sbjct: 820  RKSEDSITFGKIQSKIGRVDSLDDDGFPFIGANMQSGDIVIGKCAESGADHSVKLKHTER 879

Query: 1047 GSVQKVVLSANDDGKNFATVSLRQVRSPSLGDKFSSMHGQKGVLGFLESQENFPFTIQGI 868
            G VQKVVLS+ND+GKNFA VSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFTIQG+
Sbjct: 880  GMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGV 939

Query: 867  VPDVVINPHAFPSRQTPGQLLEAALGKGIALGGSLKYATPFSTLSVDAITNQLHRCGFSR 688
            VPD+VINPHAFPSRQTPGQLLEAALGKGIA GGS +YATPFSTLSVD I +QLHR  FSR
Sbjct: 940  VPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDDIIDQLHRAKFSR 999

Query: 687  WGNERVYNGRTGEMVESLVFMGPTFYQKLVHMSEDKVKFRNIGPVHPLTRQPVADRKRFG 508
            WGNERVYNGRTGEMV SL+FMGPTFYQ+LVHM+EDKVKFRN GPVHPLTRQPVADRKRFG
Sbjct: 1000 WGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKRFG 1059

Query: 507  GVKFGEMERDCMIAYGATANLFERLYTLCDASHMHICRKCNNMASVIQRSVPRGPKIRGP 328
            G+KFGEMERDC+IA+GA+ANL ERL+TL D+S MHIC+KC N+A+VIQR VP G KIRGP
Sbjct: 1060 GIKFGEMERDCLIAHGASANLHERLFTLSDSSEMHICQKCKNVANVIQRGVPGGRKIRGP 1119

Query: 327  YCRFCESAEDVVKVNVPYGAKLIWQELFSMGIALEFESEL 208
            YCR CES +D+VKV+VPYGAKL+ QELFSMGI+L+F++ +
Sbjct: 1120 YCRVCESVDDLVKVSVPYGAKLLCQELFSMGISLKFDTRV 1159


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1561 bits (4041), Expect = 0.0
 Identities = 777/1189 (65%), Positives = 937/1189 (78%), Gaps = 10/1189 (0%)
 Frame = -2

Query: 3744 EKLSILMQMDTSCNNNGLMESKLTPDLSEEFLEDFCKKASTSFFEQHGLISHHINSYNDF 3565
            E LS  M +DT  +++   E     DL E FL+DFCKK+S +FF Q+GLISH INSYNDF
Sbjct: 17   EDLSPGMDLDTDDDDDYYSEPVNIHDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDF 76

Query: 3564 LKNGIQNVFDSLGEYNVQPGYDPSGN-EAVRRYASVKLGKVTLERPMFWAGENFSTESGT 3388
            +KNGIQ  FD  G+  VQPGYDPS   +   RYA+VK GKVTL++P FW G      SG 
Sbjct: 77   IKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYATVKFGKVTLDKPKFWGG----AASGK 132

Query: 3387 EYLILLPKHARLQNITYSSRMSVQIQYQIYTQEMVKSEILETGKEHVAKKVLLE---DSR 3217
            EY  +LP+HARLQN+TYSSRM + I  +IYTQ++V S+  +TGK+    K  +E   D+R
Sbjct: 133  EYN-MLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNR 191

Query: 3216 DITIGRLPVMVKSELCWMSDIKKGDCDFDHGGYFLIKGSEKTFIAQEKICSKRLWLGHDP 3037
            D+ IGRLPVMV S+LCWM D +K DC+FD GGYFLIKG+EK FIAQE+IC +RLW+ +  
Sbjct: 192  DVFIGRLPVMVNSDLCWMKDGQKRDCEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQ 251

Query: 3036 IWTVKYRSSIGKERVYVKLVDTH----IRGGGKVITVYLFNAVEIPIWMLFFALGVSSDK 2869
             WTV YRS + + R+ ++LV+      ++   KV+ VY F + E+P+W+LFFALGVSSDK
Sbjct: 252  GWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVY-FLSTEVPVWILFFALGVSSDK 310

Query: 2868 EVVDLIDADANDNTIVNTLLASI--YDADQKSNDFRKEGKAFNNLVEALRKKWSYTPKET 2695
            E+VDLID   +D T++N L AS+   D D K  DFR+  +A   L   +RK  S+ P + 
Sbjct: 311  EIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRKT-SFPPADK 369

