BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00016597
         (3167 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008810490.1| PREDICTED: MMS19 nucleotide excision repair ...  1069   0.0  
ref|XP_010915290.1| PREDICTED: MMS19 nucleotide excision repair ...  1062   0.0  
ref|XP_010915313.1| PREDICTED: MMS19 nucleotide excision repair ...  1044   0.0  
ref|XP_010249497.1| PREDICTED: MMS19 nucleotide excision repair ...   964   0.0  
ref|XP_009416475.1| PREDICTED: MMS19 nucleotide excision repair ...   929   0.0  
emb|CBI36057.3| unnamed protein product [Vitis vinifera]              892   0.0  
gb|KJB68183.1| hypothetical protein B456_010G230600 [Gossypium r...   837   0.0  
ref|XP_012451235.1| PREDICTED: MMS19 nucleotide excision repair ...   837   0.0  
ref|XP_012451236.1| PREDICTED: MMS19 nucleotide excision repair ...   837   0.0  
ref|XP_012451237.1| PREDICTED: MMS19 nucleotide excision repair ...   832   0.0  
ref|XP_006465695.1| PREDICTED: MMS19 nucleotide excision repair ...   831   0.0  
gb|KDO51789.1| hypothetical protein CISIN_1g001284mg [Citrus sin...   828   0.0  
ref|XP_006465694.1| PREDICTED: MMS19 nucleotide excision repair ...   827   0.0  
ref|XP_007024310.1| MMS19 nucleotide excision repair protein, pu...   825   0.0  
gb|KDO51790.1| hypothetical protein CISIN_1g001284mg [Citrus sin...   824   0.0  
ref|XP_006426876.1| hypothetical protein CICLE_v10024743mg [Citr...   818   0.0  
ref|XP_008228424.1| PREDICTED: MMS19 nucleotide excision repair ...   812   0.0  
gb|KHG04543.1| MMS19 nucleotide excision repair [Gossypium arbor...   803   0.0  
ref|XP_006853692.2| PREDICTED: MMS19 nucleotide excision repair ...   799   0.0  
gb|ERN15159.1| hypothetical protein AMTR_s00056p00136660 [Ambore...   799   0.0  

>ref|XP_008810490.1| PREDICTED: MMS19 nucleotide excision repair protein homolog [Phoenix
            dactylifera]
          Length = 1153

 Score = 1069 bits (2764), Expect = 0.0
 Identities = 579/1047 (55%), Positives = 727/1047 (69%), Gaps = 16/1047 (1%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LALLRRK NVGMV  SEA+ LAE+YL +V+ QSLAVHDRKLCFEVLQCLL+AYPEA+  L
Sbjct: 110  LALLRRKKNVGMVKSSEARALAESYLTNVQVQSLAVHDRKLCFEVLQCLLEAYPEAVEML 169

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             D+L+ GI +AID EKDPRCLMLTFH+ E L ++FPD S   ASFA +LF+IL RYFPIY
Sbjct: 170  GDDLVYGICEAIDEEKDPRCLMLTFHLVEILARVFPDSSGAVASFAGDLFDILSRYFPIY 229

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTH RSDDF+I R+DLSRALM+AFCSTP FE FAI                   KYL+NC
Sbjct: 230  FTHPRSDDFDITREDLSRALMHAFCSTPFFEPFAIPLLLEKLSSSLPLAKLDSLKYLNNC 289

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
            I HYG D M KHA AIWS LKD IF+ S   T+  STSE+A + ES+E QI KEAL CLQ
Sbjct: 290  IQHYGTDRMIKHAGAIWSNLKDAIFNHSPHKTLS-STSEAAGNTESEENQIAKEALICLQ 348

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
             AI  L+    +P +SLI++D+DIE  F  V  E   +GIS ES RQ           SK
Sbjct: 349  TAILHLDSLEKDPILSLIVEDEDIEMKFGLVSNEGTCTGISIESRRQLSAVGNILSVSSK 408

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNM--GCKTFSNI--LNFGALYLCVELLASCRDLT 2100
             S   C+RVFQK F  LM++L VS S+   GC T +    LNFGALYLC++LLASCR+LT
Sbjct: 409  ASMSGCTRVFQKFFPHLMNILEVSASSSSYGCNTKNRTSSLNFGALYLCIQLLASCRELT 468

Query: 2099 MVAQDLSPQVP---DNWWYLLKDFSGPLTYAFRSALV----NPDIVRNAGPEYMTCVVKG 1941
            + +QD SPQV    D WW +L+ FSGPL +A  SALV    +  +  N G E+    VKG
Sbjct: 469  LTSQDFSPQVTTVQDIWWSMLQHFSGPLVHALGSALVAVGSSELVSNNTGHEHAIYEVKG 528

Query: 1940 LQVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIERFHDS 1761
            LQV A FPG +  +SE++YE IL +L+S++T   +D FLW+ +++ L++IG  IE+ HDS
Sbjct: 529  LQVLAMFPGCYLPISEDVYEYILVILVSMVTERFEDTFLWKLSVKALIEIGSFIEKHHDS 588

Query: 1760 EKEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEAIFSNF 1581
             +   +++ V+ER             LALKL+AIS+IGT G D+MS VI  LEEAI S F
Sbjct: 589  YRGISFNRIVVERIVSLFQHDDSTMPLALKLDAISEIGTIGVDYMSRVIRLLEEAILSKF 648

Query: 1580 SVACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNGVLSVE 1401
               CV G    AEILVPLLECYSN++L WC+  G  D+V+M+FA+ IW+ ME   +   +
Sbjct: 649  LAVCVEGCLEAAEILVPLLECYSNRVLAWCYTSGNFDEVAMRFALCIWDQMESITIFDKD 708

Query: 1400 LQKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLDPLLFPLSNLEALQS 1221
            ++ + LLD  MM MKL V  C EE+Q  +V+KAY++L  T FL  + L F  S LE LQ 
Sbjct: 709  VKLKDLLDRVMMTMKLLVWGCVEESQSLIVRKAYSVLLSTTFLSEESLSFSPSKLEGLQL 768

Query: 1220 VPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGCLPAAQALASMI 1041
             PD+  LS +DEW++SLFAS+V+AL P  PLPDV  +  + T FLLKG LPAAQALASM+
Sbjct: 769  TPDLVNLSWRDEWIVSLFASVVMALLPQTPLPDVKLLSNMLTTFLLKGHLPAAQALASMV 828

Query: 1040 NKWPADLNRTELSSSYKLEDAIEVILE-SLLAVFSSSPLEECKIVNSTDGSFNC----SS 876
            NKW  +++++E+SS+Y L++AIE+ILE SLL++ SSS L +  ++NS +   +C    + 
Sbjct: 829  NKWHVNIDKSEVSSAYTLDEAIEMILERSLLSIQSSSNLGKSDLLNSGERMLSCLCLLNK 888

Query: 875  PSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITTVSTDESEIGNYQD 696
             SS   +A+VG AWIGK LLMRGHE+V+EIAM LLKYLLS  N    + +D S  G+  D
Sbjct: 889  NSSFQNNAVVGLAWIGKGLLMRGHEKVKEIAMLLLKYLLS--NPYKELHSDVSGSGDGLD 946

Query: 695  MHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPVLLXXXXXXXXXST 516
            +H+ L  +AADAFH++LSDSE CLNKKFHATIRPLYKQRFFSSMMPVLL         S 
Sbjct: 947  VHTSLATSAADAFHVILSDSEVCLNKKFHATIRPLYKQRFFSSMMPVLLSSIKQSRSLSM 1006

Query: 515  RAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEMTYNLLLVLSGILM 336
            R  L RA  H+  D PLAA+VAEAKK++P L++  + LS ++L+K++ Y+LLLVLSGILM
Sbjct: 1007 RVALCRAFAHVISDAPLAAVVAEAKKIVPSLMDSFAMLSEDVLNKDLIYSLLLVLSGILM 1066

Query: 335  DENGKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPHTRIYPMRPQVLRA 156
            D+NGKEAI+EN             YPHMMLVRETAIQCL A+S LPH RIYPMRPQVLRA
Sbjct: 1067 DDNGKEAIVENINTVISHLIRLIFYPHMMLVRETAIQCLVAMSGLPHARIYPMRPQVLRA 1126

Query: 155  LVMSLDDRKRVVRQEAVRCRQAWASIA 75
            +  +LDD+KR VRQEAVRCRQAW S+A
Sbjct: 1127 VSKALDDQKRAVRQEAVRCRQAWVSMA 1153


>ref|XP_010915290.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
            X1 [Elaeis guineensis] gi|743756137|ref|XP_010915298.1|
            PREDICTED: MMS19 nucleotide excision repair protein
            homolog isoform X1 [Elaeis guineensis]
            gi|743756139|ref|XP_010915305.1| PREDICTED: MMS19
            nucleotide excision repair protein homolog isoform X1
            [Elaeis guineensis]
          Length = 1078

 Score = 1062 bits (2746), Expect = 0.0
 Identities = 577/1047 (55%), Positives = 720/1047 (68%), Gaps = 16/1047 (1%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LALLRRK NVGMV  SEA+ +AE+YL +V+ QSLAVHDRKLCFEVLQCLL+ YPEA+  L
Sbjct: 35   LALLRRKKNVGMVKSSEARAVAESYLMNVQVQSLAVHDRKLCFEVLQCLLEVYPEAVEML 94

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             D+L+ GI +AID EKDPRCLMLTFH+ E L ++FPD S   ASFA +LF+IL RYFPIY
Sbjct: 95   GDDLVYGICEAIDEEKDPRCLMLTFHLVEILARVFPDSSGSVASFAGDLFDILSRYFPIY 154

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTH RSDD +I R++LS ALM+AFCSTP FE FAI                   KYL+NC
Sbjct: 155  FTHPRSDDLDITREELSMALMHAFCSTPFFEPFAIPLLLEKLSSSLPLAKLDSLKYLNNC 214

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
            I HYG D M KHAKAIWS LKDVI + S   T+  STSE A +MES+E QI KEAL CLQ
Sbjct: 215  IQHYGTDRMIKHAKAIWSNLKDVILNHSPHKTLF-STSELAGNMESEENQIAKEALICLQ 273

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
             AI  L+     P +S I++D+DIE  F  V  E   +GIS ES R            SK
Sbjct: 274  TAILHLDSLEKNPILSFIVEDEDIEMKFGLVSNEGTGTGISIESRRHLSAVGNILSVSSK 333

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNM--GCKTFSNI--LNFGALYLCVELLASCRDLT 2100
             S   C+RVFQK F RLM++L +S S+   GC T +    LNFGALYLC++LLAS R+L 
Sbjct: 334  ASMSGCTRVFQKFFPRLMNILEISASSSSNGCNTNNGTSSLNFGALYLCIQLLASFRELI 393

Query: 2099 MVAQDLSPQV---PDNWWYLLKDFSGPLTYAFRSALVNPD----IVRNAGPEYMTCVVKG 1941
            + +QD SPQV    D WW +L+ FSGPL +A  SAL+       +  N G E+    VKG
Sbjct: 394  LTSQDFSPQVITVQDGWWCMLQHFSGPLAHALGSALMGARSSELVNNNTGHEHAIYEVKG 453

Query: 1940 LQVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIERFHDS 1761
            LQV ATFPG +   SE++YE IL + MS+ T   +D FLW+ +++ L++IG  IE++HDS
Sbjct: 454  LQVLATFPGCYLPTSEDVYEYILVIFMSIATERFEDAFLWKLSVKALIEIGSFIEKYHDS 513

Query: 1760 EKEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEAIFSNF 1581
             +   +++ V+ER             LALKL+AIS+IGT G D+MS VI  LEEAI S F
Sbjct: 514  YRGISFNRIVVERIVSLFQQDDSTMPLALKLDAISEIGTIGVDYMSRVIKLLEEAILSKF 573

Query: 1580 SVACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNGVLSVE 1401
               CV G    AEILVPLLECYSN++L WC+  G  D+V+MQFA+ IWN ME   +   +
Sbjct: 574  LAVCVEGRLEAAEILVPLLECYSNRVLLWCYTSGNFDEVAMQFALCIWNQMESITIFDKD 633

Query: 1400 LQKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLDPLLFPLSNLEALQS 1221
             + Q L D  M  MKL VG C EENQ  +V+KAY++L  T+FL  + L F  S LE LQ 
Sbjct: 634  AKIQDLFDRMMTTMKLLVGGCAEENQSLIVRKAYSVLLSTSFLSEESLPFSSSKLEGLQV 693

Query: 1220 VPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGCLPAAQALASMI 1041
             PD+  LS +DEW++SLFAS+VIAL P  PLPDV  ++ + T FLLKG LPAAQALASM+
Sbjct: 694  TPDLVNLSWRDEWIVSLFASVVIALLPQTPLPDVKLLLNVLTTFLLKGHLPAAQALASMV 753

Query: 1040 NKWPADLNRTELSSSYKLEDAIEVILE-SLLAVFSSSPLEECKIVNSTDGSFNC----SS 876
            NKW  +++++E+ ++Y L++AIE+ILE SLL+V SSS L +  ++N  +   +C    ++
Sbjct: 754  NKWHVNIDKSEVPNAYTLDEAIEMILERSLLSVQSSSNLGKSDLLNKDERMLSCLCLLNN 813

Query: 875  PSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITTVSTDESEIGNYQD 696
             SS   +A+VG AWIGK LLMRGHE+V+EIAM LL+YLLS  N    + +D S  G+  D
Sbjct: 814  NSSFQSNAVVGLAWIGKGLLMRGHEKVKEIAMLLLQYLLS--NPYKELHSDASGSGDSLD 871

Query: 695  MHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPVLLXXXXXXXXXST 516
            +H+ L  +AADAFH++LSDSE CLNK FHA IRPLYKQRFFSSMMPVLL         S 
Sbjct: 872  VHTSLATSAADAFHVILSDSEVCLNKNFHAMIRPLYKQRFFSSMMPVLLSSIKQSCSSSM 931

Query: 515  RAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEMTYNLLLVLSGILM 336
            R  LYRA  H+  D PLAA+VAEAKK++P L++ L+ LS ++L+K++ Y+LLLVLSGILM
Sbjct: 932  RVALYRAFAHVISDAPLAAVVAEAKKILPSLMDSLAMLSEDVLNKDLIYSLLLVLSGILM 991

Query: 335  DENGKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPHTRIYPMRPQVLRA 156
            D+NGKEAIIEN             YPHMMLVRETAIQCL A+SALPH RIYPMRPQVLRA
Sbjct: 992  DDNGKEAIIENINTVISDLIRLIFYPHMMLVRETAIQCLVAMSALPHARIYPMRPQVLRA 1051

Query: 155  LVMSLDDRKRVVRQEAVRCRQAWASIA 75
            +  +LDDRKRVVRQEAVRCRQAW S+A
Sbjct: 1052 VSKALDDRKRVVRQEAVRCRQAWVSMA 1078


>ref|XP_010915313.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
            X2 [Elaeis guineensis]
          Length = 1033

 Score = 1044 bits (2699), Expect = 0.0
 Identities = 567/1036 (54%), Positives = 710/1036 (68%), Gaps = 16/1036 (1%)
 Frame = -1

Query: 3134 MVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAALADELICGILDA 2955
            MV  SEA+ +AE+YL +V+ QSLAVHDRKLCFEVLQCLL+ YPEA+  L D+L+ GI +A
Sbjct: 1    MVKSSEARAVAESYLMNVQVQSLAVHDRKLCFEVLQCLLEVYPEAVEMLGDDLVYGICEA 60

Query: 2954 IDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIYFTHQRSDDFEI 2775
            ID EKDPRCLMLTFH+ E L ++FPD S   ASFA +LF+IL RYFPIYFTH RSDD +I
Sbjct: 61   IDEEKDPRCLMLTFHLVEILARVFPDSSGSVASFAGDLFDILSRYFPIYFTHPRSDDLDI 120

Query: 2774 KRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNCILHYGADTMFK 2595
             R++LS ALM+AFCSTP FE FAI                   KYL+NCI HYG D M K
Sbjct: 121  TREELSMALMHAFCSTPFFEPFAIPLLLEKLSSSLPLAKLDSLKYLNNCIQHYGTDRMIK 180

