BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00024182
         (1400 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNY02741.1| retrovirus-related Pol polyprotein from transposo...   416   e-131
gb|PNX99662.1| retrovirus-related Pol polyprotein from transposo...   411   e-130
gb|PNY10806.1| histone deacetylase [Trifolium pratense]               413   e-128
gb|PNY12955.1| retrovirus-related Pol polyprotein from transposo...   386   e-126
gb|PNX78102.1| retrovirus-related Pol polyprotein from transposo...   385   e-126
gb|PNX77046.1| retrovirus-related Pol polyprotein from transposo...   370   e-120
gb|PNX92571.1| histone deacetylase [Trifolium pratense]               362   e-119
dbj|GAU27211.1| hypothetical protein TSUD_108020 [Trifolium subt...   380   e-119
gb|PNX84939.1| retrovirus-related Pol polyprotein from transposo...   366   e-119
gb|PNX93770.1| histone deacetylase [Trifolium pratense]               386   e-118
gb|PNX94499.1| retrovirus-related Pol polyprotein from transposo...   385   e-117
gb|PNX66338.1| retrovirus-related Pol polyprotein from transposo...   353   e-117
gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense]      384   e-117
gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposo...   357   e-117
gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposo...   361   e-116
gb|PNX92906.1| retrovirus-related Pol polyprotein from transposo...   378   e-116
gb|PNX93094.1| histone deacetylase, partial [Trifolium pratense]      382   e-116
gb|PNY18109.1| retrovirus-related Pol polyprotein from transposo...   377   e-115
dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subt...   379   e-115
gb|PNX93512.1| histone deacetylase, partial [Trifolium pratense]      378   e-115

>gb|PNY02741.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1054

 Score =  416 bits (1068), Expect = e-131
 Identities = 199/294 (67%), Positives = 236/294 (80%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            MVTR KTGNLKP+VFL H EP++VK AL  P WL AMKAEY AL+ N TWSL  LP +R+
Sbjct: 630  MVTRGKTGNLKPKVFLAHSEPSNVKQALADPQWLTAMKAEYSALMNNQTWSLVPLPAHRR 689

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKWVFR+KENP+G+VNKYKARLV KGYSQ  G DY ETFSPV+KP T RI+L+L I+
Sbjct: 690  AIGCKWVFRIKENPDGSVNKYKARLVAKGYSQEQGFDYNETFSPVVKPVTIRIILTLAIS 749

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            +KW IQQIDI NAF+NG LQEE+YM QPPGF++ +  LVC+LHR+LYGLKQAPRAWYERL
Sbjct: 750  FKWDIQQIDINNAFLNGILQEEVYMTQPPGFISSDSSLVCRLHRALYGLKQAPRAWYERL 809

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
              AL++FGF PSKC  SLFVYT   + LY LVYVDDIL+TGS   L+  LI+KL + FAL
Sbjct: 810  TQALVRFGFQPSKCDPSLFVYTHKGITLYVLVYVDDILLTGSSSSLLQDLISKLNSQFAL 869

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            KHMG P+YFLGIEV +L NG+MLLTQ+KY  DLL RANM     ++TPM+S++K
Sbjct: 870  KHMGRPDYFLGIEVHHLPNGNMLLTQSKYIRDLLHRANMAEAKGINTPMVSSLK 923



 Score =  110 bits (276), Expect = 5e-22
 Identities = 56/89 (62%), Positives = 67/89 (75%)
 Frame = -2

Query: 268  PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
            P V +  +    SD L DP +YRSIVGALQYVTL RP+IAF VNKVCQFL+ PL +HW+A
Sbjct: 917  PMVSSLKLSRFGSDSLPDPHEYRSIVGALQYVTLTRPEIAFCVNKVCQFLSNPLLTHWQA 976

Query: 88   VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
            VKRILRYL  T H GLLL+P+S  + FS+
Sbjct: 977  VKRILRYLLHTCHHGLLLKPSSAVSKFSI 1005


>gb|PNX99662.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1046

 Score =  411 bits (1057), Expect = e-130
 Identities = 201/294 (68%), Positives = 233/294 (79%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            MVTR KTGNLKP+VFL H EP +VK AL  P WL AMK EY AL+KN TWSL  LP +R+
Sbjct: 515  MVTRGKTGNLKPKVFLAHSEPGTVKQALADPQWLAAMKCEYSALMKNETWSLVPLPAHRR 574

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKWVFR+KENP+G+VNKYKARLV KG+SQ  G DY ETFSPV+KP T RI+L+L I+
Sbjct: 575  AIGCKWVFRIKENPDGSVNKYKARLVAKGFSQEHGFDYTETFSPVVKPVTIRIILTLAIS 634

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            +KW IQQID+ NAF+NG L EE+YM QPPGFV+ +K LVCKLH++LYGLKQAPRAWYERL
Sbjct: 635  FKWDIQQIDVNNAFLNGILHEEVYMVQPPGFVSTDKTLVCKLHKALYGLKQAPRAWYERL 694

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
              ALL FGF  SKC  SLFVY    V LY LVYVDDIL+TGS   L+H LI KL + FAL
Sbjct: 695  TQALLHFGFHASKCDPSLFVYNHKDVTLYVLVYVDDILLTGSSSALLHDLILKLNSQFAL 754

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            KHMG P+YFLGIEVK+L NGS+LLTQ+KY  DLL RANM     +STPM+S++K
Sbjct: 755  KHMGKPDYFLGIEVKHLHNGSILLTQSKYIRDLLHRANMAEAKGISTPMVSSLK 808



 Score =  115 bits (287), Expect = 2e-23
 Identities = 57/89 (64%), Positives = 68/89 (76%)
 Frame = -2

Query: 268  PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
            P V +  +    +D L DP +YRSIVGALQYVTL RP+IAF VNK+CQFLA PL SHW+A
Sbjct: 802  PMVSSLKLSRFGTDTLPDPHEYRSIVGALQYVTLTRPEIAFCVNKMCQFLANPLLSHWQA 861

