BLASTX nr result

ID: Atractylodes21_contig00026975 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00026975
         (301 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519316.1| Squamosa promoter-binding protein, putative ...    73   3e-11
ref|XP_002274934.1| PREDICTED: squamosa promoter-binding-like pr...    72   5e-11
ref|XP_003547557.1| PREDICTED: squamosa promoter-binding-like pr...    71   8e-11
emb|CAN74605.1| hypothetical protein VITISV_025316 [Vitis vinifera]    70   2e-10
gb|AFX82677.1| squamosa promoter binding protein 5 [Vitis pseudo...    69   5e-10

>ref|XP_002519316.1| Squamosa promoter-binding protein, putative [Ricinus communis]
           gi|223541631|gb|EEF43180.1| Squamosa promoter-binding
           protein, putative [Ricinus communis]
          Length = 1026

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 44/114 (38%), Positives = 60/114 (52%), Gaps = 16/114 (14%)
 Frame = -1

Query: 295 IPSDCMSRQL----------------GVXXXXXXXSVEIDKGKRELEKRRRVMDVDQQEV 164
           +PSDC ++QL                          ++ +KGKRELEKRRRV+ V+ +++
Sbjct: 50  VPSDCRNKQLFPVGAEIPQNGGLFNTSASGSDNNNDLDNEKGKRELEKRRRVVVVEDEDL 109

Query: 163 CAEAXXXXXXXXXXGQVYPVTEDEDGESGKKSKVAGATSNRAVCQVDDCRTDLS 2
            A+            Q YP+  DED + GKK+K  G  SNRAVCQV+DC  DLS
Sbjct: 110 PADEAGSLILKLGG-QAYPIV-DEDAKCGKKTKFIGNASNRAVCQVEDCSADLS 161


>ref|XP_002274934.1| PREDICTED: squamosa promoter-binding-like protein 1-like [Vitis
           vinifera]
          Length = 1029

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 49/110 (44%), Positives = 61/110 (55%), Gaps = 13/110 (11%)
 Frame = -1

Query: 295 IPSDCMSRQ------------LGVXXXXXXXSVEID-KGKRELEKRRRVMDVDQQEVCAE 155
           +PSDC S+Q            L +        +  D KGKRELEK+RRV+ V + E C E
Sbjct: 50  VPSDCGSKQFFPPASEPVTVGLSISSSSSDEIIVDDGKGKRELEKKRRVV-VLEDEACDE 108

Query: 154 AXXXXXXXXXXGQVYPVTEDEDGESGKKSKVAGATSNRAVCQVDDCRTDL 5
                       QVYP+ E E  +SGKK+K+ GAT NRAVCQV+DCR DL
Sbjct: 109 LGSLNLKLGA--QVYPIMEGEV-KSGKKTKLIGATPNRAVCQVEDCRADL 155


>ref|XP_003547557.1| PREDICTED: squamosa promoter-binding-like protein 12-like [Glycine
           max]
          Length = 1032

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 46/111 (41%), Positives = 61/111 (54%), Gaps = 13/111 (11%)
 Frame = -1

Query: 295 IPSDCMSRQL-------------GVXXXXXXXSVEIDKGKRELEKRRRVMDVDQQEVCAE 155
           +PSDC SR+L                       V + +GKRELEKRRR + +D+  V   
Sbjct: 50  VPSDCRSRELFPADPEILVTGDASNNLSSAYDDVNLGEGKRELEKRRRGV-IDEGGVEMN 108

Query: 154 AXXXXXXXXXXGQVYPVTEDEDGESGKKSKVAGATSNRAVCQVDDCRTDLS 2
                      GQVYP+ E E+ +SGKK+K+  +TS+RAVCQV+DCR DLS
Sbjct: 109 DGAGSLNLNLGGQVYPIMEGEE-KSGKKTKLTASTSSRAVCQVEDCRADLS 158


>emb|CAN74605.1| hypothetical protein VITISV_025316 [Vitis vinifera]
          Length = 967

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 13/110 (11%)
 Frame = -1

Query: 295 IPSDCMSRQ------------LGVXXXXXXXSVEID-KGKRELEKRRRVMDVDQQEVCAE 155
           +PSDC S+Q            L +        +  D KGKRELEK+RRV+ V +   C E
Sbjct: 41  VPSDCGSKQFFPPASEPVTVGLSISSSSSDEIIVDDGKGKRELEKKRRVV-VJEDXACDE 99

Query: 154 AXXXXXXXXXXGQVYPVTEDEDGESGKKSKVAGATSNRAVCQVDDCRTDL 5
                       QVYP+ E E  +SGKK+K+ GAT NRAVCQV+DCR DL
Sbjct: 100 LGSLNLKLGA--QVYPIMEGEV-KSGKKTKLIGATPNRAVCQVEDCRADL 146


>gb|AFX82677.1| squamosa promoter binding protein 5 [Vitis pseudoreticulata]
          Length = 1029

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 13/110 (11%)
 Frame = -1

Query: 295 IPSDCMSRQ------------LGVXXXXXXXSVEID-KGKRELEKRRRVMDVDQQEVCAE 155
           +PSDC S+Q            L +        +  D KGKRELEK+RRV+ V + E C E
Sbjct: 50  VPSDCGSKQFFPPASEPVTVGLSISSSSSDEIIVDDGKGKRELEKKRRVV-VIEDEACDE 108

Query: 154 AXXXXXXXXXXGQVYPVTEDEDGESGKKSKVAGATSNRAVCQVDDCRTDL 5
                       QVY + E E  +SGKK+K+ GAT NRAVCQV+DCR DL
Sbjct: 109 LGSLNLKLGA--QVYLIMEGEV-KSGKKTKLIGATPNRAVCQVEDCRADL 155


Top