Query: 2594 HAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQMAISQLNCPNS 2415
            HAKAIWS LKDVI + S   T+  STSE A +MES+E QI KEAL CLQ AI  L+    
Sbjct: 181  HAKAIWSNLKDVILNHSPHKTLF-STSELAGNMESEENQIAKEALICLQTAILHLDSLEK 239

Query: 2414 EPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSKVSTDCCSRVFQ 2235
             P +S I++D+DIE  F  V  E   +GIS ES R            SK S   C+RVFQ
Sbjct: 240  NPILSFIVEDEDIEMKFGLVSNEGTGTGISIESRRHLSAVGNILSVSSKASMSGCTRVFQ 299

Query: 2234 KLFLRLMSVLGVSMSNM--GCKTFSNI--LNFGALYLCVELLASCRDLTMVAQDLSPQV- 2070
            K F RLM++L +S S+   GC T +    LNFGALYLC++LLAS R+L + +QD SPQV 
Sbjct: 300  KFFPRLMNILEISASSSSNGCNTNNGTSSLNFGALYLCIQLLASFRELILTSQDFSPQVI 359

Query: 2069 --PDNWWYLLKDFSGPLTYAFRSALVNPD----IVRNAGPEYMTCVVKGLQVFATFPGRF 1908
               D WW +L+ FSGPL +A  SAL+       +  N G E+    VKGLQV ATFPG +
Sbjct: 360  TVQDGWWCMLQHFSGPLAHALGSALMGARSSELVNNNTGHEHAIYEVKGLQVLATFPGCY 419

Query: 1907 SLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIERFHDSEKEKRYSKFVI 1728
               SE++YE IL + MS+ T   +D FLW+ +++ L++IG  IE++HDS +   +++ V+
Sbjct: 420  LPTSEDVYEYILVIFMSIATERFEDAFLWKLSVKALIEIGSFIEKYHDSYRGISFNRIVV 479

Query: 1727 ERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEAIFSNFSVACVNGSPGV 1548
            ER             LALKL+AIS+IGT G D+MS VI  LEEAI S F   CV G    
Sbjct: 480  ERIVSLFQQDDSTMPLALKLDAISEIGTIGVDYMSRVIKLLEEAILSKFLAVCVEGRLEA 539

Query: 1547 AEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNGVLSVELQKQGLLDTTM 1368
            AEILVPLLECYSN++L WC+  G  D+V+MQFA+ IWN ME   +   + + Q L D  M
Sbjct: 540  AEILVPLLECYSNRVLLWCYTSGNFDEVAMQFALCIWNQMESITIFDKDAKIQDLFDRMM 599

Query: 1367 MAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLDPLLFPLSNLEALQSVPDMSGLSCKD 1188
              MKL VG C EENQ  +V+KAY++L  T+FL  + L F  S LE LQ  PD+  LS +D
Sbjct: 600  TTMKLLVGGCAEENQSLIVRKAYSVLLSTSFLSEESLPFSSSKLEGLQVTPDLVNLSWRD 659

Query: 1187 EWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGCLPAAQALASMINKWPADLNRTE 1008
            EW++SLFAS+VIAL P  PLPDV  ++ + T FLLKG LPAAQALASM+NKW  +++++E
Sbjct: 660  EWIVSLFASVVIALLPQTPLPDVKLLLNVLTTFLLKGHLPAAQALASMVNKWHVNIDKSE 719

Query: 1007 LSSSYKLEDAIEVILE-SLLAVFSSSPLEECKIVNSTDGSFNC----SSPSSLHIHAIVG 843
            + ++Y L++AIE+ILE SLL+V SSS L +  ++N  +   +C    ++ SS   +A+VG
Sbjct: 720  VPNAYTLDEAIEMILERSLLSVQSSSNLGKSDLLNKDERMLSCLCLLNNNSSFQSNAVVG 779

Query: 842  SAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITTVSTDESEIGNYQDMHSLLTRAAAD 663
             AWIGK LLMRGHE+V+EIAM LL+YLLS  N    + +D S  G+  D+H+ L  +AAD
Sbjct: 780  LAWIGKGLLMRGHEKVKEIAMLLLQYLLS--NPYKELHSDASGSGDSLDVHTSLATSAAD 837

Query: 662  AFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPVLLXXXXXXXXXSTRAVLYRALGHI 483
            AFH++LSDSE CLNK FHA IRPLYKQRFFSSMMPVLL         S R  LYRA  H+
Sbjct: 838  AFHVILSDSEVCLNKNFHAMIRPLYKQRFFSSMMPVLLSSIKQSCSSSMRVALYRAFAHV 897

Query: 482  FFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEMTYNLLLVLSGILMDENGKEAIIEN 303
              D PLAA+VAEAKK++P L++ L+ LS ++L+K++ Y+LLLVLSGILMD+NGKEAIIEN
Sbjct: 898  ISDAPLAAVVAEAKKILPSLMDSLAMLSEDVLNKDLIYSLLLVLSGILMDDNGKEAIIEN 957

Query: 302  AXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPHTRIYPMRPQVLRALVMSLDDRKRV 123
                         YPHMMLVRETAIQCL A+SALPH RIYPMRPQVLRA+  +LDDRKRV
Sbjct: 958  INTVISDLIRLIFYPHMMLVRETAIQCLVAMSALPHARIYPMRPQVLRAVSKALDDRKRV 1017

Query: 122  VRQEAVRCRQAWASIA 75
            VRQEAVRCRQAW S+A
Sbjct: 1018 VRQEAVRCRQAWVSMA 1033


>ref|XP_010249497.1| PREDICTED: MMS19 nucleotide excision repair protein homolog [Nelumbo
            nucifera] gi|719979495|ref|XP_010249498.1| PREDICTED:
            MMS19 nucleotide excision repair protein homolog [Nelumbo
            nucifera]
          Length = 1160

 Score =  964 bits (2493), Expect = 0.0
 Identities = 524/1057 (49%), Positives = 697/1057 (65%), Gaps = 20/1057 (1%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LALLRRKS+VGMV+ S+A+++ ++YL +++ QSLA HDR LCFE+L+CLLD Y +A+AAL
Sbjct: 110  LALLRRKSSVGMVSGSDARLVGQSYLQNLQVQSLAQHDRMLCFELLECLLDRYSDAVAAL 169

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             D+L+ GI +AIDGEKDPRCLMLTFH+ E L  +FP+ S   ASFA ++FEILG YFPI+
Sbjct: 170  GDDLVYGICEAIDGEKDPRCLMLTFHLVEVLAWLFPEPSGPLASFAGDIFEILGCYFPIH 229

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTHQ+ DDF+IKRDDLSRALM AF S+P FE FAI                   +YLS+C
Sbjct: 230  FTHQQGDDFDIKRDDLSRALMLAFSSSPLFEPFAIPLLLEKLSSSLPLAKVDSFRYLSHC 289

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
            +L YG D M KHAKAIWS LKD IF  S+QG I    S+    M  +E  I KEAL CL+
Sbjct: 290  VLKYGVDRMGKHAKAIWSSLKDAIFTFSLQGNIFSLASDLPDTMGFEENDITKEALICLE 349

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
              I Q    N   F+SLI+DD+D+E    SV +   Y+ +S ES ++           +K
Sbjct: 350  KVILQ----NDGIFLSLIVDDEDVEMILRSVTISNSYNSLSVESKQKLLAFGRIIVVSAK 405

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNM-------GCKTFSNILNFGALYLCVELLASCR 2109
            +S+  C R+F  LF RLM +LG+S S++       G       LNFGA+YLC ELLA+CR
Sbjct: 406  ISSSSCDRIFHFLFPRLMDILGLSSSSLSLECIPYGSPVSFGQLNFGAIYLCTELLAACR 465

Query: 2108 DLTMVAQDLSPQ---VPDNWWYLLKDFSGPLTYAFRSALVNPDIVRNAGPEYMTCVVKGL 1938
            DL + ++D++PQ   +  +W  LL+ FSGPLT    S+LV      N      + V KGL
Sbjct: 466  DLIVGSEDIAPQSVLMQVSWCCLLQRFSGPLTTFLSSSLVTSMKQENCDANIYSGV-KGL 524

Query: 1937 QVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIERFHDSE 1758
            +  ATFPG F  +S+ I+E+IL V MS++T   ++  LW+ +L+ LVQIG   E+FHDSE
Sbjct: 525  RTLATFPGWFLPISKSIFENILTVFMSILTAGCEETLLWKLSLKALVQIGTFTEKFHDSE 584

Query: 1757 KEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEAIFSNFS 1578
            +   Y   V+ +              +LKL+AI++IG +G  FM  VI GLEEAI +NF 
Sbjct: 585  RATSYMNIVVGKIVSSISLDDSSMPYSLKLDAIAEIGGSGMHFMLKVIQGLEEAISANFF 644

Query: 1577 VACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNGVLSVEL 1398
             A   G+    E+L+PLLEC+S ++LPW H     + +   F ++IWN ME N   ++ +
Sbjct: 645  EASSKGNLKSVEVLIPLLECFSKKVLPWFHKTSLFEDIVFHFVINIWNQMEANTTFNIGI 704

Query: 1397 QKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLD---PLLFPLSNLEAL 1227
            +   LLD TMM M+ AV  C+E+NQ  +VQKAYNILS +    L    PL  PL   E L
Sbjct: 705  KANELLDVTMMVMRQAVADCSEKNQGLIVQKAYNILSSSASFSLKEPMPLSIPLKT-EGL 763

Query: 1226 QSVPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGCLPAAQALAS 1047
            Q   ++   SC+DEWLISLFAS+++ALRP   LPDV  V+ LF   +LKG +PAAQAL S
Sbjct: 764  QLTQNLQDFSCRDEWLISLFASVIMALRPQTCLPDVRVVLELFMSVVLKGHVPAAQALGS 823

Query: 1046 MINKWPADLNRTELSSSYKLEDAIEVILE-SLLAVFSSSPLEECKIV-----NSTDGSFN 885
            +INK PA ++  E+S +  LE+A+ +I + +L +V  +S   +C ++     N TD   +
Sbjct: 824  IINKLPATIDSVEVSRACTLEEAMVIISKMNLWSVNGNSSFRKCNVICKSVENLTDLDIS 883

Query: 884  CSSPSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQN-KITTVSTDESEIG 708
             ++ + +  + +VG AWIGK LLMRGHE+V++I M LL+ LLS+ N ++  +    S   
Sbjct: 884  ANNNAMVQTNVLVGLAWIGKGLLMRGHEKVKDITMTLLRCLLSTINTELLPIQHGLSGND 943

Query: 707  NYQDMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPVLLXXXXXXX 528
            + QDMH L+ ++AADAFHIL+SDSE CLNK+FHAT+RPLYKQ FFS MMP+LL       
Sbjct: 944  SGQDMHPLVMKSAADAFHILMSDSEICLNKRFHATVRPLYKQHFFSIMMPILLSSITGSD 1003

Query: 527  XXSTRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEMTYNLLLVLS 348
               TR+ LYRA GH+  +TPL A++ E KK+IP LL+ L+  S++ILDK++TY+LLLV+S
Sbjct: 1004 SSITRSFLYRAFGHVISNTPLVAVITECKKLIPVLLDSLAVSSVDILDKDLTYSLLLVIS 1063

Query: 347  GILMDENGKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPHTRIYPMRPQ 168
            GI+MDENG+EA+ ENA           SYPHMMLVRETAIQCL A+S LPH RIYPMR Q
Sbjct: 1064 GIIMDENGREAVTENAHIIINCLVGLLSYPHMMLVRETAIQCLVAMSGLPHVRIYPMRTQ 1123

Query: 167  VLRALVMSLDDRKRVVRQEAVRCRQAWASIASRSLHF 57
            VLRA+  +LDD KRVVRQEAVRCRQAWAS+ASRSL+F
Sbjct: 1124 VLRAISKALDDPKRVVRQEAVRCRQAWASMASRSLYF 1160


>ref|XP_009416475.1| PREDICTED: MMS19 nucleotide excision repair protein homolog [Musa
            acuminata subsp. malaccensis]
          Length = 1122

 Score =  929 bits (2401), Expect = 0.0
 Identities = 529/1037 (51%), Positives = 676/1037 (65%), Gaps = 10/1037 (0%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LALL+R    GMV  ++AK LAE++L +V+ QSLAV DRKLCFEV+Q LLD YP+A+  L
Sbjct: 110  LALLKRTKKFGMVESNDAKSLAESFLRNVQVQSLAVRDRKLCFEVIQRLLDVYPQAVVEL 169

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             D+L+ GI +AID EKDPRCLMLTF +  TL ++FPD S    +F+S++F+IL RYFPIY
Sbjct: 170  GDDLVYGICEAIDEEKDPRCLMLTFSLVGTLGRLFPDPSGPMGNFSSDVFDILSRYFPIY 229

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTH + D  +I RDDLS+ALM+AF S+P FE F I                   KYL++C
Sbjct: 230  FTHSKGDGLDITRDDLSKALMDAFSSSPLFEPFVIPLLLEKLSSSLPSAKLDSLKYLNSC 289

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
            + HY AD + KH++ IWS LKDVIF+LS   +   ST  S  DM+S+  QI  EAL CLQ
Sbjct: 290  LRHYEADKVVKHSQVIWSNLKDVIFNLSPHRSSL-STYGSNGDMDSEVNQIADEALNCLQ 348

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
             AIS LN P+ + F+ LI+DD+DI   F SV   + YSG S E H Q           SK
Sbjct: 349  TAISHLNFPDQDSFLCLIIDDEDIGTRFWSVTSIKKYSGTSTEIHCQLSALGSILSIASK 408

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNMG--CKTFSNI----LNFGALYLCVELLASCRD 2106
            VS  CC++VFQK F  LM +LGVS  +    C T  N     LNFGALYL +ELL SCR+
Sbjct: 409  VSIYCCTKVFQKFFSCLMDILGVSGKHPSKLCVTDHNTCSDGLNFGALYLSMELLTSCRE 468

Query: 2105 LTMVAQDLSPQV---PDNWWYLLKDFSGPLTYAFRSALVNPDIVRNAGPEYMTCVVKGLQ 1935
            LT+ +++ SP+V   P + +Y+LK+ S  L  A  S L  P+       E++ C VKGLQ
Sbjct: 469  LTLSSKEFSPEVISEPRSSFYVLKNISRELCDALGSILETPE-----SEEHVYCAVKGLQ 523

Query: 1934 VFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIERFHDSEK 1755
            V ATFP  +S VSE  YEDIL +LMS+I   S + +LW  +L+ LVQIGL IE  HDS K
Sbjct: 524  VLATFPEIYSPVSEATYEDILVMLMSIIARRSKETYLWELSLKALVQIGLWIENAHDSAK 583

Query: 1754 EKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEAIFSNFSV 1575
               Y+K VI+R             L+LKL AIS+I + G  ++  ++   EEAI SN   
Sbjct: 584  ATSYNKLVIQRIVSMLQSNDSTISLSLKLVAISEISSIGL-YLLRIVQAFEEAIVSNLR- 641

Query: 1574 ACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNGVLSVELQ 1395
            AC  G+   +++LVPLL+CYSNQ+LP CH  G  + +++Q AVSIWN +E   V    + 
Sbjct: 642  ACFEGNLKSSDVLVPLLQCYSNQVLPRCHTCGNFNDIAVQVAVSIWNQIENVAVFRSSIL 701

Query: 1394 KQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLDPLLFPLSNLEALQSVP 1215
             + +LD  MM MK  V  CTEE+Q  ++QKAY  L +T F+  +PL   LS LE LQ + 
Sbjct: 702  MKDVLDQVMMTMKHLVAGCTEESQFLILQKAYGSLPKTFFIA-EPLPCALSQLEGLQCIQ 760

Query: 1214 DMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGCLPAAQALASMINK 1035
            D + +SC+DEW+ SLF S+VIALRP  PL +V  ++ LF V LLKG + AAQALASM+NK
Sbjct: 761  DTTLMSCRDEWIFSLFGSVVIALRPQTPLVNVKILLNLFVVLLLKGNMLAAQALASMVNK 820

