BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00009031
         (1330 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU28547.1| hypothetical protein TSUD_268860 [Trifolium subt...   476   e-155
gb|PNX84823.1| retrovirus-related Pol polyprotein from transposo...   449   e-152
gb|PNX94008.1| retrovirus-related Pol polyprotein from transposo...   467   e-151
gb|PNY17451.1| retrovirus-related Pol polyprotein from transposo...   474   e-151
dbj|GAU20491.1| hypothetical protein TSUD_130490 [Trifolium subt...   461   e-148
dbj|GAU29493.1| hypothetical protein TSUD_360380 [Trifolium subt...   456   e-146
gb|PNY16454.1| flavonol sulfotransferase-like protein [Trifolium...   458   e-145
dbj|GAU40777.1| hypothetical protein TSUD_26570 [Trifolium subte...   430   e-136
dbj|GAU15801.1| hypothetical protein TSUD_236170 [Trifolium subt...   425   e-134
dbj|GAU20755.1| hypothetical protein TSUD_239490 [Trifolium subt...   417   e-133
gb|PNX84365.1| retrovirus-related Pol polyprotein from transposo...   400   e-132
dbj|GAU37804.1| hypothetical protein TSUD_276210, partial [Trifo...   402   e-131
dbj|GAU47119.1| hypothetical protein TSUD_98960 [Trifolium subte...   404   e-129
gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposo...   404   e-128
gb|PNY03100.1| retrovirus-related Pol polyprotein from transposo...   391   e-127
dbj|GAU37009.1| hypothetical protein TSUD_150450 [Trifolium subt...   406   e-127
gb|PNX94376.1| hypothetical protein L195_g017551, partial [Trifo...   399   e-127
gb|PNY16682.1| retrovirus-related Pol polyprotein from transposo...   405   e-126
gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposo...   402   e-126
gb|KYP67096.1| Retrovirus-related Pol polyprotein from transposo...   395   e-126

>dbj|GAU28547.1| hypothetical protein TSUD_268860 [Trifolium subterraneum]
          Length = 1059

 Score =  476 bits (1225), Expect = e-155
 Identities = 254/464 (54%), Positives = 321/464 (69%), Gaps = 22/464 (4%)
 Frame = +3

Query: 3    NKKKLDPRSRKSIYLGFKTGVKGHLLFDFHSREIFISRDVKFYENGFPYHSNVNAK---C 173
            N+KKLD RS+K +YLG K GVKGH+LFD  S+E+F+SRDV F+E+ FPY ++ N K   C
Sbjct: 550  NRKKLDSRSKKCVYLGSKLGVKGHILFDLKSKELFLSRDVVFFEHIFPYKTS-NEKSNDC 608

Query: 174  SPHFNSKSSDYYDSFPYNDDLHITGDQNHEANSDDTSPNKSLNT----PTPENKNSEPNS 341
             P   +    Y+D   +  DL      N  +N   ++P++  +T    P P   N+ P S
Sbjct: 609  VPTSQTHIQSYFDELIHPLDLD--SSPNITSNDHPSTPHQVSDTANITPDPTTPNTSPFS 666

Query: 342  ETSN-KTHNSDNTYDTHNQSTPEIDQPPNDDLRRSTRTRTQPTYLQDYHCSLLNNTIHKS 518
             +    +H++  T ++       I++PP   LR+STR    P YLQD+HC+LL NTI  S
Sbjct: 667  PSPVISSHDTTTTIESSPTIPHIINKPP---LRKSTRITHPPGYLQDFHCNLLANTIQSS 723

Query: 519  ESPIPSSTSQGNLYPISNVISYDRLSLAQKQYTPKLSTITEPNSYKEAMCDSNWRNAFKA 698
             +   +S S  + YP+S+ ISY  LS   + YT  LS+++EP SY++A+ D NW+ A K 
Sbjct: 724  SAD--TSNSSTSKYPLSSFISYQHLSPTHQHYTLNLSSLSEPTSYEKAISDENWKGAIKT 781

Query: 699  ELDALMKTNTWKLVPLSTNKKAIGCKWVFKLKLHADGS--------------IKRHKARL 836
            EL+ALMK NTW LVPL ++KKAIGCKWVFKLKLHADG+              I+RHKARL
Sbjct: 782  ELNALMKNNTWNLVPLPSHKKAIGCKWVFKLKLHADGTVERHEARLLHADGTIERHKARL 841

Query: 837  VAKGFTQTASLDYLETFSPVVKMTTVRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVYM 1016
            VAKGFTQT  LDY++TFSPVVKMTTVR+L+A+AA Q W L QLDVN AFLHGDL EEVYM
Sbjct: 842  VAKGFTQTEGLDYMDTFSPVVKMTTVRVLMAIAASQNWSLFQLDVNTAFLHGDLNEEVYM 901

Query: 1017 VPPPGLTVSDSRLVCKLERSLYGLKQASR*WNTKLTATLLETGYTQSKSDYSLYTNSTAT 1196
             PPPGL +    LVCKL+RSLYGLKQASR WNTKLT TL  +GY QSK+DYSL+T  T+T
Sbjct: 902  QPPPGLELPQPNLVCKLQRSLYGLKQASRQWNTKLTETLTSSGYIQSKADYSLFTKQTST 961

Query: 1197 GFTYILVYVDDLILAGTKLNEINRVKKLLDEKFSIKDLGELKYF 1328
            GFT ILVYVDDL+L GT ++EI+ +K LLD+KFSIKDLG LKYF
Sbjct: 962  GFTVILVYVDDLVLGGTDMSEIHNIKTLLDDKFSIKDLGNLKYF 1005


>gb|PNX84823.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 452

 Score =  449 bits (1154), Expect = e-152
 Identities = 234/433 (54%), Positives = 293/433 (67%), Gaps = 10/433 (2%)
 Frame = +3

Query: 3    NKKKLDPRSRKSIYLGFKTGVKGHLLFDFHSREIFISRDVKFYENGFPYHSNVNAKCSPH 182
            +++KLD RSRK I LGFK GVK H+LFD  + EIFISRDV F+EN FPY  +  +  S  
Sbjct: 27   HRQKLDSRSRKCISLGFKPGVKSHILFDLKNNEIFISRDVSFFENIFPY--SAKSSTSDV 84

Query: 183  FNSKSSDYYDSFPYNDDLHITGDQNHEANSDDTSPNKSLNTPTPENKNSEPNSETSNKTH 362
              S S+  Y+ + Y DDL  T    H ++   T  +  +   +P +     ++ T   TH
Sbjct: 85   SPSSSTHVYNQYTY-DDLDFTNPSTHTSHPQCTPSHLPIQNSSPLSHTPHTDTNTPLATH 143

Query: 363  NSD----------NTYDTHNQSTPEIDQPPNDDLRRSTRTRTQPTYLQDYHCSLLNNTIH 512
             SD          NT +T++ ++P +   P   LRRSTR    P YLQD+HCSLL  T +
Sbjct: 144  VSDSYIESASPSPNTPNTNSHNSPSLSPIP---LRRSTRPSNPPGYLQDFHCSLLT-TSN 199

Query: 513  KSESPIPSSTSQGNLYPISNVISYDRLSLAQKQYTPKLSTITEPNSYKEAMCDSNWRNAF 692
                P  S +S    YP+S+ ISY  LS + K +   +ST+TEP+SY+EAM D  W+NA 
Sbjct: 200  NDSIPSTSISSSDCKYPLSSFISYQNLSTSHKHFAFNISTLTEPSSYEEAMHDEQWKNAV 259

Query: 693  KAELDALMKTNTWKLVPLSTNKKAIGCKWVFKLKLHADGSIKRHKARLVAKGFTQTASLD 872
              EL AL+K NTW +  L  NKKA+GCKWVFKLKLHADGSI+RHKARLVAKGFTQT  +D
Sbjct: 260  NTELAALLKNNTWSMTTLPPNKKAVGCKWVFKLKLHADGSIERHKARLVAKGFTQTEGID 319

Query: 873  YLETFSPVVKMTTVRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVYMVPPPGLTVSDSR 1052
            Y+ETFSPVVKMTTVR  +A+AA Q W L QLDVN AFLHGDL EEVYM PPPGL + +  
Sbjct: 320  YMETFSPVVKMTTVRTFMAIAAAQHWPLFQLDVNTAFLHGDLNEEVYMQPPPGLALENPN 379

Query: 1053 LVCKLERSLYGLKQASR*WNTKLTATLLETGYTQSKSDYSLYTNSTATGFTYILVYVDDL 1232
            LVCKL+RSLYGLKQASR WN KLT TL+ +GY QSK+DYSL+T  + +GFT ILVYVDDL
Sbjct: 380  LVCKLQRSLYGLKQASRQWNAKLTETLISSGYKQSKADYSLFTKQSTSGFTAILVYVDDL 439