Query: 88   VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
            VKRILRYL  T HLGLLLQP++  + FS+
Sbjct: 862  VKRILRYLLSTCHLGLLLQPSAAVSKFSI 890


>gb|PNY10806.1| histone deacetylase [Trifolium pratense]
          Length = 1441

 Score =  413 bits (1061), Expect = e-128
 Identities = 196/294 (66%), Positives = 238/294 (80%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            MVTR KTGNLKP+VFL H EP SVK ALT P+WL AM+AEY AL+ N TWSL  LP +R+
Sbjct: 908  MVTRGKTGNLKPKVFLAHKEPHSVKHALTDPNWLKAMEAEYSALLHNKTWSLVPLPAHRR 967

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKWVFR+KENP+G++NKYKARLV KG+SQ PG D+ ETFSPV+KP T RI+L+L ++
Sbjct: 968  AIGCKWVFRIKENPDGSINKYKARLVAKGFSQEPGFDFKETFSPVVKPVTIRIILTLALS 1027

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            +KW IQQIDI NAF+NG LQEE+YM QPPGF N +K LVCKLH++LYGLKQAPRAWY+RL
Sbjct: 1028 FKWDIQQIDINNAFLNGILQEEVYMSQPPGFGNGDKSLVCKLHKALYGLKQAPRAWYDRL 1087

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
              AL+ FGF PSKC  SLFVY+   V +Y LVYVDDIL+TGS   ++H LI KL + FAL
Sbjct: 1088 AQALVSFGFHPSKCDPSLFVYSHQGVTMYVLVYVDDILLTGSSSPILHDLIAKLHSQFAL 1147

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            KHMG P+YFLGIEV+YL +G++LLTQ+KY  DLL RANM     ++TPM+S++K
Sbjct: 1148 KHMGRPDYFLGIEVRYLPSGNILLTQSKYIRDLLHRANMADAKGINTPMVSSLK 1201



 Score =  108 bits (271), Expect = 2e-21
 Identities = 56/89 (62%), Positives = 65/89 (73%)
 Frame = -2

Query: 268  PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
            P V +  +    +D L DP +YRSIVGALQYVTL RPDIAF VNKVCQFL+ PL SHW+A
Sbjct: 1195 PMVSSLKLSKFGTDELPDPLEYRSIVGALQYVTLTRPDIAFCVNKVCQFLSRPLLSHWQA 1254

Query: 88   VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
            VKRILRYL  T   GLLLQP+   + FS+
Sbjct: 1255 VKRILRYLLHTSSHGLLLQPSQAVSKFSI 1283


>gb|PNY12955.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 535

 Score =  386 bits (992), Expect = e-126
 Identities = 183/294 (62%), Positives = 226/294 (76%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            MVTR KTGNLKP+VF   LEPT++K ALT P WL AM+ EY+AL+ N TWSL  LPP+++
Sbjct: 1    MVTRGKTGNLKPKVFTVSLEPTTIKAALTDPKWLHAMQNEYKALMDNNTWSLVPLPPHKK 60

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKW+FRVKEN +GTVNK+KARLV KG+ Q PG D+ ETFSPVIKP T R++L+L +T
Sbjct: 61   AIGCKWIFRVKENSDGTVNKFKARLVAKGFLQTPGFDFTETFSPVIKPITIRVILTLAVT 120

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            YKW +QQID+ NAF+NG LQEE+YM+QP GF + +K LVCKLH+SLYGLKQAPRAWYERL
Sbjct: 121  YKWPVQQIDVNNAFLNGWLQEEVYMKQPAGFESSDKSLVCKLHKSLYGLKQAPRAWYERL 180

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
              ALLQ GF  SKC  SL ++ +     Y L+YVDDILITGS P LI  LI KL + FAL
Sbjct: 181  TQALLQMGFVTSKCDPSLLIHYQQGACTYVLIYVDDILITGSAPHLIKDLIHKLNSQFAL 240

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            K +G  +YFLGIEV ++ +G +LL Q+KY  DLL R NM  C P+ +PM+S+ +
Sbjct: 241  KQLGEVDYFLGIEVHHMPSGGLLLNQSKYIRDLLCRTNMENCKPIGSPMVSSCR 294



 Score =  110 bits (276), Expect = 2e-22
 Identities = 54/89 (60%), Positives = 65/89 (73%)
 Frame = -2

Query: 268 PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
           P V +  +    +D ++DP  YRS VGALQY TL RPDIAFSVNKVCQF+A PL++HW+A
Sbjct: 288 PMVSSCRLSKFGTDAMSDPSLYRSTVGALQYATLTRPDIAFSVNKVCQFMAHPLETHWKA 347

Query: 88  VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
           VKRILRYL GT   GLLL P+    PFS+
Sbjct: 348 VKRILRYLKGTTTHGLLLNPSPSGPPFSL 376


>gb|PNX78102.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 535

 Score =  385 bits (989), Expect = e-126
 Identities = 183/294 (62%), Positives = 226/294 (76%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            M+TR KTGNLKP+ F   + PT+VK+AL  PHWL AM+AEY+AL+ N TWSL  LPP+R+
Sbjct: 1    MITRTKTGNLKPKTFTASIAPTNVKSALAEPHWLQAMQAEYKALMDNKTWSLVPLPPHRK 60

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKW+FRVKENP+G++NKYKARLV KG+ Q PG D+ ETFSPVIKP T RI+L+L +T
Sbjct: 61   AIGCKWIFRVKENPDGSINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILTLAVT 120

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            YKW +QQIDI NAF+NG LQEE+YM QPPGF + +K LVCKLH++LYGLKQAPRAWY+RL
Sbjct: 121  YKWSVQQIDINNAFLNGILQEEVYMTQPPGFESSDKNLVCKLHKALYGLKQAPRAWYDRL 180