Query: 2694 FKDCIEESLFPNLRGFNRKARFLGYMVKCVLEAYTGRRKVDDRDSFRSKXXXXXXXXXXX 2515
             +DC+   LF +L+G  +K  FLGYMVKC+L+AYTGRRK D+RD FR+K           
Sbjct: 370  IEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLER 429

Query: 2514 XXXXXXXHAARRMVKALQRDLWGDRPLHSIEHYLDASVVTNGLSRAFSTGAWVHPYKRME 2335
                   HA RRM KALQRDL+GDR +H IEHYLDAS++TNGLSRAFSTGAW H +KRME
Sbjct: 430  ELKVHIAHARRRMEKALQRDLYGDRQVHPIEHYLDASIITNGLSRAFSTGAWAHAFKRME 489

Query: 2334 RISGVVAHLRRANPLQMMADMRRTRQQVQYTGRVGDARYPHPSHWGKVCFMTTPDGENCG 2155
            RISGVVA L RANPLQ MA++RRTRQQV YTG+VGDARYPHPSHWG+VCF++TPDGENCG
Sbjct: 490  RISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCG 549

Query: 2154 LVKNFSSAGLVSTDVRENLLDILMKSGVKELVDNTSTSLGKKHKVFVNGVWVGICDDAAS 1975
            L+KN S  GLVS + ++++   L + G++ LVDNTSTS   K+++F++G WVG+C+D+ S
Sbjct: 550  LIKNLSGTGLVSLNTKKSITPTLFRCGMENLVDNTSTSFCGKYRIFLDGEWVGVCEDSLS 609

Query: 1974 LVDDLRSKRRRKEVPDQVEIKRDEKHGEVRIFSDAGRLMRPLLFVENLKKIKFLKGGDYS 1795
             V ++R KRRR     QVE+KRDE+  EVRIFSDAGR++RPLL VENL +I   KG +Y+
Sbjct: 610  FVTNVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYT 669

Query: 1794 FQNLLDNXXXXXXXXXXXEDCYTAWGVKYLFHDAEESSPLYTHCELDMSFLLSLSCGIIP 1615
            FQ+LLD            EDC  AW +K+L  D  E +  Y+HCELDMSFLL LSCG++P
Sbjct: 670  FQSLLDKGIIELIGTEEEEDCRVAWSIKHLMED--EGTTKYSHCELDMSFLLGLSCGLVP 727

Query: 1614 FANHDHAKRVLFQAQKHSQQAIGYSTTNPNIRVDTITHQLFYPQKPLFRTILSDCLGTPK 1435
            FANHDHA+R LFQ+QKHS QAIG+S TN N RVDT++HQL YPQ+PLFRT+ +DCLGTP 
Sbjct: 728  FANHDHARRALFQSQKHSNQAIGFSPTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPG 787

Query: 1434 YSNSHKGMQSRDEYYNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAEV 1255
            Y +SH G+  + E+YNGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH+RSYKAEV
Sbjct: 788  YLSSHAGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 847

Query: 1254 FNKESFGKKGKSEDNIIFGKIQSKIGRVDNLDEDGFPYVGASLRSGDIVIGRHAESGGDH 1075
             NKES  K+ KS+D I FGK QSKIGRVD+LD+DGFPY+GA+L+SGDIVIGR AESG DH
Sbjct: 848  DNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADH 907

Query: 1074 SVKLKHGERGSVQKVVLSANDDGKNFATVSLRQVRSPSLGDKFSSMHGQKGVLGFLESQE 895
            S+KLKH E+G VQKVVLS+NDDGKN+A VSLRQVRSP LGDKFSSMHGQKGVLGFLESQE
Sbjct: 908  SIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 967

Query: 894  NFPFTIQGIVPDVVINPHAFPSRQTPGQLLEAALGKGIALGGSLKYATPFSTLSVDAITN 715
            NFPFTIQGIVPD+VINPHAFPSRQTPGQLLEAALGKGIA GGSLKYATPFST SVDAIT+
Sbjct: 968  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITD 1027

Query: 714  QLHRCGFSRWGNERVYNGRTGEMVESLVFMGPTFYQKLVHMSEDKVKFRNIGPVHPLTRQ 535
            QLHR GFSRWG+ERVYNGRTGEM+ SL+FMGPTFYQ+L+HM+EDKVKFRN GPVHPLTRQ
Sbjct: 1028 QLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQ 1087

