BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Angelica27_contig00008895
         (1460 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_017215057.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   667   0.0  
KZM89696.1 hypothetical protein DCAR_022941 [Daucus carota subsp...   658   0.0  
XP_019186766.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   566   0.0  
XP_003634352.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   543   0.0  
KVI07293.1 Pseudouridine synthase, catalytic domain-containing p...   537   0.0  
XP_018808134.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   534   0.0  
XP_016492071.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   529   0.0  
XP_009798870.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   529   0.0  
XP_019244907.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   526   0.0  
XP_016493442.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   526   0.0  
XP_009620048.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   525   0.0  
OIT03965.1 rna uridine synthase 2, chloroplastic [Nicotiana atte...   524   0.0  
CDP07347.1 unnamed protein product [Coffea canephora]                 524   0.0  
EOY15125.1 Pseudouridine synthase family protein isoform 1 [Theo...   523   0.0  
XP_007017900.2 PREDICTED: RNA pseudouridine synthase 2, chloropl...   523   0.0  
XP_019244906.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   520   e-180
OMO87357.1 hypothetical protein CCACVL1_09113 [Corchorus capsula...   519   e-179
XP_004238386.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   519   e-179
XP_010320443.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   518   e-179
XP_010241328.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   520   e-179

>XP_017215057.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Daucus carota
            subsp. sativus]
          Length = 431

 Score =  667 bits (1721), Expect = 0.0
 Identities = 339/419 (80%), Positives = 364/419 (86%), Gaps = 3/419 (0%)
 Frame = -2

Query: 1420 FPRNP---TSTNSRVSWLLVRACSNSTADTRRNNYAGVELEESVNDVNSSKLRLDTWISS 1250
            FP NP     T SR  WLL+RACS S +     NYAGV LEESVN   ++K+RLDTWISS
Sbjct: 19   FPGNPRYSACTKSRAPWLLIRACSTSNS-----NYAGVALEESVNST-TTKVRLDTWISS 72

Query: 1249 RINGISRARVQSTIKSGLVTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQPEDIPLNI 1070
            RI+GISRARVQSTIKSGLVTVNGR I KVSHK++SGDKVSCTISELQ LKAQP+DIPL+I
Sbjct: 73   RIDGISRARVQSTIKSGLVTVNGRIIDKVSHKLKSGDKVSCTISELQPLKAQPQDIPLDI 132

Query: 1069 VYEDDHLLVVNKPAHMVVHPAPGNATGTLVNGILHHCCLPMASLPIVDIPXXXXXXXXXX 890
            +YEDDHLLVVNKP HMVVHPAPGNATGTLVN ILHHCCLP+AS PI++IP          
Sbjct: 133  LYEDDHLLVVNKPPHMVVHPAPGNATGTLVNAILHHCCLPVASFPIMEIPSDEDDVSQGE 192

Query: 889  XSCYSTDDSYSEGLFSGLNEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTI 710
             S YS DD+Y E  FSGL EASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQ T+
Sbjct: 193  ISSYSADDTYLEPSFSGLTEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQRTV 252

Query: 709  QRIYISLTCGVPSPASGRVDIPIGRDLNNRIRMAAVVGSGKCGKTRHAASRFRVIEILAG 530
            QR+YISLTCGVP PA GRV+IPI RDLNNRIRMAAVVGSGKCGKTRHAASRFRVIEILAG
Sbjct: 253  QRVYISLTCGVPFPALGRVNIPISRDLNNRIRMAAVVGSGKCGKTRHAASRFRVIEILAG 312

Query: 529  GGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALDRLQQKNSCNLPGQLLQ 350
            GG ALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKS+ALDRLQQKNS NLPG+LLQ
Sbjct: 313  GGCALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSLALDRLQQKNSSNLPGKLLQ 372

Query: 349  IISNLERPCLHALTLGFMHPHTGKEVHLSCLPPADFAEVLSGLRYVNTEKIANMEKVHH 173
            +ISNLERPCLHALTLGFMHPHT K+VH SCLPP DFAEVLS LR VNTEKI NME+V++
Sbjct: 373  LISNLERPCLHALTLGFMHPHTRKQVHFSCLPPVDFAEVLSVLRSVNTEKIMNMEEVYN 431


>KZM89696.1 hypothetical protein DCAR_022941 [Daucus carota subsp. sativus]
          Length = 429

 Score =  658 bits (1698), Expect = 0.0
 Identities = 334/412 (81%), Positives = 358/412 (86%), Gaps = 3/412 (0%)
 Frame = -2

Query: 1420 FPRNP---TSTNSRVSWLLVRACSNSTADTRRNNYAGVELEESVNDVNSSKLRLDTWISS 1250
            FP NP     T SR  WLL+RACS S +     NYAGV LEESVN   ++K+RLDTWISS
Sbjct: 15   FPGNPRYSACTKSRAPWLLIRACSTSNS-----NYAGVALEESVNST-TTKVRLDTWISS 68

Query: 1249 RINGISRARVQSTIKSGLVTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQPEDIPLNI 1070
            RI+GISRARVQSTIKSGLVTVNGR I KVSHK++SGDKVSCTISELQ LKAQP+DIPL+I
Sbjct: 69   RIDGISRARVQSTIKSGLVTVNGRIIDKVSHKLKSGDKVSCTISELQPLKAQPQDIPLDI 128

Query: 1069 VYEDDHLLVVNKPAHMVVHPAPGNATGTLVNGILHHCCLPMASLPIVDIPXXXXXXXXXX 890
            +YEDDHLLVVNKP HMVVHPAPGNATGTLVN ILHHCCLP+AS PI++IP          
Sbjct: 129  LYEDDHLLVVNKPPHMVVHPAPGNATGTLVNAILHHCCLPVASFPIMEIPSDEDDVSQGE 188

Query: 889  XSCYSTDDSYSEGLFSGLNEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTI 710
             S YS DD+Y E  FSGL EASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQ T+
Sbjct: 189  ISSYSADDTYLEPSFSGLTEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQRTV 248

Query: 709  QRIYISLTCGVPSPASGRVDIPIGRDLNNRIRMAAVVGSGKCGKTRHAASRFRVIEILAG 530
            QR+YISLTCGVP PA GRV+IPI RDLNNRIRMAAVVGSGKCGKTRHAASRFRVIEILAG
Sbjct: 249  QRVYISLTCGVPFPALGRVNIPISRDLNNRIRMAAVVGSGKCGKTRHAASRFRVIEILAG 308

Query: 529  GGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALDRLQQKNSCNLPGQLLQ 350
            GG ALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKS+ALDRLQQKNS NLPG+LLQ
Sbjct: 309  GGCALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSLALDRLQQKNSSNLPGKLLQ 368

Query: 349  IISNLERPCLHALTLGFMHPHTGKEVHLSCLPPADFAEVLSGLRYVNTEKIA 194
            +ISNLERPCLHALTLGFMHPHT K+VH SCLPP DFAEVLS LR VNTEK++
Sbjct: 369  LISNLERPCLHALTLGFMHPHTRKQVHFSCLPPVDFAEVLSVLRSVNTEKVS 420


