BLASTX nr result
ID: Atractylodes21_contig00040032
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes21_contig00040032
(557 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic ... 242 3e-62
ref|XP_002529065.1| DNA polymerase epsilon, catalytic subunit, p... 205 4e-51
ref|XP_002328167.1| predicted protein [Populus trichocarpa] gi|2... 187 1e-45
emb|CBI17056.3| unnamed protein product [Vitis vinifera] 185 5e-45
ref|XP_003606227.1| DNA polymerase epsilon catalytic subunit A [... 178 6e-43
>ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis
vinifera]
Length = 2214
Score = 242 bits (617), Expect = 3e-62
Identities = 118/189 (62%), Positives = 143/189 (75%), Gaps = 5/189 (2%)
Frame = -2
Query: 553 SNGKSSSVGPRPIVRSYETNHKTSNHGA-----SSKENANHDQNGNPLLASLQQIDNHTE 389
+ G++SS GPRPIVR YE N K + S +E ANH ++ L +Q D T+
Sbjct: 1191 NKGRTSSAGPRPIVRCYEVNGKQQSDAMNCLANSPQEPANHSESA---LTPMQPTDISTD 1247
Query: 388 DIDRHVDYKGWLDSRKRKWKQVREKRKRQRLDNLDKFNQRNGVAEIHSSVASKRQAQGRT 209
+IDR+VDY+GWL+ +KRKWK REKRKRQR+DN NQ NGV+E+ V + +QAQGRT
Sbjct: 1248 NIDRNVDYQGWLEMKKRKWKDAREKRKRQRMDNSKTSNQTNGVSELPGGVINHKQAQGRT 1307
Query: 208 GVNSYFERHELALTHSHWQIIQLVPSLQHGQFFAWIVVEGIMRKIPISVPRVFYLNSKAP 29
GVNSYF RHELALTHS+WQIIQL PS QHGQFFAW++VEG+M KIPI+VPRVFYLNSKA
Sbjct: 1308 GVNSYFRRHELALTHSYWQIIQLAPSSQHGQFFAWVIVEGVMLKIPITVPRVFYLNSKAL 1367
Query: 28 VTEEFPGRR 2
+TEEFPGRR
Sbjct: 1368 ITEEFPGRR 1376
>ref|XP_002529065.1| DNA polymerase epsilon, catalytic subunit, putative [Ricinus
communis] gi|223531477|gb|EEF33309.1| DNA polymerase
epsilon, catalytic subunit, putative [Ricinus communis]
Length = 2227
Score = 205 bits (521), Expect = 4e-51
Identities = 103/188 (54%), Positives = 131/188 (69%), Gaps = 5/188 (2%)
Frame = -2
Query: 550 NGKSSSVGPRPIVRSYETNHKTSNHGASSKENANHDQNGN-----PLLASLQQIDNHTED 386
N S+ GPRPIV Y TN + + A+ + +++H Q N L + +QQ + E
Sbjct: 1193 NKSISTNGPRPIVHCYATNSEEHSVKATGRMDSSHQQTDNGESVHELSSLVQQTASSGES 1252
Query: 385 IDRHVDYKGWLDSRKRKWKQVREKRKRQRLDNLDKFNQRNGVAEIHSSVASKRQAQGRTG 206
IDR+VDY+GWL+ +KRKWK E+RKRQRL NL + NG E SSV ++++AQ RTG
Sbjct: 1253 IDRNVDYQGWLELKKRKWKDTLERRKRQRLGNLRNSSHANGDFEPLSSVINRKKAQSRTG 1312
Query: 205 VNSYFERHELALTHSHWQIIQLVPSLQHGQFFAWIVVEGIMRKIPISVPRVFYLNSKAPV 26
V SYF HE+ALT HWQIIQL P G+FFAW+VVEGIM K+PI+VPRVFYLNSKAP+
Sbjct: 1313 VGSYFTTHEIALTRCHWQIIQLFPGSHCGEFFAWVVVEGIMLKVPITVPRVFYLNSKAPI 1372
Query: 25 TEEFPGRR 2
TE+FPGRR
Sbjct: 1373 TEKFPGRR 1380
>ref|XP_002328167.1| predicted protein [Populus trichocarpa] gi|222837682|gb|EEE76047.1|
predicted protein [Populus trichocarpa]
Length = 2221
Score = 187 bits (474), Expect = 1e-45
