BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00010520
         (2567 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008793802.1| PREDICTED: chloroplastic group IIA intron sp...   874   0.0  
ref|XP_008793805.1| PREDICTED: chloroplastic group IIA intron sp...   852   0.0  
ref|XP_010928535.1| PREDICTED: LOW QUALITY PROTEIN: chloroplasti...   838   0.0  
ref|XP_009419882.1| PREDICTED: chloroplastic group IIA intron sp...   837   0.0  
ref|XP_010255197.1| PREDICTED: chloroplastic group IIA intron sp...   799   0.0  
emb|CBI34982.3| unnamed protein product [Vitis vinifera]              784   0.0  
ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron sp...   784   0.0  
ref|XP_010660973.1| PREDICTED: chloroplastic group IIA intron sp...   783   0.0  
ref|XP_008230671.1| PREDICTED: chloroplastic group IIA intron sp...   774   0.0  
ref|XP_008230670.1| PREDICTED: chloroplastic group IIA intron sp...   774   0.0  
ref|XP_012483760.1| PREDICTED: chloroplastic group IIA intron sp...   769   0.0  
ref|XP_012483758.1| PREDICTED: chloroplastic group IIA intron sp...   769   0.0  
ref|XP_007217083.1| hypothetical protein PRUPE_ppa000515mg [Prun...   766   0.0  
gb|KJB33714.1| hypothetical protein B456_006G027700 [Gossypium r...   765   0.0  
gb|KJB33713.1| hypothetical protein B456_006G027700 [Gossypium r...   765   0.0  
emb|CDP02160.1| unnamed protein product [Coffea canephora]            764   0.0  
gb|KHG23499.1| Chloroplastic group IIA intron splicing facilitat...   764   0.0  
ref|XP_012483761.1| PREDICTED: chloroplastic group IIA intron sp...   764   0.0  
ref|XP_007031356.1| CRM family member 2, putative isoform 2 [The...   757   0.0  
ref|XP_011047274.1| PREDICTED: chloroplastic group IIA intron sp...   756   0.0  

>ref|XP_008793802.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Phoenix dactylifera]
            gi|672139996|ref|XP_008793803.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            isoform X1 [Phoenix dactylifera]
            gi|672139998|ref|XP_008793804.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            isoform X1 [Phoenix dactylifera]
          Length = 1052

 Score =  874 bits (2259), Expect = 0.0
 Identities = 481/764 (62%), Positives = 561/764 (73%), Gaps = 12/764 (1%)
 Frame = -2

Query: 2335 ESASNSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG---EIFIPTPQELPKHRVGYTID 2165
            E+ + SAIQRIS+KLRSLGYL               G   EIFIPTP E+PK RVG+TID
Sbjct: 58   ETLAKSAIQRISEKLRSLGYLADEPTKSADRPPTGPGSAGEIFIPTPHEIPKRRVGHTID 117

Query: 2164 SSWSTPENPVPEPGAG--LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAAELRRL 1991
            SSWSTPE+PVPEPG+G  +TRF  LW                 VP VAELTIPA  L+RL
Sbjct: 118  SSWSTPEHPVPEPGSGGTITRFNYLWSREKEQEKEKKASKEV-VPTVAELTIPAEVLKRL 176

Query: 1990 RSVGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTG 1811
            RS GIRL+KRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTG
Sbjct: 177  RSEGIRLQKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTG 236

Query: 1810 GLVVWRSGSIIILYRGANYQYPYFSNEGQIDSNLENISEDPRVIDVASTEQEGNTLSASA 1631
            GLVVWRSGSIIILYRGANY+YPYF    Q+  N++ +S +  + D A  +Q  N++ A  
Sbjct: 237  GLVVWRSGSIIILYRGANYKYPYFHYGDQMRKNVDEVSPESSMEDGALDKQGVNSMPACI 296

Query: 1630 VDPSPKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFTDWWGYEPL 1451
            V  S  S    + S LV GVGSPN+VRLQ PGE QLEEEADRLLDGLGPRFT+WWGY+PL
Sbjct: 297  VKSSSGSFATSAQSFLVIGVGSPNKVRLQQPGEAQLEEEADRLLDGLGPRFTNWWGYDPL 356