>XP_019186766.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Ipomoea nil]
          Length = 453

 Score =  567 bits (1460), Expect = 0.0
 Identities = 288/418 (68%), Positives = 340/418 (81%), Gaps = 11/418 (2%)
 Frame = -2

Query: 1414 RNPTSTNS--RVSWLLVRACSNSTADTRR---------NNYAGVELEESVNDVNSSKLRL 1268
            R+P +T S  R+S L+ RA S S     R          NY+GV+LEE+V + +S KLRL
Sbjct: 37   RSPRATASYGRISNLIFRAFSKSAPSNARPEPIPAHQITNYSGVKLEETV-EPSSGKLRL 95

Query: 1267 DTWISSRINGISRARVQSTIKSGLVTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQPE 1088
            D+WISSRI+G+SRARVQS+I+SGLVTVNGR I KVSH V+ GDKV+CTI+ELQ L A+PE
Sbjct: 96   DSWISSRIDGVSRARVQSSIRSGLVTVNGRIIDKVSHTVKRGDKVNCTIAELQPLTAEPE 155

Query: 1087 DIPLNIVYEDDHLLVVNKPAHMVVHPAPGNATGTLVNGILHHCCLPMASLPIVDIPXXXX 908
            D+PL+IVYEDDH+LVVNKPAHMVVHPAPGN TGTLVNGILHHC LP+AS P  ++     
Sbjct: 156  DMPLDIVYEDDHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPVASFPYQEVLSDGE 215

Query: 907  XXXXXXXSCYSTDDSYSEGLFSGLNEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQ 728
                   S +S++  Y  G +S + EASIRPGIVHRLDKGTSGLLVVAKDE+SHAHL+EQ
Sbjct: 216  AALDDELSTFSSEQDYVGGDYSAIGEASIRPGIVHRLDKGTSGLLVVAKDEYSHAHLAEQ 275

Query: 727  FKQHTIQRIYISLTCGVPSPASGRVDIPIGRDLNNRIRMAAVVGSGKCGKTRHAASRFRV 548
            FK+H+I+R+Y++LTCGVP+PASGR+DIPIGRD NNR+RMAA+ G  K GKTRHAASR++V
Sbjct: 276  FKKHSIKRVYVALTCGVPTPASGRIDIPIGRDPNNRLRMAAISGFSKNGKTRHAASRYKV 335

Query: 547  IEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALDRLQQKNSCNL 368
            IEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAL  LQQ+N    
Sbjct: 336  IEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLQQRNPSEF 395

Query: 367  PGQLLQIISNLERPCLHALTLGFMHPHTGKEVHLSCLPPADFAEVLSGLRYVNTEKIA 194
             G+LLQ+IS LERPCLHALTLGF HP TG+ VH + LPP DFAEVLS LR ++TEK++
Sbjct: 396  HGKLLQLISRLERPCLHALTLGFRHPKTGENVHFTQLPPTDFAEVLSDLRTISTEKVS 453


>XP_003634352.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Vitis vinifera] CBI18920.3 unnamed protein product,
            partial [Vitis vinifera]
          Length = 433

 Score =  543 bits (1399), Expect = 0.0
 Identities = 284/415 (68%), Positives = 327/415 (78%), Gaps = 8/415 (1%)
 Frame = -2

Query: 1420 FPRNPTSTNSRVSWLLVRACSNSTADT------RRNNYAGVELEESVNDVNSS--KLRLD 1265
            FPRNP S  SRV + ++RACSNST +       RR NYAGV LEE+V DVNS   KLRLD
Sbjct: 23   FPRNPKSC-SRV-FRILRACSNSTDEPLVSVSGRRTNYAGVRLEETVVDVNSDSGKLRLD 80

Query: 1264 TWISSRINGISRARVQSTIKSGLVTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQPED 1085
            +WISSRI GISRARVQS+I+SGLV+VN R + KVSH +R+GDKV+CTISELQ L+A+PED
Sbjct: 81   SWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSHVIRAGDKVNCTISELQPLRAEPED 140

Query: 1084 IPLNIVYEDDHLLVVNKPAHMVVHPAPGNATGTLVNGILHHCCLPMASLPIVDIPXXXXX 905
            IPL+IVYED+H+LVVNKPAHMVVHPAPGNA+GTLVNGILHHC LP  +LP  D       
Sbjct: 141  IPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVALPNRDSEEDDIS 200

Query: 904  XXXXXXSCYSTDDSYSEGLFSGLNEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQF 725
                        +S++ G   G  E +IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQF
Sbjct: 201  DDEF--------NSFAAGQNCGTCETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQF 252

Query: 724  KQHTIQRIYISLTCGVPSPASGRVDIPIGRDLNNRIRMAAVVGSGKCGKTRHAASRFRVI 545
            K H+I R+YISLT GVP+P SGRV+IP+GRD NNRIRM AV G    G+ RHAASR++VI
Sbjct: 253  KLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRYKVI 312

Query: 544  EILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALDRLQQKNSCNLP 365
            EILA GGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MAL  L+ +   +  
Sbjct: 313  EILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPSSHH 372

Query: 364  GQLLQIISNLERPCLHALTLGFMHPHTGKEVHLSCLPPADFAEVLSGLRYVNTEK 200
            GQL Q++S L+RPCLHA+ LGF HP TGK VH SC PP DFAE+LS LR ++TEK
Sbjct: 373  GQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWLRKISTEK 427


>KVI07293.1 Pseudouridine synthase, catalytic domain-containing protein [Cynara
            cardunculus var. scolymus]
          Length = 435

 Score =  537 bits (1383), Expect = 0.0
 Identities = 271/378 (71%), Positives = 306/378 (80%)
 Frame = -2

Query: 1339 RRNNYAGVELEESVNDVNSSKLRLDTWISSRINGISRARVQSTIKSGLVTVNGRTIHKVS 1160
            RR NY GV LEESV ++ S K+RLDTWIS+RINGISRARVQS+I+SGLV+VN R   K S
Sbjct: 60   RRTNYTGVRLEESVEELKSGKIRLDTWISTRINGISRARVQSSIRSGLVSVNNRVTVKAS 119

Query: 1159 HKVRSGDKVSCTISELQQLKAQPEDIPLNIVYEDDHLLVVNKPAHMVVHPAPGNATGTLV 980
            H VR GDKV CTISELQ LKA+ EDI L+IVYED+H+LVVNKPAHMVVHPAPGN TGTLV
Sbjct: 120  HMVRHGDKVECTISELQPLKAEGEDIALDIVYEDEHVLVVNKPAHMVVHPAPGNTTGTLV 179

Query: 979  NGILHHCCLPMASLPIVDIPXXXXXXXXXXXSCYSTDDSYSEGLFSGLNEASIRPGIVHR 800
            NGILHHC LP  S    ++                 + + S+    G NE S+RPGIVHR
Sbjct: 180  NGILHHCSLPTPSFQDQELLSDSDDLDDIELDEPFINQTDSKDFSFGTNETSVRPGIVHR 239