Query: 1034 WPADLNRTELSSSYKLEDAIEVILESLLAVFSSSPLEECKIVNSTDGSFNCSSPSSLHIH 855
            WPAD+N++E+S  Y L+ AIE IL+S L    SS        N  D        S  H +
Sbjct: 821  WPADVNKSEIS--YSLDQAIEEILKSCLWTSESSS-------NFIDRD------SCFHKN 865

Query: 854  AIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQN-KITTVSTDESEIGNYQDMHSLLT 678
             ++G AWIGK LLMRGHE+++EIAM LLK L++ +   IT     E+     QD  S L 
Sbjct: 866  VVLGLAWIGKGLLMRGHEKLKEIAMLLLKCLVAGKYVDITPFQQHENGKDAGQDASSPLA 925

Query: 677  RAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPVLLXXXXXXXXXSTRAVLYR 498
              AADAFH+ LSDSE CLNKKFHATIRPLYKQRFFSSM+P+LL         S + VLYR
Sbjct: 926  TFAADAFHVFLSDSEDCLNKKFHATIRPLYKQRFFSSMLPILLSSIKESDPSSKKVVLYR 985

Query: 497  ALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEMTYNLLLVLSGILMDENGKE 318
            A GH+  DTPLAA+V EAKK++P L + L+ LSL+IL+K++ Y+LLLV+SGILMD NGK 
Sbjct: 986  AFGHVISDTPLAAVVGEAKKIVPTLADALAMLSLDILNKDLIYSLLLVVSGILMDNNGKA 1045

Query: 317  AIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPHTRIYPMRPQVLRALVMSLD 138
             ++EN            SYPH+M+VRETAIQCL A+SALP+ RIYP RPQVLRA+  +LD
Sbjct: 1046 IVLENVHTIISLLIKLISYPHLMIVRETAIQCLVAISALPYARIYPYRPQVLRAVSTALD 1105

Query: 137  DRKRVVRQEAVRCRQAW 87
            DRKRVVRQEAVRCRQAW
Sbjct: 1106 DRKRVVRQEAVRCRQAW 1122


>emb|CBI36057.3| unnamed protein product [Vitis vinifera]
          Length = 1146

 Score =  892 bits (2306), Expect = 0.0
 Identities = 510/1058 (48%), Positives = 676/1058 (63%), Gaps = 21/1058 (1%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LAL++RKSN+G VT ++A+ +A+ YL +V+ QSL  HDRKLCFE+L+CLLD YPE++A+L
Sbjct: 110  LALMKRKSNMGRVTDNDARAVAQAYLENVQVQSLGQHDRKLCFEILECLLDHYPESVASL 169

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             D+L+ GI  AIDGEKDPRCLMLTFHI E L ++FPD S   ASFA +LF+ILG YFPI+
Sbjct: 170  GDDLVYGICGAIDGEKDPRCLMLTFHIVEILARLFPDPSGPLASFAGDLFDILGCYFPIH 229

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTH + +D ++KRDDLSRALM AF ST  FE FAI                   KYLSNC
Sbjct: 230  FTHPQGEDVDVKRDDLSRALMLAFSSTTLFEPFAIPLLLEKLSSSLPLAKVDSLKYLSNC 289

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
            +L YG D M KH +AIW  +KD IF  S Q  +    SE    +  +E +I+ EA+  LQ
Sbjct: 290  LLKYGDDRMTKHVEAIWFSVKDAIF-CSEQEPMLSLASELLDHVGFQENEIVTEAIILLQ 348

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
              I +    NS   +SLI+ D+DI     +V   R Y+ I  +S  +           +K
Sbjct: 349  KVILE----NSGLSLSLIVGDKDINTIVNTVTSFRSYNDIPLQSKHKLCAIGRILYVSAK 404

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNMGCK-------TFSNILNFGALYLCVELLASCR 2109
             S  CC+RVF+  F RLM  LG+S+ N            FS  LNFGALYLC+ELLA+CR
Sbjct: 405  ASITCCNRVFESFFFRLMDTLGLSVRNSSGDCLPNFDYVFSERLNFGALYLCIELLAACR 464

Query: 2108 DLTMVAQDL---SPQVPDNWWYLLKDFSGPLTYAFRSALVNPDIVRNAGPEYMTCVVKGL 1938
            DL + +++L   S    ++W  +L  FS  L  AF S L +    ++A    +   VKGL
Sbjct: 465  DLVVGSEELTSKSVSAQESWCCMLHSFSSLLMKAFSSVL-DASTDKDAYEADIYSGVKGL 523

Query: 1937 QVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIERFHDSE 1758
            Q+ ATFPG F  +S+ I+E++L   +S+I    +   LW+ AL+ LVQIG  I+RFH+SE
Sbjct: 524  QILATFPGEFLPISKSIFENVLLTFISIIVEDFNKTLLWKLALKALVQIGSFIDRFHESE 583

Query: 1757 KEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEAIFSNFS 1578
            K   Y+  V+E+               L+LEAIS IGT G + M  ++ GLE+AIF+N S
Sbjct: 584  KALSYNYIVVEKIVSLMFLDDFGLPFQLRLEAISDIGTTGLNVMLKIVQGLEDAIFANLS 643

Query: 1577 VACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNGVLSVEL 1398
               V+G+   A+I V LLECYSN+LLP  H  G  + V  +FAV+IWN +E +   SV  
Sbjct: 644  EVYVHGNLKSAKIAVQLLECYSNKLLPGIHGAGDFEDVLSRFAVNIWNQIENSMAFSVGA 703

Query: 1397 QKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRT-NFLQLDPLLFPLSN---LEA 1230
            Q+  LL+ TM AMKLAVG C+E +Q  +++KAY++LS   +F  ++ +  P++    LE 
Sbjct: 704  QENELLNATMTAMKLAVGSCSEGSQGKIIKKAYSVLSSCPSFTLMESM--PITGTVQLEG 761

Query: 1229 LQSVPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGCLPAAQALA 1050
            LQ   D+   SC+D+W+ISLFAS +IA+RP   +P++  V+ LF   LLKG +PAAQAL 
Sbjct: 762  LQHTQDLECFSCRDKWVISLFASAIIAVRPQTHIPNIRVVLHLFMTNLLKGHVPAAQALG 821

Query: 1049 SMINKWPADLNRTELSSSYKLEDAIEVILE-SLLAVFSSSPLEECKI--VNSTDGSFN-C 882
            SM+NK     N  E+SS+  LEDA+++I   SL    +  PL+ C    V++  G  N C
Sbjct: 822  SMVNKLCPKSNGVEISSTCTLEDALDIIFNTSLWDSHNHGPLKRCSGIGVDNEMGLANLC 881

Query: 881  SSPSS---LHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITTVSTDESEI 711
             S S+   L + AI G AWIGK LL+RGHE+V++I M  L+ LLS  N+           
Sbjct: 882  LSASNCQLLQVCAIEGLAWIGKGLLLRGHEKVKDITMIFLRCLLSKNNQ----------- 930

Query: 710  GNYQDMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPVLLXXXXXX 531
               QD+   + ++AADAFH+L+SDSE CLNK+FHA IRPLYKQRFFSS++P+L+      
Sbjct: 931  --EQDVLPSVAKSAADAFHVLMSDSEICLNKRFHANIRPLYKQRFFSSVLPILVSSMAES 988

Query: 530  XXXSTRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEMTYNLLLVL 351
               +TR++LYRAL HI  DTPL A+++EAKK+IP LL+ LS LS   LDK++ YNLLLVL
Sbjct: 989  RLSNTRSMLYRALAHIISDTPLIAVLSEAKKIIPILLDSLSILSTYNLDKDILYNLLLVL 1048

Query: 350  SGILMDENGKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPHTRIYPMRP 171
            SGILMD+NG+E ++ENA            YPHMM+VRETAIQCL A+S LPH RIYPMR 
Sbjct: 1049 SGILMDKNGQETVVENAHVIINCLIGLVGYPHMMVVRETAIQCLVAMSRLPHARIYPMRT 1108

Query: 170  QVLRALVMSLDDRKRVVRQEAVRCRQAWASIASRSLHF 57
            QVLR++  +LDD KR VR EAVRCRQAWASIASRSLHF
Sbjct: 1109 QVLRSVQKALDDPKRAVRHEAVRCRQAWASIASRSLHF 1146


>gb|KJB68183.1| hypothetical protein B456_010G230600 [Gossypium raimondii]
          Length = 1063

 Score =  837 bits (2161), Expect = 0.0
 Identities = 476/1058 (44%), Positives = 661/1058 (62%), Gaps = 21/1058 (1%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LAL+RRKS+ GMV+ S+AK +AE+YL +++ QSL   +RKL FE+++CLL+ YP A+A+L
Sbjct: 21   LALMRRKSSGGMVSGSDAKAVAESYLQNLQVQSLGQFERKLSFELMECLLERYPNAVASL 80

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             D LI GI +++DGEKDP CLMLTFHI E L+++FPD S   A FA ELFEILG YFPI+
Sbjct: 81   GDTLIYGICESVDGEKDPHCLMLTFHIIEVLSRLFPDPSDALAGFAHELFEILGCYFPIH 140

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTHQ+ +D  IKRDDL+RALM AF STP FE +AI                   +YL++C
Sbjct: 141  FTHQKDEDMTIKRDDLARALMLAFSSTPLFEPYAIPLLLEKLSSSLPSAKLDSLRYLTDC 200

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
             + YGAD M KH +AIWS LK+ IF +S+   +   T ES    +  + +I  EAL+ LQ
Sbjct: 201  TMKYGADRMAKHIEAIWSSLKEAIF-ISLDSVLL-FTPESLEGPDLPKNEIAAEALSLLQ 258

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
              I Q    N++ F+ LI+ D+DI   F ++   + Y  I  E  ++           +K
Sbjct: 259  KLIVQ----NTKLFLDLIVGDEDISMIFNTISNYKNYHEIPLERKQRLNAVGRILFTTAK 314

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNMGCKTF-------SNILNFGALYLCVELLASCR 2109
             S   C+RVF+  F RLM +LG+S  N   + +       S   N GALYL +E+L++CR
Sbjct: 315  ASQVSCNRVFECFFSRLMDILGLSARNSSGQPYFDESILISKRCNHGALYLSIEILSACR 374

Query: 2108 DLTMVAQDL---SPQVPDNWWYLLKDFSGPLTYAFRSALVNPDIVRNAGPEYMTCVVKGL 1938
            D+   ++ +   +    + W YLL+ FS  LT  F SA +      +    Y+   VKGL
Sbjct: 375  DMIASSETILAATSHTEETWKYLLQSFSPALTMGFCSAFICSSEGTHDAATYIG--VKGL 432

Query: 1937 QVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIERFHDSE 1758
             + ATFPG +SL+S+ ++E IL + +S+I      R  W+ AL+ L +IG  IER+H+SE
Sbjct: 433  LILATFPGGYSLISKTVFEKILVMFVSIINEEYSKRLSWKLALKALGEIGSFIERYHESE 492

Query: 1757 KEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEAIFSNFS 1578
            KE  Y   V+E+               L+LEA+S IGT+G  +M  V+ GLEEAI++N  
Sbjct: 493  KEPSYMDIVVEKILSLAFVGDFGIPFPLRLEALSDIGTSGRSYMLKVVQGLEEAIYANLY 552

Query: 1577 VACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNGVLSV-E 1401
               V+GS   AEI+  +L+CYS++++PW H     ++V +QFA++IWN +E +   +  +
Sbjct: 553  EVYVHGSTSSAEIVTHILKCYSDKVIPWVHCEKGFEEVLLQFAINIWNQIENSTHFNASQ 612

Query: 1400 LQKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLDPLLFPLSNLEALQS 1221
              K+G+LD  M AMKLAV  C+EE Q  +VQK+YNILS +    L+ LL      E  Q 
Sbjct: 613  TNKKGVLDVMMKAMKLAVANCSEEKQNIIVQKSYNILSSSISFPLEELLLQ----ERFQI 668

Query: 1220 VPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGCLPAAQALASMI 1041
              ++   S +DEW++SLFA++ IA+ P   +P+  +++ LF   LLKG + AAQAL SM+
Sbjct: 669  AQEVDNSSSRDEWILSLFAAVTIAVHPQTHIPNTRSIVSLFMTTLLKGNVVAAQALGSMV 728

Query: 1040 NKWPADLNRTELSSSYKLEDAIEVILESLLAVF--SSSPLEECKIVNSTDGSFN-----C 882
            NK      R + SS   LE+A+++IL   L +F  +SS   + K ++  D   N      
Sbjct: 729  NKLDLKSTRGQTSSDCTLEEAMDIILNLSLWIFDTNSSSSIQSKTISVHDTGLNDLSNGV 788

Query: 881  SSPSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITTVSTDESEI--G 708
             S +SL IHAI+G AWIGK LLMRGHE+V +I M  L+ L SS      +S  E  I   
Sbjct: 789  GSCNSLQIHAILGLAWIGKGLLMRGHEKVNDITMVFLRCLQSSGR--AGISHQEKSISEN 846

Query: 707  NYQ-DMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPVLLXXXXXX 531
            NY+ D+H+ + + AADAF IL+ D E CLN++FHA IRPLYKQRFFS++MPV L      
Sbjct: 847  NYKLDLHNSVMKTAADAFQILIGDCEQCLNREFHAIIRPLYKQRFFSTIMPV-LQSLVMK 905

Query: 530  XXXSTRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEMTYNLLLVL 351
                +R+ L+RA  H+  DTPL  ++++ KKVIP LL+GLS LS +++DK++ Y LLLVL
Sbjct: 906  LEPLSRSFLFRASAHVIIDTPLIVVLSDTKKVIPMLLDGLSVLSNDVVDKDVLYGLLLVL 965

Query: 350  SGILMDENGKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPHTRIYPMRP 171
            SGILMD+NG+EA+ ++A            YPHM LVRETA+QCL A+S L H RIYPMR 
Sbjct: 966  SGILMDKNGQEAVSDSAHTVVNCLVDLTRYPHMTLVRETAMQCLIAISGLSHARIYPMRT 1025

Query: 170  QVLRALVMSLDDRKRVVRQEAVRCRQAWASIASRSLHF 57
            QVL+A++ +LDD KR VR+EAVRCRQAWASIASRSLHF
Sbjct: 1026 QVLQAVIKALDDPKRAVRREAVRCRQAWASIASRSLHF 1063


>ref|XP_012451235.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
            X1 [Gossypium raimondii] gi|763801227|gb|KJB68182.1|
            hypothetical protein B456_010G230600 [Gossypium
            raimondii]
          Length = 1152

 Score =  837 bits (2161), Expect = 0.0
 Identities = 476/1058 (44%), Positives = 661/1058 (62%), Gaps = 21/1058 (1%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LAL+RRKS+ GMV+ S+AK +AE+YL +++ QSL   +RKL FE+++CLL+ YP A+A+L
Sbjct: 110  LALMRRKSSGGMVSGSDAKAVAESYLQNLQVQSLGQFERKLSFELMECLLERYPNAVASL 169

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             D LI GI +++DGEKDP CLMLTFHI E L+++FPD S   A FA ELFEILG YFPI+
Sbjct: 170  GDTLIYGICESVDGEKDPHCLMLTFHIIEVLSRLFPDPSDALAGFAHELFEILGCYFPIH 229

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTHQ+ +D  IKRDDL+RALM AF STP FE +AI                   +YL++C
Sbjct: 230  FTHQKDEDMTIKRDDLARALMLAFSSTPLFEPYAIPLLLEKLSSSLPSAKLDSLRYLTDC 289

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
             + YGAD M KH +AIWS LK+ IF +S+   +   T ES    +  + +I  EAL+ LQ
Sbjct: 290  TMKYGADRMAKHIEAIWSSLKEAIF-ISLDSVLL-FTPESLEGPDLPKNEIAAEALSLLQ 347

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
              I Q    N++ F+ LI+ D+DI   F ++   + Y  I  E  ++           +K
Sbjct: 348  KLIVQ----NTKLFLDLIVGDEDISMIFNTISNYKNYHEIPLERKQRLNAVGRILFTTAK 403

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNMGCKTF-------SNILNFGALYLCVELLASCR 2109
             S   C+RVF+  F RLM +LG+S  N   + +       S   N GALYL +E+L++CR
Sbjct: 404  ASQVSCNRVFECFFSRLMDILGLSARNSSGQPYFDESILISKRCNHGALYLSIEILSACR 463

