BLASTX nr result

ID: Atractylodes21_contig00046077 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00046077
         (278 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|2...   176   1e-42
ref|XP_002526000.1| cleavage and polyadenylation specificity fac...   172   2e-41
ref|XP_004166505.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and...   171   6e-41
ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation spec...   171   6e-41
gb|AAS80153.1| ACT11D09.9 [Cucumis melo]                              171   6e-41

>ref|XP_002314781.1| predicted protein [Populus trichocarpa] gi|222863821|gb|EEF00952.1|
           predicted protein [Populus trichocarpa]
          Length = 639

 Score =  176 bits (447), Expect = 1e-42
 Identities = 81/92 (88%), Positives = 88/92 (95%)
 Frame = +3

Query: 3   TMQANLYYKVLINWTSQKVKNTYATRNAFDFKNVHSFDRSLLDAPGPCVLFATPGMISGG 182
           T+QANLYYK+LI+WTSQKVK TYATRNAFDFK+VH+FDRSL++APGPCVLFATPGMISGG
Sbjct: 271 TIQANLYYKILISWTSQKVKETYATRNAFDFKHVHNFDRSLINAPGPCVLFATPGMISGG 330

Query: 183 FSLEVFKHWAPSEANLITLPGYCVAGTVGHKL 278
           FSLEVFK WAP E NLITLPGYCVAGTVGHKL
Sbjct: 331 FSLEVFKQWAPCEMNLITLPGYCVAGTVGHKL 362


>ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
           communis] gi|223534732|gb|EEF36424.1| cleavage and
           polyadenylation specificity factor, putative [Ricinus
           communis]
          Length = 963

 Score =  172 bits (437), Expect = 2e-41
 Identities = 77/92 (83%), Positives = 86/92 (93%)
 Frame = +3

Query: 3   TMQANLYYKVLINWTSQKVKNTYATRNAFDFKNVHSFDRSLLDAPGPCVLFATPGMISGG 182
           T+QAN+YYK+LI WTSQK+K TY +RNAFDFKNV++FDRSLLDAPGPCVLFATPGMISGG
Sbjct: 271 TIQANMYYKMLIGWTSQKIKETYTSRNAFDFKNVYTFDRSLLDAPGPCVLFATPGMISGG 330

Query: 183 FSLEVFKHWAPSEANLITLPGYCVAGTVGHKL 278
           FSLEVFK WAP E NL+TLPGYCVAGT+GHKL
Sbjct: 331 FSLEVFKRWAPCEMNLVTLPGYCVAGTIGHKL 362


>ref|XP_004166505.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
           specificity factor subunit 3-II-like, partial [Cucumis
           sativus]
          Length = 472

 Score =  171 bits (433), Expect = 6e-41
 Identities = 78/92 (84%), Positives = 85/92 (92%)
 Frame = +3

Query: 3   TMQANLYYKVLINWTSQKVKNTYATRNAFDFKNVHSFDRSLLDAPGPCVLFATPGMISGG 182
           T+QAN+YYK+LI+WTSQKVK TY TRNAFDFKNV  FDRS++DAPGPCVLFATPGMIS G
Sbjct: 115 TVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMISSG 174

Query: 183 FSLEVFKHWAPSEANLITLPGYCVAGTVGHKL 278
           FSLEVFK WAPS+ NLITLPGYCVAGTVGHKL
Sbjct: 175 FSLEVFKRWAPSKLNLITLPGYCVAGTVGHKL 206


>ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           3-II-like [Cucumis sativus]
          Length = 649

 Score =  171 bits (433), Expect = 6e-41
 Identities = 78/92 (84%), Positives = 85/92 (92%)
 Frame = +3

Query: 3   TMQANLYYKVLINWTSQKVKNTYATRNAFDFKNVHSFDRSLLDAPGPCVLFATPGMISGG 182
           T+QAN+YYK+LI+WTSQKVK TY TRNAFDFKNV  FDRS++DAPGPCVLFATPGMIS G
Sbjct: 271 TVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMISSG 330

Query: 183 FSLEVFKHWAPSEANLITLPGYCVAGTVGHKL 278
           FSLEVFK WAPS+ NLITLPGYCVAGTVGHKL
Sbjct: 331 FSLEVFKRWAPSKLNLITLPGYCVAGTVGHKL 362


>gb|AAS80153.1| ACT11D09.9 [Cucumis melo]
          Length = 708

 Score =  171 bits (433), Expect = 6e-41
 Identities = 78/92 (84%), Positives = 85/92 (92%)
 Frame = +3

Query: 3   TMQANLYYKVLINWTSQKVKNTYATRNAFDFKNVHSFDRSLLDAPGPCVLFATPGMISGG 182
           T+QAN+YYK+LI+WTSQKVK TY TRNAFDFKNV  FDRS++DAPGPCVLFATPGMIS G
Sbjct: 304 TVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMISSG 363

Query: 183 FSLEVFKHWAPSEANLITLPGYCVAGTVGHKL 278
           FSLEVFK WAPS+ NLITLPGYCVAGTVGHKL
Sbjct: 364 FSLEVFKRWAPSKLNLITLPGYCVAGTVGHKL 395