Query: 799  LDKGTSGLLVVAKDEHSHAHLSEQFKQHTIQRIYISLTCGVPSPASGRVDIPIGRDLNNR 620
            LDKGTSGLLVVAKDEHSHAHLS+QFKQHTIQRIY+SLTCGVPSPASGRVDIPIGRDL NR
Sbjct: 240  LDKGTSGLLVVAKDEHSHAHLSQQFKQHTIQRIYVSLTCGVPSPASGRVDIPIGRDLTNR 299

Query: 619  IRMAAVVGSGKCGKTRHAASRFRVIEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLL 440
            IRM A  G  KCGK+R+AAS  RV+EILAGGGSALVEW+LETGRTHQIRAHAKYLGIPL+
Sbjct: 300  IRMVADTGPTKCGKSRYAAS--RVVEILAGGGSALVEWKLETGRTHQIRAHAKYLGIPLM 357

Query: 439  GDEVYGGTKSMALDRLQQKNSCNLPGQLLQIISNLERPCLHALTLGFMHPHTGKEVHLSC 260
            GDEVYGGTK+MAL RL  KN  +L GQL QI+S L+RPCLHALTLGF HP TG+++  SC
Sbjct: 358  GDEVYGGTKNMALARLHPKNPSSLHGQLSQIVSKLDRPCLHALTLGFTHPCTGEKMQFSC 417

Query: 259  LPPADFAEVLSGLRYVNT 206
            LPP DFAE+L+GLR ++T
Sbjct: 418  LPPVDFAELLTGLRNIST 435


>XP_018808134.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Juglans regia]
          Length = 446

 Score =  534 bits (1375), Expect = 0.0
 Identities = 271/415 (65%), Positives = 327/415 (78%), Gaps = 9/415 (2%)
 Frame = -2

Query: 1417 PRNPTSTNSRVSWLLVRACSNSTADT---------RRNNYAGVELEESVNDVNSSKLRLD 1265
            PRNP + +S +    V + S+ + ++         RR N+ GV+LE++V+ +NS KLRLD
Sbjct: 28   PRNPRTPSSSLRICFVASSSSGSTNSDEDKEDLAGRRANFGGVQLEDTVS-LNSGKLRLD 86

Query: 1264 TWISSRINGISRARVQSTIKSGLVTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQPED 1085
            +WISSRI GISRARVQS+I+SGLV VNGR + KVSH V++GDKV+CTISELQ L+A PED
Sbjct: 87   SWISSRIGGISRARVQSSIRSGLVAVNGRVVDKVSHNVKTGDKVNCTISELQPLRAVPED 146

Query: 1084 IPLNIVYEDDHLLVVNKPAHMVVHPAPGNATGTLVNGILHHCCLPMASLPIVDIPXXXXX 905
            IPL+IV+ED+H+LVVNKPAHMVVHPAPGNATGTLVNG+LHHC  P+ +    ++      
Sbjct: 147  IPLDIVFEDEHVLVVNKPAHMVVHPAPGNATGTLVNGVLHHCSPPVVAFSNEEVLSDAED 206

Query: 904  XXXXXXSCYSTDDSYSEGLFSGLNEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQF 725
                  S +S   + ++GL+S  + ASIRPGIVHRLDKGTSGLLVVAKDEHSHA+LSEQF
Sbjct: 207  ISDDELSSFSAGQNPNDGLYSRRSGASIRPGIVHRLDKGTSGLLVVAKDEHSHANLSEQF 266

Query: 724  KQHTIQRIYISLTCGVPSPASGRVDIPIGRDLNNRIRMAAVVGSGKCGKTRHAASRFRVI 545
            K HTIQR+Y+SLT GVPSP +GRV++PIGRDLNNRIRMAA+ GS    + RHAASR++VI
Sbjct: 267  KLHTIQRLYVSLTSGVPSPMAGRVEVPIGRDLNNRIRMAAIPGSNISRQARHAASRYKVI 326

Query: 544  EILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALDRLQQKNSCNLP 365
            EILAGG SALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAL  L+ +   +  
Sbjct: 327  EILAGGSSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLRPRTPPSRH 386

Query: 364  GQLLQIISNLERPCLHALTLGFMHPHTGKEVHLSCLPPADFAEVLSGLRYVNTEK 200
            GQLLQ++S LERPCLHAL LGFMHPHT + V+  C PPADFAE+L  LR + T K
Sbjct: 387  GQLLQLVSRLERPCLHALALGFMHPHTMENVYFQCPPPADFAEILGQLRKIGTVK 441


>XP_016492071.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
            [Nicotiana tabacum]
          Length = 431

 Score =  529 bits (1362), Expect = 0.0
 Identities = 274/419 (65%), Positives = 329/419 (78%), Gaps = 12/419 (2%)
 Frame = -2

Query: 1417 PRNPTSTN-SRVSWLLVRACSNSTADT-----------RRNNYAGVELEESVNDVNSSKL 1274
            P+NP   + SRVS  + RA S    D+           RR+NY+GV+LEE+V DV + KL
Sbjct: 13   PQNPKPFSFSRVSSFIFRAFSKFPGDSDSDDSPGEITGRRSNYSGVKLEETV-DVKTGKL 71

Query: 1273 RLDTWISSRINGISRARVQSTIKSGLVTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQ 1094
            RLD+W+SSRINGISRARVQS+I+SGLV+VNGR   KVSH V+ GDKV+CTI++L+ L+A+
Sbjct: 72   RLDSWVSSRINGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCTIADLKPLRAE 131

Query: 1093 PEDIPLNIVYEDDHLLVVNKPAHMVVHPAPGNATGTLVNGILHHCCLPMASLPIVDIPXX 914
            PEDIPL+IVYEDDH+LVVNKPAHMVVHPAPGNATGTLV+GILHHC LP  S P  ++   
Sbjct: 132  PEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLSD 191

Query: 913  XXXXXXXXXSCYSTDDSYSEGLFSGLNEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 734
                     + +STD S      S + E S+RPGIVHRLDKGTSGLLVVAK E S A+L+
Sbjct: 192  VEDDSHDELNLFSTDQSPYGVDSSVVCEPSVRPGIVHRLDKGTSGLLVVAKTEQSLANLA 251

Query: 733  EQFKQHTIQRIYISLTCGVPSPASGRVDIPIGRDLNNRIRMAAVVGSGKCGKTRHAASRF 554
            EQFK+HTI+R+Y+S+TCGVP+  SGR+DIPIGRD NNRIRM A+ GS K G+ R+AASR+
Sbjct: 252  EQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMIAIPGSHKGGRARNAASRY 311

Query: 553  RVIEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALDRLQQKNSC 374
            +VIE LAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MAL  LQ K   
Sbjct: 312  KVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLQPKTHP 371

Query: 373  NLPGQLLQIISNLERPCLHALTLGFMHPHTGKEVHLSCLPPADFAEVLSGLRYVNTEKI 197
               G+L Q+IS +ERPCLHALTLGF HP+TG+ +H + LPPADFAEVLS LR ++TEK+
Sbjct: 372  RSHGKLSQLISGIERPCLHALTLGFRHPYTGENIHFTRLPPADFAEVLSELRAISTEKV 430


>XP_009798870.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Nicotiana
            sylvestris]
          Length = 431