Query: 2108 DLTMVAQDL---SPQVPDNWWYLLKDFSGPLTYAFRSALVNPDIVRNAGPEYMTCVVKGL 1938
            D+   ++ +   +    + W YLL+ FS  LT  F SA +      +    Y+   VKGL
Sbjct: 464  DMIASSETILAATSHTEETWKYLLQSFSPALTMGFCSAFICSSEGTHDAATYIG--VKGL 521

Query: 1937 QVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIERFHDSE 1758
             + ATFPG +SL+S+ ++E IL + +S+I      R  W+ AL+ L +IG  IER+H+SE
Sbjct: 522  LILATFPGGYSLISKTVFEKILVMFVSIINEEYSKRLSWKLALKALGEIGSFIERYHESE 581

Query: 1757 KEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEAIFSNFS 1578
            KE  Y   V+E+               L+LEA+S IGT+G  +M  V+ GLEEAI++N  
Sbjct: 582  KEPSYMDIVVEKILSLAFVGDFGIPFPLRLEALSDIGTSGRSYMLKVVQGLEEAIYANLY 641

Query: 1577 VACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNGVLSV-E 1401
               V+GS   AEI+  +L+CYS++++PW H     ++V +QFA++IWN +E +   +  +
Sbjct: 642  EVYVHGSTSSAEIVTHILKCYSDKVIPWVHCEKGFEEVLLQFAINIWNQIENSTHFNASQ 701

Query: 1400 LQKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLDPLLFPLSNLEALQS 1221
              K+G+LD  M AMKLAV  C+EE Q  +VQK+YNILS +    L+ LL      E  Q 
Sbjct: 702  TNKKGVLDVMMKAMKLAVANCSEEKQNIIVQKSYNILSSSISFPLEELLLQ----ERFQI 757

Query: 1220 VPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGCLPAAQALASMI 1041
              ++   S +DEW++SLFA++ IA+ P   +P+  +++ LF   LLKG + AAQAL SM+
Sbjct: 758  AQEVDNSSSRDEWILSLFAAVTIAVHPQTHIPNTRSIVSLFMTTLLKGNVVAAQALGSMV 817

Query: 1040 NKWPADLNRTELSSSYKLEDAIEVILESLLAVF--SSSPLEECKIVNSTDGSFN-----C 882
            NK      R + SS   LE+A+++IL   L +F  +SS   + K ++  D   N      
Sbjct: 818  NKLDLKSTRGQTSSDCTLEEAMDIILNLSLWIFDTNSSSSIQSKTISVHDTGLNDLSNGV 877

Query: 881  SSPSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITTVSTDESEI--G 708
             S +SL IHAI+G AWIGK LLMRGHE+V +I M  L+ L SS      +S  E  I   
Sbjct: 878  GSCNSLQIHAILGLAWIGKGLLMRGHEKVNDITMVFLRCLQSSGR--AGISHQEKSISEN 935

Query: 707  NYQ-DMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPVLLXXXXXX 531
            NY+ D+H+ + + AADAF IL+ D E CLN++FHA IRPLYKQRFFS++MPV L      
Sbjct: 936  NYKLDLHNSVMKTAADAFQILIGDCEQCLNREFHAIIRPLYKQRFFSTIMPV-LQSLVMK 994

Query: 530  XXXSTRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEMTYNLLLVL 351
                +R+ L+RA  H+  DTPL  ++++ KKVIP LL+GLS LS +++DK++ Y LLLVL
Sbjct: 995  LEPLSRSFLFRASAHVIIDTPLIVVLSDTKKVIPMLLDGLSVLSNDVVDKDVLYGLLLVL 1054

Query: 350  SGILMDENGKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPHTRIYPMRP 171
            SGILMD+NG+EA+ ++A            YPHM LVRETA+QCL A+S L H RIYPMR 
Sbjct: 1055 SGILMDKNGQEAVSDSAHTVVNCLVDLTRYPHMTLVRETAMQCLIAISGLSHARIYPMRT 1114

Query: 170  QVLRALVMSLDDRKRVVRQEAVRCRQAWASIASRSLHF 57
            QVL+A++ +LDD KR VR+EAVRCRQAWASIASRSLHF
Sbjct: 1115 QVLQAVIKALDDPKRAVRREAVRCRQAWASIASRSLHF 1152


>ref|XP_012451236.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
            X2 [Gossypium raimondii] gi|763801226|gb|KJB68181.1|
            hypothetical protein B456_010G230600 [Gossypium
            raimondii]
          Length = 1104

 Score =  837 bits (2161), Expect = 0.0
 Identities = 476/1058 (44%), Positives = 661/1058 (62%), Gaps = 21/1058 (1%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LAL+RRKS+ GMV+ S+AK +AE+YL +++ QSL   +RKL FE+++CLL+ YP A+A+L
Sbjct: 62   LALMRRKSSGGMVSGSDAKAVAESYLQNLQVQSLGQFERKLSFELMECLLERYPNAVASL 121

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             D LI GI +++DGEKDP CLMLTFHI E L+++FPD S   A FA ELFEILG YFPI+
Sbjct: 122  GDTLIYGICESVDGEKDPHCLMLTFHIIEVLSRLFPDPSDALAGFAHELFEILGCYFPIH 181

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTHQ+ +D  IKRDDL+RALM AF STP FE +AI                   +YL++C
Sbjct: 182  FTHQKDEDMTIKRDDLARALMLAFSSTPLFEPYAIPLLLEKLSSSLPSAKLDSLRYLTDC 241

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
             + YGAD M KH +AIWS LK+ IF +S+   +   T ES    +  + +I  EAL+ LQ
Sbjct: 242  TMKYGADRMAKHIEAIWSSLKEAIF-ISLDSVLL-FTPESLEGPDLPKNEIAAEALSLLQ 299

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
              I Q    N++ F+ LI+ D+DI   F ++   + Y  I  E  ++           +K
Sbjct: 300  KLIVQ----NTKLFLDLIVGDEDISMIFNTISNYKNYHEIPLERKQRLNAVGRILFTTAK 355

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNMGCKTF-------SNILNFGALYLCVELLASCR 2109
             S   C+RVF+  F RLM +LG+S  N   + +       S   N GALYL +E+L++CR
Sbjct: 356  ASQVSCNRVFECFFSRLMDILGLSARNSSGQPYFDESILISKRCNHGALYLSIEILSACR 415

Query: 2108 DLTMVAQDL---SPQVPDNWWYLLKDFSGPLTYAFRSALVNPDIVRNAGPEYMTCVVKGL 1938
            D+   ++ +   +    + W YLL+ FS  LT  F SA +      +    Y+   VKGL
Sbjct: 416  DMIASSETILAATSHTEETWKYLLQSFSPALTMGFCSAFICSSEGTHDAATYIG--VKGL 473

Query: 1937 QVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIERFHDSE 1758
             + ATFPG +SL+S+ ++E IL + +S+I      R  W+ AL+ L +IG  IER+H+SE
Sbjct: 474  LILATFPGGYSLISKTVFEKILVMFVSIINEEYSKRLSWKLALKALGEIGSFIERYHESE 533

Query: 1757 KEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEAIFSNFS 1578
            KE  Y   V+E+               L+LEA+S IGT+G  +M  V+ GLEEAI++N  
Sbjct: 534  KEPSYMDIVVEKILSLAFVGDFGIPFPLRLEALSDIGTSGRSYMLKVVQGLEEAIYANLY 593

Query: 1577 VACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNGVLSV-E 1401
               V+GS   AEI+  +L+CYS++++PW H     ++V +QFA++IWN +E +   +  +
Sbjct: 594  EVYVHGSTSSAEIVTHILKCYSDKVIPWVHCEKGFEEVLLQFAINIWNQIENSTHFNASQ 653

Query: 1400 LQKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLDPLLFPLSNLEALQS 1221
              K+G+LD  M AMKLAV  C+EE Q  +VQK+YNILS +    L+ LL      E  Q 
Sbjct: 654  TNKKGVLDVMMKAMKLAVANCSEEKQNIIVQKSYNILSSSISFPLEELLLQ----ERFQI 709

Query: 1220 VPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGCLPAAQALASMI 1041
              ++   S +DEW++SLFA++ IA+ P   +P+  +++ LF   LLKG + AAQAL SM+
Sbjct: 710  AQEVDNSSSRDEWILSLFAAVTIAVHPQTHIPNTRSIVSLFMTTLLKGNVVAAQALGSMV 769

Query: 1040 NKWPADLNRTELSSSYKLEDAIEVILESLLAVF--SSSPLEECKIVNSTDGSFN-----C 882
            NK      R + SS   LE+A+++IL   L +F  +SS   + K ++  D   N      
Sbjct: 770  NKLDLKSTRGQTSSDCTLEEAMDIILNLSLWIFDTNSSSSIQSKTISVHDTGLNDLSNGV 829

Query: 881  SSPSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITTVSTDESEI--G 708
             S +SL IHAI+G AWIGK LLMRGHE+V +I M  L+ L SS      +S  E  I   
Sbjct: 830  GSCNSLQIHAILGLAWIGKGLLMRGHEKVNDITMVFLRCLQSSGR--AGISHQEKSISEN 887

Query: 707  NYQ-DMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPVLLXXXXXX 531
            NY+ D+H+ + + AADAF IL+ D E CLN++FHA IRPLYKQRFFS++MPV L      
Sbjct: 888  NYKLDLHNSVMKTAADAFQILIGDCEQCLNREFHAIIRPLYKQRFFSTIMPV-LQSLVMK 946

Query: 530  XXXSTRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEMTYNLLLVL 351
                +R+ L+RA  H+  DTPL  ++++ KKVIP LL+GLS LS +++DK++ Y LLLVL
Sbjct: 947  LEPLSRSFLFRASAHVIIDTPLIVVLSDTKKVIPMLLDGLSVLSNDVVDKDVLYGLLLVL 1006

Query: 350  SGILMDENGKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPHTRIYPMRP 171
            SGILMD+NG+EA+ ++A            YPHM LVRETA+QCL A+S L H RIYPMR 
Sbjct: 1007 SGILMDKNGQEAVSDSAHTVVNCLVDLTRYPHMTLVRETAMQCLIAISGLSHARIYPMRT 1066

Query: 170  QVLRALVMSLDDRKRVVRQEAVRCRQAWASIASRSLHF 57
            QVL+A++ +LDD KR VR+EAVRCRQAWASIASRSLHF
Sbjct: 1067 QVLQAVIKALDDPKRAVRREAVRCRQAWASIASRSLHF 1104


>ref|XP_012451237.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
            X3 [Gossypium raimondii]
          Length = 1040

 Score =  832 bits (2149), Expect = 0.0
 Identities = 473/1055 (44%), Positives = 658/1055 (62%), Gaps = 21/1055 (1%)
 Frame = -1

Query: 3158 LRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAALADE 2979
            +RRKS+ GMV+ S+AK +AE+YL +++ QSL   +RKL FE+++CLL+ YP A+A+L D 
Sbjct: 1    MRRKSSGGMVSGSDAKAVAESYLQNLQVQSLGQFERKLSFELMECLLERYPNAVASLGDT 60

Query: 2978 LICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIYFTH 2799
            LI GI +++DGEKDP CLMLTFHI E L+++FPD S   A FA ELFEILG YFPI+FTH
Sbjct: 61   LIYGICESVDGEKDPHCLMLTFHIIEVLSRLFPDPSDALAGFAHELFEILGCYFPIHFTH 120

Query: 2798 QRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNCILH 2619
            Q+ +D  IKRDDL+RALM AF STP FE +AI                   +YL++C + 
Sbjct: 121  QKDEDMTIKRDDLARALMLAFSSTPLFEPYAIPLLLEKLSSSLPSAKLDSLRYLTDCTMK 180

Query: 2618 YGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQMAI 2439
            YGAD M KH +AIWS LK+ IF +S+   +   T ES    +  + +I  EAL+ LQ  I
Sbjct: 181  YGADRMAKHIEAIWSSLKEAIF-ISLDSVLL-FTPESLEGPDLPKNEIAAEALSLLQKLI 238

Query: 2438 SQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSKVST 2259
             Q    N++ F+ LI+ D+DI   F ++   + Y  I  E  ++           +K S 
Sbjct: 239  VQ----NTKLFLDLIVGDEDISMIFNTISNYKNYHEIPLERKQRLNAVGRILFTTAKASQ 294

Query: 2258 DCCSRVFQKLFLRLMSVLGVSMSNMGCKTF-------SNILNFGALYLCVELLASCRDLT 2100
              C+RVF+  F RLM +LG+S  N   + +       S   N GALYL +E+L++CRD+ 
Sbjct: 295  VSCNRVFECFFSRLMDILGLSARNSSGQPYFDESILISKRCNHGALYLSIEILSACRDMI 354

Query: 2099 MVAQDL---SPQVPDNWWYLLKDFSGPLTYAFRSALVNPDIVRNAGPEYMTCVVKGLQVF 1929
              ++ +   +    + W YLL+ FS  LT  F SA +      +    Y+   VKGL + 
Sbjct: 355  ASSETILAATSHTEETWKYLLQSFSPALTMGFCSAFICSSEGTHDAATYIG--VKGLLIL 412

Query: 1928 ATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIERFHDSEKEK 1749
            ATFPG +SL+S+ ++E IL + +S+I      R  W+ AL+ L +IG  IER+H+SEKE 
Sbjct: 413  ATFPGGYSLISKTVFEKILVMFVSIINEEYSKRLSWKLALKALGEIGSFIERYHESEKEP 472

Query: 1748 RYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEAIFSNFSVAC 1569
             Y   V+E+               L+LEA+S IGT+G  +M  V+ GLEEAI++N     
Sbjct: 473  SYMDIVVEKILSLAFVGDFGIPFPLRLEALSDIGTSGRSYMLKVVQGLEEAIYANLYEVY 532

Query: 1568 VNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNGVLSV-ELQK 1392
            V+GS   AEI+  +L+CYS++++PW H     ++V +QFA++IWN +E +   +  +  K
Sbjct: 533  VHGSTSSAEIVTHILKCYSDKVIPWVHCEKGFEEVLLQFAINIWNQIENSTHFNASQTNK 592

Query: 1391 QGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLDPLLFPLSNLEALQSVPD 1212
            +G+LD  M AMKLAV  C+EE Q  +VQK+YNILS +    L+ LL      E  Q   +
Sbjct: 593  KGVLDVMMKAMKLAVANCSEEKQNIIVQKSYNILSSSISFPLEELLLQ----ERFQIAQE 648

Query: 1211 MSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGCLPAAQALASMINKW 1032
            +   S +DEW++SLFA++ IA+ P   +P+  +++ LF   LLKG + AAQAL SM+NK 
Sbjct: 649  VDNSSSRDEWILSLFAAVTIAVHPQTHIPNTRSIVSLFMTTLLKGNVVAAQALGSMVNKL 708

Query: 1031 PADLNRTELSSSYKLEDAIEVILESLLAVF--SSSPLEECKIVNSTDGSFN-----CSSP 873
                 R + SS   LE+A+++IL   L +F  +SS   + K ++  D   N       S 
Sbjct: 709  DLKSTRGQTSSDCTLEEAMDIILNLSLWIFDTNSSSSIQSKTISVHDTGLNDLSNGVGSC 768

Query: 872  SSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITTVSTDESEI--GNYQ 699
            +SL IHAI+G AWIGK LLMRGHE+V +I M  L+ L SS      +S  E  I   NY+
Sbjct: 769  NSLQIHAILGLAWIGKGLLMRGHEKVNDITMVFLRCLQSSGR--AGISHQEKSISENNYK 826

Query: 698  -DMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPVLLXXXXXXXXX 522
             D+H+ + + AADAF IL+ D E CLN++FHA IRPLYKQRFFS++MPV L         
Sbjct: 827  LDLHNSVMKTAADAFQILIGDCEQCLNREFHAIIRPLYKQRFFSTIMPV-LQSLVMKLEP 885

Query: 521  STRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEMTYNLLLVLSGI 342
             +R+ L+RA  H+  DTPL  ++++ KKVIP LL+GLS LS +++DK++ Y LLLVLSGI
Sbjct: 886  LSRSFLFRASAHVIIDTPLIVVLSDTKKVIPMLLDGLSVLSNDVVDKDVLYGLLLVLSGI 945