Query: 1233 ILAGTKLNEINRV 1271
            ++ GT +NEIN++
Sbjct: 440  VMGGTDINEINQL 452


>gb|PNX94008.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1063

 Score =  467 bits (1201), Expect = e-151
 Identities = 251/439 (57%), Positives = 308/439 (70%), Gaps = 4/439 (0%)
 Frame = +3

Query: 24   RSRKSIYLGFKTGVKGHLLFDFHSREIFISRDVKFYENGFPYHSNVNAKCSPHFNSKSSD 203
            RSRK I LGFK+GVKGH+LFD +++E+F+SRDV F+E+ FPY+++ +A  +      + D
Sbjct: 420  RSRKCISLGFKSGVKGHILFDLNNKELFLSRDVIFFEHLFPYNNDSSANSNSSIPKPTPD 479

Query: 204  --YYDS-FPYNDDLHITGDQNHEANSDDTSP-NKSLNTPTPENKNSEPNSETSNKTHNSD 371
              Y D  F Y+   + T   N ++ +   SP + S + P+P+     P   TS     S 
Sbjct: 480  PAYLDDLFHYDTSSNPTIQPNTQSTNTFPSPMSHSTSPPSPQ-----PIPSTSYTPSPSS 534

Query: 372  NTYDTHNQSTPEIDQPPNDDLRRSTRTRTQPTYLQDYHCSLLNNTIHKSESPIPSSTSQG 551
            N   T+N +TP     P   LRRSTR  T P YLQDYHC+LL   IH S S   S+ S  
Sbjct: 535  NNTTTNN-TTPS----PPIQLRRSTRPTTMPGYLQDYHCNLLTPAIHASHSSA-SNLSSS 588

Query: 552  NLYPISNVISYDRLSLAQKQYTPKLSTITEPNSYKEAMCDSNWRNAFKAELDALMKTNTW 731
            + YPIS+ ++Y  LS A   Y   LSTITEP SY+EA+ D NW NA KAEL A+M TNTW
Sbjct: 589  SKYPISSFMTYQNLSPAHTHYIMNLSTITEPTSYEEALKDENWTNAIKAELSAMMHTNTW 648

Query: 732  KLVPLSTNKKAIGCKWVFKLKLHADGSIKRHKARLVAKGFTQTASLDYLETFSPVVKMTT 911
             L  L  +K+AIGCKW+FKLKLHADG+++R+KARLVAKGFTQT  LDYLETFSPVVKMTT
Sbjct: 649  NLAHLPAHKRAIGCKWIFKLKLHADGTVERYKARLVAKGFTQTEGLDYLETFSPVVKMTT 708

Query: 912  VRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVYMVPPPGLTVSDSRLVCKLERSLYGLK 1091
            +RLL+A+AA Q W L QLDVN AFLHGDL EEVYM PPPGL +    LVCKL+R LYGLK
Sbjct: 709  IRLLMAIAASQNWPLFQLDVNTAFLHGDLNEEVYMKPPPGLDLPHPDLVCKLQRPLYGLK 768

Query: 1092 QASR*WNTKLTATLLETGYTQSKSDYSLYTNSTATGFTYILVYVDDLILAGTKLNEINRV 1271
            QASR WNTKLT TL+ +GY QSKSDYSL+T  +  GFT ILVYVDDL+L GT ++EI  +
Sbjct: 769  QASRQWNTKLTDTLISSGYIQSKSDYSLFTKQSHAGFTVILVYVDDLVLGGTDMDEITTL 828

Query: 1272 KKLLDEKFSIKDLGELKYF 1328
            K LL++KFSIKDLG LKYF
Sbjct: 829  KTLLNDKFSIKDLGVLKYF 847


>gb|PNY17451.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1425

 Score =  474 bits (1219), Expect = e-151
 Identities = 252/465 (54%), Positives = 315/465 (67%), Gaps = 23/465 (4%)
 Frame = +3

Query: 3    NKKKLDPRSRKSIYLGFKTGVKGHLLFDFHSREIFISRDVKFYENGFPYHSNVNAKCSPH 182
            N+ KLD RSRK + LG KTGVKGH+LFD  SRE+FISRDV F+E+ FP+++    K    
Sbjct: 675  NRHKLDSRSRKCVSLGLKTGVKGHILFDLQSREVFISRDVVFFEHIFPFYT----KNQHQ 730

Query: 183  FNSKSSDYYDSFPYND-DLHITGDQNHEANSDDT---------SPNKSLNTPTPENKNSE 332
             +  +S       Y+D D+  T    H ++S            SP    +T +P++ +S 
Sbjct: 731  IDQTNSATQSPILYDDLDMLFTNHSTHHSSSPSLPLLQTATPHSPTSIPSTHSPDDHSSP 790

Query: 333  PNS------------ETSNKTHNSDNT-YDTHNQSTPEIDQPPNDDLRRSTRTRTQPTYL 473
            P+             ET      S NT   T + S P I  P  + +R+S R +  P+YL
Sbjct: 791  PSPTHDHHSPCDPVIETDVMIPTSTNTPLTTSSNSLPIIAPPSINPVRKSDRVKHPPSYL 850

Query: 474  QDYHCSLLNNTIHKSESPIPSSTSQGNLYPISNVISYDRLSLAQKQYTPKLSTITEPNSY 653
            QDYH  +L N  H +      S+SQ   +PIS+ ISYD LS A K Y   +ST+TEP+SY
Sbjct: 851  QDYHTKILGNISHSASDSTHPSSSQCK-FPISSFISYDHLSPAHKHYALNISTLTEPSSY 909

Query: 654  KEAMCDSNWRNAFKAELDALMKTNTWKLVPLSTNKKAIGCKWVFKLKLHADGSIKRHKAR 833
            +EAMCD NW++A   EL AL+K NTW +V L  +KKAIGCKWVFKLKLHADG+++RHKAR
Sbjct: 910  EEAMCDENWKSAVNVELTALLKNNTWDMVKLPPHKKAIGCKWVFKLKLHADGTVERHKAR 969

Query: 834  LVAKGFTQTASLDYLETFSPVVKMTTVRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVY 1013
            LVAKGFTQT  +DY++TFSPVVKMTTVR  +A+AA Q W L QLDVN AFLHGDL EEVY
Sbjct: 970  LVAKGFTQTEGIDYIDTFSPVVKMTTVRTFMAIAASQNWPLFQLDVNTAFLHGDLNEEVY 1029

Query: 1014 MVPPPGLTVSDSRLVCKLERSLYGLKQASR*WNTKLTATLLETGYTQSKSDYSLYTNSTA 1193
            M PPPGL ++   LVCKL+RSLYGLKQASR WN KLT TLL +GY QSK+DYSL+T +T+
Sbjct: 1030 MKPPPGLPLAHPDLVCKLQRSLYGLKQASRQWNVKLTETLLSSGYIQSKADYSLFTKNTS 1089

Query: 1194 TGFTYILVYVDDLILAGTKLNEINRVKKLLDEKFSIKDLGELKYF 1328
            TGFT ILVYVDDL+L GT ++EI+++K LLD KFSIKDLG LKYF
Sbjct: 1090 TGFTAILVYVDDLVLGGTDIDEIHQLKALLDTKFSIKDLGSLKYF 1134


>dbj|GAU20491.1| hypothetical protein TSUD_130490 [Trifolium subterraneum]
          Length = 1127

 Score =  461 bits (1185), Expect = e-148
 Identities = 247/444 (55%), Positives = 297/444 (66%), Gaps = 2/444 (0%)
 Frame = +3

Query: 3    NKKKLDPRSRKSIYLGFKTGVKGHLLFDFHSREIFISRDVKFYENGFPYHSNVN-AKCSP 179
            NK KLD RSRK I LGFK GVKGH+LFD  ++EIF+SRDV F+E+ FPY S+++    SP
Sbjct: 447  NKNKLDSRSRKCILLGFKNGVKGHILFDLKNKEIFLSRDVTFFEHIFPYASSLSHTNASP 506

Query: 180  HFNSKSSDY-YDSFPYNDDLHITGDQNHEANSDDTSPNKSLNTPTPENKNSEPNSETSNK 356
               +  S Y YD   Y  DL  +    H  +      + +L     +  N+   S +S+ 
Sbjct: 507  SHCTHPSQYAYDDLDY--DLSHSHTPTHHLSDHSHPTHSTLPLDNTQPSNNHTTSPSSST 564

