BLASTX nr result

ID: Atractylodes21_contig00026931 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00026931
         (597 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002300392.1| predicted protein [Populus trichocarpa] gi|2...   281   6e-74
emb|CBI39777.3| unnamed protein product [Vitis vinifera]              279   2e-73
ref|XP_002271592.1| PREDICTED: heterogeneous nuclear ribonucleop...   279   2e-73
ref|XP_002522793.1| Heterogeneous nuclear ribonucleoprotein A1, ...   277   1e-72
ref|XP_004149406.1| PREDICTED: nuclear polyadenylated RNA-bindin...   273   1e-71

>ref|XP_002300392.1| predicted protein [Populus trichocarpa] gi|222847650|gb|EEE85197.1|
           predicted protein [Populus trichocarpa]
          Length = 182

 Score =  281 bits (719), Expect = 6e-74
 Identities = 139/157 (88%), Positives = 145/157 (92%), Gaps = 1/157 (0%)
 Frame = -3

Query: 469 KIFIGGLPKDTQYNAFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 290
           KIFIGGL KDT Y  FNKHFGKYG+ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED
Sbjct: 20  KIFIGGLAKDTTYATFNKHFGKYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79

Query: 289 THVFNGKQ-VEIKRTIPKGSALSKDFKTKKIFVGGIPTSLGEDEVGSFFSKHGKVVEHQI 113
           THV NGKQ VEIKRTIPKGS  SKDFKTKKIFVGGIP+S+ EDE  +FFSKHGKVVEHQI
Sbjct: 80  THVINGKQQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVTEDEFQNFFSKHGKVVEHQI 139

Query: 112 IRDHETNRSRGFGFVIFDSEEVVDELLSNGNMIDMNG 2
           IRDHETNRSRGFGF+IFDSEEVVDE+LSNGNMIDM G
Sbjct: 140 IRDHETNRSRGFGFIIFDSEEVVDEMLSNGNMIDMAG 176


>emb|CBI39777.3| unnamed protein product [Vitis vinifera]
          Length = 293

 Score =  279 bits (714), Expect = 2e-73
 Identities = 134/156 (85%), Positives = 144/156 (92%)
 Frame = -3

Query: 469 KIFIGGLPKDTQYNAFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 290
           KIFIGGL KDT Y  FNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVD+VIED
Sbjct: 20  KIFIGGLAKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDRVIED 79

Query: 289 THVFNGKQVEIKRTIPKGSALSKDFKTKKIFVGGIPTSLGEDEVGSFFSKHGKVVEHQII 110
           THV NGKQVEIKRTIPKGS  SKDFKTKKIFVGG+P+++ EDE  +FFSK+GKVVEHQII
Sbjct: 80  THVINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGVPSTVTEDEFKNFFSKYGKVVEHQII 139

Query: 109 RDHETNRSRGFGFVIFDSEEVVDELLSNGNMIDMNG 2
           RDHETNRSRGFGF+IFDSEEVVDE++S GNMIDM G
Sbjct: 140 RDHETNRSRGFGFIIFDSEEVVDEMISKGNMIDMAG 175


>ref|XP_002271592.1| PREDICTED: heterogeneous nuclear ribonucleoprotein 27C [Vitis
           vinifera] gi|147768836|emb|CAN78130.1| hypothetical
           protein VITISV_036088 [Vitis vinifera]
          Length = 348

 Score =  279 bits (714), Expect = 2e-73
 Identities = 134/156 (85%), Positives = 144/156 (92%)
 Frame = -3

Query: 469 KIFIGGLPKDTQYNAFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 290
           KIFIGGL KDT Y  FNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVD+VIED
Sbjct: 20  KIFIGGLAKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDRVIED 79

Query: 289 THVFNGKQVEIKRTIPKGSALSKDFKTKKIFVGGIPTSLGEDEVGSFFSKHGKVVEHQII 110
           THV NGKQVEIKRTIPKGS  SKDFKTKKIFVGG+P+++ EDE  +FFSK+GKVVEHQII
Sbjct: 80  THVINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGVPSTVTEDEFKNFFSKYGKVVEHQII 139

Query: 109 RDHETNRSRGFGFVIFDSEEVVDELLSNGNMIDMNG 2
           RDHETNRSRGFGF+IFDSEEVVDE++S GNMIDM G
Sbjct: 140 RDHETNRSRGFGFIIFDSEEVVDEMISKGNMIDMAG 175


>ref|XP_002522793.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
           communis] gi|223538031|gb|EEF39644.1| Heterogeneous
           nuclear ribonucleoprotein A1, putative [Ricinus
           communis]
          Length = 348

 Score =  277 bits (708), Expect = 1e-72
 Identities = 134/156 (85%), Positives = 143/156 (91%)
 Frame = -3

Query: 469 KIFIGGLPKDTQYNAFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 290
           KIFIGGL KDT Y  FNKHFG+YG+ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED
Sbjct: 20  KIFIGGLAKDTTYATFNKHFGRYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79

Query: 289 THVFNGKQVEIKRTIPKGSALSKDFKTKKIFVGGIPTSLGEDEVGSFFSKHGKVVEHQII 110
           THV +GKQVEIKRTIPKGS  SKDFKTKKIFVGGIP+S+ EDE   FFSK+G+VVEHQII
Sbjct: 80  THVIHGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVTEDEFKGFFSKYGQVVEHQII 139

Query: 109 RDHETNRSRGFGFVIFDSEEVVDELLSNGNMIDMNG 2
           RDHETNRSRGFGF+IFDSEE VDE+LSNGNMIDM G
Sbjct: 140 RDHETNRSRGFGFIIFDSEETVDEMLSNGNMIDMAG 175


>ref|XP_004149406.1| PREDICTED: nuclear polyadenylated RNA-binding protein 4-like
           [Cucumis sativus] gi|449496860|ref|XP_004160246.1|
           PREDICTED: nuclear polyadenylated RNA-binding protein
           4-like [Cucumis sativus]
          Length = 347

 Score =  273 bits (699), Expect = 1e-71
 Identities = 130/156 (83%), Positives = 141/156 (90%)
 Frame = -3

Query: 469 KIFIGGLPKDTQYNAFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 290
           KIFIGGL KDT Y  FNKHFG YG+ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED
Sbjct: 20  KIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79

Query: 289 THVFNGKQVEIKRTIPKGSALSKDFKTKKIFVGGIPTSLGEDEVGSFFSKHGKVVEHQII 110
           THV NGKQVEIKRTIPKG   SKDFKTKKIFVGGIP+++ EDE   FFSK+GK+VEHQII
Sbjct: 80  THVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTEDEFKHFFSKYGKIVEHQII 139

Query: 109 RDHETNRSRGFGFVIFDSEEVVDELLSNGNMIDMNG 2
           RDHETNRSRGFGF++F+ EEVVDE+LS GNMIDM+G
Sbjct: 140 RDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSG 175



 Score = 68.6 bits (166), Expect = 8e-10
 Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
 Frame = -3

Query: 469 KIFIGGLPKDTQYNAFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 290
           KIF+GG+P     + F   F KYG I +  I++D  T + RGFGFI + +  VVD+++  
Sbjct: 108 KIFVGGIPSTVTEDEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSK 167

Query: 289 THV--FNGKQVEIKRTIPKGSA 230
            ++   +G QVEIK+  PK S+
Sbjct: 168 GNMIDMSGTQVEIKKAEPKKSS 189


Top