 Score =  529 bits (1362), Expect = 0.0
 Identities = 274/419 (65%), Positives = 329/419 (78%), Gaps = 12/419 (2%)
 Frame = -2

Query: 1417 PRNPTSTN-SRVSWLLVRACSNSTADT-----------RRNNYAGVELEESVNDVNSSKL 1274
            P+NP   + SRVS  + RA S    D+           RR+NY+GV+LEE+V DV + KL
Sbjct: 13   PQNPKPFSFSRVSSFIFRAFSKFPGDSDSDDSPSEITGRRSNYSGVKLEETV-DVKTGKL 71

Query: 1273 RLDTWISSRINGISRARVQSTIKSGLVTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQ 1094
            RLD+W+SSRINGISRARVQS+I+SGLV+VNGR   KVSH V+ GDKV+CTI++L+ L+A+
Sbjct: 72   RLDSWVSSRINGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCTIADLKPLRAE 131

Query: 1093 PEDIPLNIVYEDDHLLVVNKPAHMVVHPAPGNATGTLVNGILHHCCLPMASLPIVDIPXX 914
            PEDIPL+IVYEDDH+LVVNKPAHMVVHPAPGNATGTLV+GILHHC LP  S P  ++   
Sbjct: 132  PEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLSD 191

Query: 913  XXXXXXXXXSCYSTDDSYSEGLFSGLNEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 734
                     + +STD S      S + E S+RPGIVHRLDKGTSGLLVVAK E S A+L+
Sbjct: 192  VEDDSDDELNLFSTDQSPYGVDSSVVCEPSVRPGIVHRLDKGTSGLLVVAKTEQSLANLA 251

Query: 733  EQFKQHTIQRIYISLTCGVPSPASGRVDIPIGRDLNNRIRMAAVVGSGKCGKTRHAASRF 554
            EQFK+HTI+R+Y+S+TCGVP+  SGR+DIPIGRD NNRIRM A+ GS K G+ R+AASR+
Sbjct: 252  EQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMIAIPGSHKGGRARNAASRY 311

Query: 553  RVIEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALDRLQQKNSC 374
            +VIE LAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MAL  LQ K   
Sbjct: 312  KVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLQPKTPP 371

Query: 373  NLPGQLLQIISNLERPCLHALTLGFMHPHTGKEVHLSCLPPADFAEVLSGLRYVNTEKI 197
               G+L Q+IS +ERPCLHALTLGF HP+TG+ +H + LPPADFAEVLS LR ++TEK+
Sbjct: 372  RSHGKLSQLISGIERPCLHALTLGFRHPYTGENIHFTRLPPADFAEVLSELRAISTEKV 430


>XP_019244907.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Nicotiana attenuata]
          Length = 440

 Score =  526 bits (1356), Expect = 0.0
 Identities = 272/424 (64%), Positives = 329/424 (77%), Gaps = 12/424 (2%)
 Frame = -2

Query: 1417 PRNPTSTN-SRVSWLLVRACSNSTADT-----------RRNNYAGVELEESVNDVNSSKL 1274
            P+NP   + SRVS  +VRA S    D+           RR+NY+GV+LEE+V DV + KL
Sbjct: 13   PQNPKPFSFSRVSSFIVRAFSKFPGDSDSDDSPDEIQSRRSNYSGVKLEETV-DVKTGKL 71

Query: 1273 RLDTWISSRINGISRARVQSTIKSGLVTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQ 1094
            RLD+W+SSRINGISRARVQS+I+SGLV+VNGR   KVSH V+ GDKV+CTI++L+ L+A+
Sbjct: 72   RLDSWVSSRINGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCTIADLKPLRAE 131

Query: 1093 PEDIPLNIVYEDDHLLVVNKPAHMVVHPAPGNATGTLVNGILHHCCLPMASLPIVDIPXX 914
            PEDIPL+IVYEDDH+LVVNKPAHMVVHPAPGNATGTLV+GILHHC LP  S    ++   
Sbjct: 132  PEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFQGEEVLSD 191

Query: 913  XXXXXXXXXSCYSTDDSYSEGLFSGLNEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 734
                     + +  + S      S + E S+RPGIVHRLDKGTSGLLVVAK E S A+L+
Sbjct: 192  VEDTSDDELNLFPANQSPYGVDSSVMREPSVRPGIVHRLDKGTSGLLVVAKTEQSLANLA 251

Query: 733  EQFKQHTIQRIYISLTCGVPSPASGRVDIPIGRDLNNRIRMAAVVGSGKCGKTRHAASRF 554
            EQFK+HTI+R+Y+S+TCGVP+  SGR+DIPIGRD NNRIRM A+ GS K G+ R+AASR+
Sbjct: 252  EQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMVAIPGSHKGGRARNAASRY 311

Query: 553  RVIEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALDRLQQKNSC 374
            +VIE LAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MAL  LQ K   
Sbjct: 312  KVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLQPKTPP 371

Query: 373  NLPGQLLQIISNLERPCLHALTLGFMHPHTGKEVHLSCLPPADFAEVLSGLRYVNTEKIA 194
               G+L Q+IS +ERPCLHALTLGF HP+TG+ +H + LPPADFAEVLS LR ++TEK+ 
Sbjct: 372  RSHGKLSQLISGIERPCLHALTLGFKHPYTGENIHFTRLPPADFAEVLSELRAISTEKVT 431

Query: 193  NMEK 182
             + K
Sbjct: 432  RLHK 435


>XP_016493442.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
            [Nicotiana tabacum]
          Length = 431

 Score =  526 bits (1354), Expect = 0.0
 Identities = 270/419 (64%), Positives = 328/419 (78%), Gaps = 12/419 (2%)
 Frame = -2

Query: 1417 PRNPTSTN-SRVSWLLVRACSNSTADT-----------RRNNYAGVELEESVNDVNSSKL 1274
            P+NP   + SRVS  ++RA S    D+           RR+NY+GV+LEE+V D+ + KL
Sbjct: 13   PQNPKPFSFSRVSSFIIRAFSKFPGDSDSDDSPDEIQSRRSNYSGVKLEETV-DIKTGKL 71

Query: 1273 RLDTWISSRINGISRARVQSTIKSGLVTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQ 1094
            RLD+W+SSRI+GISRARVQS+I+SGLV+VNGR   KVSH V+ GDKV+CTI++L+ L+A+
Sbjct: 72   RLDSWVSSRIDGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCTIADLKPLRAE 131

Query: 1093 PEDIPLNIVYEDDHLLVVNKPAHMVVHPAPGNATGTLVNGILHHCCLPMASLPIVDIPXX 914
            PEDIPL+IVYEDDH+LVVNKPAHMVVHPAPGN TGTLV+GILHHC LP  S P  ++   
Sbjct: 132  PEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNVTGTLVSGILHHCSLPTISFPGEEVLSD 191

Query: 913  XXXXXXXXXSCYSTDDSYSEGLFSGLNEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 734
                     + +S D S +    S + E SIRPGIVHRLDKGTSGLLVVAK E S A+L+
Sbjct: 192  VEDASGDELNMFSADQSPNGVDASRMYEPSIRPGIVHRLDKGTSGLLVVAKTEQSLANLA 251