Query: 357  THNSDNTYDTHNQSTPEIDQPPNDDLRRSTRTRTQPTYLQDYHCSLLNNTIHKSESPIPS 536
               SD+   + N S P I QP    +R+S R    P YLQDYHC+LL    H    P  +
Sbjct: 565  DTISDHIIPSKNPS-PTIPQPIVP-IRKSNRASHPPGYLQDYHCNLLTTPSHDLVPPTST 622

Query: 537  STSQGNLYPISNVISYDRLSLAQKQYTPKLSTITEPNSYKEAMCDSNWRNAFKAELDALM 716
            S+SQ   YP+S+ +SY  LS     +   LST+TEP SY+EAM D  W+NA  +E+ ALM
Sbjct: 623  SSSQCK-YPLSSFLSYKDLSSTHTHFVCNLSTLTEPTSYEEAMHDEQWKNAISSEMSALM 681

Query: 717  KTNTWKLVPLSTNKKAIGCKWVFKLKLHADGSIKRHKARLVAKGFTQTASLDYLETFSPV 896
            K NTW +  L ++KKAIGCKWVFKLKLH DGSI+RHKARLVAKGFTQT  LDY +TFS V
Sbjct: 682  KNNTWSMTTLPSHKKAIGCKWVFKLKLHVDGSIERHKARLVAKGFTQTEGLDYTDTFSLV 741

Query: 897  VKMTTVRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVYMVPPPGLTVSDSRLVCKLERS 1076
            VKMTTVR  +A+AA Q W L QLDVN AFLHGDL EEVYM PPPGL +    LVCKL+RS
Sbjct: 742  VKMTTVRTFMAIAAAQQWPLFQLDVNTAFLHGDLNEEVYMKPPPGLVLDHPDLVCKLQRS 801

Query: 1077 LYGLKQASR*WNTKLTATLLETGYTQSKSDYSLYTNSTATGFTYILVYVDDLILAGTKLN 1256
            LYGLKQASR WN KLT TL  +GY QSK+DYSL+T  + TGFT ILVYVDDL+L GT + 
Sbjct: 802  LYGLKQASRQWNAKLTETLTSSGYVQSKADYSLFTKQSTTGFTAILVYVDDLVLGGTDII 861

Query: 1257 EINRVKKLLDEKFSIKDLGELKYF 1328
            EIN +K LLD  FSIKDLG LKYF
Sbjct: 862  EINHIKSLLDATFSIKDLGHLKYF 885


>dbj|GAU29493.1| hypothetical protein TSUD_360380 [Trifolium subterraneum]
          Length = 1200

 Score =  456 bits (1174), Expect = e-146
 Identities = 255/458 (55%), Positives = 303/458 (66%), Gaps = 18/458 (3%)
 Frame = +3

Query: 3    NKKKLDPRSRKSIYLGFKTGVKGHLLFDFHSREIFISRDVKFYENGFPYHSNVNAKCS-- 176
            N+ KLD RSRK I LG K GVKGH+LFD  S+EIF+SRDV F+E+ FPY  N  +K S  
Sbjct: 476  NRLKLDSRSRKCILLGLKPGVKGHILFDIKSKEIFLSRDVIFFEHIFPYQHNPLSKSSSS 535

Query: 177  -PHFNSKSSDYYDSFPYNDDLHITGD----QNHEANSDDTSPNKSLN------TPTPENK 323
             PH     +   D F Y    H T        H +++    PN   +      TP P   
Sbjct: 536  TPHHVPDPAYLDDLFQYRSS-HTTSSLPPPSLHPSSTSPLMPNHISDSYITPYTPPPPIN 594

Query: 324  NSE-----PNSETSNKTHNSDNTYDTHNQSTPEIDQPPNDDLRRSTRTRTQPTYLQDYHC 488
            + +     PN+ T      S +T    + + P     P   LR+STR    P YLQDYHC
Sbjct: 595  DLQTTPIHPNTFTDKPP--SSSTLSDKSVTLPLASTSPIP-LRKSTRLTNPPPYLQDYHC 651

Query: 489  SLLNNTIHKSESPIPSSTSQGNLYPISNVISYDRLSLAQKQYTPKLSTITEPNSYKEAMC 668
            +LL +TIH S S     TS  + YP+S  ++Y  LSLA   +   LSTI+EP SY+EA+ 
Sbjct: 652  NLLTSTIHDSPSSA-DITSSSSKYPLSAFLTYQHLSLAHTHFIMNLSTISEPTSYEEALK 710

Query: 669  DSNWRNAFKAELDALMKTNTWKLVPLSTNKKAIGCKWVFKLKLHADGSIKRHKARLVAKG 848
            + NW +A KAEL ALM TNTW L PL  +KKAIGCKWVFKLKLHADGS++R+KARLVAKG
Sbjct: 711  NENWTSAIKAELSALMNTNTWILAPLPAHKKAIGCKWVFKLKLHADGSVERYKARLVAKG 770

Query: 849  FTQTASLDYLETFSPVVKMTTVRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVYMVPPP 1028
            FTQT  LDYL+TFSPVVKMTT+R+L+ VAA Q W L QLDVN AFLHGDL EEVYM PPP
Sbjct: 771  FTQTEGLDYLDTFSPVVKMTTIRVLMVVAASQNWPLYQLDVNTAFLHGDLNEEVYMKPPP 830

Query: 1029 GLTVSDSRLVCKLERSLYGLKQASR*WNTKLTATLLETGYTQSKSDYSLYTNSTATGFTY 1208
            GL +    LVCKL+RSLYGLKQASR WNTKLT TL+ +GYTQ KSDYSL+T  + TGFT 
Sbjct: 831  GLDLPQPDLVCKLQRSLYGLKQASRQWNTKLTETLIASGYTQCKSDYSLFTKLSTTGFTV 890

Query: 1209 ILVYVDDLILAGTKLNEINRVKKLLDEKFSIKDLGELK 1322
            ILVYVDDL+L GT  +EI  VK LL+ KFSIKDLG LK
Sbjct: 891  ILVYVDDLVLGGTDPHEITTVKTLLNNKFSIKDLGILK 928


>gb|PNY16454.1| flavonol sulfotransferase-like protein [Trifolium pratense]
          Length = 1475

 Score =  458 bits (1179), Expect = e-145
 Identities = 250/471 (53%), Positives = 313/471 (66%), Gaps = 29/471 (6%)
 Frame = +3

Query: 3    NKKKLDPRSRKSIYLGFKTGVKGHLLFDFHSREIFISRDVKFYENGFPYHS-NVNAKCSP 179
            ++KKLD RSRK + LGFK GVKGH+L D  SRE+F+SRDV F+E+ FP+   + +     
Sbjct: 715  HRKKLDSRSRKCLLLGFKFGVKGHILLDLKSREVFVSRDVVFFEHIFPFQQQSQDVAVKS 774

Query: 180  HFNSKSSDYYDSFPYNDDLHITGDQNHEANSDDTSPNKSLNTPTPENK------------ 323
            H +   S  YD  P+ D  H        ++ +  SPN  +++P P N             
Sbjct: 775  HLSHSQSPLYDD-PFIDCPH--------SSPESPSPNDPISSPPPSNSLPHDIHNSIPNQ 825

Query: 324  ----NSEPNSET----SNKTHNSDN------TYDTHNQS-TPEIDQPPNDDLRRSTRTRT 458
                NS P++ T    S   H++DN      +Y +H+ + +P +  PP    R+S R   
Sbjct: 826  SPILNSPPHASTLHTPSTNNHDTDNPTVSIPSYVSHHPTPSPAMPPPPT---RKSNRITH 882

Query: 459  QPTYLQD-YHCSLLNNTIHKSESPIPSSTSQGNLYPISNVISYDRLSLAQKQYTPKLSTI 635
             P YL + Y+C   N  IH S    PSS+S+   YP+S+ ISY  LS A   Y   +STI
Sbjct: 883  PPPYLTEHYYC---NAAIHDSTKDTPSSSSKCK-YPLSSYISYQHLSSAHHHYLSNISTI 938

Query: 636  TEPNSYKEAMCDSNWRNAFKAELDALMKTNTWKLVPLSTNKKAIGCKWVFKLKLHADGSI 815
            +EP  Y++A+CD NW+ A  AEL AL K NTWKLVPL  +K AIGCKWVFKLKLHA+G+I
Sbjct: 939  SEPTCYEKAVCDPNWKAAINAELSALDKYNTWKLVPLPKHKHAIGCKWVFKLKLHANGTI 998

Query: 816  KRHKARLVAKGFTQTASLDYLETFSPVVKMTTVRLLLAVAAIQGWHLCQLDVNIAFLHGD 995
            +R+KARLVAKG+TQT  +DY++TFSPVVKMTT+R+ LA+AAIQ W L QLDVN AFLHGD
Sbjct: 999  ERYKARLVAKGYTQTEGIDYMDTFSPVVKMTTIRMFLAIAAIQNWPLYQLDVNTAFLHGD 1058