Query: 534  PVADRKRFGGVKFGEMERDCMIAYGATANLFERLYTLCDASHMHICRKCNNMASVIQRSV 355
            PVADRKRFGG+KFGEMERDC+IA+GA+ANL ERL+TL D+S MH+C+KC N+ASVIQRSV
Sbjct: 1088 PVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSV 1147

Query: 354  PRGPKIRGPYCRFCESAEDVVKVNVPYGAKLIWQELFSMGIALEFESEL 208
              G K+RGPYCR CES +D+V+VNVPYGAKL+ QELFSMGI L+FE++L
Sbjct: 1148 AGGRKMRGPYCRVCESFDDIVRVNVPYGAKLLCQELFSMGINLKFETQL 1196


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1554 bits (4023), Expect = 0.0
 Identities = 774/1184 (65%), Positives = 936/1184 (79%), Gaps = 7/1184 (0%)
 Frame = -2

Query: 3738 LSILMQMDTSCNNNGLMESKLTPDLSEEFLEDFCKKASTSFFEQHGLISHHINSYNDFLK 3559
            + I    D+  + + +  S    D+ E  L+DFC KA+T FF ++GLISH INSYNDF+ 
Sbjct: 30   MDIDFDSDSGSDCDFMDSSTSLTDIGEAKLKDFCNKAATLFFNEYGLISHQINSYNDFIN 89

Query: 3558 NGIQNVFDSLGEYNVQPGYDPSGN-EAVRRYASVKLGKVTLERPMFWAGENFSTESGTEY 3382
            NGIQ  FDS GE  V+PGYDPS   E   RYASVK GKV LE+P FW        SG + 
Sbjct: 90   NGIQKAFDSFGELVVEPGYDPSKKGENEWRYASVKFGKVALEKPTFW--------SGADE 141

Query: 3381 LILLPKHARLQNITYSSRMSVQIQYQIYTQEMVKSEILETGKE-HVAKKVLLEDSRDITI 3205
              +LP+HARLQN+TYSS+M V +  ++YT+++V+S+  +TGK+ +V K+VL  D+R+ITI
Sbjct: 142  HKMLPRHARLQNMTYSSKMKVNVSVEVYTRKVVRSDKFKTGKDQYVDKEVLNTDNRNITI 201

Query: 3204 GRLPVMVKSELCWMSDIKKGDCDFDHGGYFLIKGSEKTFIAQEKICSKRLWLGHDPIWTV 3025
            G LPVMVKS+LCWM   +KGDCDFDHGGYFLIKG+EK FIAQE+IC KRLW+ +   WTV
Sbjct: 202  GSLPVMVKSDLCWMKTAEKGDCDFDHGGYFLIKGAEKVFIAQEQICLKRLWISNIQGWTV 261

Query: 3024 KYRSSIGKERVYVKLVDTH----IRGGGKVITVYLFNAVEIPIWMLFFALGVSSDKEVVD 2857
             Y+S I + R+ V+LV       ++   K +TVY F + EIP+W+LFFALGV+SDKEV+D
Sbjct: 262  SYKSEIKRNRLIVRLVGLSALEDVKAEKKCLTVY-FLSTEIPLWILFFALGVTSDKEVID 320

Query: 2856 LIDADANDNTIVNTLLASIYDADQKSNDFRKEGKAFNNLVEALRKKWSYTPKETFKDCIE 2677
            LI   +ND  IVN   ASI+DAD+K+  FR+  +A   +V  +R    + P E  +D   
Sbjct: 321  LIGYGSNDARIVNIFFASIHDADEKTEGFRRGKEALEYVVRQIRGT-RFPPGEN-EDFFL 378

Query: 2676 ESLFPNLRGFNRKARFLGYMVKCVLEAYTGRRKVDDRDSFRSKXXXXXXXXXXXXXXXXX 2497
              LFP L    +KARFLGYMVKC+L+AY G+RK ++ DSFR+K                 
Sbjct: 379  LYLFPTLHSLRQKARFLGYMVKCLLQAYNGQRKCNNWDSFRNKRFELAKELLERELKVHI 438

Query: 2496 XHAARRMVKALQRDLWGDRPLHSIEHYLDASVVTNGLSRAFSTGAWVHPYKRMERISGVV 2317
             HA RRM KALQ+DL+GDR +  IEHYLDAS+VTNGLSRAFSTGAW HPYKRMERISGVV
Sbjct: 439  AHARRRMAKALQKDLYGDRDVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVV 498

