BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00054347
         (351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        163   2e-38
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   159   2e-37
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   156   1e-36
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   156   1e-36
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   156   1e-36

>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  163 bits (412), Expect = 2e-38
 Identities = 79/116 (68%), Positives = 95/116 (81%)
 Frame = +3

Query: 3    RIVSCKWIYKRKESILGAEPTRFMARLVARGFTQEGGLDYNDVFSPVVKHVSIRILLALV 182
            R+++CKWI+KR E I   EP ++ ARLVARGFTQ  G+D+N++FSPVVKH SIRILLA+V
Sbjct: 856  RLINCKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMV 915

Query: 183  VERNLELEKMDVKTAFLYGELDETILMAQLEGFSVKGKEDYVCRSNKSLYGLKQSP 350
               +LELE+MDVKTAFL+G L+E ILMAQ EGF  K KEDYVC  +KSLYGLKQSP
Sbjct: 916  ALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLHKSLYGLKQSP 971


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  159 bits (402), Expect = 2e-37
 Identities = 72/116 (62%), Positives = 96/116 (82%)
 Frame = +3

Query: 3    RIVSCKWIYKRKESILGAEPTRFMARLVARGFTQEGGLDYNDVFSPVVKHVSIRILLALV 182
            +I++CKW++K+KE I  AE  ++ AR+VARGF Q  G+DYN++FSPVV+H SIR+LLA+V
Sbjct: 833  KIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIV 892

Query: 183  VERNLELEKMDVKTAFLYGELDETILMAQLEGFSVKGKEDYVCRSNKSLYGLKQSP 350
              +NLELE++DVKTAFL+GEL+E I M Q +GF V GKE++VC+  KSLYGLKQSP
Sbjct: 893  AHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSP 948


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  156 bits (395), Expect = 1e-36
 Identities = 74/116 (63%), Positives = 93/116 (80%)
 Frame = +3

Query: 3    RIVSCKWIYKRKESILGAEPTRFMARLVARGFTQEGGLDYNDVFSPVVKHVSIRILLALV 182
            + +SCKWI+KRKE +  +EP ++ ARLVARG++Q  G+DYNDVFSPVVKH SIR  L++V
Sbjct: 859  KTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIV 918

Query: 183  VERNLELEKMDVKTAFLYGELDETILMAQLEGFSVKGKEDYVCRSNKSLYGLKQSP 350
               +LELE++DVKTAFL+GEL+E I M Q EGF V GKE YVC+  +SLYGLKQSP
Sbjct: 919  ASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSP 974


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  156 bits (395), Expect = 1e-36
 Identities = 74/116 (63%), Positives = 93/116 (80%)
 Frame = +3

Query: 3    RIVSCKWIYKRKESILGAEPTRFMARLVARGFTQEGGLDYNDVFSPVVKHVSIRILLALV 182
            + +SCKWI+KRKE +  +EP ++ ARLVARG++Q  G+DYNDVFSPVVKH SIR  L++V
Sbjct: 859  KTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIV 918

Query: 183  VERNLELEKMDVKTAFLYGELDETILMAQLEGFSVKGKEDYVCRSNKSLYGLKQSP 350
               +LELE++DVKTAFL+GEL+E I M Q EGF V GKE YVC+  +SLYGLKQSP
Sbjct: 919  ASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSP 974


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  156 bits (395), Expect = 1e-36
 Identities = 74/116 (63%), Positives = 93/116 (80%)
 Frame = +3

Query: 3    RIVSCKWIYKRKESILGAEPTRFMARLVARGFTQEGGLDYNDVFSPVVKHVSIRILLALV 182
            + +SCKWI+KRKE +  +EP ++ ARLVARG++Q  G+DYNDVFSPVVKH SIR  L++V
Sbjct: 859  KTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIV 918

Query: 183  VERNLELEKMDVKTAFLYGELDETILMAQLEGFSVKGKEDYVCRSNKSLYGLKQSP 350
               +LELE++DVKTAFL+GEL+E I M Q EGF V GKE YVC+  +SLYGLKQSP
Sbjct: 919  ASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSP 974