BLASTX nr result
ID: Atractylodes21_contig00024501
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Atractylodes21_contig00024501
(554 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI31382.3| unnamed protein product [Vitis vinifera] 87 5e-34
ref|XP_002264331.2| PREDICTED: RNA-binding protein Nova-1-like [... 87 5e-34
ref|XP_002532622.1| Far upstream element-binding protein, putati... 84 4e-31
ref|XP_004142445.1| PREDICTED: RNA-binding protein Nova-2-like [... 87 2e-28
ref|NP_196063.1| binding to TOMV RNA 1L (long form) protein [Ara... 76 5e-28
>emb|CBI31382.3| unnamed protein product [Vitis vinifera]
Length = 357
Score = 86.7 bits (213), Expect(2) = 5e-34
Identities = 43/76 (56%), Positives = 53/76 (69%)
Frame = +3
Query: 3 SGTIDEVLDAVELILTKLLNEFYAEDGEEVEPKSKVRLIVPNXXXXXXXXXXXXXXXXFI 182
SG +E++ A+ELIL KLL+E + EDG+E +P+SKVRLIVPN FI
Sbjct: 135 SGATNEIIKAMELILAKLLSEMHTEDGDEADPRSKVRLIVPNSSCGGIIGKGGSTIKSFI 194
Query: 183 EDSQANIKISPQDNNY 230
EDSQA+IKISPQDNNY
Sbjct: 195 EDSQASIKISPQDNNY 210
Score = 83.2 bits (204), Expect(2) = 5e-34
Identities = 43/80 (53%), Positives = 56/80 (70%)
Frame = +2
Query: 314 DNNYIGLSDRLVTVIGTLPQLVQAINLILLKLSEDLYYIQSIGPPFPYAAPYNVPNYRPH 493
DNNY+GL+DRLVT++G+L + ++AI+LIL KL+ED +Y Q + PF YAA YN NY P+
Sbjct: 207 DNNYLGLTDRLVTLMGSLEEQMRAIDLILSKLTEDPHYTQFMNAPFSYAAAYNSMNYGPN 266
Query: 494 GVGGKXXXXXXXXXKEDISN 553
G GGK KED SN
Sbjct: 267 GAGGK-----FQNNKEDRSN 281
>ref|XP_002264331.2| PREDICTED: RNA-binding protein Nova-1-like [Vitis vinifera]
Length = 309
Score = 86.7 bits (213), Expect(2) = 5e-34
Identities = 43/76 (56%), Positives = 53/76 (69%)
Frame = +3
Query: 3 SGTIDEVLDAVELILTKLLNEFYAEDGEEVEPKSKVRLIVPNXXXXXXXXXXXXXXXXFI 182
SG +E++ A+ELIL KLL+E + EDG+E +P+SKVRLIVPN FI
Sbjct: 87 SGATNEIIKAMELILAKLLSEMHTEDGDEADPRSKVRLIVPNSSCGGIIGKGGSTIKSFI 146
Query: 183 EDSQANIKISPQDNNY 230
EDSQA+IKISPQDNNY
Sbjct: 147 EDSQASIKISPQDNNY 162
Score = 83.2 bits (204), Expect(2) = 5e-34
Identities = 43/80 (53%), Positives = 56/80 (70%)
Frame = +2
Query: 314 DNNYIGLSDRLVTVIGTLPQLVQAINLILLKLSEDLYYIQSIGPPFPYAAPYNVPNYRPH 493
DNNY+GL+DRLVT++G+L + ++AI+LIL KL+ED +Y Q + PF YAA YN NY P+
Sbjct: 159 DNNYLGLTDRLVTLMGSLEEQMRAIDLILSKLTEDPHYTQFMNAPFSYAAAYNSMNYGPN 218
Query: 494 GVGGKXXXXXXXXXKEDISN 553
G GGK KED SN
Sbjct: 219 GAGGK-----FQNNKEDRSN 233
>ref|XP_002532622.1| Far upstream element-binding protein, putative [Ricinus communis]
gi|223527642|gb|EEF29753.1| Far upstream element-binding
protein, putative [Ricinus communis]
Length = 314
Score = 84.0 bits (206), Expect(2) = 4e-31
Identities = 40/76 (52%), Positives = 53/76 (69%)
Frame = +3
Query: 3 SGTIDEVLDAVELILTKLLNEFYAEDGEEVEPKSKVRLIVPNXXXXXXXXXXXXXXXXFI 182
SG +D+VL VEL+L KLL+E + EDG++V+P++KVRL+VPN FI