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
               LLQ GFT S+C  SL V+ +     Y LVYVDDILITGS P LI  LI KL   FAL
Sbjct: 181  TQTLLQMGFTKSRCDPSLLVHHQNGACTYVLVYVDDILITGSAPHLIKDLIHKLNIKFAL 240

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            K +G  +YFLG+EV + ++GS+LL Q+KY  DLL +  M  C P+ +PM+S+ K
Sbjct: 241  KQLGEVDYFLGLEVHHSTSGSILLHQSKYIKDLLCKTKMENCKPIGSPMVSSCK 294



 Score =  115 bits (288), Expect = 6e-24
 Identities = 55/89 (61%), Positives = 66/89 (74%)
 Frame = -2

Query: 268 PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
           P V +  +    +D + DP  YRS VGALQY TL RPDIAFSVNKVCQF+A PL+SHW+A
Sbjct: 288 PMVSSCKLSKFGTDTMEDPSLYRSTVGALQYATLTRPDIAFSVNKVCQFMAHPLESHWKA 347

Query: 88  VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
           VKRILRYL GT++ GLLL P+    PFS+
Sbjct: 348 VKRILRYLKGTENHGLLLHPSKSSPPFSI 376


>gb|PNX77046.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 515

 Score =  370 bits (949), Expect = e-120
 Identities = 175/294 (59%), Positives = 218/294 (74%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            M+TRAKTG+LKP+ F T  EPT+VK+AL  P WL AM+ E++AL  N TWSL  LPP+++
Sbjct: 74   MITRAKTGHLKPKAFTTIFEPTTVKSALADPQWLQAMQTEFKALTDNNTWSLVPLPPHKK 133

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKW+FR+KENP+GT+NKYKARLV KG+ Q PG D+ ETFSPVIKP T RI+L+L +T
Sbjct: 134  AIGCKWIFRIKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILTLAVT 193

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            YKW +QQIDI NAF+NG L EE+YM QP GF + +K LVCKLH+SLYGLKQAPRAWYERL
Sbjct: 194  YKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAWYERL 253

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
               LLQ GF  SKC  SL V  +     Y L+YVDDILITGS P LI  +I KL    AL
Sbjct: 254  TQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGSAPHLIQDVIQKLNFKLAL 313

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            K +G  +YFLGIEV   ++G ++L Q+KY  DLL +  M  C P+ +PM+++ +
Sbjct: 314  KQLGEVDYFLGIEVHKTASGGLILNQSKYIRDLLCKTTMDNCKPIGSPMVNSCR 367



 Score =  113 bits (282), Expect = 3e-23
 Identities = 54/89 (60%), Positives = 67/89 (75%)
 Frame = -2

Query: 268 PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
           P V++  +    +D ++DP  YRS VGALQY TL RPDI+FSVNKVCQF+A PL+SHW+A
Sbjct: 361 PMVNSCRLSRFGTDAMSDPSLYRSTVGALQYATLTRPDISFSVNKVCQFIAHPLESHWKA 420

Query: 88  VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
           VKRILRYL GT + GLLL P+    PFS+
Sbjct: 421 VKRILRYLKGTVNHGLLLHPSPSSPPFSL 449


>gb|PNX92571.1| histone deacetylase [Trifolium pratense]
          Length = 1488

 Score =  362 bits (930), Expect(2) = e-119
 Identities = 174/294 (59%), Positives = 218/294 (74%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            M TRAK+G  +P++ + H EP SVK AL  P W  AM+ EY AL+ N TW+L  LPP+RQ
Sbjct: 957  MQTRAKSGFKQPKLLVAHSEPKSVKQALLDPSWHAAMQTEYDALLNNNTWTLVPLPPDRQ 1016

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKWVFR+KENP+GTVNKYKARLV KG+ Q  G D+ ETFSPV+KP T R++L++ IT
Sbjct: 1017 AIGCKWVFRIKENPDGTVNKYKARLVAKGFHQRQGFDFLETFSPVVKPVTIRVILTIAIT 1076

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
              W IQQ+D+ NAF+NG L EE+YM QP GF + +  LVCKLH++LYGLKQAPR W+ERL
Sbjct: 1077 KGWSIQQLDVNNAFLNGVLDEEVYMLQPQGFESSDSSLVCKLHKALYGLKQAPRQWFERL 1136

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
            ++ LL  GF  SKC  SLFVY+ A   +Y LVYVDDI+IT +   L+H  I+KL   F+L
Sbjct: 1137 QSTLLLLGFKSSKCDPSLFVYSSATDTIYLLVYVDDIIITSNNTTLLHSTISKLNKAFSL 1196

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            KH+G  +YFLGIEV +LS+GS+LLTQ+KY  DLL R +M   SP+STPM S  K
Sbjct: 1197 KHLGNLDYFLGIEVHHLSSGSLLLTQSKYLRDLLTRTHMLDSSPVSTPMQSTCK 1250



 Score = 98.2 bits (243), Expect(2) = e-119
 Identities = 48/77 (62%), Positives = 57/77 (74%)
 Frame = -2

Query: 232  SDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRAVKRILRYLSGTQ 53
            S  L DP  YRS+VGALQY T+ RP+I+FSVNK CQF++ PL++HW AVKRILRYL GT 
Sbjct: 1256 SSPLDDPFMYRSVVGALQYATITRPEISFSVNKACQFMSHPLETHWIAVKRILRYLKGTL 1315

Query: 52   HLGLLLQPASQDNPFSV 2
              GLLL PA    P S+
Sbjct: 1316 DHGLLLSPALPPKPPSL 1332


>dbj|GAU27211.1| hypothetical protein TSUD_108020 [Trifolium subterraneum]
          Length = 967

 Score =  380 bits (975), Expect = e-119
 Identities = 186/294 (63%), Positives = 222/294 (75%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            MVTR KTGNLKP++F   LEPTSVKTAL  P WL AM+ EY+AL+ N TWSL  LP +R+
Sbjct: 467  MVTRGKTGNLKPKIFSATLEPTSVKTALKDPKWLHAMQNEYKALMDNKTWSLVPLPSHRK 526

