BLASTX nr result
ID: Atractylodes21_contig00024756
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes21_contig00024756
(571 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC27151.1| Similar to gb|U46691 putative chromatin structure... 62 7e-08
ref|NP_176723.3| transcription elongation factor SPT6 [Arabidops... 62 7e-08
emb|CBH16214.1| HNRNPA [Trypanosoma brucei gambiense DAL972] 60 2e-07
ref|XP_823301.1| hypothetical protein [Trypanosoma brucei brucei... 59 7e-07
emb|CCC94134.1| putative RNA-binding protein, partial [Trypanoso... 58 1e-06
>gb|AAC27151.1| Similar to gb|U46691 putative chromatin structure regulator (SUPT6H)
from Homo sapiens. ESTs gb|T42908, gb|AA586170 and
gb|AA395125 come from this gene [Arabidopsis thaliana]
Length = 1684
Score = 62.0 bits (149), Expect = 7e-08
Identities = 36/97 (37%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Frame = -2
Query: 564 GTGGWGXXXXXXXXXXXXXXXXXSGWSSGNQTGGWGSSGAGNKDDAQGSEWGSRDGGKKT 385
G GGWG + G TGGWGS GNK D GS WGS GG +
Sbjct: 1564 GGGGWGSESAGKK-------------TGGGSTGGWGSESGGNKSDGAGS-WGSGSGGGGS 1609
Query: 384 ELPGSGWG---GGGDENASGGWGSSKAAQGSGWGDQT 283
GWG GG + GG+GS GS WG+++
Sbjct: 1610 ----GGWGNDSGGKKSSEDGGFGSGSGGGGSDWGNES 1642
Score = 57.4 bits (137), Expect = 2e-06
Identities = 37/106 (34%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Frame = -2
Query: 561 TGGWGXXXXXXXXXXXXXXXXXSGWSSGNQTGGWGSSGAGNKDDAQG----------SEW 412
TGGWG SG G +GGWG+ G K G S+W
Sbjct: 1582 TGGWGSESGGNKSDGAGSWGSGSG---GGGSGGWGNDSGGKKSSEDGGFGSGSGGGGSDW 1638
Query: 411 GSRDGGKKTELPGSGWG---GGGDENASGGWG---SSKAAQGSGWG 292
G+ GGKK+ G GWG GG + GGWG SS+ + G G G
Sbjct: 1639 GNESGGKKSSADG-GWGSESGGKKSDGEGGWGNEPSSRKSDGGGGG 1683
>ref|NP_176723.3| transcription elongation factor SPT6 [Arabidopsis thaliana]
gi|332196252|gb|AEE34373.1| transcription elongation
factor SPT6 [Arabidopsis thaliana]
Length = 1647
Score = 62.0 bits (149), Expect = 7e-08
Identities = 36/97 (37%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Frame = -2
Query: 564 GTGGWGXXXXXXXXXXXXXXXXXSGWSSGNQTGGWGSSGAGNKDDAQGSEWGSRDGGKKT 385
G GGWG + G TGGWGS GNK D GS WGS GG +
Sbjct: 1527 GGGGWGSESAGKK-------------TGGGSTGGWGSESGGNKSDGAGS-WGSGSGGGGS 1572
Query: 384 ELPGSGWG---GGGDENASGGWGSSKAAQGSGWGDQT 283
GWG GG + GG+GS GS WG+++
Sbjct: 1573 ----GGWGNDSGGKKSSEDGGFGSGSGGGGSDWGNES 1605
Score = 57.4 bits (137), Expect = 2e-06
Identities = 37/106 (34%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Frame = -2
Query: 561 TGGWGXXXXXXXXXXXXXXXXXSGWSSGNQTGGWGSSGAGNKDDAQG----------SEW 412
TGGWG SG G +GGWG+ G K G S+W
Sbjct: 1545 TGGWGSESGGNKSDGAGSWGSGSG---GGGSGGWGNDSGGKKSSEDGGFGSGSGGGGSDW 1601
Query: 411 GSRDGGKKTELPGSGWG---GGGDENASGGWG---SSKAAQGSGWG 292
G+ GGKK+ G GWG GG + GGWG SS+ + G G G
Sbjct: 1602 GNESGGKKSSADG-GWGSESGGKKSDGEGGWGNEPSSRKSDGGGGG 1646