Query: 996  LQEEVYMVPPPGLTVSDSRLVCKLERSLYGLKQASR*WNTKLTATLLETGYTQSKSDYSL 1175
            L EEVYM PPPGL +    LVCKL+RSLYGLKQASR WNTKLT TLL +GYTQSKSDYSL
Sbjct: 1059 LDEEVYMKPPPGLDLPSPNLVCKLQRSLYGLKQASRQWNTKLTQTLLSSGYTQSKSDYSL 1118

Query: 1176 YTNSTATGFTYILVYVDDLILAGTKLNEINRVKKLLDEKFSIKDLGELKYF 1328
            +T   ++GFT ILVYVDDL+L GT   EI ++K LLD KFSIKDLG LKYF
Sbjct: 1119 FTKQASSGFTVILVYVDDLVLGGTDDKEIQKIKALLDRKFSIKDLGTLKYF 1169


>dbj|GAU40777.1| hypothetical protein TSUD_26570 [Trifolium subterraneum]
          Length = 1147

 Score =  430 bits (1105), Expect = e-136
 Identities = 235/451 (52%), Positives = 290/451 (64%), Gaps = 9/451 (1%)
 Frame = +3

Query: 3    NKKKLDPRSRKSIYLGFKTGVKGHLLFDFHSREIFISRDVKFYENGFPYHSNVNAKCSPH 182
            N+ KLD RSR+ I LGFK G+KGH+LFD  S+E+FISRDV F+EN FPY    +    P 
Sbjct: 436  NRHKLDSRSRRCISLGFKPGMKGHILFDLKSKELFISRDVVFFENVFPYCDKKHNINEPS 495

Query: 183  FNSKSSDYYDSFPY-----NDDLHITGDQN-HEANSDDTSPNKSLNTPTPENKNSEPNSE 344
             +  +SD YD   +         H T  +N H   +D+   N    TP P + + + N  
Sbjct: 496  SSRVTSDSYDDLTFLHHSHTPPHHTTSSKNQHITLTDNPQTNHPPYTPNPPSTSIQTNHP 555

Query: 345  TSNKTHNSDNTYDTHNQSTPEIDQP---PNDDLRRSTRTRTQPTYLQDYHCSLLNNTIHK 515
            T     +  +  D+H  +  +I QP    N  +R+S R    P YLQDYHC+LL N +H 
Sbjct: 556  TIT---SPPSNLDSHQPN--QIPQPISNTNHHIRKSLRQSKPPGYLQDYHCNLLTNLLHD 610

Query: 516  SESPIPSSTSQGNLYPISNVISYDRLSLAQKQYTPKLSTITEPNSYKEAMCDSNWRNAFK 695
            S +    STSQ   +P+S+ ISYD +S A K +   LST+TEP SY+EAM D +W+NA  
Sbjct: 611  SSTDTLQSTSQCK-FPLSDFISYDHVSNAHKHFALNLSTLTEPTSYEEAMNDEHWKNAIN 669

Query: 696  AELDALMKTNTWKLVPLSTNKKAIGCKWVFKLKLHADGSIKRHKARLVAKGFTQTASLDY 875
            AEL AL+K  TW +  L ++KKA+GCKWVFKLKLHADGSI+RHKARLVAKGFTQT  +DY
Sbjct: 670  AELTALVKNKTWTMTKLPSHKKAVGCKWVFKLKLHADGSIERHKARLVAKGFTQTEGIDY 729

Query: 876  LETFSPVVKMTTVRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVYMVPPPGLTVSDSRL 1055
             +  SPVVKMTTVR  +A+AA Q W L QLDVN AFLHGDL E                 
Sbjct: 730  TDPLSPVVKMTTVRTFMAIAAAQSWPLFQLDVNTAFLHGDLNE----------------- 772

Query: 1056 VCKLERSLYGLKQASR*WNTKLTATLLETGYTQSKSDYSLYTNSTATGFTYILVYVDDLI 1235
                ERSLYGLKQASR WN KLT TL+ +GY QSK+DYSL+T  T TGFT ILVYVDDL+
Sbjct: 773  ----ERSLYGLKQASRQWNAKLTETLIASGYCQSKADYSLFTKKTHTGFTAILVYVDDLV 828

Query: 1236 LAGTKLNEINRVKKLLDEKFSIKDLGELKYF 1328
            + GT +NEIN +K LLD+KFSIKDL  LKYF
Sbjct: 829  MGGTDINEINSLKALLDKKFSIKDLSVLKYF 859


>dbj|GAU15801.1| hypothetical protein TSUD_236170 [Trifolium subterraneum]
          Length = 1263

 Score =  425 bits (1093), Expect = e-134
 Identities = 231/450 (51%), Positives = 290/450 (64%), Gaps = 8/450 (1%)
 Frame = +3

Query: 3    NKKKLDPRSRKSIYLGFKTGVKGHLLFDFHSREIFISRDVKFYENGFPYHSNVNAKCSPH 182
            ++KKLD RSRK I LGF+TG+KGH+LFD  S+EIF+SRDV F+E+ FPYHS+ N    P 
Sbjct: 618  HRKKLDSRSRKCISLGFRTGIKGHILFDLKSKEIFLSRDVVFFEHIFPYHSS-NITEVPI 676

Query: 183  FNSKSSDYYDSFPYNDDLHITGDQNHEANSDDTSPNKSLNTPTPENKNSEPNSETSNKTH 362
             N+  +  +    Y+D L+        + S+    N  +  P+    N   +++ S+ +H
Sbjct: 677  SNASHNQTF----YDDLLNTQSYSRPISQSNHPPTNSPIPIPSSSIPNCSSHTDISSTSH 732

Query: 363  N--SDNTYDTHNQSTPEIDQ------PPNDDLRRSTRTRTQPTYLQDYHCSLLNNTIHKS 518
            N  S  T+ T   S P          P    LR+STR    P YL++YHC+ + + +  S
Sbjct: 733  NHISTATHPTIITSHPSHSSQSHNSIPSIHPLRKSTRISKPPPYLKNYHCNHITSIVPNS 792

Query: 519  ESPIPSSTSQGNLYPISNVISYDRLSLAQKQYTPKLSTITEPNSYKEAMCDSNWRNAFKA 698
                  S+S    YP+S+ +SY+ LS A K Y   +STI EPN+Y+EAMCD NWRNA  A
Sbjct: 793  SETTHQSSSNCK-YPLSSFVSYNNLSSAHKHYALNISTINEPNTYEEAMCDVNWRNAINA 851

Query: 699  ELDALMKTNTWKLVPLSTNKKAIGCKWVFKLKLHADGSIKRHKARLVAKGFTQTASLDYL 878
            EL ALMK NTW LV L T+KKAIGCKWVFKLKLHADGSI+RHKARLVAKGFTQT  +DY+
Sbjct: 852  ELSALMKNNTWNLVQLPTHKKAIGCKWVFKLKLHADGSIERHKARLVAKGFTQTEGIDYM 911

Query: 879  ETFSPVVKMTTVRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVYMVPPPGLTVSDSRLV 1058
            +TF+                          VN AFLHGDL EEVYM  PPGL +    LV
Sbjct: 912  DTFN--------------------------VNTAFLHGDLNEEVYMQAPPGLALPHPNLV 945

Query: 1059 CKLERSLYGLKQASR*WNTKLTATLLETGYTQSKSDYSLYTNSTATGFTYILVYVDDLIL 1238
            CKL+RSLYGLKQASR WN KLT TL+ +G+TQSK+DYSL+T  T  GFT ILVYVDDL+L
Sbjct: 946  CKLQRSLYGLKQASRQWNAKLTETLIASGFTQSKADYSLFTKKTCQGFTAILVYVDDLVL 1005

Query: 1239 AGTKLNEINRVKKLLDEKFSIKDLGELKYF 1328
             GT + EI+++K LLD+KFSIKDLG LKYF
Sbjct: 1006 GGTDMTEIDQLKTLLDQKFSIKDLGSLKYF 1035


>dbj|GAU20755.1| hypothetical protein TSUD_239490 [Trifolium subterraneum]
          Length = 993

 Score =  417 bits (1072), Expect = e-133
 Identities = 231/429 (53%), Positives = 284/429 (66%), Gaps = 17/429 (3%)
 Frame = +3

Query: 3    NKKKLDPRSRKSIYLGFKTGVKGHLLFDFHSREIFISRDVKFYENGFPY-HSNVNAKCSP 179
            N+ KLD RSRK + LGFKTGVKGH+LFD  S+EIFISRDV F+E+ FP+ +S+ N     
Sbjct: 399  NRHKLDSRSRKCLTLGFKTGVKGHILFDLQSKEIFISRDVVFFEHIFPFSNSSKNVTNQT 458