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             I CKW+F+VKENP+GTVNKYKARLV +G+ Q PG D+ ETFSPVIKP T RI+L+LV+T
Sbjct: 527  VISCKWIFKVKENPDGTVNKYKARLVARGFLQTPGFDFTETFSPVIKPTTIRIILTLVVT 586

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            YKW IQQID+ NAF+NG LQEE+YM Q  GF   +K LVCKLH+SLYGLKQAPRAWYERL
Sbjct: 587  YKWLIQQIDVKNAFLNGVLQEEVYMTQLAGFEVADKTLVCKLHKSLYGLKQAPRAWYERL 646

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
              ALLQ GF  SKC  SL ++ +     Y L+YVDDILITGS P LIH LI KL   FAL
Sbjct: 647  TQALLQMGFVTSKCDPSLLIHHQKGACTYVLIYVDDILITGSTPHLIHDLIHKLNVKFAL 706

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            K +G  +YFLGIEV ++ +G +LL Q+KY  DLL R NM  C  + +PM+S+ K
Sbjct: 707  KQLGEVDYFLGIEVHHMPSGDLLLNQSKYVRDLLSRTNMENCKAIGSPMVSSCK 760



 Score =  113 bits (283), Expect = 6e-23
 Identities = 54/89 (60%), Positives = 67/89 (75%)
 Frame = -2

Query: 268  PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
            P V +  +    +D ++DP  YRS VGALQY TL RPDI+FSVNKVCQF+A PL++HW+A
Sbjct: 754  PMVSSCKLSKFGTDSMSDPSLYRSTVGALQYATLTRPDISFSVNKVCQFMANPLETHWKA 813

Query: 88   VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
            VKRILRYL GT + GLLL P+S   PFS+
Sbjct: 814  VKRILRYLKGTSNHGLLLHPSSSSPPFSL 842


>gb|PNX84939.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 499

 Score =  366 bits (939), Expect = e-119
 Identities = 174/294 (59%), Positives = 217/294 (73%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            M+TRAKTG+LK + F T  EPT+VK+AL  P WL AM+ E++AL  N TWSL  LPP+++
Sbjct: 58   MITRAKTGHLKLKAFTTIFEPTTVKSALADPQWLQAMQTEFKALTDNNTWSLVPLPPHKK 117

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKW+FR+KENP+GT+NKYKARLV KG+ Q PG D+ ETFSPVIKP T RI+L+L +T
Sbjct: 118  AIGCKWIFRIKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILTLAVT 177

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            YKW +QQIDI NAF+NG L EE+YM QP GF + +K LVCKLH+SLYGLKQAPRAWYERL
Sbjct: 178  YKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAWYERL 237

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
               LLQ GF  SKC  SL V  +     Y L+YVDDILITGS P LI  +I KL    AL
Sbjct: 238  TQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGSAPHLIQDVIQKLNFKLAL 297

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            K +G  +YFLGIEV   ++G ++L Q+KY  DLL +  M  C P+ +PM+++ +
Sbjct: 298  KQLGEVDYFLGIEVHKTASGGLILNQSKYIRDLLCKTTMDNCKPIGSPMVNSCR 351



 Score =  113 bits (282), Expect = 3e-23
 Identities = 54/89 (60%), Positives = 67/89 (75%)
 Frame = -2

Query: 268 PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
           P V++  +    +D ++DP  YRS VGALQY TL RPDI+FSVNKVCQF+A PL+SHW+A
Sbjct: 345 PMVNSCRLSRFGTDAMSDPSLYRSTVGALQYATLTRPDISFSVNKVCQFIAHPLESHWKA 404

Query: 88  VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
           VKRILRYL GT + GLLL P+    PFS+
Sbjct: 405 VKRILRYLKGTVNHGLLLHPSPSSPPFSL 433


>gb|PNX93770.1| histone deacetylase [Trifolium pratense]
          Length = 1453

 Score =  386 bits (992), Expect = e-118
 Identities = 183/294 (62%), Positives = 222/294 (75%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            M+TR KTGNLKP+ F   LEPTSVK AL  P WL AM++EY+AL+ N TWSL  LPP+++
Sbjct: 921  MITRGKTGNLKPKTFTASLEPTSVKNALNDPQWLKAMQSEYKALMDNNTWSLVSLPPHKK 980

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKW+FRVKENP+GT+NKYKARLV KG+ Q PG D+ ETFSPVIKP T R++L+L +T
Sbjct: 981  AIGCKWIFRVKENPDGTINKYKARLVAKGFLQTPGFDFKETFSPVIKPTTIRVILTLAVT 1040

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            YKW IQQID+ NAF+NG LQEE+YM QPPGF   +K LVCKLH+SLYGLKQAPRAWYERL
Sbjct: 1041 YKWSIQQIDVNNAFLNGLLQEEVYMSQPPGFEATDKSLVCKLHKSLYGLKQAPRAWYERL 1100

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
              ALLQ GF  SKC  SL V+ +     Y L+YVDDILITGS P LI  LI KL   F+L
Sbjct: 1101 TQALLQMGFVTSKCDPSLLVHHQQGACTYVLIYVDDILITGSAPHLIQDLIHKLNIQFSL 1160

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            K +G  +YFLGIEV ++ +G +LL Q+KY  DLL R  M  C  + +PM+S+ +
Sbjct: 1161 KQLGEVDYFLGIEVHHMPSGGLLLNQSKYIKDLLSRTKMENCKAIGSPMVSSCR 1214



 Score =  108 bits (271), Expect = 2e-21
 Identities = 51/89 (57%), Positives = 66/89 (74%)
 Frame = -2