Query: 1450 PVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGRNRNLQGLA 1271
            PVDADLLPAIVPGFRKPFRLLPFG+KPKLTDREMTILRRLSR LPCHFALGRNRN QGLA
Sbjct: 357  PVDADLLPAIVPGFRKPFRLLPFGIKPKLTDREMTILRRLSRHLPCHFALGRNRNHQGLA 416

Query: 1270 VSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFYRGKDFLPS 1091
            VSMIKLWEKCE+AKIA+KRGVQNTNSE+M EELKQLTGG LLS+DKE+IVFYRGKDFLP 
Sbjct: 417  VSMIKLWEKCEVAKIAIKRGVQNTNSELMAEELKQLTGGTLLSKDKEYIVFYRGKDFLPP 476

Query: 1090 AVSTAMEERRNSKVGRQKRICHDSSMDTTAATP-LGVVKPALVDELPEATKVTQSISIKS 914
            AVS A+EERRN  +G +++         T   P L  V+ A  DE P   K  +  ++ +
Sbjct: 477  AVSLAIEERRNGGIGIKRQNTDGRGRVATIDAPELEFVRAASADE-PHG-KAEEKRALST 534

Query: 913  KLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDREDITEEERYMLRKV 734
            + +P + A+ERV                      K VEP  VESD+E I+EEERYMLRKV
Sbjct: 535  ERRPRT-ALERVETKLFQVMEEKEKAEKLLKELEKPVEPLKVESDKEGISEEERYMLRKV 593

Query: 733  GMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVESAARTLEAESGGIL 554
            G+RM+PFLLLGRRGVF+GTVENMHLHWKYREL+KIISKDR IE+VE AAR LEAESGGIL
Sbjct: 594  GLRMQPFLLLGRRGVFAGTVENMHLHWKYRELIKIISKDRCIENVERAARILEAESGGIL 653

Query: 553  VAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRCASLKLHVLSLSRD 374
            VAVERV+KGHAII+YRGKNY+RP++LRP+TLLSK+EAMKRSLEAQR  SLKL VL+LSR+
Sbjct: 654  VAVERVSKGHAIIVYRGKNYKRPSNLRPQTLLSKREAMKRSLEAQRSKSLKLRVLNLSRN 713

Query: 373  IDRLQHQMA--KESSAMNTMQLTERDK-SDVEDEMNEPXXXXXXXXXXXXXSYHHENTEE 203
            IDRL+HQM+  K+ S  +++QLTE ++ S   +  ++              ++  E+ EE
Sbjct: 714  IDRLKHQMSQVKDGSLEDSVQLTEHERISSAAETNDQSGSTLEDRNGSADFTFQQESAEE 773

Query: 202  VNEAAADCLHSNKHDCIPNDEKESTITN---NVITSTLSLNLRE 80
            V+E  ++ +HS  H    N  +   I N   NV+ S   LN  E
Sbjct: 774  VHEIHSESMHSKDHG--HNSRENGEIVNEPSNVVGSAFPLNSLE 815


>ref|XP_008793805.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Phoenix dactylifera]
          Length = 1001

 Score =  852 bits (2202), Expect = 0.0
 Identities = 462/697 (66%), Positives = 528/697 (75%), Gaps = 8/697 (1%)
 Frame = -2

Query: 2335 ESASNSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG---EIFIPTPQELPKHRVGYTID 2165
            E+ + SAIQRIS+KLRSLGYL               G   EIFIPTP E+PK RVG+TID
Sbjct: 58   ETLAKSAIQRISEKLRSLGYLADEPTKSADRPPTGPGSAGEIFIPTPHEIPKRRVGHTID 117

Query: 2164 SSWSTPENPVPEPGAG--LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAAELRRL 1991
            SSWSTPE+PVPEPG+G  +TRF  LW                 VP VAELTIPA  L+RL
Sbjct: 118  SSWSTPEHPVPEPGSGGTITRFNYLWSREKEQEKEKKASKEV-VPTVAELTIPAEVLKRL 176

Query: 1990 RSVGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTG 1811
            RS GIRL+KRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTG
Sbjct: 177  RSEGIRLQKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTG 236

