BLASTX nr result

ID: Atractylodes21_contig00049476 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00049476
         (299 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris ...    63   1e-11
gb|ACY01928.1| hypothetical protein [Beta vulgaris]                    48   3e-09
gb|AEV42261.1| hypothetical protein [Beta vulgaris]                    49   4e-09

>gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]
          Length = 1631

 Score = 63.2 bits (152), Expect(2) = 1e-11
 Identities = 34/57 (59%), Positives = 40/57 (70%)
 Frame = -2

Query: 295  ATRPYEKLAPRFYGPFIVLQLATSGQGGIQITASTPRIHLVFHVSQLKLAVGNQPVL 125
            A RP+EKLAPRFYGPF VLQ   +    +Q+  S+ +IH VFHVS LK  VGN PVL
Sbjct: 1470 AKRPFEKLAPRFYGPFTVLQRIGATAYKLQLPPSS-KIHPVFHVSLLKKVVGNTPVL 1525



 Score = 30.8 bits (68), Expect(2) = 1e-11
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -1

Query: 119  LPPQLTVDLEMEGQLEKLLGVRFNTQIARSPKEVLIQWR 3
            +PP + VD+E+  + E+LL VR   Q  ++  E LI+W+
Sbjct: 1528 IPPHIDVDMELVVEPEELLDVRQIRQGKQTFTECLIKWK 1566


>gb|ACY01928.1| hypothetical protein [Beta vulgaris]
          Length = 1583

 Score = 47.8 bits (112), Expect(2) = 3e-09
 Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
 Frame = -2

Query: 295  ATRPYEKLAPRFYGPFIVLQLATSGQGGIQITAST-PRIHLVFHVSQLKLAVGN 137
            A +  EKLAPRFYGPF VL+    GQ   Q+      ++H VFH+SQLK AVG+
Sbjct: 1403 AKKRNEKLAPRFYGPFSVLK--RIGQVAYQLQLPLGAKLHPVFHISQLKKAVGS 1454



 Score = 38.1 bits (87), Expect(2) = 3e-09
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = -1

Query: 143  GKPTCSLLLPPQLTVDLEMEGQLEKLLGVRFNTQIARSPKEVLIQW 6
            G    S  +PPQLT DL ++ Q E LL +R + Q      EVLI+W
Sbjct: 1453 GSLQSSPTIPPQLTNDLVLDAQPESLLNIRSHPQKPAEVTEVLIKW 1498


>gb|AEV42261.1| hypothetical protein [Beta vulgaris]
          Length = 1396

 Score = 48.5 bits (114), Expect(2) = 4e-09
 Identities = 27/56 (48%), Positives = 36/56 (64%)
 Frame = -2

Query: 295  ATRPYEKLAPRFYGPFIVLQLATSGQGGIQITASTPRIHLVFHVSQLKLAVGNQPV 128
            A R  EKLAPR+YGPF VL+   +    + +   + +IH VFH+SQL+ AVG  PV
Sbjct: 1239 AKRLNEKLAPRYYGPFPVLKRIGTVAYELDLPPHS-KIHPVFHISQLRKAVGTAPV 1293



 Score = 37.0 bits (84), Expect(2) = 4e-09
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 122  LLPPQLTVDLEMEGQLEKLLGVRFNTQIARSPKEVLIQW 6
            +LPP LT DL +     ++LG+R N     +P E+L+QW
Sbjct: 1296 VLPPLLTTDLVLPSSPSQVLGIRPNPLNQAAPAEILVQW 1334


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