Query: 268  PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
            P V +  +    +D ++DP  YRS VGALQY TL RPDI++SVNKVCQF++ PL++HW+A
Sbjct: 1208 PMVSSCRLSKFGTDSMSDPSLYRSTVGALQYATLTRPDISYSVNKVCQFMSNPLETHWKA 1267

Query: 88   VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
            VKRILRYL GT + GLLL P+    PFS+
Sbjct: 1268 VKRILRYLKGTSNHGLLLHPSPSSPPFSL 1296


>gb|PNX94499.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1434

 Score =  385 bits (988), Expect = e-117
 Identities = 183/294 (62%), Positives = 224/294 (76%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            MVTR KTG+LKP+ F+  LEPTSVK AL+ P+W  AM++EY+AL+ N TWSL  LPP+R+
Sbjct: 960  MVTRGKTGSLKPKAFIAKLEPTSVKHALSDPNWSQAMQSEYKALMDNNTWSLVPLPPHRK 1019

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKW+FR+KENP+GTVNKYKARLV KG+ Q PG D+ ETFSPVIKP T RI+L+L +T
Sbjct: 1020 AIGCKWIFRIKENPDGTVNKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILTLAVT 1079

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            YKW +QQID+ NAF+NG LQEE+YM QP GF   ++ LVCKLH+SLYGLKQAPRAWYERL
Sbjct: 1080 YKWTVQQIDVNNAFLNGVLQEEVYMTQPVGFEASDRSLVCKLHKSLYGLKQAPRAWYERL 1139

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
              ALLQ GF  SKC  SL V+ +     Y L+YVDDILITGS P LI  +I KL   FAL
Sbjct: 1140 TQALLQLGFVASKCDPSLLVHHQQGACTYVLIYVDDILITGSAPHLIQDVIHKLNIQFAL 1199

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            K +G  +YFLGIEV ++ +G +LL Q+KY  DLL R NM  C P+ +PM+S  +
Sbjct: 1200 KQLGEVDYFLGIEVHHMPSGGLLLNQSKYIRDLLSRTNMDNCKPIGSPMVSTCR 1253



 Score =  110 bits (276), Expect = 5e-22
 Identities = 54/89 (60%), Positives = 63/89 (70%)
 Frame = -2

Query: 268  PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
            P V    +    +D + DP  YRS VGALQY TL RPDIAFSVNKVCQF+A PL++HW+A
Sbjct: 1247 PMVSTCRLSKFGTDAMTDPSLYRSTVGALQYATLTRPDIAFSVNKVCQFMAHPLETHWKA 1306

Query: 88   VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
            VKRILRYL GT   GLLL P+    PFS+
Sbjct: 1307 VKRILRYLKGTSSHGLLLHPSPTSPPFSL 1335


>gb|PNX66338.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 258

 Score =  353 bits (906), Expect = e-117
 Identities = 168/256 (65%), Positives = 199/256 (77%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            MVTRAKTGNLKP+ FL  +EPT++K AL  PHWL AM+AEY+AL  N TWSL  LPP+++
Sbjct: 1    MVTRAKTGNLKPKTFLASIEPTNIKNALADPHWLKAMQAEYKALQDNNTWSLVPLPPHKK 60

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKW+FRVKENP+G++NKYKARLV KG+ Q PG D+ ETFSPVIKP T RI+L+L +T
Sbjct: 61   AIGCKWIFRVKENPDGSINKYKARLVAKGFHQTPGFDFTETFSPVIKPVTIRIILTLAVT 120

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            YKW +QQIDI NAF+NG LQEE+YM QP GF N +K LVCKLH++LYGLKQAPRAWYERL
Sbjct: 121  YKWSVQQIDINNAFLNGLLQEEVYMTQPTGFENSDKTLVCKLHKALYGLKQAPRAWYERL 180

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
               LLQ GF  SKC  SL V+ +     Y L+YVDDILITGS P LI  LI KL   FAL
Sbjct: 181  TQTLLQMGFIKSKCDPSLLVHHQNGACTYVLIYVDDILITGSAPHLIKDLIQKLNIKFAL 240

Query: 396  KHMGTPEYFLGIEVKY 349
            K +G  +YFLG+EV +
Sbjct: 241  KQLGEVDYFLGLEVHH 256


>gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1438

 Score =  384 bits (986), Expect = e-117
 Identities = 183/294 (62%), Positives = 227/294 (77%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            MVTR KTGNLKP+ F+T LEPT+VK+AL+ P WL AM++E +AL  N TWSL  LPP+++
Sbjct: 914  MVTRGKTGNLKPKTFITTLEPTTVKSALSNPRWLQAMQSELKALTDNNTWSLVPLPPHKR 973

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKWVFRVKENP+GT+NKYKARLV KG+ Q PG D+ ETFSPV+KP T RI+L+L +T
Sbjct: 974  AIGCKWVFRVKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVVKPVTVRIILTLAVT 1033

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            YKW ++QIDI NAF+NG LQEE+YM QP GF + +K LVCKLH+SLYGLKQAPRAWYERL
Sbjct: 1034 YKWSVKQIDINNAFLNGLLQEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAWYERL 1093

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
               L+Q GF+ SKC  SL V+ +     Y L+YVDDILITGS  QLI  LI KL   FAL
Sbjct: 1094 TQTLVQMGFSASKCDPSLLVHHQQGACTYVLIYVDDILITGSSSQLIEDLIHKLNIQFAL 1153

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            K +G  +YFLGIEV ++S+G++LL Q+KY  DLL + NM  C P+ +PM+S  +
Sbjct: 1154 KQLGEIDYFLGIEVHHMSSGALLLNQSKYIKDLLVKTNMDNCKPIGSPMVSTCR 1207



 Score =  113 bits (282), Expect = 9e-23
 Identities = 56/89 (62%), Positives = 65/89 (73%)
 Frame = -2

Query: 268  PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
            P V    +    +D L+DP  YRS VGALQY TL RPDIAFSVNKVCQ++A PL+SHW+A
Sbjct: 1201 PMVSTCRLSKFGTDALSDPSLYRSTVGALQYATLTRPDIAFSVNKVCQYMAHPLESHWKA 1260