Query: 180  HFNSKSSDYYDS----FPYNDDLHITGDQNHEANSD------DTSPNKSLN------TPT 311
               ++S+  YD     FP   +   +   N   +S       DTS + ++N      TPT
Sbjct: 459  KSTTQSTILYDDLEMCFPSTSNSSHSSQTNPSTSSQPNHSSTDTSDHTNMNDSLRSLTPT 518

Query: 312  PENKNSEPNSETSNKTHNSDNTYDTHNQSTPEIDQPPNDDLRRSTRTRTQPTYLQDYHCS 491
             +N N  P     N T  +  T        P I  P    LR+S R    PTYLQDYH +
Sbjct: 519  SDNANHLPFHPPMNLTLPTSITSTNSTIPPPPITNP----LRKSNRVTHPPTYLQDYHTT 574

Query: 492  LLNNTIHKSESPIPSSTSQGNLYPISNVISYDRLSLAQKQYTPKLSTITEPNSYKEAMCD 671
            L + T H + +    S+SQ   +P+S+ ISY+ LS A K Y   LST+TEP +Y+EAMCD
Sbjct: 575  LAS-TSHSALTATHPSSSQYK-FPLSSSISYNHLSPAHKHYICNLSTLTEPPTYEEAMCD 632

Query: 672  SNWRNAFKAELDALMKTNTWKLVPLSTNKKAIGCKWVFKLKLHADGSIKRHKARLVAKGF 851
             +W+N    EL AL+K  TW LV L  +KKAIGCKWVFKLKLHADG+I+RHKARLVAKGF
Sbjct: 633  EHWKNTVNVELSALLKNKTWDLVKLPLHKKAIGCKWVFKLKLHADGTIERHKARLVAKGF 692

Query: 852  TQTASLDYLETFSPVVKMTTVRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVYMVPPPG 1031
            TQT  +DY +TFSPVVKMTTVR+ +A+AA Q W L QLDVN AFLHGDL EEVYM P PG
Sbjct: 693  TQTEGIDYTDTFSPVVKMTTVRMFMAIAASQHWPLFQLDVNTAFLHGDLNEEVYMKPLPG 752

Query: 1032 LTVSDSRLVCKLERSLYGLKQASR*WNTKLTATLLETGYTQSKSDYSLYTNSTATGFTYI 1211
            L +    LVCKL+RSLYGLKQASR WN KLT TL+ +GY+QSK+DYSL+T  T+ GFT I
Sbjct: 753  LPLPHPDLVCKLQRSLYGLKQASRQWNAKLTETLISSGYSQSKADYSLFTKRTSIGFTAI 812

Query: 1212 LVYVDDLIL 1238
            LVYVDDL+L
Sbjct: 813  LVYVDDLVL 821


>gb|PNX84365.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 562

 Score =  400 bits (1029), Expect = e-132
 Identities = 198/311 (63%), Positives = 238/311 (76%)
 Frame = +3

Query: 396  STPEIDQPPNDDLRRSTRTRTQPTYLQDYHCSLLNNTIHKSESPIPSSTSQGNLYPISNV 575
            ++P I  P  + +R+S R +  P+YLQDYH  +L N  H +      S+SQ   +PIS+ 
Sbjct: 4    NSPTISPPLINPIRKSDRVKHPPSYLQDYHTKILGNISHSAPDATSPSSSQCK-FPISSF 62

Query: 576  ISYDRLSLAQKQYTPKLSTITEPNSYKEAMCDSNWRNAFKAELDALMKTNTWKLVPLSTN 755
            ISY+ LS A K Y   LST+TEP+SY+EAMCD NW +A   EL AL+K  TW LV L  +
Sbjct: 63   ISYNHLSSAHKHYALNLSTLTEPSSYEEAMCDKNWESAVNVELAALLKNKTWDLVKLPPH 122

Query: 756  KKAIGCKWVFKLKLHADGSIKRHKARLVAKGFTQTASLDYLETFSPVVKMTTVRLLLAVA 935
            KKAIGCKWVFKLKLHADG+++R+KARLVAKGFTQT  +DY +TFSPVVKMTTVR  LA+A
Sbjct: 123  KKAIGCKWVFKLKLHADGTVERYKARLVAKGFTQTEGIDYTDTFSPVVKMTTVRTFLAIA 182

Query: 936  AIQGWHLCQLDVNIAFLHGDLQEEVYMVPPPGLTVSDSRLVCKLERSLYGLKQASR*WNT 1115
            A Q W L QLDVN  FLHGDL EEVYM PPPGL+++   LVCKL+RSLYGLKQASR WN 
Sbjct: 183  ASQNWPLFQLDVNTTFLHGDLDEEVYMKPPPGLSLAQPDLVCKLQRSLYGLKQASRQWNA 242

Query: 1116 KLTATLLETGYTQSKSDYSLYTNSTATGFTYILVYVDDLILAGTKLNEINRVKKLLDEKF 1295
            KLT TLL +GY QSK+DYSL+T +T+TGFT ILVYVDDL+L GT +NEI+++K LLD KF
Sbjct: 243  KLTETLLSSGYIQSKADYSLFTKNTSTGFTAILVYVDDLVLGGTDINEIHQLKALLDNKF 302

Query: 1296 SIKDLGELKYF 1328
            SIKDLG LKYF
Sbjct: 303  SIKDLGSLKYF 313


>dbj|GAU37804.1| hypothetical protein TSUD_276210, partial [Trifolium subterraneum]
          Length = 633

 Score =  402 bits (1033), Expect = e-131
 Identities = 216/377 (57%), Positives = 264/377 (70%), Gaps = 3/377 (0%)
 Frame = +3

Query: 207  YDSFPYNDDLHITGDQNHEANSDDTSPNKSLNTPTPENKNSEPNSETSNKTHNSDNTYDT 386
            Y + P + + H     NH  N D  S + S +T +     + P   TS+ + N  NT   
Sbjct: 37   YQASPSHSNHHSPYIPNH--NFDHLSQSHSSSTTS-----NYPTQLTSSAS-NPSNTEPV 88

Query: 387  HNQSTPEIDQPPND--DLRRSTRTRTQPTYLQDYHCSLLNNTIHKSESPI-PSSTSQGNL 557
            +  S+  +   P D   LR+STR    PTYLQDY+C+ L+NTIH S   + PSS+ +   
Sbjct: 89   NPPSSTTLTNKPIDYVPLRQSTRNCHPPTYLQDYYCNHLSNTIHDSSGNMEPSSSCK--- 145

Query: 558  YPISNVISYDRLSLAQKQYTPKLSTITEPNSYKEAMCDSNWRNAFKAELDALMKTNTWKL 737
            YPIS+ ISY  +S A K Y   +STI+EP  Y++A+CD NWR A +AEL AL K NTWKL
Sbjct: 146  YPISSFISYQNISSAHKHYLLNISTISEPTCYEKAICDENWRTAIQAELTALEKNNTWKL 205

Query: 738  VPLSTNKKAIGCKWVFKLKLHADGSIKRHKARLVAKGFTQTASLDYLETFSPVVKMTTVR 917
            V L  +K +IGCKWVFKLKLHA G+I+R+KARLVAKG+TQT  +DYL+TFSPVVKMTT+R
Sbjct: 206  VSLPPHKHSIGCKWVFKLKLHASGTIERYKARLVAKGYTQTEGIDYLDTFSPVVKMTTIR 265

Query: 918  LLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVYMVPPPGLTVSDSRLVCKLERSLYGLKQA 1097
            +LLA+AA + W L QLDVN AFLHGDL EEVYM PPPGL +S+  LVCKL+RSLYGLKQA
Sbjct: 266  MLLAIAASENWPLYQLDVNTAFLHGDLNEEVYMQPPPGLALSNPNLVCKLQRSLYGLKQA 325

Query: 1098 SR*WNTKLTATLLETGYTQSKSDYSLYTNSTATGFTYILVYVDDLILAGTKLNEINRVKK 1277
            S+ WNTKLT TL  +GY QSKSDYSL+T   +TGFT ILV VDDL+L GT   EI  +K 
Sbjct: 326  SKQWNTKLTETLTSSGYVQSKSDYSLFTKQASTGFTVILVCVDDLVLGGTDSTEIQNIKA 385

Query: 1278 LLDEKFSIKDLGELKYF 1328
            LLD KFSIKDLG LKYF
Sbjct: 386  LLDAKFSIKDLGSLKYF 402


>dbj|GAU47119.1| hypothetical protein TSUD_98960 [Trifolium subterraneum]
          Length = 917