Query: 1810 GLVVWRSGSIIILYRGANYQYPYFSNEGQIDSNLENISEDPRVIDVASTEQEGNTLSASA 1631
            GLVVWRSGSIIILYRGANY+YPYF    Q+  N++ +S +  + D A  +Q  N++ A  
Sbjct: 237  GLVVWRSGSIIILYRGANYKYPYFHYGDQMRKNVDEVSPESSMEDGALDKQGVNSMPACI 296

Query: 1630 VDPSPKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFTDWWGYEPL 1451
            V  S  S    + S LV GVGSPN+VRLQ PGE QLEEEADRLLDGLGPRFT+WWGY+PL
Sbjct: 297  VKSSSGSFATSAQSFLVIGVGSPNKVRLQQPGEAQLEEEADRLLDGLGPRFTNWWGYDPL 356

Query: 1450 PVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGRNRNLQGLA 1271
            PVDADLLPAIVPGFRKPFRLLPFG+KPKLTDREMTILRRLSR LPCHFALGRNRN QGLA
Sbjct: 357  PVDADLLPAIVPGFRKPFRLLPFGIKPKLTDREMTILRRLSRHLPCHFALGRNRNHQGLA 416

Query: 1270 VSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFYRGKDFLPS 1091
            VSMIKLWEKCE+AKIA+KRGVQNTNSE+M EELKQLTGG LLS+DKE+IVFYRGKDFLP 
Sbjct: 417  VSMIKLWEKCEVAKIAIKRGVQNTNSELMAEELKQLTGGTLLSKDKEYIVFYRGKDFLPP 476

Query: 1090 AVSTAMEERRNSKVGRQKRICHDSSMDTTAATP-LGVVKPALVDELPEATKVTQSISIKS 914
            AVS A+EERRN  +G +++         T   P L  V+ A  DE P   K  +  ++ +
Sbjct: 477  AVSLAIEERRNGGIGIKRQNTDGRGRVATIDAPELEFVRAASADE-PHG-KAEEKRALST 534

Query: 913  KLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDREDITEEERYMLRKV 734
            + +P + A+ERV                      K VEP  VESD+E I+EEERYMLRKV
Sbjct: 535  ERRPRT-ALERVETKLFQVMEEKEKAEKLLKELEKPVEPLKVESDKEGISEEERYMLRKV 593

Query: 733  GMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVESAARTLEAESGGIL 554
            G+RM+PFLLLGRRGVF+GTVENMHLHWKYREL+KIISKDR IE+VE AAR LEAESGGIL
Sbjct: 594  GLRMQPFLLLGRRGVFAGTVENMHLHWKYRELIKIISKDRCIENVERAARILEAESGGIL 653

Query: 553  VAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRCASLKLHVLSLSRD 374
            VAVERV+KGHAII+YRGKNY+RP++LRP+TLLSK+EAMKRSLEAQR  SLKL VL+LSR+
Sbjct: 654  VAVERVSKGHAIIVYRGKNYKRPSNLRPQTLLSKREAMKRSLEAQRSKSLKLRVLNLSRN 713

Query: 373  IDRLQHQMAKESSAMNTMQLTERDKSDVE--DEMNEP 269
            IDRL+HQM        +M   +   +  E  + +NEP
Sbjct: 714  IDRLKHQMEVHEIHSESMHSKDHGHNSRENGEIVNEP 750


>ref|XP_010928535.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
            splicing facilitator CRS1, chloroplastic [Elaeis
            guineensis]
          Length = 1019

 Score =  838 bits (2165), Expect = 0.0
 Identities = 469/764 (61%), Positives = 538/764 (70%), Gaps = 12/764 (1%)
 Frame = -2

Query: 2335 ESASNSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG---EIFIPTPQELPKHRVGYTID 2165
            E+ + SAIQRIS+KLRSLGYL               G   EIFIPTPQELPK RVG+TID
Sbjct: 58   ETLAKSAIQRISEKLRSLGYLADDPTKSADRPPTGPGSAGEIFIPTPQELPKRRVGHTID 117

Query: 2164 SSWSTPENPVPEPGAG--LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAAELRRL 1991
            SSWSTPE+PVPEPG+G  +TRF  LW                 VPMVAEL IPA EL+RL
Sbjct: 118  SSWSTPEHPVPEPGSGATITRFHYLWSREKEQEKEKKASKEV-VPMVAELMIPAEELKRL 176

Query: 1990 RSVGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTG 1811
            RS GIRL+KRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTG
Sbjct: 177  RSEGIRLQKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTG 236

