BLASTX nr result

ID: Atractylodes21_contig00028875 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00028875
         (340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA46766.1| pre-mRNA splicing factor-like protein [Solanum tu...    98   8e-19
ref|XP_004171554.1| PREDICTED: pre-mRNA-splicing factor SF2-like...    94   9e-18
ref|XP_004145959.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-spl...    94   9e-18
ref|XP_003602366.1| RNA-binding protein [Medicago truncatula] gi...    93   3e-17
ref|XP_003602365.1| RNA-binding protein [Medicago truncatula] gi...    93   3e-17

>gb|ABA46766.1| pre-mRNA splicing factor-like protein [Solanum tuberosum]
          Length = 269

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 44/47 (93%), Positives = 45/47 (95%)
 Frame = -3

Query: 338 SRDSEGTFGLVDYTNYEDMKYAIRKLDDTEFRNPWTKTYIRVRRYDG 198
           SRDSEGTFGLVDYTNYEDMKYAIRKLDDTEFRNPWT+TYIRVR Y G
Sbjct: 149 SRDSEGTFGLVDYTNYEDMKYAIRKLDDTEFRNPWTRTYIRVREYKG 195


>ref|XP_004171554.1| PREDICTED: pre-mRNA-splicing factor SF2-like, partial [Cucumis
           sativus]
          Length = 158

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 40/47 (85%), Positives = 45/47 (95%)
 Frame = -3

Query: 338 SRDSEGTFGLVDYTNYEDMKYAIRKLDDTEFRNPWTKTYIRVRRYDG 198
           SRDSEGTFG+VDYTNY+DMKYAIRKLDDTEFRNPW + YIRV++YDG
Sbjct: 30  SRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDG 76


>ref|XP_004145959.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor SF2-like
           [Cucumis sativus]
          Length = 248

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 40/47 (85%), Positives = 45/47 (95%)
 Frame = -3

Query: 338 SRDSEGTFGLVDYTNYEDMKYAIRKLDDTEFRNPWTKTYIRVRRYDG 198
           SRDSEGTFG+VDYTNY+DMKYAIRKLDDTEFRNPW + YIRV++YDG
Sbjct: 138 SRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDG 184


>ref|XP_003602366.1| RNA-binding protein [Medicago truncatula]
           gi|355491414|gb|AES72617.1| RNA-binding protein
           [Medicago truncatula]
          Length = 273

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 40/46 (86%), Positives = 45/46 (97%)
 Frame = -3

Query: 338 SRDSEGTFGLVDYTNYEDMKYAIRKLDDTEFRNPWTKTYIRVRRYD 201
           SRDSEGTFGLVDYTNY+DMKYAIRKLDDTEFRNPW ++YIRVR+Y+
Sbjct: 155 SRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFRNPWARSYIRVRKYE 200


>ref|XP_003602365.1| RNA-binding protein [Medicago truncatula]
           gi|355491413|gb|AES72616.1| RNA-binding protein
           [Medicago truncatula]
          Length = 272

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 40/46 (86%), Positives = 45/46 (97%)
 Frame = -3

Query: 338 SRDSEGTFGLVDYTNYEDMKYAIRKLDDTEFRNPWTKTYIRVRRYD 201
           SRDSEGTFGLVDYTNY+DMKYAIRKLDDTEFRNPW ++YIRVR+Y+
Sbjct: 155 SRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFRNPWARSYIRVRKYE 200


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