Query: 341  LMDENGKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPHTRIYPMRPQVL 162
            LMD+NG+EA+ ++A            YPHM LVRETA+QCL A+S L H RIYPMR QVL
Sbjct: 946  LMDKNGQEAVSDSAHTVVNCLVDLTRYPHMTLVRETAMQCLIAISGLSHARIYPMRTQVL 1005

Query: 161  RALVMSLDDRKRVVRQEAVRCRQAWASIASRSLHF 57
            +A++ +LDD KR VR+EAVRCRQAWASIASRSLHF
Sbjct: 1006 QAVIKALDDPKRAVRREAVRCRQAWASIASRSLHF 1040


>ref|XP_006465695.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
            X2 [Citrus sinensis]
          Length = 1151

 Score =  831 bits (2147), Expect = 0.0
 Identities = 484/1066 (45%), Positives = 663/1066 (62%), Gaps = 29/1066 (2%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LALLRRKS+ G++T ++AK +A++Y+ +++ QSLA HDRKLCFE+L+CLL  YP+A+ +L
Sbjct: 110  LALLRRKSSGGVITTNDAKAVAQSYIQNLQVQSLAQHDRKLCFELLECLLQRYPDAVVSL 169

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             ++L+  I +AIDGEKDP CLMLTFHI E   ++F D   L A+FAS+LFEILG YFPI+
Sbjct: 170  GEDLLYAICEAIDGEKDPHCLMLTFHIVEVAAELFSDD--LLANFASDLFEILGCYFPIH 227

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTH +++DF++KRDDLSRALM AF ST  FE FAI                   KYLS+C
Sbjct: 228  FTHSKAEDFDVKRDDLSRALMAAFSSTSLFEPFAIPLLLEKLSSSLQSAKVDSLKYLSHC 287

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
             + YGAD + KHAKA+WS +KD ++  S + T+    SES   +  +E  IL E+L  L 
Sbjct: 288  TVKYGADRIEKHAKAMWSSIKDAVYS-SHEPTLS-FASESLDGVGFRENVILTESLNLLD 345

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
                Q    NS  F+S I+ D+DI   F+S+   + Y  IS +S ++           +K
Sbjct: 346  TVFKQ----NSGLFLSWIIGDEDINLIFKSISSYKTYKEISLQSKQKLHAVGSILSVSAK 401

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNMGCKTFSNI-------LNFGALYLCVELLASCR 2109
             S   C+ V +  F  LM  LG+S+ N     F N        LN GALYLC+EL+ +CR
Sbjct: 402  ASPAACNSVMESFFPCLMHALGLSVGNSTQDCFPNDGNVLRGKLNHGALYLCIELMTACR 461

Query: 2108 DLTMVAQDL-SPQVPDN--WWYLLKDFSGPLTYAFRSAL---VNPDIVRNAGPEYMTCV- 1950
            +L   +++  S   P N  W+ LL+ +S  L  A RS L    N D        Y T V 
Sbjct: 462  ELMASSEEFKSVAAPANERWYCLLQSYSASLAKALRSTLETSANED-------SYETNVY 514

Query: 1949 --VKGLQVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIE 1776
              VKGL +  TF G   ++S  I+E+IL    S+I    ++  LW+ AL+ LV IG  I+
Sbjct: 515  FGVKGLLILGTFRGGSLIISNSIFENILLTFTSIIISEFENTLLWKLALKALVHIGSFID 574

Query: 1775 RFHDSEKEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEA 1596
            RF++SEK   Y   VIE+               LKLEAIS+IG  G +++  ++ GLEEA
Sbjct: 575  RFNESEKALSYMDVVIEKIVSLASSHDFSMPFPLKLEAISEIGATGRNYLLKIVQGLEEA 634

Query: 1595 IFSNFSVACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNG 1416
            + +N     V+G+P  AE++V LLECYSN++LP  H+ G  ++V ++FAV+IWNL+EK+ 
Sbjct: 635  VCANLYEVLVHGNPKSAEVVVQLLECYSNKVLPRIHEIGGFEEVLLRFAVNIWNLIEKSV 694

Query: 1415 VLSVELQKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLD------PLL 1254
              S ++ ++GLLD TM AMKLAVG C+ E+Q  + QKA+ +LS   +  L+      P+L
Sbjct: 695  TFSSQVHEKGLLDATMKAMKLAVGSCSVESQNIVFQKAFTVLSLGTYFPLEDAASNIPIL 754

Query: 1253 FPLSNLEALQSVPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGC 1074
                 L   Q   + S  S ++ W+ SLFAS++IA RP   +P+V  VIRLF   LLKG 
Sbjct: 755  -----LNEFQLTQETSISSSREAWICSLFASVIIAARPQTHIPNVRLVIRLFMTTLLKGN 809

Query: 1073 LPAAQALASMINKWPADLNRTELSSSYKLEDAIEVILESLLAVFSSSP-------LEECK 915
            +PAAQAL SM+NK     N TE+  +  LE+A+++I +S L  F+ S        LE   
Sbjct: 810  VPAAQALGSMVNKLGLKSNGTEVHGNCTLEEAMDIIFDSKLWSFNDSVTLRSNGGLENGS 869

Query: 914  IVNSTDGSFNCSSPSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITT 735
             +  TD     ++  SL +HAI G AWIGK LLMRGHE+V++I M  ++ LLS+ +K+ +
Sbjct: 870  SIGLTDICRGATNIRSLQVHAIAGLAWIGKGLLMRGHEKVKDITMTFIECLLSN-SKLGS 928

Query: 734  VSTDESEIGNYQDMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPV 555
             S ++    N  +    + + AADAF IL+ DSE CL++K HATIRPLYKQRF+S++MP+
Sbjct: 929  FSLEQDYSENSSES---VVKYAADAFKILMGDSEDCLSRKLHATIRPLYKQRFYSTIMPI 985

Query: 554  LLXXXXXXXXXSTRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEM 375
            L           +R++L RA  HI  DTPL  ++ +AK VIP L++GLS LS ++ DK++
Sbjct: 986  LQSLIIKSNSSFSRSILCRACAHIISDTPLIVVLNDAKTVIPILMDGLSILSNDVSDKDI 1045

Query: 374  TYNLLLVLSGILMDENGKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPH 195
             Y+LLLVLSGIL D+NG+EA+IE A           SYPHMMLVRETAIQCL A+S LPH
Sbjct: 1046 VYSLLLVLSGILTDKNGQEAVIECAHIIIDHSIILISYPHMMLVRETAIQCLVAMSGLPH 1105

Query: 194  TRIYPMRPQVLRALVMSLDDRKRVVRQEAVRCRQAWASIASRSLHF 57
             RIYPMR QVL+A+  +LDD KR VRQEAVRCRQAWAS ASRSL+F
Sbjct: 1106 ARIYPMRRQVLQAVSRALDDPKRAVRQEAVRCRQAWASTASRSLYF 1151


>gb|KDO51789.1| hypothetical protein CISIN_1g001284mg [Citrus sinensis]
          Length = 1103

 Score =  828 bits (2140), Expect = 0.0
 Identities = 483/1066 (45%), Positives = 663/1066 (62%), Gaps = 29/1066 (2%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LALLRRKS+ G++T ++AK +A++Y+ +++ QSLA HDRKLCFE+L+CLL  YP+A+ +L
Sbjct: 62   LALLRRKSSGGVITTNDAKAVAQSYIQNLQVQSLAQHDRKLCFELLECLLQRYPDAVVSL 121

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             ++L+  I +AIDGEKDP CLMLTFHI E   ++F D   L A+FAS+LFEILG YFPI+
Sbjct: 122  GEDLLYAICEAIDGEKDPHCLMLTFHIVEVAAELFSDD--LLANFASDLFEILGCYFPIH 179

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTH +++DF++KRDDLSRALM AF ST  FE FAI                   KYLS+C
Sbjct: 180  FTHSKAEDFDVKRDDLSRALMAAFSSTSLFEPFAIPLLLEKLSSSLQSAKVDSLKYLSHC 239

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
             + YGAD + KHAKA+WS +KD I+  S + T+    SES   +  ++  IL E+L  L 
Sbjct: 240  TVKYGADRIEKHAKAMWSSIKDAIYS-SHEPTLS-FASESLDGVGFRDNVILTESLNLLD 297

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
                Q    NS  F+S I+ D+DI   F+S+   + Y  IS +S ++           +K
Sbjct: 298  TVFKQ----NSGLFLSWIIGDEDINLIFKSISSFKTYKEISLQSKQKLHAVGSILSVSAK 353

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNMGCKTFSNI-------LNFGALYLCVELLASCR 2109
             S   C+ V +  F  LM  LG+S+ N     F N        LN GALYLC+EL+ +CR
Sbjct: 354  ASPAACNSVMESFFPCLMHPLGLSVGNSTQDCFPNDGNVLRGKLNHGALYLCIELMTACR 413

Query: 2108 DLTMVAQDL-SPQVPDN--WWYLLKDFSGPLTYAFRSAL---VNPDIVRNAGPEYMTCV- 1950
            +L   +++  S   P N  W+ LL+ +S  L  A RS L    N D        Y T V 
Sbjct: 414  ELMASSEEFKSVAAPANERWYCLLQSYSASLAKALRSTLETSANED-------SYETNVY 466

Query: 1949 --VKGLQVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIE 1776
              VKGL +  TF G   ++S  I+E+IL    S+I    ++  LW+ AL+ LV IG  I+
Sbjct: 467  FGVKGLLILGTFSGGSLIISNSIFENILLTFTSIIISEFENTLLWKLALKALVHIGSFID 526

Query: 1775 RFHDSEKEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEA 1596
            RF++SEK   Y   VIE+               LKLEAIS+IG  G +++  ++ GLEEA
Sbjct: 527  RFNESEKALSYMDVVIEKIVSLASSHDFSMPFPLKLEAISEIGATGRNYLLKIVQGLEEA 586

Query: 1595 IFSNFSVACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNG 1416
            + +N     V+G+P  AE++V LLECYSN++LP  H+ G  ++V ++FAV+IWNL+EK+ 
Sbjct: 587  VCANLYEVLVHGNPKSAEVVVQLLECYSNKVLPRIHEIGGFEEVLLRFAVNIWNLIEKSV 646

Query: 1415 VLSVELQKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLD------PLL 1254
              S ++ ++GLLD TM AMKLAVG C+ E+Q  + QKA+ +LS   +  L+      P+L
Sbjct: 647  TFSSQVHEKGLLDATMKAMKLAVGSCSVESQNIVFQKAFTVLSLGTYFPLEDAASNIPIL 706

Query: 1253 FPLSNLEALQSVPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGC 1074
                 L   Q   + S  S ++ W+ SLFAS++IA RP   +P+V  VIRLF   LLKG 
Sbjct: 707  -----LNEFQLTQETSISSSREAWICSLFASVIIAARPQTHIPNVRLVIRLFMTTLLKGN 761

Query: 1073 LPAAQALASMINKWPADLNRTELSSSYKLEDAIEVILESLLAVFSSSP-------LEECK 915
            +PAAQAL SM+NK     N TE+  +  LE+A+++I +S L  F+ S        LE   
Sbjct: 762  VPAAQALGSMVNKLGLKSNGTEVHGNCTLEEAMDIIFDSKLWSFNDSVTLRSNGGLENGS 821

Query: 914  IVNSTDGSFNCSSPSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITT 735
             +  TD     ++  SL +HAI G AWIGK LLMRGHE+V++I M  ++ LLS+ +K+ +
Sbjct: 822  SIGLTDICRGATNIRSLQVHAIAGLAWIGKGLLMRGHEKVKDITMTFIECLLSN-SKLGS 880

Query: 734  VSTDESEIGNYQDMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPV 555
             S ++    N  +    + + AADAF IL+ DSE CL++K HATIRPLYKQRF+S++MP+
Sbjct: 881  FSLEQDYSENSSES---VVKYAADAFKILMGDSEDCLSRKLHATIRPLYKQRFYSTIMPI 937

Query: 554  LLXXXXXXXXXSTRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEM 375
            L           +R++L RA  HI  DTPL  ++ +AK VIP L++GLS LS ++ DK++
Sbjct: 938  LQSLIIKSNSSFSRSILCRACAHIISDTPLIVVLNDAKTVIPILMDGLSILSNDVSDKDI 997

Query: 374  TYNLLLVLSGILMDENGKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPH 195
             Y+LLLVLSGIL D+NG+EA+IE A           SYPHMMLVRETAIQCL A+S LPH
Sbjct: 998  VYSLLLVLSGILTDKNGQEAVIECAHIIIDHSIILISYPHMMLVRETAIQCLVAMSKLPH 1057

Query: 194  TRIYPMRPQVLRALVMSLDDRKRVVRQEAVRCRQAWASIASRSLHF 57
             RIYPMR +VL+A+  +LDD KR VRQEAVRCRQAWAS ASRSL+F
Sbjct: 1058 ARIYPMRREVLQAISRALDDPKRAVRQEAVRCRQAWASTASRSLYF 1103


>ref|XP_006465694.1| PREDICTED: MMS19 nucleotide excision repair protein homolog isoform
            X1 [Citrus sinensis]
          Length = 1155

 Score =  827 bits (2136), Expect = 0.0
 Identities = 485/1070 (45%), Positives = 663/1070 (61%), Gaps = 33/1070 (3%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LALLRRKS+ G++T ++AK +A++Y+ +++ QSLA HDRKLCFE+L+CLL  YP+A+ +L
Sbjct: 110  LALLRRKSSGGVITTNDAKAVAQSYIQNLQVQSLAQHDRKLCFELLECLLQRYPDAVVSL 169

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             ++L+  I +AIDGEKDP CLMLTFHI E   ++F D   L A+FAS+LFEILG YFPI+
Sbjct: 170  GEDLLYAICEAIDGEKDPHCLMLTFHIVEVAAELFSDD--LLANFASDLFEILGCYFPIH 227

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTH +++DF++KRDDLSRALM AF ST  FE FAI                   KYLS+C
Sbjct: 228  FTHSKAEDFDVKRDDLSRALMAAFSSTSLFEPFAIPLLLEKLSSSLQSAKVDSLKYLSHC 287

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
             + YGAD + KHAKA+WS +KD ++  S + T+    SES   +  +E  IL E+L  L 
Sbjct: 288  TVKYGADRIEKHAKAMWSSIKDAVYS-SHEPTLS-FASESLDGVGFRENVILTESLNLLD 345

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
                Q    NS  F+S I+ D+DI   F+S+   + Y  IS +S ++           +K
Sbjct: 346  TVFKQ----NSGLFLSWIIGDEDINLIFKSISSYKTYKEISLQSKQKLHAVGSILSVSAK 401

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNMGCKTFSNI-------LNFGALYLCVELLASCR 2109
             S   C+ V +  F  LM  LG+S+ N     F N        LN GALYLC+EL+ +CR
Sbjct: 402  ASPAACNSVMESFFPCLMHALGLSVGNSTQDCFPNDGNVLRGKLNHGALYLCIELMTACR 461

Query: 2108 DLTMVAQDL-SPQVPDN--WWYLLKDFSGPLTYAFRSAL---VNPDIVRNAGPEYMTCV- 1950
            +L   +++  S   P N  W+ LL+ +S  L  A RS L    N D        Y T V 
Sbjct: 462  ELMASSEEFKSVAAPANERWYCLLQSYSASLAKALRSTLETSANED-------SYETNVY 514

Query: 1949 --VKGLQVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIE 1776
              VKGL +  TF G   ++S  I+E+IL    S+I    ++  LW+ AL+ LV IG  I+
Sbjct: 515  FGVKGLLILGTFRGGSLIISNSIFENILLTFTSIIISEFENTLLWKLALKALVHIGSFID 574

Query: 1775 RFHDSEKEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEA 1596
            RF++SEK   Y   VIE+               LKLEAIS+IG  G +++  ++ GLEEA
Sbjct: 575  RFNESEKALSYMDVVIEKIVSLASSHDFSMPFPLKLEAISEIGATGRNYLLKIVQGLEEA 634