Identities = 94/183 (51%), Positives = 125/183 (68%), Gaps = 2/183 (1%)
Frame = -2
Query: 544 KSSSVG-PRPIVRSYETNHKTSNHGASSKENANHDQNGNPLLASLQQID-NHTEDIDRHV 371
KSSS+ PRPIVR Y+ N K S +A + L+S Q + ++ E+IDR+V
Sbjct: 1191 KSSSINRPRPIVRCYDVNEKRSAKKTGQLNSAEQQTDSVHELSSQPQHNTSYAENIDRNV 1250
Query: 370 DYKGWLDSRKRKWKQVREKRKRQRLDNLDKFNQRNGVAEIHSSVASKRQAQGRTGVNSYF 191
DY+GWL+ +KRKWK + ++RK+QRL+N + +E+ + + + AQ RTGV SYF
Sbjct: 1251 DYQGWLELKKRKWKDILDRRKKQRLNNTRTSHHITDASELLGGLTNHKGAQRRTGVGSYF 1310
Query: 190 ERHELALTHSHWQIIQLVPSLQHGQFFAWIVVEGIMRKIPISVPRVFYLNSKAPVTEEFP 11
HE+ALT HWQIIQL+PS + GQFFAW+VVEGIM KIPI++PR FYLN+KAP E FP
Sbjct: 1311 TTHEVALTRCHWQIIQLLPSSRCGQFFAWVVVEGIMLKIPITIPRAFYLNAKAPAMENFP 1370
Query: 10 GRR 2
GRR
Sbjct: 1371 GRR 1373
>emb|CBI17056.3| unnamed protein product [Vitis vinifera]
Length = 2723
Score = 185 bits (469), Expect = 5e-45
Identities = 100/182 (54%), Positives = 120/182 (65%)
Frame = -2
Query: 547 GKSSSVGPRPIVRSYETNHKTSNHGASSKENANHDQNGNPLLASLQQIDNHTEDIDRHVD 368
G +SS GPRPIV+ ANH ++ L +Q D T++IDR+VD
Sbjct: 1631 GSTSSAGPRPIVQP-----------------ANHSESA---LTPMQPTDISTDNIDRNVD 1670
Query: 367 YKGWLDSRKRKWKQVREKRKRQRLDNLDKFNQRNGVAEIHSSVASKRQAQGRTGVNSYFE 188
Y+GWL+ +KRKWK REKRKRQRL LD + ++ TGVNSYF
Sbjct: 1671 YQGWLEMKKRKWKDAREKRKRQRL--LDDHIFLTFLVPAFLALG--------TGVNSYFR 1720
Query: 187 RHELALTHSHWQIIQLVPSLQHGQFFAWIVVEGIMRKIPISVPRVFYLNSKAPVTEEFPG 8
RHELALTHS+WQIIQL PS QHGQFFAW++VEG+M KIPI+VPRVFYLNSKA +TEEFPG
Sbjct: 1721 RHELALTHSYWQIIQLAPSSQHGQFFAWVIVEGVMLKIPITVPRVFYLNSKALITEEFPG 1780
Query: 7 RR 2
RR
Sbjct: 1781 RR 1782
>ref|XP_003606227.1| DNA polymerase epsilon catalytic subunit A [Medicago truncatula]
gi|355507282|gb|AES88424.1| DNA polymerase epsilon
catalytic subunit A [Medicago truncatula]
Length = 2248
Score = 178 bits (451), Expect = 6e-43
Identities = 99/194 (51%), Positives = 126/194 (64%), Gaps = 9/194 (4%)
Frame = -2
Query: 556 GSNGKSSSVGPRPIVRSYETNHKTSNHGASSKENANHDQNGNPLLASL--QQIDNHTEDI 383
G+ G+SS++GPRPI+R YE N N S K N D + +S QQ + E++
Sbjct: 1204 GNKGRSSTLGPRPIIRHYEAN----NEQHSEKFNGQEDSEQQHIDSSNIDQQNETSCENV 1259
Query: 382 DRHVDYKGWLDSRKRKWKQVREKRKRQR-------LDNLDKFNQRNGVAEIHSSVASKRQ 224
DR VDY+GWL +KRKWK + KRK+QR L+N K + NG E +S +
Sbjct: 1260 DRTVDYQGWLQLKKRKWKSMLGKRKKQRMSFDFLRLENSKKSDHLNGSLEQTNS----KM 1315
Query: 223 AQGRTGVNSYFERHELALTHSHWQIIQLVPSLQHGQFFAWIVVEGIMRKIPISVPRVFYL 44
GR+ V+SYF RHE+ LT HWQIIQLV S Q GQFFAW+VV+GIM KIPIS+PRVFYL
Sbjct: 1316 NHGRSNVSSYFRRHEVVLTRGHWQIIQLVHSPQVGQFFAWVVVDGIMLKIPISIPRVFYL 1375
Query: 43 NSKAPVTEEFPGRR 2
NS++P TEEF G+R
Sbjct: 1376 NSRSP-TEEFSGKR 1388