Query: 733  EQFKQHTIQRIYISLTCGVPSPASGRVDIPIGRDLNNRIRMAAVVGSGKCGKTRHAASRF 554
            EQFK+HTI+R+Y+S+TCGVP+  SGR+DIPIGRD NNRIRM A+ GS K G+ R+AASR+
Sbjct: 252  EQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMVAIPGSHKGGRARNAASRY 311

Query: 553  RVIEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALDRLQQKNSC 374
            +VIE LAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MAL  LQ K   
Sbjct: 312  KVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLQPKTPP 371

Query: 373  NLPGQLLQIISNLERPCLHALTLGFMHPHTGKEVHLSCLPPADFAEVLSGLRYVNTEKI 197
               G L Q+IS +ERPCLHALTLGF HP+TG+ +H + LPPADFAEVL+ LR ++TEK+
Sbjct: 372  RSHGNLSQLISGIERPCLHALTLGFRHPYTGENIHFTRLPPADFAEVLTELRAISTEKV 430


>XP_009620048.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Nicotiana
            tomentosiformis]
          Length = 431

 Score =  525 bits (1351), Expect = 0.0
 Identities = 269/419 (64%), Positives = 328/419 (78%), Gaps = 12/419 (2%)
 Frame = -2

Query: 1417 PRNPTSTN-SRVSWLLVRACSNSTADT-----------RRNNYAGVELEESVNDVNSSKL 1274
            P+NP   + SRVS  ++RA S    D+           R++NY+GV+LEE+V D+ + KL
Sbjct: 13   PQNPKPFSFSRVSSFIIRAFSKFPGDSDSDDSPDEIQSRKSNYSGVKLEETV-DIKTGKL 71

Query: 1273 RLDTWISSRINGISRARVQSTIKSGLVTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQ 1094
            RLD+W+SSRI+GISRARVQS+I+SGLV+VNGR   KVSH V+ GDKV+CTI++L+ L+A+
Sbjct: 72   RLDSWVSSRIDGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCTIADLKPLRAE 131

Query: 1093 PEDIPLNIVYEDDHLLVVNKPAHMVVHPAPGNATGTLVNGILHHCCLPMASLPIVDIPXX 914
            PEDIPL+IVYEDDH+LVVNKPAHMVVHPAPGN TGTLV+GILHHC LP  S P  ++   
Sbjct: 132  PEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNVTGTLVSGILHHCSLPTISFPGEEVLSD 191

Query: 913  XXXXXXXXXSCYSTDDSYSEGLFSGLNEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 734
                     + +S D S +    S + E SIRPGIVHRLDKGTSGLLVVAK E S A+L+
Sbjct: 192  VEDASGDELNMFSADQSPNGVDASRMYEPSIRPGIVHRLDKGTSGLLVVAKTEQSLANLA 251

Query: 733  EQFKQHTIQRIYISLTCGVPSPASGRVDIPIGRDLNNRIRMAAVVGSGKCGKTRHAASRF 554
            EQFK+HTI+R+Y+S+TCGVP+  SGR+DIPIGRD NNRIRM A+ GS K G+ R+AASR+
Sbjct: 252  EQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMVAIPGSHKGGRARNAASRY 311

Query: 553  RVIEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALDRLQQKNSC 374
            +VIE LAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MAL  LQ K   
Sbjct: 312  KVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLQPKTPP 371

Query: 373  NLPGQLLQIISNLERPCLHALTLGFMHPHTGKEVHLSCLPPADFAEVLSGLRYVNTEKI 197
               G L Q+IS +ERPCLHALTLGF HP+TG+ +H + LPPADFAEVL+ LR ++TEK+
Sbjct: 372  RSHGNLSQLISGIERPCLHALTLGFRHPYTGENIHFTRLPPADFAEVLTELRAISTEKV 430


>OIT03965.1 rna uridine synthase 2, chloroplastic [Nicotiana attenuata]
          Length = 431

 Score =  524 bits (1349), Expect = 0.0
 Identities = 271/419 (64%), Positives = 327/419 (78%), Gaps = 12/419 (2%)
 Frame = -2

Query: 1417 PRNPTSTN-SRVSWLLVRACSNSTADT-----------RRNNYAGVELEESVNDVNSSKL 1274
            P+NP   + SRVS  +VRA S    D+           RR+NY+GV+LEE+V DV + KL
Sbjct: 13   PQNPKPFSFSRVSSFIVRAFSKFPGDSDSDDSPDEIQSRRSNYSGVKLEETV-DVKTGKL 71

Query: 1273 RLDTWISSRINGISRARVQSTIKSGLVTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQ 1094
            RLD+W+SSRINGISRARVQS+I+SGLV+VNGR   KVSH V+ GDKV+CTI++L+ L+A+
Sbjct: 72   RLDSWVSSRINGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCTIADLKPLRAE 131

Query: 1093 PEDIPLNIVYEDDHLLVVNKPAHMVVHPAPGNATGTLVNGILHHCCLPMASLPIVDIPXX 914
            PEDIPL+IVYEDDH+LVVNKPAHMVVHPAPGNATGTLV+GILHHC LP  S    ++   
Sbjct: 132  PEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFQGEEVLSD 191

Query: 913  XXXXXXXXXSCYSTDDSYSEGLFSGLNEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 734
                     + +  + S      S + E S+RPGIVHRLDKGTSGLLVVAK E S A+L+
Sbjct: 192  VEDTSDDELNLFPANQSPYGVDSSVMREPSVRPGIVHRLDKGTSGLLVVAKTEQSLANLA 251

Query: 733  EQFKQHTIQRIYISLTCGVPSPASGRVDIPIGRDLNNRIRMAAVVGSGKCGKTRHAASRF 554
            EQFK+HTI+R+Y+S+TCGVP+  SGR+DIPIGRD NNRIRM A+ GS K G+ R+AASR+
Sbjct: 252  EQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMVAIPGSHKGGRARNAASRY 311

Query: 553  RVIEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALDRLQQKNSC 374
            +VIE LAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MAL  LQ K   
Sbjct: 312  KVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLQPKTPP 371

Query: 373  NLPGQLLQIISNLERPCLHALTLGFMHPHTGKEVHLSCLPPADFAEVLSGLRYVNTEKI 197
               G+L Q+IS +ERPCLHALTLGF HP+TG+ +H + LPPADFAEVLS LR ++TEK+
Sbjct: 372  RSHGKLSQLISGIERPCLHALTLGFKHPYTGENIHFTRLPPADFAEVLSELRAISTEKV 430


>CDP07347.1 unnamed protein product [Coffea canephora]
          Length = 442

 Score =  524 bits (1350), Expect = 0.0
 Identities = 265/412 (64%), Positives = 319/412 (77%), Gaps = 7/412 (1%)
 Frame = -2

Query: 1408 PTSTNSRVSWLLVRACSNST-------ADTRRNNYAGVELEESVNDVNSSKLRLDTWISS 1250
            P S  S    + V+AC+ S        +D R  N++GV+L+E+V DV S KLRLD+W+SS
Sbjct: 27   PLSVISLSRLVNVKACTTSAGGNPQPISDRRTINFSGVKLQETV-DVKSEKLRLDSWVSS 85