Query: 1595 IFSNFSVACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNG 1416
            + +N     V+G+P  AE++V LLECYSN++LP  H+ G  ++V ++FAV+IWNL+EK+ 
Sbjct: 635  VCANLYEVLVHGNPKSAEVVVQLLECYSNKVLPRIHEIGGFEEVLLRFAVNIWNLIEKSV 694

Query: 1415 VLSVELQKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLD------PLL 1254
              S ++ ++GLLD TM AMKLAVG C+ E+Q  + QKA+ +LS   +  L+      P+L
Sbjct: 695  TFSSQVHEKGLLDATMKAMKLAVGSCSVESQNIVFQKAFTVLSLGTYFPLEDAASNIPIL 754

Query: 1253 FPLSNLEALQSVPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGC 1074
                 L   Q   + S  S ++ W+ SLFAS++IA RP   +P+V  VIRLF   LLKG 
Sbjct: 755  -----LNEFQLTQETSISSSREAWICSLFASVIIAARPQTHIPNVRLVIRLFMTTLLKGN 809

Query: 1073 LPAAQALASMINKWPADLNRTELSSSYKLEDAIEVILESLLAVF-------SSSPLEECK 915
            +PAAQAL SM+NK     N TE+  +  LE+A+++I +S L  F       S+  LE   
Sbjct: 810  VPAAQALGSMVNKLGLKSNGTEVHGNCTLEEAMDIIFDSKLWSFNDSVTLRSNGGLENGS 869

Query: 914  IVNSTDGSFNCSSPSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITT 735
             +  TD     ++  SL +HAI G AWIGK LLMRGHE+V++I M  ++ LLS+ +K+ +
Sbjct: 870  SIGLTDICRGATNIRSLQVHAIAGLAWIGKGLLMRGHEKVKDITMTFIECLLSN-SKLGS 928

Query: 734  VSTDESEIGNYQDMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPV 555
             S ++    N  +    + + AADAF IL+ DSE CL++K HATIRPLYKQRF+S++MP+
Sbjct: 929  FSLEQDYSENSSES---VVKYAADAFKILMGDSEDCLSRKLHATIRPLYKQRFYSTIMPI 985

Query: 554  LLXXXXXXXXXSTRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEM 375
            L           +R++L RA  HI  DTPL  ++ +AK VIP L++GLS LS ++ DK++
Sbjct: 986  LQSLIIKSNSSFSRSILCRACAHIISDTPLIVVLNDAKTVIPILMDGLSILSNDVSDKDI 1045

Query: 374  TYNLLLVLSGILMDENGK----EAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALS 207
             Y+LLLVLSGIL D+NGK    EA+IE A           SYPHMMLVRETAIQCL A+S
Sbjct: 1046 VYSLLLVLSGILTDKNGKTIGQEAVIECAHIIIDHSIILISYPHMMLVRETAIQCLVAMS 1105

Query: 206  ALPHTRIYPMRPQVLRALVMSLDDRKRVVRQEAVRCRQAWASIASRSLHF 57
             LPH RIYPMR QVL+A+  +LDD KR VRQEAVRCRQAWAS ASRSL+F
Sbjct: 1106 GLPHARIYPMRRQVLQAVSRALDDPKRAVRQEAVRCRQAWASTASRSLYF 1155


>ref|XP_007024310.1| MMS19 nucleotide excision repair protein, putative isoform 1
            [Theobroma cacao] gi|590619491|ref|XP_007024311.1| MMS19
            nucleotide excision repair protein, putative isoform 1
            [Theobroma cacao] gi|508779676|gb|EOY26932.1| MMS19
            nucleotide excision repair protein, putative isoform 1
            [Theobroma cacao] gi|508779677|gb|EOY26933.1| MMS19
            nucleotide excision repair protein, putative isoform 1
            [Theobroma cacao]
          Length = 1149

 Score =  825 bits (2130), Expect = 0.0
 Identities = 480/1058 (45%), Positives = 653/1058 (61%), Gaps = 21/1058 (1%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LALLRRKS+ G+V+ ++AK +AE+YL +++ QSL  +DRKLCFE+L CLL+ YP+AIA+L
Sbjct: 110  LALLRRKSSGGIVSETDAKAVAESYLQNLQVQSLGKYDRKLCFELLLCLLERYPKAIASL 169

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             D LI GI +A+DGEKDP CLML FHI E L Q+FPD      SFA +LFE L  YFP++
Sbjct: 170  GDNLIYGICEAVDGEKDPHCLMLIFHIIEILPQLFPDPLGPFTSFAHDLFENLSYYFPVH 229

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTH + +D  IKRDDL+RALM AF STP FE FAI                   +YLS+C
Sbjct: 230  FTHPKGEDVNIKRDDLARALMLAFSSTPLFEPFAIPLLIEKLSSSLPSAKVDSLRYLSDC 289

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
             + YG D M KH +A+WS LKD +F  S+ G +   T ES   +   E +I  EAL+ LQ
Sbjct: 290  TVKYGVDRMAKHGEALWSSLKDAVFT-SLDGVLS-FTPESLEGLCLPENEIAAEALSLLQ 347

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
              I Q    N+  F+ LI+ D+DI   F  +   + Y GI  +S ++            K
Sbjct: 348  KLIVQ----NTNFFLDLIVVDEDINMIFNMISSYKSYHGIPAQSKQRLHAVGCILSASVK 403

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNMGCKTFSNI-------LNFGALYLCVELLASCR 2109
             ST  C+RVF+  F RLM +LG+ + N      S+         N GALYL +ELL++CR
Sbjct: 404  ASTASCNRVFECFFSRLMDILGLCVRNSSGNLSSDDSIMIPKRYNHGALYLSIELLSACR 463

Query: 2108 DLTMVAQDL---SPQVPDNWWYLLKDFSGPLTYAFRSALVNPDIVRNAGPEYMTCVVKGL 1938
            D+   ++ +   S    + W YLL+ FS  LT AF SA +      +    Y    VKGL
Sbjct: 464  DVIASSETIIAASAHTEETWSYLLRSFSSSLTKAFCSASICTSEDSHDADVYFG--VKGL 521

Query: 1937 QVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIERFHDSE 1758
             + ATFP  + L+S+ ++E IL   +S++T    +  LW+ AL+ LVQIG  IE+ H+SE
Sbjct: 522  LILATFPEGYLLISKPVFEKILMTFVSIVTVDYSNTLLWKLALKALVQIGSFIEKCHESE 581

Query: 1757 KEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEAIFSNFS 1578
            KE  Y   V+E+               L+LEA+S+IGT+G  +M  V+ GLEEAI++N S
Sbjct: 582  KEPSYLGLVVEKIVSFSSLGDFSIPFPLRLEALSEIGTSGKSYMLKVVEGLEEAIYANLS 641

Query: 1577 VACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNGVLSV-E 1401
               V+GS   AEI+  LL+CYS++++PW       D+V +QFA+ IWN +E + V +  +
Sbjct: 642  EVYVHGSSNSAEIVTQLLKCYSDKVIPWIQCAKGFDEVPLQFAIHIWNQIELSMVFNATQ 701

Query: 1400 LQKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLDPLLFPLSNLEALQS 1221
              K  +LD  M AMKLAV  C+EENQ  +VQK+Y+ILS +         FPL  L   +S
Sbjct: 702  TNKIEVLDVMMKAMKLAVASCSEENQNIIVQKSYHILSSSTS-------FPLKELFRQES 754

Query: 1220 --VPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGCLPAAQALAS 1047
              +  +   S +DEW++SLFA++VIA+ P   +P++  ++ LF   LLKG +  AQAL S
Sbjct: 755  FQIVQVDNSSSRDEWILSLFAAVVIAVHPETYVPNIKPLLYLFMTTLLKGNVVTAQALGS 814

Query: 1046 MINKWPADLNRTELSSSYKLEDAIEVILESLLAVF--SSSPLEECKIVNSTDGSF----- 888
            ++NK    L    + +   LE+ +++IL   L +F  +SS   + K+ ++ D S      
Sbjct: 815  VVNK--LGLESAGVQTDCTLEEVMDIILNLSLWIFHSNSSADIQAKMTSAHDISLINLCS 872

Query: 887  NCSSPSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLL-SSQNKITTVSTDESEI 711
            +  S +SL IHAIVG AWIGK LLMRGHE+V++I M  L+ L  + + +I       SE 
Sbjct: 873  SIGSCTSLQIHAIVGLAWIGKGLLMRGHEKVKDITMIFLRCLQPNGRAEILHQEEGISES 932

Query: 710  GNYQDMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPVLLXXXXXX 531
             N  D+H  + ++AADAF IL+ DSE CLN+ FHA IRPLYKQRFFS+MMP+L       
Sbjct: 933  NNELDLHHSVMKSAADAFQILMGDSEVCLNRGFHAVIRPLYKQRFFSTMMPIL-QSLIMK 991

Query: 530  XXXSTRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEMTYNLLLVL 351
                +R +L RA  HI  DTPL  ++++AKK+IP LL+GLS LS +ILDK++ Y LLLVL
Sbjct: 992  SEPLSRPLLLRASAHIIVDTPLIVVLSDAKKIIPMLLDGLSALSNDILDKDVIYGLLLVL 1051

Query: 350  SGILMDENGKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPHTRIYPMRP 171
            SGILMD+NG+EA+ ++A            YPHMMLVRETAIQCL A+S L + R+YPMR 
Sbjct: 1052 SGILMDKNGQEAVSDSAHTITNRLIELIQYPHMMLVRETAIQCLVAISGLSYARVYPMRT 1111

Query: 170  QVLRALVMSLDDRKRVVRQEAVRCRQAWASIASRSLHF 57
            QVL+A+  +LDD KR VRQEAVRCRQAWASIASRSLHF
Sbjct: 1112 QVLQAIAKALDDPKRAVRQEAVRCRQAWASIASRSLHF 1149


>gb|KDO51790.1| hypothetical protein CISIN_1g001284mg [Citrus sinensis]
          Length = 1107

 Score =  824 bits (2129), Expect = 0.0
 Identities = 484/1070 (45%), Positives = 663/1070 (61%), Gaps = 33/1070 (3%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LALLRRKS+ G++T ++AK +A++Y+ +++ QSLA HDRKLCFE+L+CLL  YP+A+ +L
Sbjct: 62   LALLRRKSSGGVITTNDAKAVAQSYIQNLQVQSLAQHDRKLCFELLECLLQRYPDAVVSL 121

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             ++L+  I +AIDGEKDP CLMLTFHI E   ++F D   L A+FAS+LFEILG YFPI+
Sbjct: 122  GEDLLYAICEAIDGEKDPHCLMLTFHIVEVAAELFSDD--LLANFASDLFEILGCYFPIH 179

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTH +++DF++KRDDLSRALM AF ST  FE FAI                   KYLS+C
Sbjct: 180  FTHSKAEDFDVKRDDLSRALMAAFSSTSLFEPFAIPLLLEKLSSSLQSAKVDSLKYLSHC 239

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
             + YGAD + KHAKA+WS +KD I+  S + T+    SES   +  ++  IL E+L  L 
Sbjct: 240  TVKYGADRIEKHAKAMWSSIKDAIYS-SHEPTLS-FASESLDGVGFRDNVILTESLNLLD 297

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
                Q    NS  F+S I+ D+DI   F+S+   + Y  IS +S ++           +K
Sbjct: 298  TVFKQ----NSGLFLSWIIGDEDINLIFKSISSFKTYKEISLQSKQKLHAVGSILSVSAK 353

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNMGCKTFSNI-------LNFGALYLCVELLASCR 2109
             S   C+ V +  F  LM  LG+S+ N     F N        LN GALYLC+EL+ +CR
Sbjct: 354  ASPAACNSVMESFFPCLMHPLGLSVGNSTQDCFPNDGNVLRGKLNHGALYLCIELMTACR 413

Query: 2108 DLTMVAQDL-SPQVPDN--WWYLLKDFSGPLTYAFRSAL---VNPDIVRNAGPEYMTCV- 1950
            +L   +++  S   P N  W+ LL+ +S  L  A RS L    N D        Y T V 
Sbjct: 414  ELMASSEEFKSVAAPANERWYCLLQSYSASLAKALRSTLETSANED-------SYETNVY 466

Query: 1949 --VKGLQVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIE 1776
              VKGL +  TF G   ++S  I+E+IL    S+I    ++  LW+ AL+ LV IG  I+
Sbjct: 467  FGVKGLLILGTFSGGSLIISNSIFENILLTFTSIIISEFENTLLWKLALKALVHIGSFID 526

Query: 1775 RFHDSEKEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEA 1596
            RF++SEK   Y   VIE+               LKLEAIS+IG  G +++  ++ GLEEA
Sbjct: 527  RFNESEKALSYMDVVIEKIVSLASSHDFSMPFPLKLEAISEIGATGRNYLLKIVQGLEEA 586

Query: 1595 IFSNFSVACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNG 1416
            + +N     V+G+P  AE++V LLECYSN++LP  H+ G  ++V ++FAV+IWNL+EK+ 
Sbjct: 587  VCANLYEVLVHGNPKSAEVVVQLLECYSNKVLPRIHEIGGFEEVLLRFAVNIWNLIEKSV 646

Query: 1415 VLSVELQKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLD------PLL 1254
              S ++ ++GLLD TM AMKLAVG C+ E+Q  + QKA+ +LS   +  L+      P+L
Sbjct: 647  TFSSQVHEKGLLDATMKAMKLAVGSCSVESQNIVFQKAFTVLSLGTYFPLEDAASNIPIL 706

Query: 1253 FPLSNLEALQSVPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGC 1074
                 L   Q   + S  S ++ W+ SLFAS++IA RP   +P+V  VIRLF   LLKG 
Sbjct: 707  -----LNEFQLTQETSISSSREAWICSLFASVIIAARPQTHIPNVRLVIRLFMTTLLKGN 761

Query: 1073 LPAAQALASMINKWPADLNRTELSSSYKLEDAIEVILESLLAVF-------SSSPLEECK 915
            +PAAQAL SM+NK     N TE+  +  LE+A+++I +S L  F       S+  LE   
Sbjct: 762  VPAAQALGSMVNKLGLKSNGTEVHGNCTLEEAMDIIFDSKLWSFNDSVTLRSNGGLENGS 821

Query: 914  IVNSTDGSFNCSSPSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITT 735
             +  TD     ++  SL +HAI G AWIGK LLMRGHE+V++I M  ++ LLS+ +K+ +
Sbjct: 822  SIGLTDICRGATNIRSLQVHAIAGLAWIGKGLLMRGHEKVKDITMTFIECLLSN-SKLGS 880

Query: 734  VSTDESEIGNYQDMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPV 555
             S ++    N  +    + + AADAF IL+ DSE CL++K HATIRPLYKQRF+S++MP+
Sbjct: 881  FSLEQDYSENSSES---VVKYAADAFKILMGDSEDCLSRKLHATIRPLYKQRFYSTIMPI 937

Query: 554  LLXXXXXXXXXSTRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEM 375
            L           +R++L RA  HI  DTPL  ++ +AK VIP L++GLS LS ++ DK++
Sbjct: 938  LQSLIIKSNSSFSRSILCRACAHIISDTPLIVVLNDAKTVIPILMDGLSILSNDVSDKDI 997

Query: 374  TYNLLLVLSGILMDENGK----EAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALS 207
             Y+LLLVLSGIL D+NGK    EA+IE A           SYPHMMLVRETAIQCL A+S
Sbjct: 998  VYSLLLVLSGILTDKNGKTIGQEAVIECAHIIIDHSIILISYPHMMLVRETAIQCLVAMS 1057

Query: 206  ALPHTRIYPMRPQVLRALVMSLDDRKRVVRQEAVRCRQAWASIASRSLHF 57
             LPH RIYPMR +VL+A+  +LDD KR VRQEAVRCRQAWAS ASRSL+F
Sbjct: 1058 KLPHARIYPMRREVLQAISRALDDPKRAVRQEAVRCRQAWASTASRSLYF 1107


>ref|XP_006426876.1| hypothetical protein CICLE_v10024743mg [Citrus clementina]
            gi|557528866|gb|ESR40116.1| hypothetical protein
            CICLE_v10024743mg [Citrus clementina]
          Length = 1155