Query: 88   VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
            VKRILRYL GT   GLLL P+S   PFS+
Sbjct: 1261 VKRILRYLQGTISHGLLLSPSSSSPPFSL 1289


>gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  357 bits (916), Expect(2) = e-117
 Identities = 170/299 (56%), Positives = 226/299 (75%), Gaps = 5/299 (1%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRV----FLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELP 949
            M+TR+K G L+PR+     L+++EP +VK+ALT PHWL AM+AE  AL  N TW+L +LP
Sbjct: 869  MITRSKNGILQPRLNPTLLLSNVEPKTVKSALTDPHWLSAMQAELTALHDNHTWTLVDLP 928

Query: 948  PNRQTIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLS 769
            P R++IGCKWVFR+KENP+G++NKYKARLV KG+ Q PG D+ ETFSPV+KP T RI+LS
Sbjct: 929  PGRKSIGCKWVFRLKENPDGSINKYKARLVAKGFHQQPGVDFSETFSPVVKPVTIRIVLS 988

Query: 768  LVITYKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDN-KQLVCKLHRSLYGLKQAPRA 592
            L +T++W ++Q+DI NAF+NG L+E+IYM QPPGF+  N K LVCKLH+SLYGLKQAPRA
Sbjct: 989  LAVTFQWPLRQLDINNAFLNGMLEEDIYMSQPPGFIEPNSKHLVCKLHKSLYGLKQAPRA 1048

Query: 591  WYERLKAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQ 412
            W++RL + LL+ GF  SKC  SLF+++     +Y L+YVDDI++TG+   L+   I  L 
Sbjct: 1049 WFDRLTSVLLKLGFHKSKCDPSLFIFSTPSAIVYMLIYVDDIILTGNSSSLMQQFINHLH 1108

Query: 411  NTFALKHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
             TF+LK +GT +YFLGIEVK LSNG +LL+Q KY +DLL +  M     +STPM+   +
Sbjct: 1109 ATFSLKDLGTLDYFLGIEVKSLSNGRLLLSQHKYISDLLTKVKMEDSKGISTPMIGGQQ 1167



 Score = 94.7 bits (234), Expect(2) = e-117
 Identities = 43/75 (57%), Positives = 55/75 (73%)
 Frame = -2

Query: 226  LLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRAVKRILRYLSGTQHL 47
            L  DP  YRS+VGALQY T+ RP+IAFSVNKV QF+ +P++ HW+ VKRILRYL GT   
Sbjct: 1174 LFNDPTLYRSVVGALQYATITRPEIAFSVNKVSQFMCSPMEEHWKVVKRILRYLKGTLKH 1233

Query: 46   GLLLQPASQDNPFSV 2
            GL+  PA   + F++
Sbjct: 1234 GLVFTPARSSSSFNL 1248


>gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 537

 Score =  361 bits (927), Expect = e-116
 Identities = 175/298 (58%), Positives = 224/298 (75%), Gaps = 4/298 (1%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRV----FLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELP 949
            M TRAK G +KPR+     LTH+EP + K AL+ P W  AM+ EY AL+ NGTWSL  LP
Sbjct: 1    MTTRAKDGIVKPRLQPTLLLTHVEPKTTKQALSNPTWTAAMQTEYNALLHNGTWSLVPLP 60

Query: 948  PNRQTIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLS 769
            P+R  IGCKWVFRVKENPNGTV KYKA LV KG++Q  G DY ETFSPVIKP T R++L+
Sbjct: 61   PHRTAIGCKWVFRVKENPNGTVQKYKACLVAKGFNQQFGFDYHETFSPVIKPVTVRLILT 120

Query: 768  LVITYKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAW 589
            L +T+ W IQQ+D+ NAF+NG L+EE+YM QPPGF   +K LVCKLH+++YGLKQAPRAW
Sbjct: 121  LALTHHWPIQQLDVNNAFLNGTLEEEVYMTQPPGFEASDKCLVCKLHKAIYGLKQAPRAW 180

Query: 588  YERLKAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQN 409
            +E+LK+ LLQF F  SKC  SLFVY+ A   +Y LVYVDDI+IT +   ++H L+++L +
Sbjct: 181  FEKLKSTLLQFHFQASKCDPSLFVYSHANNVIYILVYVDDIIITSNNSSILHTLVSQLHS 240

Query: 408  TFALKHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
             F+LK +G  +YFLGIEVK  S+GS++LTQ+KY  DLL R +M    P+S+PM+ + K
Sbjct: 241  VFSLKDLGDLDYFLGIEVKTQSDGSLILTQSKYIRDLLNRTDMEALKPISSPMIPDSK 298



 Score = 88.6 bits (218), Expect = 5e-15
 Identities = 46/89 (51%), Positives = 57/89 (64%)
 Frame = -2

Query: 268 PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
           P +    +    S+   D   YRS+VGALQY T+ R +I+FSVNKVCQF++ PL  H  A
Sbjct: 292 PMIPDSKLSKAGSEDFLDASLYRSVVGALQYATITRLEISFSVNKVCQFMSYPLAHHCSA 351

Query: 88  VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
           VKRILRYL GT   GL LQPAS  +  S+
Sbjct: 352 VKRILRYLKGTTSWGLHLQPASSSSSLSI 380


>gb|PNX92906.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1196

 Score =  378 bits (971), Expect = e-116
 Identities = 180/294 (61%), Positives = 220/294 (74%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            MVTR KTGNLKP+V    +EPTSV+ AL  P WL AM++EY+AL+ N TWSL  LPP+++
Sbjct: 664  MVTRGKTGNLKPKVLTASIEPTSVRAALNDPQWLKAMQSEYKALMDNNTWSLVSLPPHKK 723