Query: 1249 RINGISRARVQSTIKSGLVTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQPEDIPLNI 1070
            RI+GISRARVQS+I+SGLV+VNGR I+KVSH VR GDKV+CTISELQQL+A+PEDIPL+I
Sbjct: 86   RIHGISRARVQSSIRSGLVSVNGRIINKVSHMVRGGDKVNCTISELQQLRAEPEDIPLDI 145

Query: 1069 VYEDDHLLVVNKPAHMVVHPAPGNATGTLVNGILHHCCLPMASLPIVDIPXXXXXXXXXX 890
            VYEDDHLLVVNKPAHMVVHPAPGN +GTLVNGILHHC LPM SL   ++           
Sbjct: 146  VYEDDHLLVVNKPAHMVVHPAPGNTSGTLVNGILHHCSLPMLSLASEEVHLEPEDASDDE 205

Query: 889  XSCYSTDDSYSEGLFSGLNEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTI 710
               +      + G  S  +EASIRPGIVHRLDKGTSGLLVVAKDEHSH+HL+EQFK  TI
Sbjct: 206  FIAFPRAPKDNGGASSRTSEASIRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKNRTI 265

Query: 709  QRIYISLTCGVPSPASGRVDIPIGRDLNNRIRMAAVVGSGKCGKTRHAASRFRVIEILAG 530
            +R+Y+SLTCGVPSP SGRVDIP+GRD NNRIRMA   GS    KTR+AASR+ V+E+LAG
Sbjct: 266  KRVYVSLTCGVPSPVSGRVDIPVGRDSNNRIRMAVFDGSTHSQKTRNAASRYSVVEVLAG 325

Query: 529  GGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALDRLQQKNSCNLPGQLLQ 350
            GGSALVEW+LETGRTHQIR HAKY+G+PL+GDE+YGGTK MAL  LQ +   +    L Q
Sbjct: 326  GGSALVEWKLETGRTHQIRVHAKYMGVPLMGDELYGGTKGMALSLLQPRTPSSFRENLQQ 385

Query: 349  IISNLERPCLHALTLGFMHPHTGKEVHLSCLPPADFAEVLSGLRYVNTEKIA 194
            +I  LERPCLHAL+LGF HP+T + +H S +PPADFAE+L+ LR +  EK++
Sbjct: 386  LICKLERPCLHALSLGFTHPYTLENMHFSQMPPADFAEILTQLRDIRAEKVS 437


>EOY15125.1 Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  523 bits (1348), Expect = 0.0
 Identities = 265/389 (68%), Positives = 307/389 (78%), Gaps = 1/389 (0%)
 Frame = -2

Query: 1363 CSNSTADTRRNNYAGVELEESVNDVNSSKLRLDTWISSRINGISRARVQSTIKSGLVTVN 1184
            C+  T +  R +Y GV+LEE+V+     KLRLD+WISSRI GISRARVQS+IKSGLVTVN
Sbjct: 51   CAAKTQEPIRTSYTGVQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVN 110

Query: 1183 GRTIHKVSHKVRSGDKVSCTISELQQLKAQPEDIPLNIVYEDDHLLVVNKPAHMVVHPAP 1004
            GR + KVSH +R GDKV+C ISELQ L+A+PEDIPL+IVYEDDH+LVVNKP HMVVHPAP
Sbjct: 111  GRVVDKVSHGLRHGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAP 170

Query: 1003 GNATGTLVNGILHHCCLPMASLPIVDIPXXXXXXXXXXXSCYSTDDSYSEGLFSGLNEA- 827
            GNATGTLVNGILHHC LP  +L   ++               S DD   EG   G + A 
Sbjct: 171  GNATGTLVNGILHHCSLPTVALSEKEVLSDTEDV--------SDDD---EGFCYGASAAA 219

Query: 826  SIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIQRIYISLTCGVPSPASGRVDI 647
            S+RPGIVHRLDKGTSGLLVVAKDEHSH+HLSEQFKQHTIQR+YISLTCGVPSP++GRVDI
Sbjct: 220  SVRPGIVHRLDKGTSGLLVVAKDEHSHSHLSEQFKQHTIQRVYISLTCGVPSPSAGRVDI 279

Query: 646  PIGRDLNNRIRMAAVVGSGKCGKTRHAASRFRVIEILAGGGSALVEWRLETGRTHQIRAH 467
             IGRD NNR+RM AV G    G+ RHAASR++VIE+LAGGGSAL++WRLETGRTHQIRAH
Sbjct: 280  SIGRDSNNRVRMIAVPGLNHHGRARHAASRYKVIEVLAGGGSALIQWRLETGRTHQIRAH 339

Query: 466  AKYLGIPLLGDEVYGGTKSMALDRLQQKNSCNLPGQLLQIISNLERPCLHALTLGFMHPH 287
            AKY+GIPLLGDEVYGGTKSMAL  L+ +   N   QL +++S LERP LHAL LGF HPH
Sbjct: 340  AKYMGIPLLGDEVYGGTKSMALSLLRPRTPPNYNDQLSRLVSRLERPYLHALVLGFEHPH 399

Query: 286  TGKEVHLSCLPPADFAEVLSGLRYVNTEK 200
            + + +H SC PP DFAE+LS LR + TEK
Sbjct: 400  SREMMHFSCQPPPDFAEILSDLRKIGTEK 428


>XP_007017900.2 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Theobroma
            cacao]
          Length = 463

 Score =  523 bits (1348), Expect = 0.0
 Identities = 265/389 (68%), Positives = 307/389 (78%), Gaps = 1/389 (0%)
 Frame = -2

Query: 1363 CSNSTADTRRNNYAGVELEESVNDVNSSKLRLDTWISSRINGISRARVQSTIKSGLVTVN 1184
            C+  T +  R +Y GV+LEE+V+     KLRLD+WISSRI GISRARVQS+IKSGLVTVN
Sbjct: 81   CAAKTQEPIRTSYTGVQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVN 140

Query: 1183 GRTIHKVSHKVRSGDKVSCTISELQQLKAQPEDIPLNIVYEDDHLLVVNKPAHMVVHPAP 1004
            GR + KVSH +R GDKV+C ISELQ L+A+PEDIPL+IVYEDDH+LVVNKP HMVVHPAP
Sbjct: 141  GRVVDKVSHGLRHGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAP 200

Query: 1003 GNATGTLVNGILHHCCLPMASLPIVDIPXXXXXXXXXXXSCYSTDDSYSEGLFSGLNEA- 827
            GNATGTLVNGILHHC LP  +L   ++               S DD   EG   G + A 
Sbjct: 201  GNATGTLVNGILHHCSLPTVALSEKEVLSDTEDV--------SDDD---EGFCYGASAAA 249

Query: 826  SIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIQRIYISLTCGVPSPASGRVDI 647
            S+RPGIVHRLDKGTSGLLVVAKDEHSH+HLSEQFKQHTIQR+YISLTCGVPSP++GRVDI
Sbjct: 250  SVRPGIVHRLDKGTSGLLVVAKDEHSHSHLSEQFKQHTIQRVYISLTCGVPSPSAGRVDI 309