>emb|CBH16214.1| HNRNPA [Trypanosoma brucei gambiense DAL972]
Length = 340
Score = 60.5 bits (145), Expect = 2e-07
Identities = 35/72 (48%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = -2
Query: 492 GWSSGNQTGGWGS-SGAGNKDDAQGS----EWGSRDGGKKTELPGSGWGGGGDENASGGW 328
GW G+ GGWGS G GN GS WGS GG G GWG GG A GGW
Sbjct: 18 GWGGGSSGGGWGSDDGPGNGSGGGGSGGRGGWGSGGGG------GGGWGSGG--GAGGGW 69
Query: 327 GSSKAAQGSGWG 292
GS A G GWG
Sbjct: 70 GSGGGA-GGGWG 80
Score = 55.5 bits (132), Expect = 6e-06
Identities = 33/97 (34%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Frame = -2
Query: 564 GTGGWGXXXXXXXXXXXXXXXXXSGWSSGNQTGGWGSSGAGNKDDAQGSEWGSRDGGKKT 385
G GGWG S G GGWGS G GN WGS GG
Sbjct: 45 GRGGWGSGGGGGGGWGSGGGAGGGWGSGGGAGGGWGSGGGGN------GGWGSGGGG--- 95
Query: 384 ELPGSGWGGGGDENASGG-----WGSSKAAQGSGWGD 289
G GWG GG SGG WGS + G+ +
Sbjct: 96 ---GGGWGSGGGGRGSGGGSNGGWGSGRGGSAHGFSN 129
>ref|XP_823301.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1] gi|70832969|gb|EAN78473.1| RNA-binding
protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 320
Score = 58.5 bits (140), Expect = 7e-07
Identities = 34/72 (47%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = -2
Query: 492 GWSSGNQTGGWGS-SGAGNKDDAQGS----EWGSRDGGKKTELPGSGWGGGGDENASGGW 328
GW G+ GGWGS G GN GS WGS GG G GWG GG N GGW
Sbjct: 18 GWGGGSSGGGWGSDDGPGNGSGGGGSGGRGGWGSGGGG------GGGWGSGGGGN--GGW 69
Query: 327 GSSKAAQGSGWG 292
GS G GWG
Sbjct: 70 GSG-GGGGGGWG 80
Score = 56.6 bits (135), Expect = 3e-06
Identities = 34/96 (35%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Frame = -2
Query: 558 GGWGXXXXXXXXXXXXXXXXXSGWSSGNQTGG-WGSSGAGNKDDAQGSEWGSRDGGKKTE 382
GGWG GW SG GG WGS G GN WGS GG
Sbjct: 26 GGWGSDDGPGNGSGGGGSGGRGGWGSGGGGGGGWGSGGGGN------GGWGSGGGG---- 75
Query: 381 LPGSGWGGGGDENAS-----GGWGSSKAAQGSGWGD 289
G GWG GG S GGWGS + G+ +
Sbjct: 76 --GGGWGSGGGGRGSGGGSNGGWGSGRGGSAHGFSN 109
>emb|CCC94134.1| putative RNA-binding protein, partial [Trypanosoma congolense
IL3000]
Length = 171
Score = 57.8 bits (138), Expect = 1e-06
Identities = 38/98 (38%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Frame = -2
Query: 564 GTGGWGXXXXXXXXXXXXXXXXXSGWSSGNQ----TGGWGSSGAGNKDDAQGSEWGSRDG 397
G+GGWG GW SG +GGWGS G G WGS G
Sbjct: 38 GSGGWGSGGGGGGGSG--------GWGSGGGGGGGSGGWGSGGGGG---GGSGGWGSGGG 86
Query: 396 GKKTELPGSGWG-GGGDENASGGWGS--SKAAQGSGWG 292
G GWG GGG SGGWGS + GSGWG
Sbjct: 87 GGGGS---GGWGSGGGGGGGSGGWGSGGGRGGGGSGWG 121
Score = 57.8 bits (138), Expect = 1e-06
Identities = 34/97 (35%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Frame = -2
Query: 567 WGTGGWGXXXXXXXXXXXXXXXXXSGWSSGNQ----TGGWGSSGAGNKDDAQGSEWGSRD 400
WG+GG G GW SG +GGWGS G G G R
Sbjct: 55 WGSGGGGGGGSGGWGSGGGGGGGSGGWGSGGGGGGGSGGWGSGGGGGGGSGGWGSGGGRG 114
Query: 399 GGKKTELPGSGWGGGGDENASGGWGSSKAAQGSGWGD 289
GG GSGWG GG+ GG G GS W D
Sbjct: 115 GG------GSGWGSGGNSRGGGGRGF-----GSSWND 140