Query: 1810 GLVVWRSGSIIILYRGANYQYPYFSNEGQIDSNLENISEDPRVIDVASTEQEGNTLSASA 1631
            GLVVWRSGSIIILYRG NY+YPYF                    D   T  +G +L +S 
Sbjct: 237  GLVVWRSGSIIILYRGTNYKYPYF-----------------HCGDEMKTNADGESLESSM 279

Query: 1630 VDPSPKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFTDWWGYEPL 1451
             D                G      VRLQ PGE QLEEEA+RLLDGLGPRFTDWWGY+PL
Sbjct: 280  ED----------------GALDKQGVRLQQPGEAQLEEEANRLLDGLGPRFTDWWGYDPL 323

Query: 1450 PVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGRNRNLQGLA 1271
            PVDADLLPAI+PGFRKPFRLLPFG+KPKLTDREMT LRRLSR LPCHFALGRNRN QGLA
Sbjct: 324  PVDADLLPAIIPGFRKPFRLLPFGIKPKLTDREMTTLRRLSRHLPCHFALGRNRNHQGLA 383

Query: 1270 VSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFYRGKDFLPS 1091
            VSMIKLWEKCE+ KIA+KRGVQNTNSE+M EELKQLTGG LLSRDKE+I+FYRGKDFLP 
Sbjct: 384  VSMIKLWEKCEVVKIAIKRGVQNTNSELMAEELKQLTGGTLLSRDKEYIIFYRGKDFLPP 443

Query: 1090 AVSTAMEERRNSKVGRQKRICHDSSMDTTAATP-LGVVKPALVDELPEATKVTQSISIKS 914
            AVS A+EERRN  +G QK++   S    T   P    V+ A VDE     +  +++S + 
Sbjct: 444  AVSLAIEERRNGGIGIQKQMTDGSGRVATIDAPEPEFVRAASVDESHGKAEEKRALSAER 503

Query: 913  KLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDREDITEEERYMLRKV 734
            +LK    ++ERV                      K VEP  VESD+E I+EEER+MLRKV
Sbjct: 504  RLK---TSLERVETKLFQVMEKKEKAEKLLKELEKPVEPLKVESDKEGISEEERHMLRKV 560

Query: 733  GMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVESAARTLEAESGGIL 554
            G+RMKPFLLLGRRGVF+GTVENMHLHWKYRELVKI SKDR IE+VE AAR LEAESGGIL
Sbjct: 561  GLRMKPFLLLGRRGVFAGTVENMHLHWKYRELVKITSKDRCIENVECAARILEAESGGIL 620

Query: 553  VAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRCASLKLHVLSLSRD 374
            VAVERV+KGHAII+YRGKNYRRP++LRP+TLLSK+EAMK SLEAQR  SLKLHVL+LSR+
Sbjct: 621  VAVERVSKGHAIIVYRGKNYRRPSNLRPQTLLSKREAMKCSLEAQRSESLKLHVLNLSRN 680

Query: 373  IDRLQHQMA--KESSAMNTMQLTERDK-SDVEDEMNEPXXXXXXXXXXXXXSYHHENTEE 203
            ID+L+HQM+  K  S  +++QLTE ++ S   +  ++              +   E+ EE
Sbjct: 681  IDQLKHQMSQVKAGSLEDSVQLTEHERISSAAETNDQSGSTLEDRNGFVDFTCQRESAEE 740

Query: 202  VNEAAADCLHSNKHDCIPNDEKESTITN---NVITSTLSLNLRE 80
            V+E  ++ +HS  H    N  +   I N   N++ S L LN  E
Sbjct: 741  VHEIHSESMHSEDHG--HNSRENGEIVNAPSNMVGSALPLNSLE 782


>ref|XP_009419882.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Musa acuminata subsp. malaccensis]
          Length = 999

 Score =  837 bits (2163), Expect = 0.0
 Identities = 446/747 (59%), Positives = 544/747 (72%), Gaps = 8/747 (1%)
 Frame = -2

Query: 2338 PESASNSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG---EIFIPTPQELPKHRVGYTI 2168
            PE+ + SAIQRIS+KLRSLGYLE              G   EIFIPT +E+P  RVGYTI
Sbjct: 59   PETLAKSAIQRISEKLRSLGYLENGPATAADRPATGRGSAGEIFIPTSREIPSRRVGYTI 118