 Score =  818 bits (2114), Expect = 0.0
 Identities = 478/1065 (44%), Positives = 659/1065 (61%), Gaps = 28/1065 (2%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LALLRRKS+ G++T ++AK +A++Y+ +++ QSLA HDRKLCFE+L+CLL  YP+A+ +L
Sbjct: 110  LALLRRKSSGGVITTNDAKAVAQSYIQNLQVQSLAQHDRKLCFELLECLLQRYPDAVVSL 169

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             ++L+  I +A+DGEKDP CLMLTFHI E   ++F D   L A+FA +LFEILG YFPI+
Sbjct: 170  GEDLLYAICEAVDGEKDPHCLMLTFHIVEVAAELFSDD--LLANFAGDLFEILGCYFPIH 227

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTH +++DF++KRDDLSRALM AF ST  FE FAI                   KYLS+C
Sbjct: 228  FTHSKAEDFDVKRDDLSRALMAAFSSTSLFEPFAIPLLLEKLSSSLQSAKVDSLKYLSHC 287

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
             + YGAD + KHAKA+WS +KD I+  S + T+    SES   +  ++  IL E+L  L 
Sbjct: 288  TVKYGADRIEKHAKAMWSSIKDAIYS-SHEPTLS-FASESLDGVGFRDNVILTESLNLLD 345

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
                Q    NS  F+S I+ D+DI   F+S+   + Y  IS +S ++           +K
Sbjct: 346  TVFKQ----NSGLFLSWIIGDEDINLIFKSISSFKTYKEISLQSKQKLHAVGSILSVSAK 401

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNMGCKTFSNI-------LNFGALYLCVELLASCR 2109
             S   C+ V +  F  LM  LG+S+ N     F N        LN GALYLC+EL+ +CR
Sbjct: 402  ASPAACNSVMESFFPCLMHPLGLSVGNSTQDCFPNDGNVLRGKLNHGALYLCIELMTACR 461

Query: 2108 DLTMVAQDL-SPQVPDN--WWYLLKDFSGPLTYAFRSAL---VNPDIVRNAGPEYMTCV- 1950
            +L   +++  S   P N  W+ LL+ +S  L  A RS L    N D        Y T V 
Sbjct: 462  ELMASSEEFKSVAAPANERWYCLLQSYSASLAKALRSTLETSANED-------SYETNVY 514

Query: 1949 --VKGLQVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIE 1776
              VKGL +  TF G   ++S  I+E+IL    S+I    ++  LW+ AL+ LV IG  I+
Sbjct: 515  FGVKGLLILGTFSGGSLIISNSIFENILLTFTSIIISEFENTLLWKLALKALVHIGSFID 574

Query: 1775 RFHDSEKEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEA 1596
            RF++SEK   Y   VIE+               LKLEAIS+IG  G +++  ++ GLEEA
Sbjct: 575  RFNESEKALSYMDVVIEKIVSLASSHDFSMPFPLKLEAISEIGATGRNYLLKIVQGLEEA 634

Query: 1595 IFSNFSVACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNG 1416
            + +N     V+G+P  AE++V LLECYSN++LP  H+ G  ++V ++FAV+IWNL+EK+ 
Sbjct: 635  VCANLYEVLVHGNPKSAEVVVQLLECYSNKVLPRIHEIGGFEEVLLRFAVNIWNLIEKSV 694

Query: 1415 VLSVELQKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLDPLLFPLS-N 1239
              S ++ ++GLLD TM AMKLAVG C+ E+Q  + QKA+ +LS   +  L+     +   
Sbjct: 695  TFSSQVHEKGLLDATMKAMKLAVGSCSVESQNIVFQKAFTVLSLGTYFPLEDAASNIPIQ 754

Query: 1238 LEALQSVPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGCLPAAQ 1059
            L   Q   + S  S ++ W+ SLFAS++IA  P   +P+V  VIRLF   LLKG +PAAQ
Sbjct: 755  LNEFQLTQETSISSSREAWICSLFASVIIAACPQTHIPNVRLVIRLFMTTLLKGNVPAAQ 814

Query: 1058 ALASMINKWPADLNRTELSSSYKLEDAIEVILESLLAVF-------SSSPLEECKIVNST 900
            AL SM+NK     N TE+  +  LE+A+++I +S L  F       S+  LE    +  T
Sbjct: 815  ALGSMVNKLGLKSNGTEVHGNCTLEEAMDIIFDSKLWSFNDSVTLRSNGGLENGSSIGLT 874

Query: 899  DGSFNCSSPSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITTVSTDE 720
            D     ++  SL +HAI G AWIGK LLMRGHE+V++I M  ++ LLS+ +K+ + S ++
Sbjct: 875  DICRGATNIRSLQVHAIAGLAWIGKGLLMRGHEKVKDITMTFIECLLSN-SKLGSFSLEQ 933

Query: 719  SEIGNYQDMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPVLLXXX 540
                N  +    + + AADAF IL+ DSE CL++K HATIRPLYKQRF+S++MP+L    
Sbjct: 934  DYSENSSES---VVKYAADAFKILMGDSEDCLSRKLHATIRPLYKQRFYSTIMPILQSLI 990

Query: 539  XXXXXXSTRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEMTYNLL 360
                   +R++L RA  HI  DTPL  ++ +AK VIP L++GLS LS ++ DK++ Y+LL
Sbjct: 991  IKSNSSFSRSILCRACAHIISDTPLIVVLNDAKTVIPILMDGLSILSNDVSDKDIVYSLL 1050

Query: 359  LVLSGILMDEN----GKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPHT 192
            LVLSGIL D+N    G+EA+IE A           SYPHMMLVRETAIQCL A+S LPH 
Sbjct: 1051 LVLSGILTDKNVKTIGQEAVIECAHIIIDHIIKLISYPHMMLVRETAIQCLVAMSKLPHA 1110

Query: 191  RIYPMRPQVLRALVMSLDDRKRVVRQEAVRCRQAWASIASRSLHF 57
            RIYPMR +VL+A+  +LDD KR VRQEAVRCRQAWAS ASRSL+F
Sbjct: 1111 RIYPMRREVLQAISRALDDPKRAVRQEAVRCRQAWASTASRSLYF 1155


>ref|XP_008228424.1| PREDICTED: MMS19 nucleotide excision repair protein homolog [Prunus
            mume]
          Length = 1159

 Score =  812 bits (2097), Expect = 0.0
 Identities = 468/1061 (44%), Positives = 652/1061 (61%), Gaps = 30/1061 (2%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LALLRRK N GMV+ S+AK++A++Y+  ++ QSL  HDRKLCFE+L+CLL+ +P  IA+L
Sbjct: 110  LALLRRKVNAGMVSASDAKLVAQSYIESLQVQSLGQHDRKLCFELLECLLERHPNEIASL 169

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             +    GI  A+DGEKDP CLMLTF I ETL +I+PD S   ASF  +LFE+LG YFPI+
Sbjct: 170  GETFFYGICQAMDGEKDPHCLMLTFPIVETLVRIYPDPSGSLASFCGDLFELLGSYFPIH 229

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTH + +D E+KRDDLS+ALM+AF STP FE F I                   KYL++C
Sbjct: 230  FTHLKDEDAEVKRDDLSKALMSAFSSTPLFEPFVIPLLLEKLSSSLPLAKVDSLKYLNHC 289

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
               YGAD M KHA AIW  LKD I + S++      TSE    +  +E +I  EAL  LQ
Sbjct: 290  TAKYGADRMAKHAGAIWISLKDAISN-SLEKPAMSFTSEPLYGLGFQENEIATEALMLLQ 348

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
                Q    N   F+SLI+ D+ I   F S+     Y+ I  +  +            SK
Sbjct: 349  KVTLQ----NEALFLSLIIQDEGINIVFNSIASHEHYNNIPLQGKQWLHAVGRILYIISK 404

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNMG--CKTFSNIL-----NFGALYLCVELLASCR 2109
             S   C+ VF+  F RLM+ L +S++N    C    N       NFGALYLCVEL+A+CR
Sbjct: 405  TSMASCNSVFESFFPRLMNTLEISVTNSSGDCTLNENSFPSKKYNFGALYLCVELIAACR 464

Query: 2108 DLTMVAQDLSPQVPDN----WWYLLKDFSGPLTYAFRSALV-NPDIVRNAGPEYMTCVVK 1944
            DL M  +DL+P+ PD       Y+L+ F+  L  AF S+L  N + V +    Y    VK
Sbjct: 465  DLIMRLKDLAPK-PDTPQETCRYMLQSFADSLVNAFSSSLATNANEVAHGADIYFK--VK 521

Query: 1943 GLQVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIERFHD 1764
            GLQ+ ATFPG F  +S+ ++ +IL +LMS+I    +   LW+  L+ LV IG  ++ +H+
Sbjct: 522  GLQILATFPGDFLPISKFLFANILTILMSIILVDFNKILLWKLVLKALVHIGSFVDMYHE 581

Query: 1763 SEKEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEAIFSN 1584
            SEK   Y   V+++              +LKLEA+S+IG +G + M  ++HG+EEAI + 
Sbjct: 582  SEKALCYMGAVVDKTVSLVSRDDFNMPFSLKLEAVSEIGASGRNHMLKIVHGMEEAIVAK 641

Query: 1583 FSVACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNGVLSV 1404
             S   V+G+   AE  + LLECY N++L W ++ G  ++V ++F ++IW+ +E     S+
Sbjct: 642  LS-DYVHGNLKSAEKTIQLLECYCNKILSWINETGGLEEVLLRFVINIWSCVESCKDFSI 700

Query: 1403 ELQKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSR------------TNFLQLDP 1260
            ++Q++ LLD TMMAMKLA+G C+EE+Q  ++ KAY+++S             T+ +QL+ 
Sbjct: 701  QVQEEELLDATMMAMKLAIGSCSEESQNIIIHKAYSVISSSISIPFKDSLDATSSIQLEE 760

Query: 1259 LLFPLSNLEALQSVPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLK 1080
            L       ++      +   S +DEW++SLFAS++IA+RP   + +V  ++ LF   +LK
Sbjct: 761  LRVSEQIDKSSHRDDQIDKFSRRDEWILSLFASVIIAVRPKAQIVNVKGILHLFMTTVLK 820

Query: 1079 GCLPAAQALASMINKWPADLNRTELSSSYKLEDAIEVILESLL-AVFSSSPLEECKIVNS 903
            GC+PAAQA  S+INK     N T  S+   LE+A+++I  + L  +  +  L+ C   N 
Sbjct: 821  GCVPAAQASGSVINKLGTKSNETANSNDCTLEEAVDMIFSTKLWNLNENGVLQTCGSGNG 880

Query: 902  -----TDGSFNCSSPSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKIT 738
                 TD     SS   L +HAIVG AWIGK LL+ GHE+V+++   LL+ LLS + +I 
Sbjct: 881  SKVGLTDLCLGFSSNKLLQVHAIVGLAWIGKGLLLLGHEKVKDVTKILLECLLS-EGRIC 939

Query: 737  TVSTDESEIGNYQDMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMP 558
             V   +  + N  + HS+ TR+AADAFHI++SDSE CLN+KFHA  RPLYKQRFFS++MP
Sbjct: 940  AVELKQGLLENSYEQHSV-TRSAADAFHIIMSDSEVCLNRKFHAIARPLYKQRFFSTVMP 998

Query: 557  VLLXXXXXXXXXSTRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKE 378
            +L            R++L+RA  H+  + PL  I++EAKK++P LL+GLS LS +ILDK+
Sbjct: 999  ILQSWIIKSDSSVCRSMLFRASAHLISNAPLIVILSEAKKLMPVLLDGLSLLSEDILDKD 1058

Query: 377  MTYNLLLVLSGILMDENGKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALP 198
              Y+LLLVLSGIL D+NG+ A+IENA            YPHMMLVRETA+QCL A S LP
Sbjct: 1059 KLYSLLLVLSGILTDKNGQVAVIENAHILVNCLTRLVDYPHMMLVRETALQCLLATSELP 1118

Query: 197  HTRIYPMRPQVLRALVMSLDDRKRVVRQEAVRCRQAWASIA 75
            + RI+PMR QVL+A+  +LDD KR VRQEAVRCR+AWASIA
Sbjct: 1119 YARIFPMRTQVLQAICKALDDPKRAVRQEAVRCRRAWASIA 1159


>gb|KHG04543.1| MMS19 nucleotide excision repair [Gossypium arboreum]
          Length = 1134

 Score =  803 bits (2073), Expect = 0.0
 Identities = 463/1058 (43%), Positives = 652/1058 (61%), Gaps = 21/1058 (1%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LAL+RRKS+ GMV+ S+AK +AE+YL +++ QSL  ++RKL FE+++CLL+ YP A+A+L
Sbjct: 110  LALMRRKSSGGMVSGSDAKAVAESYLQNLQVQSLGQYERKLSFELMECLLERYPNAVASL 169

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             D LI GI +++DGEKDP CLMLTFHI E L+++FPD S   A FA ELFEILG YFPI+
Sbjct: 170  GDTLIYGICESVDGEKDPHCLMLTFHIIEVLSRLFPDPSDALAGFAHELFEILGCYFPIH 229

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FTHQ+ +D  IKRDDL+RALM AF STP FE +AI                   +YL++C
Sbjct: 230  FTHQKDEDMTIKRDDLARALMLAFSSTPLFEPYAIPLLLEKLSSSLPSAKLDSLRYLTDC 289

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
             + YGAD M KH +AIWS LK+ IF  +   ++   T ES    +  + +I  EAL+ LQ
Sbjct: 290  TMKYGADRMAKHIEAIWSSLKEAIF--TSLDSVLLFTPESLEGSDLPKNEIAAEALSLLQ 347

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
              I Q    N++ F+ LI+ D+DI   F ++   + Y  I  E  ++           +K
Sbjct: 348  KHIVQ----NTKLFLDLIVGDEDISMIFNTISYYKNYHEIPLERKQRLNAVGRVFFTTAK 403

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNMGCKTF-------SNILNFGALYLCVELLASCR 2109
             S   C+RVF+  F +LM +LG+S  N   + +       S   N GALYL +E+L++CR
Sbjct: 404  ASQVSCNRVFECFFSQLMDILGLSARNSSGQPYFDESILISKRCNHGALYLSIEILSACR 463

Query: 2108 DLTMVAQDL---SPQVPDNWWYLLKDFSGPLTYAFRSALVNPDIVRNAGPEYMTCVVKGL 1938
            D+   ++ +   +    + W +LL+ FS  LT  F SA +      +    Y+   VKGL
Sbjct: 464  DMIASSETILAATSHTEETWKHLLQSFSPALTMGFCSAFICSSEGTHDAATYIG--VKGL 521

Query: 1937 QVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIERFHDSE 1758
             + ATFPG +SL+S+ ++E IL   +S+I      R  W+ AL+ LV+IG  IER+H+SE
Sbjct: 522  LILATFPGGYSLISKTVFEKILVTFVSIINEEYSKRLSWKLALKALVEIGSFIERYHESE 581

Query: 1757 KEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEAIFSNFS 1578
            KE  Y   V+E+               L+LEA+S IGT+G  +M  V+ GLEEAI++N  
Sbjct: 582  KESSYMDIVVEKILSLAFVGDFGIPFPLRLEALSDIGTSGRSYMLKVVQGLEEAIYANLY 641

Query: 1577 VACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNGVLSV-E 1401
               V+GS   AEI+  LL+CYS++++PW       ++V +QFA++IWN +E +   +  +
Sbjct: 642  EVYVHGSTNSAEIVTHLLKCYSDKVIPWIRCEKGFEEVLLQFAINIWNQIESSMHFNASQ 701

Query: 1400 LQKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNILSRTNFLQLDPLLFPLSNLEALQS 1221
              K+G+LD  M AMKLAV  C+EE Q  +VQK+YNILS +    L+ LL      E  Q 
Sbjct: 702  TNKKGVLDVMMKAMKLAVANCSEEKQNIIVQKSYNILSSSISFPLEELLLQ----ERFQI 757

Query: 1220 VPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFTVFLLKGCLPAAQALASMI 1041
              ++   S +DEW++SLFA++ IA+ P   +P+  +++ LF   LLKG + AAQAL SM+
Sbjct: 758  AQEVDNSSSRDEWVLSLFAAVTIAVHPQTHIPNTRSIVSLFMTTLLKGNVVAAQALGSMV 817