Query: 646  PIGRDLNNRIRMAAVVGSGKCGKTRHAASRFRVIEILAGGGSALVEWRLETGRTHQIRAH 467
             IGRD NNR+RM AV G    G+ RHAASR++VIE+LAGGGSAL++WRLETGRTHQIRAH
Sbjct: 310  SIGRDSNNRVRMIAVPGLNHHGRARHAASRYKVIEVLAGGGSALIQWRLETGRTHQIRAH 369

Query: 466  AKYLGIPLLGDEVYGGTKSMALDRLQQKNSCNLPGQLLQIISNLERPCLHALTLGFMHPH 287
            AKY+GIPLLGDEVYGGTKSMAL  L+ +   N   QL +++S LERP LHAL LGF HPH
Sbjct: 370  AKYMGIPLLGDEVYGGTKSMALSLLRPRTPPNYNDQLSRLVSRLERPYLHALVLGFEHPH 429

Query: 286  TGKEVHLSCLPPADFAEVLSGLRYVNTEK 200
            + + +H SC PP DFAE+LS LR + TEK
Sbjct: 430  SREMMHFSCQPPPDFAEILSDLRKIGTEK 458


>XP_019244906.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Nicotiana attenuata]
          Length = 446

 Score =  520 bits (1339), Expect = e-180
 Identities = 272/430 (63%), Positives = 329/430 (76%), Gaps = 18/430 (4%)
 Frame = -2

Query: 1417 PRNPTSTN-SRVSWLLVRACSNSTADT-----------RRNNYAGVELEESVNDVNSSKL 1274
            P+NP   + SRVS  +VRA S    D+           RR+NY+GV+LEE+V DV + KL
Sbjct: 13   PQNPKPFSFSRVSSFIVRAFSKFPGDSDSDDSPDEIQSRRSNYSGVKLEETV-DVKTGKL 71

Query: 1273 RLDTWISSRINGISRARVQSTIKSGLVTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQ 1094
            RLD+W+SSRINGISRARVQS+I+SGLV+VNGR   KVSH V+ GDKV+CTI++L+ L+A+
Sbjct: 72   RLDSWVSSRINGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCTIADLKPLRAE 131

Query: 1093 PEDIPLNIVYEDDHLLVVNKPAHMVVHPAPGNATGTLVNGILHHCCLPMASLPIVDIPXX 914
            PEDIPL+IVYEDDH+LVVNKPAHMVVHPAPGNATGTLV+GILHHC LP  S    ++   
Sbjct: 132  PEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFQGEEVLSD 191

Query: 913  XXXXXXXXXSCYSTDDSYSEGLFSGLNEASIRPGIVHRLDKGTSGLLVVAK------DEH 752
                     + +  + S      S + E S+RPGIVHRLDKGTSGLLVVAK       E 
Sbjct: 192  VEDTSDDELNLFPANQSPYGVDSSVMREPSVRPGIVHRLDKGTSGLLVVAKVVPVLQTEQ 251

Query: 751  SHAHLSEQFKQHTIQRIYISLTCGVPSPASGRVDIPIGRDLNNRIRMAAVVGSGKCGKTR 572
            S A+L+EQFK+HTI+R+Y+S+TCGVP+  SGR+DIPIGRD NNRIRM A+ GS K G+ R
Sbjct: 252  SLANLAEQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMVAIPGSHKGGRAR 311

Query: 571  HAASRFRVIEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALDRL 392
            +AASR++VIE LAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTK+MAL  L
Sbjct: 312  NAASRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLL 371

Query: 391  QQKNSCNLPGQLLQIISNLERPCLHALTLGFMHPHTGKEVHLSCLPPADFAEVLSGLRYV 212
            Q K      G+L Q+IS +ERPCLHALTLGF HP+TG+ +H + LPPADFAEVLS LR +
Sbjct: 372  QPKTPPRSHGKLSQLISGIERPCLHALTLGFKHPYTGENIHFTRLPPADFAEVLSELRAI 431

Query: 211  NTEKIANMEK 182
            +TEK+  + K
Sbjct: 432  STEKVTRLHK 441


>OMO87357.1 hypothetical protein CCACVL1_09113 [Corchorus capsularis]
          Length = 432

 Score =  519 bits (1336), Expect = e-179
 Identities = 264/393 (67%), Positives = 308/393 (78%), Gaps = 5/393 (1%)
 Frame = -2

Query: 1363 CSNSTA----DTRRNNYAGVELEESVNDVNSSKLRLDTWISSRINGISRARVQSTIKSGL 1196
            CS+S A    +  R +YAGV+LEE+V++    KLRLD+WISSRI GISRARVQS+IKSGL
Sbjct: 47   CSSSAAAKSQEPIRTSYAGVQLEETVDETKQGKLRLDSWISSRIQGISRARVQSSIKSGL 106

Query: 1195 VTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQPEDIPLNIVYEDDHLLVVNKPAHMVV 1016
            VTVNGR + KVSH +R+GDKV+C ISELQ L+A+PEDIPL+IVYEDDH+LVVNKP HMVV
Sbjct: 107  VTVNGRVVDKVSHGLRAGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVV 166

Query: 1015 HPAPGNATGTLVNGILHHCCLPMASLPIVDIPXXXXXXXXXXXSCYSTDDSYSEGLFSGL 836
            HPAPGNATGTLVNGILHHC LP  +L   ++               + D S  EG   G 
Sbjct: 167  HPAPGNATGTLVNGILHHCSLPTVALSEKELLSD------------TEDGSDDEGFPYGE 214

Query: 835  NEAS-IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIQRIYISLTCGVPSPASG 659
            N A+ IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIQR+YISLTCGVPSP++G
Sbjct: 215  NAAAAIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIQRVYISLTCGVPSPSAG 274

Query: 658  RVDIPIGRDLNNRIRMAAVVGSGKCGKTRHAASRFRVIEILAGGGSALVEWRLETGRTHQ 479
            RVDIPIGRD NNR+RM AV G    G+ RHAASR++VIE+LAGGGSALV+WRLETGRTHQ
Sbjct: 275  RVDIPIGRDSNNRVRMVAVPGISHPGRARHAASRYKVIEVLAGGGSALVQWRLETGRTHQ 334

Query: 478  IRAHAKYLGIPLLGDEVYGGTKSMALDRLQQKNSCNLPGQLLQIISNLERPCLHALTLGF 299
            IRAHAKY+GIPLLGDEVYGGTK+M L  L+ +   +   QL +++S LERP LHAL LGF
Sbjct: 335  IRAHAKYMGIPLLGDEVYGGTKNMVLSLLRPRTPPSYNDQLSRLVSRLERPYLHALVLGF 394

Query: 298  MHPHTGKEVHLSCLPPADFAEVLSGLRYVNTEK 200
             HP + + +H SC PP DF  +LS LR +  EK
Sbjct: 395  QHPQSSENMHFSCPPPPDFTGILSQLRKIGVEK 427


>XP_004238386.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Solanum lycopersicum]
          Length = 436

 Score =  519 bits (1336), Expect = e-179
 Identities = 263/421 (62%), Positives = 328/421 (77%), Gaps = 12/421 (2%)
 Frame = -2