Query: 2316 AHLRRANPLQMMADMRRTRQQVQYTGRVGDARYPHPSHWGKVCFMTTPDGENCGLVKNFS 2137
            A+L RANPLQ M D+R+TR  VQYTG+VGDAR+PHPSHWG+VCF++TPDGENCGLVKN +
Sbjct: 499  ANLGRANPLQTMVDLRKTRYHVQYTGKVGDARFPHPSHWGRVCFLSTPDGENCGLVKNLA 558

Query: 2136 SAGLVSTDVRENLLDILMKSGVKELVDNTSTSLGKKHKVFVNGVWVGICDDAASLVDDLR 1957
            + GLVS ++ E L+D L+  G++++ +++ + L +K KVF+NG WVG+C+D+   V +LR
Sbjct: 559  TTGLVSVNILEPLIDKLIARGMEKVPEDSHSDLDEKDKVFLNGEWVGVCEDSRLFVAELR 618

Query: 1956 SKRRRKEVPDQVEIKRDEKHGEVRIFSDAGRLMRPLLFVENLKKIKFLKGGDYSFQNLLD 1777
              RRRK++P QVEIKRDE+  EVRIFSDAGR++RPLL V+NL KI+  KGG+ +FQ+LLD
Sbjct: 619  RLRRRKKLPQQVEIKRDEQQQEVRIFSDAGRILRPLLVVQNLHKIEAFKGGNCTFQSLLD 678

Query: 1776 NXXXXXXXXXXXEDCYTAWGVKYLFHDAEESSPL-YTHCELDMSFLLSLSCGIIPFANHD 1600
                        EDC TAWG+K+L    +    L YTHCELDMSFLL LSCGIIPFANHD
Sbjct: 679  KGIIEFVGTEEEEDCSTAWGIKFLLSGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHD 738

Query: 1599 HAKRVLFQAQKHSQQAIGYSTTNPNIRVDTITHQLFYPQKPLFRTILSDCLGTPKYSNSH 1420
            HA+RVL+QAQKHSQQAIG+ TTNPNIRVDT++HQL+YPQ+PLFRT+ SDCLG P  +  H
Sbjct: 739  HARRVLYQAQKHSQQAIGFPTTNPNIRVDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGH 798

Query: 1419 KGMQSRDEYYNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAEVFNKES 1240
             G+  + E YNGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH+RSYKA+V NKE 
Sbjct: 799  NGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKEL 858

Query: 1239 FGKKGKSEDNIIFGKIQSKIGRVDNLDEDGFPYVGASLRSGDIVIGRHAESGGDHSVKLK 1060
              K+ K +DN+ FGKI SKIGRVD+LD+DGFP++GA+L+SGDIVIGR AESG DHS+KLK
Sbjct: 859  LDKRRKYDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESGPDHSIKLK 918

Query: 1059 HGERGSVQKVVLSANDDGKNFATVSLRQVRSPSLGDKFSSMHGQKGVLGFLESQENFPFT 880
            H ERG VQKVVLS+ND+GKNFA VSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFT
Sbjct: 919  HTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT 978

Query: 879  IQGIVPDVVINPHAFPSRQTPGQLLEAALGKGIALGGSLKYATPFSTLSVDAITNQLHRC 700
             QGIVPD+VINPH+FPSRQTPGQLLEAALGKGIA GGS+KYATPFSTLSV+AITNQLHR 
Sbjct: 979  RQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTLSVEAITNQLHRA 1038

Query: 699  GFSRWGNERVYNGRTGEMVESLVFMGPTFYQKLVHMSEDKVKFRNIGPVHPLTRQPVADR 520
            GFSRWGNERVYNGRTGEMV SL+FMGPTFYQ+L+HM+EDKVKFRN GPVHPLTRQPVADR
Sbjct: 1039 GFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADR 1098

Query: 519  KRFGGVKFGEMERDCMIAYGATANLFERLYTLCDASHMHICRKCNNMASVIQRSVPRGPK 340
            KRFGG+KFGEMERDC+IA+GA+ANL ERL+TL D+S MHIC+KC N+A+VIQR+VP G K
Sbjct: 1099 KRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQKCKNVANVIQRAVPGGRK 1158

Query: 339  IRGPYCRFCESAEDVVKVNVPYGAKLIWQELFSMGIALEFESEL 208
            IRGPYCR CES +++VKVNVPYGAKL+ QELFSMGI+L+FE+ L
Sbjct: 1159 IRGPYCRVCESVDEIVKVNVPYGAKLLCQELFSMGISLKFETRL 1202