 Score =  404 bits (1039), Expect = e-129
 Identities = 211/392 (53%), Positives = 267/392 (68%), Gaps = 9/392 (2%)
 Frame = +3

Query: 180  HFNSKSSDYYDSFPYNDDLHITGDQNHE-ANSDDTSPNKSLNTPTPENKNSEPNSETSNK 356
            +F   ++ Y  +F   DDL  T   +H  ++S+    N  ++ P+    N   +++  + 
Sbjct: 337  NFPISNASYNQTF--YDDLLNTQPYSHPISHSNHPQTNSPIHVPSSSIPNYPSHTDIPST 394

Query: 357  THNSDNT-------YDTHNQSTPEIDQPPN-DDLRRSTRTRTQPTYLQDYHCSLLNNTIH 512
            +HN  +T        + H+ S    +  P+    R+STR    P YLQ+YHC+ + + +H
Sbjct: 395  SHNHISTDNHPAIIANDHSHSPQSHNSIPSIHPTRKSTRISKPPPYLQNYHCNHITSIVH 454

Query: 513  KSESPIPSSTSQGNLYPISNVISYDRLSLAQKQYTPKLSTITEPNSYKEAMCDSNWRNAF 692
             S      S+S    YP+S+ +SY+ LS A K Y   +STI EPN+Y+EAMCD NWRN  
Sbjct: 455  DSSETTHQSSSNCK-YPLSSFVSYNNLSSAHKHYALNISTINEPNTYEEAMCDVNWRNTI 513

Query: 693  KAELDALMKTNTWKLVPLSTNKKAIGCKWVFKLKLHADGSIKRHKARLVAKGFTQTASLD 872
             AEL ALMK NTW LV L T+K+AIGCKWVF LKLHADG I+RHKARLVAKGFTQT  +D
Sbjct: 514  NAELSALMKNNTWNLVQLPTHKRAIGCKWVFNLKLHADGFIERHKARLVAKGFTQTEGID 573

Query: 873  YLETFSPVVKMTTVRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVYMVPPPGLTVSDSR 1052
            Y+ETFSPVVKMTTVR+ +A+AA Q W + QLDVN AFLHGDL EEVYM  PPGL +    
Sbjct: 574  YMETFSPVVKMTTVRVFMALAASQNWPVFQLDVNTAFLHGDLNEEVYMQAPPGLALPHPN 633

Query: 1053 LVCKLERSLYGLKQASR*WNTKLTATLLETGYTQSKSDYSLYTNSTATGFTYILVYVDDL 1232
            LVCKL+RSLYGLKQASR WN KLT TL+ +G+TQSK+DYSL+T  T  GF  ILVYVDDL
Sbjct: 634  LVCKLQRSLYGLKQASRQWNAKLTETLIASGFTQSKADYSLFTKKTCQGFIAILVYVDDL 693

Query: 1233 ILAGTKLNEINRVKKLLDEKFSIKDLGELKYF 1328
            +L GT + EIN++K LLD+KFSIKDLG LKYF
Sbjct: 694  VLGGTDMTEINQLKALLDQKFSIKDLGSLKYF 725


>gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1002

 Score =  404 bits (1038), Expect = e-128
 Identities = 224/444 (50%), Positives = 282/444 (63%), Gaps = 2/444 (0%)
 Frame = +3

Query: 3    NKKKLDPRSRKSIYLGFKTGVKGHLLFDFHSREIFISRDVKFYENGFPYHSNVNAKCSPH 182
            N+KK DPR R+ ++LGFK  VKG +L+D +SRE F+SR V+++E+ FP+           
Sbjct: 326  NRKKFDPRGRRCVFLGFKPQVKGSILYDLNSRETFLSRHVEYFEHIFPF----------- 374

Query: 183  FNSKSSDYYDSFPYNDDLHITGDQNHEANSDDTSPNKSLNTPTPENKNSEPNSETSNKTH 362
                      + P +    I+  ++      DT P       TP + N+ P S       
Sbjct: 375  --------LPTSPLDLTQTISLPRHQPPLPIDTDP-------TPLSTNTTPTS------- 412

Query: 363  NSDNTYDTHNQSTPEIDQPPNDDLRRSTRTRTQPTYLQDYHCSLLNNTIHKSESPIPSST 542
                        +P    PP   +R+STR R  P+YL DYH +LL  T H S       T
Sbjct: 413  ------------SPVSVVPPPPFVRKSTRPRKLPSYLHDYHHTLL--TTHNSP------T 452

Query: 543  SQGNLYPISNVISYDRLSLAQKQYTPKLSTITEPNSYKEAMCDSNWRNAFKAELDALMKT 722
                LY I N ISY  LS +QK ++  +S+I EPNSY EA+ D +W+ A + EL AL K 
Sbjct: 453  ISQPLYSIHNHISYSNLSPSQKAFSLSISSIKEPNSYVEAIQDESWKTAIQTELTALEKN 512

Query: 723  NTWKLVPLSTNKKAIGCKWVFKLKLHADGSIKRHKARLVAKGFTQTASLDYLETFSPVVK 902
            NTW L PL  NK+ +GCKWVFKLK ++DG+I+RHKARLVAKG+TQT +LDYL+TFSPVVK
Sbjct: 513  NTWILTPLPPNKQVVGCKWVFKLKFNSDGTIERHKARLVAKGYTQTETLDYLDTFSPVVK 572

Query: 903  MTTVRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVYMVPPPGLTVS--DSRLVCKLERS 1076
            MTTVR LLAVA  + WH+ QLDVN  FLHGDL EEVYM PPPGLTVS   S  VCKL +S
Sbjct: 573  MTTVRTLLAVATAKNWHIHQLDVNTTFLHGDLHEEVYMTPPPGLTVSPHQSNCVCKLVKS 632

Query: 1077 LYGLKQASR*WNTKLTATLLETGYTQSKSDYSLYTNSTATGFTYILVYVDDLILAGTKLN 1256
            LYGLKQASR WN KLT+ L+++G+ QS +DYSL+T      FT ILVYVDDL+LAG    
Sbjct: 633  LYGLKQASRQWNAKLTSVLIDSGFKQSMADYSLFTKQFGAKFTAILVYVDDLVLAGNDPT 692

Query: 1257 EINRVKKLLDEKFSIKDLGELKYF 1328
            EIN +K LLD+KF+IKDLG+LKYF
Sbjct: 693  EINYIKSLLDQKFTIKDLGQLKYF 716


>gb|PNY03100.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 629

 Score =  391 bits (1005), Expect = e-127
 Identities = 205/345 (59%), Positives = 247/345 (71%), Gaps = 1/345 (0%)
 Frame = +3

Query: 297  LNTPTPENKNSEPNSETSNKTHNSDNTYDTHNQSTPEIDQPPNDDLRRSTRTRTQPTYL- 473
            ++ P PE   S  N   S   H   ++  +H  S     QP  + LRRSTR    P +L 
Sbjct: 1    MSPPIPEITFSTSNHSNSTSPHTVSSSTPSHLLSK----QP--EPLRRSTRNSHPPPFLT 54

Query: 474  QDYHCSLLNNTIHKSESPIPSSTSQGNLYPISNVISYDRLSLAQKQYTPKLSTITEPNSY 653
            ++Y+C+L + T+  S +   SS+S    YPIS+ +SY  +S A   +   LSTI EP  Y
Sbjct: 55   ENYYCNLTSATLPDSSAATLSSSSCK--YPISSYVSYQNISSAHNHFLFNLSTIPEPTCY 112

Query: 654  KEAMCDSNWRNAFKAELDALMKTNTWKLVPLSTNKKAIGCKWVFKLKLHADGSIKRHKAR 833
            ++A+CD NW+ A  AEL AL K NTWKLVPL  +K AIGCKWVFKLKLHADG+I+R+KAR
Sbjct: 113  EKAVCDENWKTAINAELSALEKNNTWKLVPLPLHKHAIGCKWVFKLKLHADGTIERYKAR 172

Query: 834  LVAKGFTQTASLDYLETFSPVVKMTTVRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVY 1013
            LVAKG+TQT  +DY++TFSPVVKMTT+R+LLAVAA Q W L QLDVN AFLHGDL EEVY
Sbjct: 173  LVAKGYTQTEGIDYMDTFSPVVKMTTIRVLLAVAAAQNWPLYQLDVNTAFLHGDLNEEVY 232

Query: 1014 MVPPPGLTVSDSRLVCKLERSLYGLKQASR*WNTKLTATLLETGYTQSKSDYSLYTNSTA 1193
            M PPPGL++  S LVCKL+RSLYGLKQASR WNTKLT TL  +GY QSKSDYSL+T   +
Sbjct: 233  MQPPPGLSLPHSNLVCKLQRSLYGLKQASRQWNTKLTETLTASGYVQSKSDYSLFTKQAS 292