Query: 1417 PRNPTSTN-SRVSWLLVRACSNSTADT-----------RRNNYAGVELEESVNDVNSSKL 1274
            P+NP   + SRVS  + RA +    D+           RR+NY+GV+LEE+V D  + KL
Sbjct: 13   PQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETV-DSKTGKL 71

Query: 1273 RLDTWISSRINGISRARVQSTIKSGLVTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQ 1094
            RLD+W+SSRI+G+SRARVQS+I+SGLV+VNGR   KVSH V+ GDKV CTI++L+ L+A+
Sbjct: 72   RLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAE 131

Query: 1093 PEDIPLNIVYEDDHLLVVNKPAHMVVHPAPGNATGTLVNGILHHCCLPMASLPIVDIPXX 914
            PEDIPL+IVYED+H+LVVNKPAHMVVHPAPGNATGTLV+GILHHC LP  S P  ++   
Sbjct: 132  PEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLSD 191

Query: 913  XXXXXXXXXSCYSTDDSYSEGLFSGLNEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 734
                     + +S + S +    S + E+S+RPGIVHRLDKGTSGLLVVAK+EHS A L+
Sbjct: 192  GEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLADLA 251

Query: 733  EQFKQHTIQRIYISLTCGVPSPASGRVDIPIGRDLNNRIRMAAVVGSGKCGKTRHAASRF 554
            EQFK+HTI+R+Y+S+TCGVP+  +GRVDIPIGRD NNRIRMAA+ G+ K GK+RHA SR+
Sbjct: 252  EQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRY 311

Query: 553  RVIEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALDRLQQKNSC 374
            +VIE LAGGGSALVEWRLETGRTHQIRAHAK+LGIPL+GDEVYGGTK+MAL  LQ K   
Sbjct: 312  KVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQPKTPP 371

Query: 373  NLPGQLLQIISNLERPCLHALTLGFMHPHTGKEVHLSCLPPADFAEVLSGLRYVNTEKIA 194
               G+L Q++S ++RPCLHALTLGF HP TG+ +H + LPP DFAE+LS LR + TEK+ 
Sbjct: 372  MFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAIKTEKVT 431

Query: 193  N 191
            +
Sbjct: 432  H 432


>XP_010320443.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Solanum lycopersicum]
          Length = 431

 Score =  518 bits (1335), Expect = e-179
 Identities = 263/419 (62%), Positives = 327/419 (78%), Gaps = 12/419 (2%)
 Frame = -2

Query: 1417 PRNPTSTN-SRVSWLLVRACSNSTADT-----------RRNNYAGVELEESVNDVNSSKL 1274
            P+NP   + SRVS  + RA +    D+           RR+NY+GV+LEE+V D  + KL
Sbjct: 13   PQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETV-DSKTGKL 71

Query: 1273 RLDTWISSRINGISRARVQSTIKSGLVTVNGRTIHKVSHKVRSGDKVSCTISELQQLKAQ 1094
            RLD+W+SSRI+G+SRARVQS+I+SGLV+VNGR   KVSH V+ GDKV CTI++L+ L+A+
Sbjct: 72   RLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAE 131

Query: 1093 PEDIPLNIVYEDDHLLVVNKPAHMVVHPAPGNATGTLVNGILHHCCLPMASLPIVDIPXX 914
            PEDIPL+IVYED+H+LVVNKPAHMVVHPAPGNATGTLV+GILHHC LP  S P  ++   
Sbjct: 132  PEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLSD 191

Query: 913  XXXXXXXXXSCYSTDDSYSEGLFSGLNEASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 734
                     + +S + S +    S + E+S+RPGIVHRLDKGTSGLLVVAK+EHS A L+
Sbjct: 192  GEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLADLA 251

Query: 733  EQFKQHTIQRIYISLTCGVPSPASGRVDIPIGRDLNNRIRMAAVVGSGKCGKTRHAASRF 554
            EQFK+HTI+R+Y+S+TCGVP+  +GRVDIPIGRD NNRIRMAA+ G+ K GK+RHA SR+
Sbjct: 252  EQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRY 311

Query: 553  RVIEILAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALDRLQQKNSC 374
            +VIE LAGGGSALVEWRLETGRTHQIRAHAK+LGIPL+GDEVYGGTK+MAL  LQ K   
Sbjct: 312  KVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQPKTPP 371

Query: 373  NLPGQLLQIISNLERPCLHALTLGFMHPHTGKEVHLSCLPPADFAEVLSGLRYVNTEKI 197
               G+L Q++S ++RPCLHALTLGF HP TG+ +H + LPP DFAE+LS LR + TEK+
Sbjct: 372  MFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAIKTEKV 430


>XP_010241328.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 471

 Score =  520 bits (1338), Expect = e-179
 Identities = 259/387 (66%), Positives = 307/387 (79%)
 Frame = -2

Query: 1357 NSTADTRRNNYAGVELEESVNDVNSSKLRLDTWISSRINGISRARVQSTIKSGLVTVNGR 1178
            +S    RR N+AGV LE++V +++S K R+D+WISSRI GISRARVQS+IKSGLV+VNGR
Sbjct: 55   SSEPQNRRGNFAGVCLEDTV-EISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGR 113

Query: 1177 TIHKVSHKVRSGDKVSCTISELQQLKAQPEDIPLNIVYEDDHLLVVNKPAHMVVHPAPGN 998
             I KVSH +R+GDKV+CTI ELQ L+A+PEDIPL+IVYED+ +LVVNKPAHMVVHPAPGN
Sbjct: 114  IIDKVSHVIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGN 173

Query: 997  ATGTLVNGILHHCCLPMASLPIVDIPXXXXXXXXXXXSCYSTDDSYSEGLFSGLNEASIR 818
            A GTLVNGILHHC LPM +L    +              +S+     E + S + E S+R
Sbjct: 174  ANGTLVNGILHHCSLPMVALTNSKVLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVR 233

Query: 817  PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKQHTIQRIYISLTCGVPSPASGRVDIPIG 638
            PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFK HTI RIY+SLTCGVPS  SGR+++PIG
Sbjct: 234  PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIG 293

Query: 637  RDLNNRIRMAAVVGSGKCGKTRHAASRFRVIEILAGGGSALVEWRLETGRTHQIRAHAKY 458
            RDL+NRIRMAAV       + RHAASR+RV+E+LAGGGSALVEWRLETGRTHQIRAHAKY
Sbjct: 294  RDLSNRIRMAAVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKY 353

Query: 457  LGIPLLGDEVYGGTKSMALDRLQQKNSCNLPGQLLQIISNLERPCLHALTLGFMHPHTGK 278
            LGIPLLGDEVYGGT++MAL  L+ ++  +  G L Q++S L+RPCLHA TLGF HPHTG+
Sbjct: 354  LGIPLLGDEVYGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGE 413

Query: 277  EVHLSCLPPADFAEVLSGLRYVNTEKI 197
             +  SC PPADF EVLS LR +  EK+
Sbjct: 414  NMQFSCPPPADFTEVLSQLRSIGIEKV 440