BLASTX nr result

ID: Atractylodes21_contig00038321 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00038321
         (434 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13160.1| putative non-LTR retroelement [Phaseolus vulgaris]      61   1e-07

>gb|AER13160.1| putative non-LTR retroelement [Phaseolus vulgaris]
          Length = 216

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/114 (25%), Positives = 49/114 (42%)
 Frame = +3

Query: 9   ETVEHLFHSCSTVHEVWDWFFNWCNISIGGHNSLEQLVFIVMEKGRNTTQKLFLEAAVGC 188
           E+ +HLF  C    +VW     W  I    HN L+           ++ Q L L+     
Sbjct: 75  ESCQHLFIECLYAKQVWSLCLKWLGILFVQHNDLKDHFVSFHIAQASSKQNLVLKGVWAA 134

Query: 189 LFRCVWKARNDLVFNQRNFSAARVIEDLQGSLFIWLKYRGKCNSLLWSQWRCNP 350
           + RC+W  RN ++F Q       + +  Q   ++W+K+R   ++  +  W  NP
Sbjct: 135 IVRCIWDQRNTILFKQGVVDVEEIFQMAQLKSWLWMKHRAYFHTYSFVDWLLNP 188


Top