Query: 1194 TGFTYILVYVDDLILAGTKLNEINRVKKLLDEKFSIKDLGELKYF 1328
            +G T ILVYVDDL+L GT  NEI  +K LLDEKFSIKDLG LKYF
Sbjct: 293  SGLTIILVYVDDLVLGGTDSNEIQNIKALLDEKFSIKDLGYLKYF 337


>dbj|GAU37009.1| hypothetical protein TSUD_150450 [Trifolium subterraneum]
          Length = 1184

 Score =  406 bits (1043), Expect = e-127
 Identities = 209/366 (57%), Positives = 253/366 (69%), Gaps = 2/366 (0%)
 Frame = +3

Query: 237  HITGDQNHE-ANSDDTSPNKSL-NTPTPENKNSEPNSETSNKTHNSDNTYDTHNQSTPEI 410
            H+    NH   NS    P+ S+ + P+  +  S  ++  S   H +  T    + S    
Sbjct: 530  HLDSQPNHPPTNSPILVPSSSIPSCPSHTDTTSTSHNHISTANHPATTTTAPSHSSQYHN 589

Query: 411  DQPPNDDLRRSTRTRTQPTYLQDYHCSLLNNTIHKSESPIPSSTSQGNLYPISNVISYDR 590
              P     R+STR    P YL++YHC+ L N +H S   I  S+S    Y +S+ +SY+ 
Sbjct: 590  SIPSIHPTRKSTRISKPPPYLKNYHCNHLTNIVHDSSEIIHQSSSNCK-YSLSSFVSYNN 648

Query: 591  LSLAQKQYTPKLSTITEPNSYKEAMCDSNWRNAFKAELDALMKTNTWKLVPLSTNKKAIG 770
            LS   K Y   +STI EPN+Y+EAMCD NWRNA   EL ALMK NTW LV L  +KKAIG
Sbjct: 649  LSSVHKHYALNISTINEPNTYEEAMCDVNWRNAINVELSALMKNNTWNLVQLPPHKKAIG 708

Query: 771  CKWVFKLKLHADGSIKRHKARLVAKGFTQTASLDYLETFSPVVKMTTVRLLLAVAAIQGW 950
            CKWVFKLKLHADGSI+RHKARLVAKGFTQT  +DY++TFSPVVKMTTVR+ +A+AA Q W
Sbjct: 709  CKWVFKLKLHADGSIERHKARLVAKGFTQTEGIDYMDTFSPVVKMTTVRVFMALAASQNW 768

Query: 951  HLCQLDVNIAFLHGDLQEEVYMVPPPGLTVSDSRLVCKLERSLYGLKQASR*WNTKLTAT 1130
             L QLDVN AFLHGDL EEVYM  PPGL +  S LVCKL+RSLYGLKQASR WN KLT T
Sbjct: 769  PLFQLDVNTAFLHGDLNEEVYMQAPPGLALPHSNLVCKLQRSLYGLKQASRQWNAKLTET 828

Query: 1131 LLETGYTQSKSDYSLYTNSTATGFTYILVYVDDLILAGTKLNEINRVKKLLDEKFSIKDL 1310
            L+ +G+ QSK+DYSL+T  T  GFT ILVYVDDL+L GT + EI+++K LLD+KFSIKDL
Sbjct: 829  LIASGFPQSKADYSLFTKKTCQGFTVILVYVDDLVLGGTDMTEIDQLKALLDQKFSIKDL 888

Query: 1311 GELKYF 1328
            G LKYF
Sbjct: 889  GSLKYF 894


>gb|PNX94376.1| hypothetical protein L195_g017551, partial [Trifolium pratense]
          Length = 949

 Score =  399 bits (1025), Expect = e-127
 Identities = 231/449 (51%), Positives = 285/449 (63%), Gaps = 7/449 (1%)
 Frame = +3

Query: 3    NKKKLDPRSRKSIYLGFKTGVKGHLLFDFHSREIFISRDVKFYENGFPYHSNVNAKCSPH 182
            N+ KLD RSRK I LGFKTGVKGH+LF  H++E+F+SRDV F+E+ FPY+++     S H
Sbjct: 439  NRLKLDSRSRKCISLGFKTGVKGHILFYLHNKELFLSRDVIFFEHLFPYNND-----SSH 493

Query: 183  FNSKSSDYYDSFPYNDDLHITGDQNHEANSDDTSPNKSLNTPTPEN-KNSEPNSETSNKT 359
             +SKS+    +  Y DDL             DT P  + + P P +   S P++ TS  T
Sbjct: 494  -HSKSTTPIPNPTYLDDLF----------DYDTPPPANTSQPFPNHIPPSHPHTHTSTHT 542

Query: 360  HNS-----DNTYDTHNQSTPEIDQPPND-DLRRSTRTRTQPTYLQDYHCSLLNNTIHKSE 521
             +S     +++  + N  TP     P    LRRSTR  T P YLQDYH SL N+ IH   
Sbjct: 543  QSSSSPNCNSSSQSINLPTPSFTISPQPAPLRRSTRPTTTPAYLQDYHYSLPNHAIHALA 602

Query: 522  SPIPSSTSQGNLYPISNVISYDRLSLAQKQYTPKLSTITEPNSYKEAMCDSNWRNAFKAE 701
            S   ++TS  + YP+S  +SY  LS A   Y   LSTI+EP+SY+EA+ + NW NA K E
Sbjct: 603  SS-GTNTSSSSKYPLSAFMSYQNLSPAHTHYIMNLSTISEPSSYEEALNNENWTNAVKTE 661

Query: 702  LDALMKTNTWKLVPLSTNKKAIGCKWVFKLKLHADGSIKRHKARLVAKGFTQTASLDYLE 881
            L ALM TNTW LV L  +K+AIGCKW+FKLKLH DG+++R+KARLVAKGFTQT  LDYLE
Sbjct: 662  LSALMNTNTWSLVQLPKHKRAIGCKWIFKLKLHVDGTVERYKARLVAKGFTQTEGLDYLE 721

Query: 882  TFSPVVKMTTVRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVYMVPPPGLTVSDSRLVC 1061
            TFSPVVKMTT+R+L+A+AA Q W L QLDVN  FLHGDL EEVYM PPPGL +    LVC
Sbjct: 722  TFSPVVKMTTIRVLMAIAASQNWPLFQLDVNTPFLHGDLNEEVYMNPPPGLELPHPDLVC 781

Query: 1062 KLERSLYGLKQASR*WNTKLTATLLETGYTQSKSDYSLYTNSTATGFTYILVYVDDLILA 1241
            KL+RSLYGLKQASR  NTKLT TLL +G                                
Sbjct: 782  KLQRSLYGLKQASRQCNTKLTDTLLSSG-------------------------------- 809

Query: 1242 GTKLNEINRVKKLLDEKFSIKDLGELKYF 1328
            GT ++EI  +K LL++KFSIKDLG LKYF
Sbjct: 810  GTDMHEITTLKTLLNDKFSIKDLGVLKYF 838


>gb|PNY16682.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1232

 Score =  405 bits (1041), Expect = e-126
 Identities = 233/452 (51%), Positives = 287/452 (63%), Gaps = 29/452 (6%)
 Frame = +3

Query: 60   GVKGHLLFDFHSREIF----ISRDVK--------FYENGFPYHSNVNAKCSPHFNSKSSD 203
            G    LLF  H  +IF    IS  V         F  N  PY    +     H +   + 
Sbjct: 491  GTARALLFQSHLPKIFWDYAISHAVHIINRLPTPFLTNKSPYQKTQDNVVKSHTSHSHAY 550

Query: 204  YYDS------FPYNDDLHITGDQNHEANSDDTSPNKSLNTPTPENKN-SEPNSETSNKTH 362
             +D       +P  D  H   D N      ++ PN   N    +N N S P   + + T 
Sbjct: 551  LFDDPFIDCHYPSLDPSH-PNDLNSPLTISNSLPNDPSNHLISQNPNHSIPPPASPHITS 609

Query: 363  NSDN-TYDTHNQS-TPEIDQ--PPN-----DDLRRSTRTRTQPTYL-QDYHCSLLNNTIH 512
            NSDN T D+ N S +P +    PP+     + LR+S R    P YL ++Y+C+  N  +H
Sbjct: 610  NSDNPTNDSPNLSISPSLSHNAPPSPIIQPEPLRKSNRVTQPPPYLTKNYYCNFTNAAVH 669