Sbjct: 89 SGILDDVLKGVELVLAKLLSELHTEDGDDVDPRTKVRLVVPNSSCGSIIGKGGSIIKSFI 148
Query: 183 EDSQANIKISPQDNNY 230
E+SQA IKISPQDNN+
Sbjct: 149 EESQAGIKISPQDNNF 164
Score = 76.3 bits (186), Expect(2) = 4e-31
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +2
Query: 314 DNNYIGLSDRLVTVIGTLPQLVQAINLILLKLSEDLYYIQSIGPPFPYAAPYNVPNYRPH 493
DNN+ GL+DRLVTV GTL + ++AI+LIL KL +D +Y+Q++ PF YA YN NY +
Sbjct: 161 DNNFYGLNDRLVTVTGTLEEQMRAIDLILSKLYDDPHYVQTMHAPFSYAVAYNSMNYGAN 220
Query: 494 GVGGK 508
G GGK
Sbjct: 221 GAGGK 225
>ref|XP_004142445.1| PREDICTED: RNA-binding protein Nova-2-like [Cucumis sativus]
gi|449527683|ref|XP_004170839.1| PREDICTED: RNA-binding
protein Nova-2-like [Cucumis sativus]
Length = 326
Score = 87.4 bits (215), Expect(2) = 2e-28
Identities = 43/76 (56%), Positives = 56/76 (73%)
Frame = +3
Query: 3 SGTIDEVLDAVELILTKLLNEFYAEDGEEVEPKSKVRLIVPNXXXXXXXXXXXXXXXXFI 182
SG+I+E+L A+EL+L KLL+E +AE+G++VEP++KVRLIVP+ FI
Sbjct: 88 SGSINEILKAMELVLAKLLSELHAEEGDDVEPRTKVRLIVPHSSCGAIIGKGGSTIKSFI 147
Query: 183 EDSQANIKISPQDNNY 230
EDSQA IKISPQDNNY
Sbjct: 148 EDSQAGIKISPQDNNY 163
Score = 63.5 bits (153), Expect(2) = 2e-28
Identities = 30/63 (47%), Positives = 43/63 (68%)
Frame = +2
Query: 314 DNNYIGLSDRLVTVIGTLPQLVQAINLILLKLSEDLYYIQSIGPPFPYAAPYNVPNYRPH 493
DNNY+ +DRLVT+ GT+ + ++A +LI+ KLSED +Y QS+ PF Y +N NY +
Sbjct: 160 DNNYMASTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQSMNYPFSYPTSFNAMNYGSN 219
Query: 494 GVG 502
G G
Sbjct: 220 GGG 222
>ref|NP_196063.1| binding to TOMV RNA 1L (long form) protein [Arabidopsis thaliana]
gi|14030641|gb|AAK52995.1|AF375411_1 AT5g04430/T32M21_30
[Arabidopsis thaliana] gi|7406447|emb|CAB85549.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|21554568|gb|AAM63617.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|23507775|gb|AAN38691.1|
At5g04430/T32M21_30 [Arabidopsis thaliana]
gi|332003361|gb|AED90744.1| binding to TOMV RNA 1L (long
form) protein [Arabidopsis thaliana]
Length = 313
Score = 75.9 bits (185), Expect(2) = 5e-28
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +2
Query: 314 DNNYIGLSDRLVTVIGTLPQLVQAINLILLKLSEDLYYIQSIGPPFPYAAPYNVPNYRPH 493
DN + GLSDRLVT+ GT + ++AI+LIL KL+ED +Y Q++ P+ YAA YN NY P+
Sbjct: 160 DNTFYGLSDRLVTLSGTFEEQMRAIDLILAKLTEDDHYSQNVHSPYSYAAGYNSVNYAPN 219
Query: 494 GVGGK 508
G GGK
Sbjct: 220 GSGGK 224
Score = 73.9 bits (180), Expect(2) = 5e-28
Identities = 37/76 (48%), Positives = 50/76 (65%)
Frame = +3
Query: 3 SGTIDEVLDAVELILTKLLNEFYAEDGEEVEPKSKVRLIVPNXXXXXXXXXXXXXXXXFI 182
SG+I EV++ +ELIL KL +E +AEDG EVEP+ ++RL+VPN FI
Sbjct: 88 SGSIKEVVNGLELILDKLHSELHAEDGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKSFI 147
Query: 183 EDSQANIKISPQDNNY 230
E+S+A IKISP DN +
Sbjct: 148 EESKAGIKISPLDNTF 163