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKW+FRVKENP+GTVNKYKARLV KG+ Q PG D+ ETFSPVIKP T RI+L+L +T
Sbjct: 724  AIGCKWIFRVKENPDGTVNKYKARLVAKGFLQTPGFDFKETFSPVIKPTTIRIILTLAVT 783

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            YKW +QQID+ NAF+NG LQEE+YM QP GF   +K LVCKLH+SLYGLKQAPRAWYERL
Sbjct: 784  YKWAVQQIDVNNAFLNGLLQEEVYMSQPSGFEVADKSLVCKLHKSLYGLKQAPRAWYERL 843

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
               LLQ GF  SKC  SL ++ +     Y L+YVDDILITGS P LI  LI KL   F+L
Sbjct: 844  TQTLLQMGFVASKCDPSLLIHHQQGACTYVLIYVDDILITGSAPHLIQDLIHKLNIQFSL 903

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            K +G  +YFLGIEV ++ +G +LL Q+KY  DLL R  M  C  + +PM+S+ +
Sbjct: 904  KQLGEVDYFLGIEVHHMPSGGLLLNQSKYIKDLLSRTKMENCKAIGSPMVSSCR 957



 Score =  109 bits (272), Expect = 2e-21
 Identities = 51/89 (57%), Positives = 66/89 (74%)
 Frame = -2

Query: 268  PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
            P V +  +    +D ++DP  YRS VGALQY TL RPDI++SVNKVCQF+A PL++HW+A
Sbjct: 951  PMVSSCRLSKFGTDSMSDPSLYRSTVGALQYATLTRPDISYSVNKVCQFMANPLETHWKA 1010

Query: 88   VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
            VKRILRYL GT + GLL+ P+    PFS+
Sbjct: 1011 VKRILRYLKGTSNHGLLIHPSPSSPPFSL 1039


>gb|PNX93094.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1513

 Score =  382 bits (981), Expect = e-116
 Identities = 180/294 (61%), Positives = 223/294 (75%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            M+TR KTG+LKP+ F   LEP SV++AL  P WL AM+AEY+AL+ N TWSL  LPP+++
Sbjct: 979  MITRCKTGSLKPKTFTASLEPASVRSALKDPKWLQAMQAEYKALIDNNTWSLVPLPPHKK 1038

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKW+FRVKENP+G++NKYKARLV KG+ Q PG D+ ETFSPVIKP T R++L+L +T
Sbjct: 1039 AIGCKWIFRVKENPDGSINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRLILTLAVT 1098

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            YKW IQQIDI NAF+NG LQEE+YM QP GF   ++ LVCKLH+SLYGLKQAPRAWY+RL
Sbjct: 1099 YKWSIQQIDINNAFLNGLLQEEVYMSQPTGFEASDQSLVCKLHKSLYGLKQAPRAWYDRL 1158

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
               LLQ GF  SKC  SL ++ +     Y L+YVDDILITGS P LI  +I KL   FAL
Sbjct: 1159 TQELLQMGFVKSKCDPSLLIHHQHGACTYILIYVDDILITGSAPHLIKSVIQKLNTKFAL 1218

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            K +G  +YFLGIEV ++ +GS+LL Q+KY  DLL + NM  C P+ +PM+SN K
Sbjct: 1219 KQLGEVDYFLGIEVHHMPSGSLLLNQSKYVKDLLCKTNMDNCKPIGSPMVSNCK 1272



 Score =  109 bits (273), Expect = 1e-21
 Identities = 54/89 (60%), Positives = 63/89 (70%)
 Frame = -2

Query: 268  PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
            P V    +    +D + DP  YRS VGALQY TL RPDIAFSVNKVCQF+A PL++HW+A
Sbjct: 1266 PMVSNCKLSKFGTDAMTDPSLYRSTVGALQYATLTRPDIAFSVNKVCQFMAHPLETHWKA 1325

Query: 88   VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
            VKRILRYL GT   GLLL P+    PFS+
Sbjct: 1326 VKRILRYLKGTVTHGLLLHPSPSSPPFSL 1354


>gb|PNY18109.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1239

 Score =  377 bits (967), Expect = e-115
 Identities = 180/294 (61%), Positives = 227/294 (77%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            M+TR KTG+LKP+VFL  LEP SV++AL+ P W  AM+ EY+AL+ N TWSL  LPP+R+
Sbjct: 710  MITRGKTGSLKPKVFLAELEPKSVRSALSDPKWKQAMQDEYKALMDNKTWSLVPLPPHRK 769

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKW+FRVKENP+GT+NK+KARLV KG+ Q  G D+ ETFSPVIKP T RI+L+L +T
Sbjct: 770  AIGCKWIFRVKENPDGTINKFKARLVAKGFLQTAGFDFTETFSPVIKPITIRIILTLAVT 829

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            +KWQ+QQID+ NAF+NG LQEE+YM QP GF + +K LVCKLH+SLYGLKQAPRAWY+RL
Sbjct: 830  FKWQVQQIDVNNAFLNGVLQEEVYMAQPSGFESSDKSLVCKLHKSLYGLKQAPRAWYDRL 889

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
              ALLQ GF  SKC  SL V+ +     Y L+YVDDILI GS P LI+ LI KL  +FAL
Sbjct: 890  TQALLQLGFIKSKCDPSLLVHNQNGTCTYVLIYVDDILIIGSAPHLINDLINKLNMSFAL 949

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            K +G  +YFLGIEV +LS+G++LL Q+KY  DLL +A M    P+ +PM+S+ +
Sbjct: 950  KRLGQVDYFLGIEVHHLSSGALLLNQSKYVRDLLCKAKMEDSKPIGSPMVSSCR 1003



 Score =  115 bits (287), Expect = 2e-23
 Identities = 56/89 (62%), Positives = 66/89 (74%)
 Frame = -2

Query: 268  PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
            P V +  +    +D + DP  YRS+VGALQY TL RPDIAFSVNKVCQF+A PL+SHW+A
Sbjct: 997  PMVSSCRLSKYGTDTMTDPTLYRSVVGALQYATLTRPDIAFSVNKVCQFMAHPLESHWKA 1056