Query: 2167 DSSWSTPENPVPEPGAGLT--RFRELWXXXXXXXXXXXXXXXXEVP-MVAELTIPAAELR 1997
            DSSWSTPE+PVPEPG+G+T  RF +LW                  P MVAELTIP  EL+
Sbjct: 119  DSSWSTPEHPVPEPGSGVTINRFGDLWRREKERQAAARATKDAAAPPMVAELTIPPEELK 178

Query: 1996 RLRSVGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERK 1817
            RLR  G+RL KRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERK
Sbjct: 179  RLRREGVRLAKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERK 238

Query: 1816 TGGLVVWRSGSIIILYRGANYQYPYFSNEGQIDSNLENISEDPRVIDVASTEQEGNTLSA 1637
            TGGLV+WRSGSIIILYRG NY+YPY+ +  + +   + +S    + +  + +QE N+   
Sbjct: 239  TGGLVIWRSGSIIILYRGVNYKYPYYYDGDKKNEIFDEVSLPSGLYNEETNKQEVNSPKM 298

Query: 1636 SAVDPSPKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFTDWWGYE 1457
             + + S +SP   + SLLV GVGSP +VR+QL GEVQLEEEADRLLDGLGPRFTDWWG +
Sbjct: 299  ISANSSAESPTAPARSLLVVGVGSPKKVRVQLEGEVQLEEEADRLLDGLGPRFTDWWGCD 358

Query: 1456 PLPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGRNRNLQG 1277
            PLPVDADLLPA+VPGFRKP RL+PFG+KPKLTDREMTILRRL RPLPCHFALGR+RNLQG
Sbjct: 359  PLPVDADLLPAVVPGFRKPLRLIPFGIKPKLTDREMTILRRLGRPLPCHFALGRSRNLQG 418

Query: 1276 LAVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFYRGKDFL 1097
            LAVSMIKLWE+CEIAKIAVKRGVQNTNS +M EELKQLTGG LLSRDKEFIVFYRGKDFL
Sbjct: 419  LAVSMIKLWERCEIAKIAVKRGVQNTNSIMMAEELKQLTGGTLLSRDKEFIVFYRGKDFL 478

Query: 1096 PSAVSTAMEERRNSKVGRQKRICHDS-SMDTTAATPLGVVKPALVDELPEATKVTQSISI 920
            P AVS A+EERRN    +QKR   ++  + +   +   + K  L DE  E  +  ++ ++
Sbjct: 479  PPAVSIAIEERRNYGSNKQKRNSDENHPVASINVSETKISKITLPDEPKEGAEQIRNFAL 538

Query: 919  KSKLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDREDITEEERYMLR 740
            +S+    ++A +R+                        VEPP  E D+E I+EEERYMLR
Sbjct: 539  ESRKTSVNVAFQRMETRLSQAIKKKEKAEKFISELEPLVEPPKFEVDKEAISEEERYMLR 598

Query: 739  KVGMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVESAARTLEAESGG 560
            K+G+RMKPFLLLGRRGVF GTVENMHLHWKYRELVKIISKDR ++++E+AAR LEAESGG
Sbjct: 599  KIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDRCMKNIETAARILEAESGG 658

Query: 559  ILVAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRCASLKLHVLSLS 380
            ILVAVERV+KG+AII+YRGKNY+RP  LRP TLL+++EAM  SLEAQRC SLKLHVL++S
Sbjct: 659  ILVAVERVSKGYAIIVYRGKNYQRPVTLRPTTLLNRREAMIHSLEAQRCESLKLHVLNIS 718

Query: 379  RDIDRLQHQMAKESSAMNTMQLTE-RDKSDVEDEMNEPXXXXXXXXXXXXXSYHHENTEE 203
            R++++++HQM ++ S ++++ + +    S+V    +E                +  + E 
Sbjct: 719  RNLNQMKHQMVQDDSLIDSVAVDKCMTSSNVIATTDETGFGEMEDN-------NSVDCEG 771

Query: 202  VNEAAADCLHSNKHDCIPNDEKESTIT 122
            V++  ++ LH  +   I ND K+S  T
Sbjct: 772  VHDTDSEPLHVGESSDITNDMKQSVST 798


