BLASTX nr result
ID: Atractylodes21_contig00042791
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes21_contig00042791
(547 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 77 1e-27
dbj|BAD99221.1| polypepetide with reverse transcriptase and RNas... 75 3e-27
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha... 75 9e-26
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 75 3e-25
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th... 74 3e-25
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 77.4 bits (189), Expect(3) = 1e-27
Identities = 36/67 (53%), Positives = 48/67 (71%)
Frame = -1
Query: 202 KRSVSRYFVRLGGSPISWKSKKQVTVSLSSTEAEFQSMRHVTSELTWLNRLLADMGVEDI 23
+RS+S Y V LGGSPISWK+KKQ TVS SS EAE+++M + E+ WL +LL ++G+E
Sbjct: 1358 RRSISAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKEIKWLRKLLKELGIEQS 1417
Query: 22 THITLKC 2
T L C
Sbjct: 1418 TPARLYC 1424
Score = 68.9 bits (167), Expect(3) = 1e-27
Identities = 36/87 (41%), Positives = 51/87 (58%)
Frame = -3
Query: 497 SPLPSNXXXXXXXXXXXXXPSKYR*LVGKLNFLVHTRPDIAYSVQFLSQFNQHPSSAHWD 318
+PL N P YR LVG+L +L+HTRP+++YSV L+QF Q+P AH+D
Sbjct: 1257 TPLEQNHHLASDDGPLLSDPKPYRRLVGRLLYLLHTRPELSYSVHVLAQFMQNPREAHFD 1316
Query: 317 AAVHVLKYLRVFSSYGLLFNNTIDFKL 237
AA+ V++YL+ G+L N D L
Sbjct: 1317 AALRVVRYLKGSPGQGILLNADPDLTL 1343
Score = 22.3 bits (46), Expect(3) = 1e-27
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -2
Query: 231 DSNWASCPYSR 199
DS+W SCP +R
Sbjct: 1348 DSDWQSCPLTR 1358
>dbj|BAD99221.1| polypepetide with reverse transcriptase and RNaseH domains [Petunia
x hybrida]
Length = 389
Score = 74.7 bits (182), Expect(3) = 3e-27
Identities = 32/67 (47%), Positives = 50/67 (74%)
Frame = -1
Query: 202 KRSVSRYFVRLGGSPISWKSKKQVTVSLSSTEAEFQSMRHVTSELTWLNRLLADMGVEDI 23
+RS+S +F+ +GG P+SWKSKKQ VSLSS EAE++S+R + +E+ W+ RLL D+ V+
Sbjct: 243 RRSISGFFLTMGGCPLSWKSKKQQVVSLSSAEAEYRSLRRLVAEIAWIVRLLHDLSVDFS 302
Query: 22 THITLKC 2
+++ C
Sbjct: 303 LPVSVHC 309
Score = 68.9 bits (167), Expect(3) = 3e-27
Identities = 33/65 (50%), Positives = 44/65 (67%)
Frame = -3
Query: 431 YR*LVGKLNFLVHTRPDIAYSVQFLSQFNQHPSSAHWDAAVHVLKYLRVFSSYGLLFNNT 252
YR LVGKLN+L HTRPDI+++VQ LSQ Q P S H +AA H L+Y+R G+ ++
Sbjct: 164 YRRLVGKLNYLTHTRPDISFAVQTLSQHMQSPRSGHLEAAYHTLRYIRNNPGLGIFLSSE 223
Query: 251 IDFKL 237
F+L
Sbjct: 224 QSFQL 228
Score = 23.5 bits (49), Expect(3) = 3e-27
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 231 DSNWASCPYSR 199
D++WASCP SR
Sbjct: 233 DADWASCPDSR 243
>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
Length = 1468
Score = 74.7 bits (182), Expect(2) = 9e-26
Identities = 34/60 (56%), Positives = 47/60 (78%)
Frame = -1
Query: 202 KRSVSRYFVRLGGSPISWKSKKQVTVSLSSTEAEFQSMRHVTSELTWLNRLLADMGVEDI 23
+RS++ YFV+LG +PISWK+KKQ TVS SS EAE+++M +T EL WL R+L D+GV +
Sbjct: 1325 RRSLTGYFVQLGDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHV 1384
Score = 67.4 bits (163), Expect(2) = 9e-26
Identities = 33/81 (40%), Positives = 49/81 (60%)
Frame = -3
Query: 494 PLPSNXXXXXXXXXXXXXPSKYR*LVGKLNFLVHTRPDIAYSVQFLSQFNQHPSSAHWDA 315
PL N S+YR LVG+L +LV TRP+++YSV L+QF Q+P HW+A
Sbjct: 1225 PLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLVVTRPELSYSVHTLAQFMQNPRQDHWNA 1284
Query: 314 AVHVLKYLRVFSSYGLLFNNT 252
A+ V++YL+ G+L ++T
Sbjct: 1285 AIRVVRYLKSNPGQGILLSST 1305
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 74.7 bits (182), Expect(2) = 3e-25
Identities = 34/60 (56%), Positives = 47/60 (78%)
Frame = -1
Query: 202 KRSVSRYFVRLGGSPISWKSKKQVTVSLSSTEAEFQSMRHVTSELTWLNRLLADMGVEDI 23
+RS++ YFV+LG +PISWK+KKQ TVS SS EAE+++M +T EL WL R+L D+GV +
Sbjct: 966 RRSLTGYFVQLGDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHV 1025
Score = 65.9 bits (159), Expect(2) = 3e-25
Identities = 32/81 (39%), Positives = 48/81 (59%)
Frame = -3
Query: 494 PLPSNXXXXXXXXXXXXXPSKYR*LVGKLNFLVHTRPDIAYSVQFLSQFNQHPSSAHWDA 315
PL N S+YR LVG+L +L TRP+++YSV L+QF Q+P HW+A
Sbjct: 866 PLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQDHWNA 925
Query: 314 AVHVLKYLRVFSSYGLLFNNT 252
A+ V++YL+ G+L ++T
Sbjct: 926 AIRVVRYLKSNPGQGILLSST 946
>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|7269049|emb|CAB79159.1| LTR retrotransposon like
protein [Arabidopsis thaliana]
Length = 1109
Score = 74.3 bits (181), Expect(2) = 3e-25
Identities = 33/60 (55%), Positives = 47/60 (78%)
Frame = -1
Query: 202 KRSVSRYFVRLGGSPISWKSKKQVTVSLSSTEAEFQSMRHVTSELTWLNRLLADMGVEDI 23
+RS++ YFV+LG +PISWK+KKQ T+S SS EAE+++M +T EL WL R+L D+GV +
Sbjct: 966 RRSLTGYFVQLGDTPISWKTKKQPTISRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHV 1025
Score = 65.9 bits (159), Expect(2) = 3e-25
Identities = 32/81 (39%), Positives = 48/81 (59%)
Frame = -3
Query: 494 PLPSNXXXXXXXXXXXXXPSKYR*LVGKLNFLVHTRPDIAYSVQFLSQFNQHPSSAHWDA 315
PL N S+YR LVG+L +L TRP+++YSV L+QF Q+P HW+A
Sbjct: 866 PLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTRPELSYSVHTLAQFMQNPRQDHWNA 925
Query: 314 AVHVLKYLRVFSSYGLLFNNT 252
A+ V++YL+ G+L ++T
Sbjct: 926 AIRVVRYLKSNPGQGILLSST 946