BLASTX nr result

ID: Atractylodes21_contig00006495 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Atractylodes21_contig00006495
         (434 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002509918.1| DNA binding protein, putative [Ricinus commu...    64   2e-08
ref|XP_002299493.1| AP2/ERF domain-containing transcription fact...    58   9e-07
ref|XP_002303625.1| AP2/ERF domain-containing transcription fact...    56   3e-06

>ref|XP_002509918.1| DNA binding protein, putative [Ricinus communis]
           gi|223549817|gb|EEF51305.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 313

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 52/147 (35%), Positives = 62/147 (42%), Gaps = 4/147 (2%)
 Frame = +1

Query: 1   RGPGALTNFTIPPPSSLSSGYNSGNESHNNSITNKTTSPKSVLRFPSSSMDKSAAESTHH 180
           RG  ALTNF I PP+ LS   NSG ES N        SP SVLRFPSS+     AES   
Sbjct: 161 RGSDALTNF-ITPPAKLSEPSNSGEESQN------VCSPISVLRFPSSTSSNEEAESQGA 213

Query: 181 SPSNDGANEASELTALPDTFSDFRPXXXXXXXXXXXXXAKLDHCIFDPTMFQE---SDPL 351
             S+   NE  ++        +F                 +     +  M Q+   SD L
Sbjct: 214 VFSSKENNEIRDMKEESSVSENFSECSSMFPNYFFDFQTSMRDIFEETNMVQDGFLSDDL 273

Query: 352 -DMFFVSSKDFSIGSSSWPTGDDYLHD 429
            DMF  +S DF  G SSW    D   D
Sbjct: 274 GDMFLDTSVDFGFGLSSWNNTQDNFQD 300


>ref|XP_002299493.1| AP2/ERF domain-containing transcription factor [Populus
           trichocarpa] gi|222846751|gb|EEE84298.1| AP2/ERF
           domain-containing transcription factor [Populus
           trichocarpa]
          Length = 347

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 51/159 (32%), Positives = 66/159 (41%), Gaps = 19/159 (11%)
 Frame = +1

Query: 1   RGPGALTNFTIPP----PSSLSSGYNSGNESHNNSITNK-----TTSPKSVLRFPSSSMD 153
           RGP ALTNF  PP    P + +SGY SG+ES++N   N       +SP SVLRF   +  
Sbjct: 177 RGPDALTNFVTPPARCSPLAATSGYISGDESNSNYNINNDGVVNVSSPISVLRFSEEAET 236

Query: 154 KSAAESTHHSPSNDGANEASELTALPDTFSDFRPXXXXXXXXXXXXXAKLDHC------- 312
           +SA+ S     +     E  E + + +  SDF                  D C       
Sbjct: 237 QSASSSREIRDTGTEVPEVKEDSCVSENLSDF---SEYNSSIDSLFPPTTDICELRSSMR 293

Query: 313 -IFDPTMFQESDPL--DMFFVSSKDFSIGSSSWPTGDDY 420
            IF+ T F     L  D F     DF  G SSW   D +
Sbjct: 294 NIFEETSFAAGGFLKDDDFRDMDLDFGFGLSSWNVQDHF 332


>ref|XP_002303625.1| AP2/ERF domain-containing transcription factor [Populus
           trichocarpa] gi|222841057|gb|EEE78604.1| AP2/ERF
           domain-containing transcription factor [Populus
           trichocarpa]
          Length = 348

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
 Frame = +1

Query: 1   RGPGALTNFTIPP----PSSLSSGYNSGNESHNNSITNK----TTSPKSVLRFPSSSMDK 156
           RG  ALTNF  PP    P++ +SGY SG+ES++N   N      +SP SVLRF   +  +
Sbjct: 174 RGADALTNFVTPPARCSPAAATSGYISGDESNSNHNINNDNVNVSSPISVLRFSEEAESQ 233

Query: 157 SAAESTHHSPSNDGANEASELTALPDTFSDF 249
           S   S     + +   E  E + + + FSDF
Sbjct: 234 SVGSSRETRKTGNEVREVKEDSCVSENFSDF 264


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