>ref|XP_010255197.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Nelumbo nucifera]
          Length = 1034

 Score =  799 bits (2063), Expect = 0.0
 Identities = 432/695 (62%), Positives = 500/695 (71%), Gaps = 8/695 (1%)
 Frame = -2

Query: 2332 SASNSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG--EIFIPTPQELPKHRVGYTIDSS 2159
            + S +AIQRIS+KLRSLGYLE                 EIFIP   ELPK+RVGYTIDSS
Sbjct: 53   TVSKTAIQRISEKLRSLGYLEDNSRESQQPETNHGSAGEIFIPFSHELPKYRVGYTIDSS 112

Query: 2158 WSTPENPVPEPGAG--LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAAELRRLRS 1985
            WSTPENPVP PG+G  L+RF+EL                   P +AELTIP  EL+RL +
Sbjct: 113  WSTPENPVPHPGSGAALSRFQEL--KRKVEKQKRSTKKEERAPTLAELTIPEQELKRLIT 170

Query: 1984 VGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGL 1805
            +GI L+K+LKVGKAGITEGIVNGIHERWRRSELVKI+ EDLC MNMKRTH+ILERKTGGL
Sbjct: 171  IGIGLKKKLKVGKAGITEGIVNGIHERWRRSELVKIRFEDLCSMNMKRTHDILERKTGGL 230

Query: 1804 VVWRSGSIIILYRGANYQYPYFSNEGQIDSNLENISEDPRVIDVASTEQEGNTLSASAVD 1625
            VVWRSGS IILYRGANY+YPYF       S+  N +         S    G+T S   VD
Sbjct: 231  VVWRSGSTIILYRGANYEYPYFKANKNTASDTSNTN---------SGGDGGSTNSLHKVD 281

Query: 1624 PSPKSP---NGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFTDWWGYEP 1454
                     NG++   LV GVGSP++VR QL GE++  EEAD LLDGLGPRFTDWWGY+P
Sbjct: 282  KESAQTGQSNGIACPPLVHGVGSPDKVRFQLQGEIEFAEEADCLLDGLGPRFTDWWGYDP 341

Query: 1453 LPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGRNRNLQGL 1274
            LPVDADLLPA+VPG+RKPFRLLP+G++PKLT+ EMTILRRLSRPLPCHFALGRNR LQGL
Sbjct: 342  LPVDADLLPAVVPGYRKPFRLLPYGIQPKLTNDEMTILRRLSRPLPCHFALGRNRKLQGL 401

Query: 1273 AVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFYRGKDFLP 1094
            AVSM+KLWEKCEIAKIAVKRGVQNTNSE+M EELK+LTGG+LLSRD EFIVFYRGKDFLP
Sbjct: 402  AVSMVKLWEKCEIAKIAVKRGVQNTNSELMAEELKRLTGGILLSRDVEFIVFYRGKDFLP 461

Query: 1093 SAVSTAMEERRNSKVGRQK-RICHDSSMDTTAATPLGVVKPALVDELPEATKVTQSISIK 917
             +VSTA+EERR    GR K R+ + S +D    T +        ++        +++   
Sbjct: 462  PSVSTAIEERRKHGTGRSKQRVENSSLIDNMPETDIKTAGHPSANKFEGGYDQKRNLISD 521

Query: 916  SKLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDREDITEEERYMLRK 737
               + +  AI R+                      K+VEP   ESDRE ITEEERYMLRK
Sbjct: 522  KTKESSKSAIYRITTKLSLALEKKTKAEKLLADLEKAVEPQKQESDREGITEEERYMLRK 581

Query: 736  VGMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVESAARTLEAESGGI 557
            VG+RMKPFLLLGRRGVF GTVENMHLHWKYRELVK+IS +RSIE V+  ARTLEAESGGI
Sbjct: 582  VGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVISSERSIEDVQRTARTLEAESGGI 641

Query: 556  LVAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRCASLKLHVLSLSR 377
            LVAVERVNKG AII+YRGKNY+RP DLRP+TLL+KK AMKRSLEAQR  SLKLH+L L+R
Sbjct: 642  LVAVERVNKGCAIIVYRGKNYQRPVDLRPRTLLNKKAAMKRSLEAQRHKSLKLHILRLTR 701