Query: 88   VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
            VKRILRYL GT   GLLL P+S   PFS+
Sbjct: 1057 VKRILRYLKGTLSHGLLLNPSSAGPPFSL 1085


>dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subterraneum]
          Length = 1442

 Score =  379 bits (972), Expect = e-115
 Identities = 183/294 (62%), Positives = 225/294 (76%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            M+TRAKTGNLKP+ +L+  EP +VK+AL+ P WL AM+ EY+AL+ N TWSL  LPP+R+
Sbjct: 910  MITRAKTGNLKPKAYLSLAEPKTVKSALSDPQWLAAMQLEYKALMDNNTWSLVPLPPHRR 969

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKWVFR+KENP+GTVNKYKARLV KG++Q PG D+ ETFSPVIKP T RI+L+L +T
Sbjct: 970  AIGCKWVFRIKENPDGTVNKYKARLVAKGFAQTPGFDFTETFSPVIKPITIRIILTLAVT 1029

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
             KW +QQID+ NAF+NG LQEE+YM QP GF N ++ LVCKLH+SLYGLKQAPRAWYE+L
Sbjct: 1030 NKWPVQQIDVNNAFLNGVLQEEVYMHQPAGFENADRSLVCKLHKSLYGLKQAPRAWYEKL 1089

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
               LL FGF  SKC  SL V++      Y L+YVDDILITGS P +I  LI KL   FAL
Sbjct: 1090 TQTLLTFGFVKSKCDPSLLVHSHNGAVTYVLIYVDDILITGSAPHVIQDLIHKLNVHFAL 1149

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            K +G  +YFLGIEV  LS G++LLTQTKY  DLL +A M   +P+ +PM+S  +
Sbjct: 1150 KQLGQLDYFLGIEVHSLSTGALLLTQTKYIRDLLCKAKMENSNPIGSPMVSTCR 1203



 Score =  112 bits (281), Expect = 1e-22
 Identities = 54/89 (60%), Positives = 64/89 (71%)
 Frame = -2

Query: 268  PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
            P V    +    +D+ +D   YRS+VGALQYVTL RPDIAFSVNK CQF+A PLDSHW+A
Sbjct: 1197 PMVSTCRLSKIGTDVFSDATLYRSVVGALQYVTLTRPDIAFSVNKACQFMARPLDSHWKA 1256

Query: 88   VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
            VKRILRYL GT H GL + P+    PFS+
Sbjct: 1257 VKRILRYLKGTLHYGLCISPSLTGPPFSL 1285


>gb|PNX93512.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1418

 Score =  378 bits (971), Expect = e-115
 Identities = 181/294 (61%), Positives = 222/294 (75%)
 Frame = -3

Query: 1116 MVTRAKTGNLKPRVFLTHLEPTSVKTALTIPHWLDAMKAEYQALVKNGTWSLTELPPNRQ 937
            M+TR KTG+LKP+ F   +EPT++K+AL  P WL AMK+EY+AL+ N TWSL  LPP+++
Sbjct: 899  MITRGKTGHLKPKTFTASIEPTTIKSALASPQWLQAMKSEYKALMDNNTWSLVPLPPHKK 958

Query: 936  TIGCKWVFRVKENPNGTVNKYKARLVVKGYSQLPGQDYGETFSPVIKPATFRILLSLVIT 757
             IGCKW+FRVKENP+G+VNKYKARLV KG+ Q PG D+ ETFSPVIKP T RI+L+L +T
Sbjct: 959  AIGCKWIFRVKENPDGSVNKYKARLVAKGFLQTPGFDFTETFSPVIKPVTVRIILTLAVT 1018

Query: 756  YKWQIQQIDITNAFINGHLQEEIYMQQPPGFVNDNKQLVCKLHRSLYGLKQAPRAWYERL 577
            Y+W +QQIDI NAF+NG LQEE+YM QP GF   +K LVCKLH+SLYGLKQAPRAWYERL
Sbjct: 1019 YRWSVQQIDINNAFLNGLLQEEVYMSQPAGFEASDKTLVCKLHKSLYGLKQAPRAWYERL 1078

Query: 576  KAALLQFGFTPSKCVHSLFVYTKACVQLYALVYVDDILITGSVPQLIHVLITKLQNTFAL 397
               LLQ GF  SKC  SL V+ +     Y LVYVDDILITGS  QL+  LI KL   FAL
Sbjct: 1079 TQTLLQMGFVKSKCDPSLLVHHQHGACTYVLVYVDDILITGSDSQLVKDLIHKLNIKFAL 1138

Query: 396  KHMGTPEYFLGIEVKYLSNGSMLLTQTKYTADLLERANMTGCSPMSTPMMSNMK 235
            K +G  +YFLGIEV +  +G +LL Q+KY  DLL + NM  C P+ +PM+S+ K
Sbjct: 1139 KQLGEVDYFLGIEVHHKPSGGLLLHQSKYVKDLLVKTNMENCKPIGSPMVSSCK 1192



 Score =  114 bits (285), Expect = 4e-23
 Identities = 54/89 (60%), Positives = 67/89 (75%)
 Frame = -2

Query: 268  PYVHAYDVQHEASDLLADPRQYRSIVGALQYVTLMRPDIAFSVNKVCQFLAAPLDSHWRA 89
            P V +  +    +D++ DP  YRS VGALQY TL RPDI++SVNKVCQF+A PL+SHW+A
Sbjct: 1186 PMVSSCKLSKFGTDVMTDPTLYRSTVGALQYATLTRPDISYSVNKVCQFMAHPLESHWKA 1245

Query: 88   VKRILRYLSGTQHLGLLLQPASQDNPFSV 2
            VKRILRYL GT + GLLLQP+    PFS+
Sbjct: 1246 VKRILRYLKGTLNYGLLLQPSPSSPPFSL 1274