Query: 513  KSESPIPSSTSQGNLYPISNVISYDRLSLAQKQYTPKLSTITEPNSYKEAMCDSNWRNAF 692
             S     SS+S+   YPIS+ ISY  LS A   Y   ++TI+EP  Y++A+CD NW+ A 
Sbjct: 670  DSSKDTSSSSSKCK-YPISSYISYQHLSSAHHHYISNITTISEPTCYEKAVCDPNWKAAI 728

Query: 693  KAELDALMKTNTWKLVPLSTNKKAIGCKWVFKLKLHADGSIKRHKARLVAKGFTQTASLD 872
            KAEL AL K NTWKLVPL  +K AIGCKWVFKLKLHA+G+I+R+KARLVAKG+TQT  +D
Sbjct: 729  KAELTALEKYNTWKLVPLPKHKHAIGCKWVFKLKLHANGTIERYKARLVAKGYTQTEGID 788

Query: 873  YLETFSPVVKMTTVRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVYMVPPPGLTVSDSR 1052
            Y++TFSPVVKMTT+R+ LA+AAIQ W L QLDVN AFLHGDL EEVYM PPPGL +  + 
Sbjct: 789  YMDTFSPVVKMTTIRMFLAIAAIQNWPLYQLDVNTAFLHGDLNEEVYMKPPPGLALPSNN 848

Query: 1053 LVCKLERSLYGLKQASR*WNTKLTATLLETGYTQSKSDYSLYTNSTATGFTYILVYVDDL 1232
            LVCKL+RSLYGLKQASR WNTKLT TLL +GY QSKSDYSL+T   ++GFT ILVYVDDL
Sbjct: 849  LVCKLQRSLYGLKQASRQWNTKLTETLLSSGYIQSKSDYSLFTKQASSGFTVILVYVDDL 908

Query: 1233 ILAGTKLNEINRVKKLLDEKFSIKDLGELKYF 1328
            +L GT   EI ++K LLDEKFSIKDLG LKYF
Sbjct: 909  VLGGTDSEEIQKIKTLLDEKFSIKDLGILKYF 940


>gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1097

 Score =  402 bits (1033), Expect = e-126
 Identities = 223/444 (50%), Positives = 281/444 (63%), Gaps = 2/444 (0%)
 Frame = +3

Query: 3    NKKKLDPRSRKSIYLGFKTGVKGHLLFDFHSREIFISRDVKFYENGFPYHSNVNAKCSPH 182
            N+KK DPR R+ ++LGFK  VKG +L+D +SRE F+SR V+++E+ FP+           
Sbjct: 482  NRKKFDPRGRRCVFLGFKPQVKGSILYDLNSRETFLSRHVEYFEHIFPF----------- 530

Query: 183  FNSKSSDYYDSFPYNDDLHITGDQNHEANSDDTSPNKSLNTPTPENKNSEPNSETSNKTH 362
                      + P +    I+  ++      DT P       TP + N+ P S       
Sbjct: 531  --------LPTSPLDLTQTISLPRHQPPLPIDTDP-------TPLSTNTTPTS------- 568

Query: 363  NSDNTYDTHNQSTPEIDQPPNDDLRRSTRTRTQPTYLQDYHCSLLNNTIHKSESPIPSST 542
                        +P    PP   +++STR R  P+YL DYH +LL  T H S       T
Sbjct: 569  ------------SPVSVVPPPPFVQKSTRPRKLPSYLHDYHHTLL--TTHNSP------T 608

Query: 543  SQGNLYPISNVISYDRLSLAQKQYTPKLSTITEPNSYKEAMCDSNWRNAFKAELDALMKT 722
                LY I N ISY  LS +QK ++  +S+I EPNSY EA+ D +W+ A + EL AL K 
Sbjct: 609  ISQPLYSIHNHISYSNLSPSQKAFSLSISSIKEPNSYVEAIQDESWKTAIQTELTALEKN 668

Query: 723  NTWKLVPLSTNKKAIGCKWVFKLKLHADGSIKRHKARLVAKGFTQTASLDYLETFSPVVK 902
            NTW L PL  NK+ +GCKWVFKLK ++DG+I+RHKARLVAKG+TQT  LDYL+TFSPVVK
Sbjct: 669  NTWILTPLPPNKQVVGCKWVFKLKFNSDGTIERHKARLVAKGYTQTEGLDYLDTFSPVVK 728

Query: 903  MTTVRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVYMVPPPGLTVS--DSRLVCKLERS 1076
            MTTVR LLAVA  + WH+ QLDVN  FLHGDL EEVYM PPPGLTVS   S  VCKL +S
Sbjct: 729  MTTVRTLLAVATAKNWHIHQLDVNTTFLHGDLHEEVYMTPPPGLTVSPHQSNCVCKLVKS 788

Query: 1077 LYGLKQASR*WNTKLTATLLETGYTQSKSDYSLYTNSTATGFTYILVYVDDLILAGTKLN 1256
            LYGLKQASR WN KLT+ L+++G+ QS +DYSL+T      FT ILVYVDDL+LAG    
Sbjct: 789  LYGLKQASRQWNAKLTSVLIDSGFKQSMADYSLFTKQFGAKFTAILVYVDDLVLAGNDPT 848

Query: 1257 EINRVKKLLDEKFSIKDLGELKYF 1328
            EIN +K LLD+KF+IKDLG+LKYF
Sbjct: 849  EINYIKSLLDQKFTIKDLGQLKYF 872


>gb|KYP67096.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 850

 Score =  395 bits (1015), Expect = e-126
 Identities = 214/444 (48%), Positives = 278/444 (62%), Gaps = 2/444 (0%)
 Frame = +3

Query: 3    NKKKLDPRSRKSIYLGFKTGVKGHLLFDFHSREIFISRDVKFYENGFPY--HSNVNAKCS 176
            N+ KLD R+RK I+LG+K G KG +L+D  +REIFISRDV FYE  FP     N  +K +
Sbjct: 255  NRTKLDERARKCIFLGYKDGTKGCVLYDLKTREIFISRDVLFYEQNFPMLEKHNQQSKDN 314

Query: 177  PHFNSKSSDYYDSFPYNDDLHITGDQNHEANSDDTSPNKSLNTPTPENKNSEPNSETSNK 356
             H  ++      SF  ND  H+  +     N    +    LN               +N+
Sbjct: 315  EH-QTQVPSIQQSFFANDLFHLDNENVFHTNEPALTHIDGLNN--------------NNQ 359

Query: 357  THNSDNTYDTHNQSTPEIDQPPNDDLRRSTRTRTQPTYLQDYHCSLLNNTIHKSESPIPS 536
                DN + T               +R S R R  P+YL+DYHC+L             S
Sbjct: 360  VQQVDNNHYTA--------------VRHSQRERRPPSYLKDYHCTLATTG--------SS 397

Query: 537  STSQGNLYPISNVISYDRLSLAQKQYTPKLSTITEPNSYKEAMCDSNWRNAFKAELDALM 716
            S      YPIS+ +SY+ LS + KQY   +S+I+EP +++EA+  S WRNA   EL AL 
Sbjct: 398  SNHPTVRYPISSCLSYNNLSSSHKQYIFSISSISEPKTFEEAVQHSCWRNAINDELQALD 457

Query: 717  KTNTWKLVPLSTNKKAIGCKWVFKLKLHADGSIKRHKARLVAKGFTQTASLDYLETFSPV 896
            K  TW L  L   KK I CKWVFK+K ++DGSI+RHKARLVAKGFTQT  +D++ETFSPV
Sbjct: 458  KNQTWILTSLPPGKKLIKCKWVFKVKHYSDGSIERHKARLVAKGFTQTEGIDFMETFSPV 517

Query: 897  VKMTTVRLLLAVAAIQGWHLCQLDVNIAFLHGDLQEEVYMVPPPGLTVSDSRLVCKLERS 1076
            VKMTT+RLLL++A+   WHL QLDVN AFLHG L EEVYM PPPGL + D +LVCKL +S
Sbjct: 518  VKMTTIRLLLSIASASNWHLHQLDVNTAFLHGHLNEEVYMEPPPGLELQDEKLVCKLTKS 577

Query: 1077 LYGLKQASR*WNTKLTATLLETGYTQSKSDYSLYTNSTATGFTYILVYVDDLILAGTKLN 1256
            +YGL+QASR WN +LT  L+   Y++SK+DYSL+T  ++ G T IL YVDDL+LAG  L+
Sbjct: 578  IYGLRQASRQWNARLTEVLISLDYSKSKADYSLFTKKSSKGLTVILTYVDDLVLAGEDLD 637

Query: 1257 EINRVKKLLDEKFSIKDLGELKYF 1328
            EIN VK++L ++F IKDLG+LK+F
Sbjct: 638  EINNVKQILHKEFGIKDLGQLKFF 661