Query: 1040 NKWPADLNRTELSSSYKLEDAIEVILESLLAVF--SSSPLEECKIVNSTDGSFN-----C 882
            NK        + SS   LE+A+++IL   L +F  +SS   + K+++  D + N      
Sbjct: 818  NKLDLKSTSGQTSSDCTLEEAMDIILNLSLWIFDKNSSSSIQSKMISVHDTALNDLSNGV 877

Query: 881  SSPSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITTVSTDESEI--G 708
             S +SL IHAI+G AWIGK LLMRGHE+V +I M  L+ L SS      +S  E  I   
Sbjct: 878  GSCTSLQIHAILGLAWIGKGLLMRGHEKVNDITMIFLQCLQSSGR--AGISHQEKSISEN 935

Query: 707  NYQ-DMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPVLLXXXXXX 531
            NY+ D+H+ + + AADAF IL+ D E CLN++FHA IRPLYKQRFFS++MPVL       
Sbjct: 936  NYKLDLHNSVMKTAADAFQILIGDCEQCLNREFHAIIRPLYKQRFFSAIMPVL------- 988

Query: 530  XXXSTRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEMTYNLLLVL 351
                 ++++ +         PL++      ++IP LL+GLS LS +++DKE+ Y LLLV+
Sbjct: 989  -----QSLVMKL-------EPLSSTYFHFVQIIPMLLDGLSALSNDVVDKEVLYGLLLVM 1036

Query: 350  SGILMDENGKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPHTRIYPMRP 171
            SGILMD+NG+EA+ ++A            YPHM LVRETA+QCL A+S L H RIYPMR 
Sbjct: 1037 SGILMDKNGQEAVSDSAHTVVNCLVDLTRYPHMTLVRETAVQCLIAISGLSHARIYPMRT 1096

Query: 170  QVLRALVMSLDDRKRVVRQEAVRCRQAWASIASRSLHF 57
            QVL+A++ +LDD KR VR+EAVRCRQAWASIASRSLHF
Sbjct: 1097 QVLQAVIKALDDPKRAVRREAVRCRQAWASIASRSLHF 1134


>ref|XP_006853692.2| PREDICTED: MMS19 nucleotide excision repair protein homolog
            [Amborella trichopoda]
          Length = 1126

 Score =  799 bits (2064), Expect = 0.0
 Identities = 456/1060 (43%), Positives = 649/1060 (61%), Gaps = 23/1060 (2%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LALLRRKS+ G ++ ++   L +++L +++ Q+LA+HDR LC E+L+CLLD +P  I+ L
Sbjct: 76   LALLRRKSHTGTISDNDLINLTKSFLLNIQVQALALHDRLLCLELLECLLDQFPSVISVL 135

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             DEL+ G+L AID EKDPRCLML FH+ E L Q+FPD S      A + F+ILGRYFPIY
Sbjct: 136  DDELVYGVLAAIDEEKDPRCLMLVFHVVELLVQVFPDPS-----VAKDAFDILGRYFPIY 190

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FT    D  +IKR+DLSR +MNAF S+P FE F I                   KYLS+C
Sbjct: 191  FTRPNVDAIDIKREDLSRRMMNAFSSSPLFEPFCIPLLLEKLSSSLEMAKLDALKYLSHC 250

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
               YG   M  HA AIWS LKDVIF+LS  G       E   ++ S+E +++KEAL CL+
Sbjct: 251  APRYGPSRMASHAYAIWSALKDVIFNLSSHGPSISIICELPDNLGSQENEVVKEALVCLE 310

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
              +   + P  E F+ LI++D+D+E  F S+  E+    +  E  ++           +K
Sbjct: 311  NCVLVFDIPKDETFLRLIVEDEDLEMTFRSITSEKCNKDLPHERKQRFCALRNILFTSAK 370

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNMGCKTFSNI-------LNFGALYLCVELLASCR 2109
            VS+ CC+RVF   F RLM+ L +S  +      SN        L+F AL++C+EL+A+  
Sbjct: 371  VSSACCNRVFGSFFQRLMNFLRISSLDSPFDWASNRNSYVCVELDFEALHICLELIAASN 430

Query: 2108 DLT--MVAQDLSPQ-VPDNWWYLLKDFSGPLTYAFRSALVNP------DIVRNAGPEYMT 1956
             L   + +Q++ P    D W  LL+ FSG L +A  S++V        ++  + G E + 
Sbjct: 431  HLANALSSQEVCPTPTQDPWLLLLQSFSGCLVFALGSSVVANKSSSIREMSPSIGEEDLP 490

Query: 1955 CVVKGLQVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIE 1776
              V GLQ+ ATFP  +S +S + +E+IL V MSVIT   ++  LW + L+ LVQ+G+ IE
Sbjct: 491  LKVTGLQILATFPDSYSPLSRDAFENILAVFMSVITERYEETSLWTSTLKALVQVGMSIE 550

Query: 1775 RFHDSEKEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEA 1596
            R+HDS++   +   VIE+             L+L L+AIS+I   G  FM  V  G  EA
Sbjct: 551  RYHDSQRGVCFMTIVIEKLLSYLFNRSTFPPLSLNLKAISEIAMMGLCFMKRVTKGFGEA 610

Query: 1595 IFSNFSVACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNG 1416
            + +NF  A   G+   AE+ + +L+CYS  LLPW  +    ++ +M  A  IW+ ME   
Sbjct: 611  LSTNFLEAVAEGNTKSAEMAIEILKCYSLYLLPWLQNKEGFEEDAMHLATDIWSYMESIS 670

Query: 1415 VLSVELQKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNIL-SRTNFLQLDPLLFPLS- 1242
               +    + LL+ TMMAMKLAVG CT   Q ++V KA+NIL S T +L  D +    S 
Sbjct: 671  -FCIGSHGKSLLEATMMAMKLAVGCCTMNQQSSIVSKAHNILASSTLYLVKDSMSLSTSV 729

Query: 1241 NLEALQSVPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFT-VFLLKGCLPA 1065
             LE L+  P+    +CKD WLISLFAS+VIAL+P   +PD+  ++ LF  V LLKG   +
Sbjct: 730  QLEKLKITPESVSSACKDGWLISLFASVVIALQPQTVIPDLRIILELFMIVVLLKGDEAS 789

Query: 1064 AQALASMINKWPADLNRTELSSSYKLEDAIEVILESLLA--VFSSSPLEECKIVNSTDGS 891
            AQAL S++NKWP   N  E+S +  L +A+++++E      +F+ +  +   + N+ +  
Sbjct: 790  AQALGSIVNKWPVKSN--EVSGACTLGEAMDIMVERGFRPIIFNVNQKKHEDVDNNKEIV 847

Query: 890  FNCSSPSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITTVSTDESEI 711
             +    +   +HA+ G AWIGK L+MRGHE+V++I + LL  +L +   + ++ +    +
Sbjct: 848  SHLPISNDSRVHALFGLAWIGKGLVMRGHEKVKDITLLLLSCVLPTGG-MRSMPSQHDVL 906

Query: 710  GNY--QDMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPVLLXXXX 537
            GN   + ++  + R+AADAFHI++SDSE  +N+KFHATIRPLYKQRF S++MP+LL    
Sbjct: 907  GNDGGESINIAVARSAADAFHIIMSDSETSVNQKFHATIRPLYKQRFCSTVMPILLSSIK 966

Query: 536  XXXXXSTRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEMTYNLLL 357
                  T+++L+R  GHI   TPLAAI+ EA K++PPLL+GLS L+L++ +K+  Y+LL+
Sbjct: 967  ESHSSITKSMLFRTFGHIIIGTPLAAILIEAPKIVPPLLDGLSMLTLDVQNKDQIYDLLV 1026

Query: 356  VLSGILMDENGKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPHTRIYPM 177
            VLSGILMDE GKEA++ENA           +YPH+M+VRETAIQCL A++ALPH RIYPM
Sbjct: 1027 VLSGILMDETGKEAVVENAHTIIGCLSKLVTYPHLMIVRETAIQCLVAMAALPHARIYPM 1086

Query: 176  RPQVLRALVMSLDDRKRVVRQEAVRCRQAWASIASRSLHF 57
            R QVL  +  +LDD+KR VRQEAVRC   WAS+ASRSL F
Sbjct: 1087 RLQVLETVSKALDDQKRSVRQEAVRCHHVWASMASRSLRF 1126


>gb|ERN15159.1| hypothetical protein AMTR_s00056p00136660 [Amborella trichopoda]
          Length = 1160

 Score =  799 bits (2064), Expect = 0.0
 Identities = 456/1060 (43%), Positives = 649/1060 (61%), Gaps = 23/1060 (2%)
 Frame = -1

Query: 3167 LALLRRKSNVGMVTVSEAKMLAETYLADVRAQSLAVHDRKLCFEVLQCLLDAYPEAIAAL 2988
            LALLRRKS+ G ++ ++   L +++L +++ Q+LA+HDR LC E+L+CLLD +P  I+ L
Sbjct: 110  LALLRRKSHTGTISDNDLINLTKSFLLNIQVQALALHDRLLCLELLECLLDQFPSVISVL 169

Query: 2987 ADELICGILDAIDGEKDPRCLMLTFHIAETLTQIFPDQSKLAASFASELFEILGRYFPIY 2808
             DEL+ G+L AID EKDPRCLML FH+ E L Q+FPD S      A + F+ILGRYFPIY
Sbjct: 170  DDELVYGVLAAIDEEKDPRCLMLVFHVVELLVQVFPDPS-----VAKDAFDILGRYFPIY 224

Query: 2807 FTHQRSDDFEIKRDDLSRALMNAFCSTPHFEQFAIXXXXXXXXXXXXXXXXXXXKYLSNC 2628
            FT    D  +IKR+DLSR +MNAF S+P FE F I                   KYLS+C
Sbjct: 225  FTRPNVDAIDIKREDLSRRMMNAFSSSPLFEPFCIPLLLEKLSSSLEMAKLDALKYLSHC 284

Query: 2627 ILHYGADTMFKHAKAIWSGLKDVIFDLSIQGTICPSTSESAADMESKETQILKEALTCLQ 2448
               YG   M  HA AIWS LKDVIF+LS  G       E   ++ S+E +++KEAL CL+
Sbjct: 285  APRYGPSRMASHAYAIWSALKDVIFNLSSHGPSISIICELPDNLGSQENEVVKEALVCLE 344

Query: 2447 MAISQLNCPNSEPFISLILDDQDIERNFESVCLERIYSGISKESHRQXXXXXXXXXXXSK 2268
              +   + P  E F+ LI++D+D+E  F S+  E+    +  E  ++           +K
Sbjct: 345  NCVLVFDIPKDETFLRLIVEDEDLEMTFRSITSEKCNKDLPHERKQRFCALRNILFTSAK 404

Query: 2267 VSTDCCSRVFQKLFLRLMSVLGVSMSNMGCKTFSNI-------LNFGALYLCVELLASCR 2109
            VS+ CC+RVF   F RLM+ L +S  +      SN        L+F AL++C+EL+A+  
Sbjct: 405  VSSACCNRVFGSFFQRLMNFLRISSLDSPFDWASNRNSYVCVELDFEALHICLELIAASN 464

Query: 2108 DLT--MVAQDLSPQ-VPDNWWYLLKDFSGPLTYAFRSALVNP------DIVRNAGPEYMT 1956
             L   + +Q++ P    D W  LL+ FSG L +A  S++V        ++  + G E + 
Sbjct: 465  HLANALSSQEVCPTPTQDPWLLLLQSFSGCLVFALGSSVVANKSSSIREMSPSIGEEDLP 524

Query: 1955 CVVKGLQVFATFPGRFSLVSEEIYEDILQVLMSVITGCSDDRFLWRTALEVLVQIGLHIE 1776
              V GLQ+ ATFP  +S +S + +E+IL V MSVIT   ++  LW + L+ LVQ+G+ IE
Sbjct: 525  LKVTGLQILATFPDSYSPLSRDAFENILAVFMSVITERYEETSLWTSTLKALVQVGMSIE 584

Query: 1775 RFHDSEKEKRYSKFVIERXXXXXXXXXXXXXLALKLEAISKIGTAGPDFMSTVIHGLEEA 1596
            R+HDS++   +   VIE+             L+L L+AIS+I   G  FM  V  G  EA
Sbjct: 585  RYHDSQRGVCFMTIVIEKLLSYLFNRSTFPPLSLNLKAISEIAMMGLCFMKRVTKGFGEA 644

Query: 1595 IFSNFSVACVNGSPGVAEILVPLLECYSNQLLPWCHDFGKNDQVSMQFAVSIWNLMEKNG 1416
            + +NF  A   G+   AE+ + +L+CYS  LLPW  +    ++ +M  A  IW+ ME   
Sbjct: 645  LSTNFLEAVAEGNTKSAEMAIEILKCYSLYLLPWLQNKEGFEEDAMHLATDIWSYMESIS 704

Query: 1415 VLSVELQKQGLLDTTMMAMKLAVGYCTEENQVTLVQKAYNIL-SRTNFLQLDPLLFPLS- 1242
               +    + LL+ TMMAMKLAVG CT   Q ++V KA+NIL S T +L  D +    S 
Sbjct: 705  -FCIGSHGKSLLEATMMAMKLAVGCCTMNQQSSIVSKAHNILASSTLYLVKDSMSLSTSV 763

Query: 1241 NLEALQSVPDMSGLSCKDEWLISLFASLVIALRPHIPLPDVGAVIRLFT-VFLLKGCLPA 1065
             LE L+  P+    +CKD WLISLFAS+VIAL+P   +PD+  ++ LF  V LLKG   +
Sbjct: 764  QLEKLKITPESVSSACKDGWLISLFASVVIALQPQTVIPDLRIILELFMIVVLLKGDEAS 823

Query: 1064 AQALASMINKWPADLNRTELSSSYKLEDAIEVILESLLA--VFSSSPLEECKIVNSTDGS 891
            AQAL S++NKWP   N  E+S +  L +A+++++E      +F+ +  +   + N+ +  
Sbjct: 824  AQALGSIVNKWPVKSN--EVSGACTLGEAMDIMVERGFRPIIFNVNQKKHEDVDNNKEIV 881

Query: 890  FNCSSPSSLHIHAIVGSAWIGKSLLMRGHERVREIAMCLLKYLLSSQNKITTVSTDESEI 711
             +    +   +HA+ G AWIGK L+MRGHE+V++I + LL  +L +   + ++ +    +
Sbjct: 882  SHLPISNDSRVHALFGLAWIGKGLVMRGHEKVKDITLLLLSCVLPTGG-MRSMPSQHDVL 940

Query: 710  GNY--QDMHSLLTRAAADAFHILLSDSEACLNKKFHATIRPLYKQRFFSSMMPVLLXXXX 537
            GN   + ++  + R+AADAFHI++SDSE  +N+KFHATIRPLYKQRF S++MP+LL    
Sbjct: 941  GNDGGESINIAVARSAADAFHIIMSDSETSVNQKFHATIRPLYKQRFCSTVMPILLSSIK 1000

Query: 536  XXXXXSTRAVLYRALGHIFFDTPLAAIVAEAKKVIPPLLEGLSTLSLEILDKEMTYNLLL 357
                  T+++L+R  GHI   TPLAAI+ EA K++PPLL+GLS L+L++ +K+  Y+LL+
Sbjct: 1001 ESHSSITKSMLFRTFGHIIIGTPLAAILIEAPKIVPPLLDGLSMLTLDVQNKDQIYDLLV 1060

Query: 356  VLSGILMDENGKEAIIENAXXXXXXXXXXXSYPHMMLVRETAIQCLTALSALPHTRIYPM 177
            VLSGILMDE GKEA++ENA           +YPH+M+VRETAIQCL A++ALPH RIYPM
Sbjct: 1061 VLSGILMDETGKEAVVENAHTIIGCLSKLVTYPHLMIVRETAIQCLVAMAALPHARIYPM 1120

Query: 176  RPQVLRALVMSLDDRKRVVRQEAVRCRQAWASIASRSLHF 57
            R QVL  +  +LDD+KR VRQEAVRC   WAS+ASRSL F
Sbjct: 1121 RLQVLETVSKALDDQKRSVRQEAVRCHHVWASMASRSLRF 1160