Query: 376  DIDRLQHQMAKESSAMNTMQLTERDKSDVEDEMNE 272
            DID+L+ Q+  E+   N +Q T +   D E   +E
Sbjct: 702  DIDQLKLQLGNENMKTNCLQSTAQKIPDTESVTSE 736


>emb|CBI34982.3| unnamed protein product [Vitis vinifera]
          Length = 1028

 Score =  784 bits (2024), Expect = 0.0
 Identities = 417/696 (59%), Positives = 501/696 (71%), Gaps = 17/696 (2%)
 Frame = -2

Query: 2335 ESASNSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG----EIFIPTPQELPKHRVGYTI 2168
            ++   +AIQRI++KLRSLGY++                   EIF+P P +LPKHRVG+TI
Sbjct: 75   QTLPKTAIQRIAEKLRSLGYVDGDESRKVLSSDKPANGSAGEIFVPLPNQLPKHRVGHTI 134

Query: 2167 DSSWSTPENPVPEPGAG--LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAAELRR 1994
            D SWS PENPVPEPG G  +TRF EL                   P +AELT+P  ELRR
Sbjct: 135  DQSWSLPENPVPEPGTGGVITRFHEL-RKEVKREKKLVRKEDERAPTLAELTLPEEELRR 193

Query: 1993 LRSVGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKT 1814
            L+ +GI++ K+LKVGKAGITEGIVNGIHERWRR+E+VKI+CED+C++NMKRTH+ILERKT
Sbjct: 194  LKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKT 253

Query: 1813 GGLVVWRSGSIIILYRGANYQYPYFSNEGQIDSNLENISEDPRVID--VASTEQEGNTLS 1640
            GGLV+WRSGS IILYRGANY+YPYF +    D+NL N S      D  + + E +G  + 
Sbjct: 254  GGLVIWRSGSYIILYRGANYKYPYFLS----DNNLPNDSSHDASSDSQMNNEEHDGKEVC 309

Query: 1639 ASAV----DPSPKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFTD 1472
            +S         P   N ++   L+ GVG P RVR QLPGE QLEEEADRLLDGLGPRFTD
Sbjct: 310  SSGKGDVKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEEADRLLDGLGPRFTD 369

Query: 1471 WWGYEPLPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGRN 1292
            WWGY+PLP+DADLLPA+VPG+R+PFRLLP+G+KPKLT+ EMT+LRRL RPLPCHFALGRN
Sbjct: 370  WWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRN 429

Query: 1291 RNLQGLAVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFYR 1112
            R LQGLA SMIKLWEKCEIAKIAVKRGVQNTNSE+M EELK LTGG LLSRD+EFIVFYR
Sbjct: 430  RKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFYR 489

Query: 1111 GKDFLPSAVSTAMEERRNSKVGRQK-RICHDSSMDTTAATPLGVVKPALVDELPEAT--K 941
            GKDFLP AVS+A+E RR   + R K +I H         + LG  + A  D+  + T  +
Sbjct: 490  GKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHA-SDKDCDGTDDQ 548

Query: 940  VTQSISIKSKLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDREDITE 761
             T S+S +  L+ A   +ER                       ++  P   E D+E ITE
Sbjct: 549  KTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITE 608

Query: 760  EERYMLRKVGMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVESAART 581
            EERYMLRKVG+RMKPFLLLGRRG+F GTVENMHLHWKYRELVKIIS  RSIE +   ART
Sbjct: 609  EERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVART 668

Query: 580  LEAESGGILVAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRCASLK 401
            LEAESGGILVAVERV+KG+AII+YRGKNY+RPA LRP+TLL+K+EA+KRSLEAQR  SLK
Sbjct: 669  LEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRESLK 728

Query: 400  LHVLSLSRDIDRLQHQMAK--ESSAMNTMQLTERDK 299
            LHVL L+R+ID L+HQ+    +    N+ QL ++ +
Sbjct: 729  LHVLRLTRNIDELKHQLVSRIKDKETNSKQLVDKSR 764


>ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Vitis vinifera]
            gi|731419290|ref|XP_010660972.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            isoform X1 [Vitis vinifera]
          Length = 1044

 Score =  784 bits (2024), Expect = 0.0
 Identities = 417/696 (59%), Positives = 501/696 (71%), Gaps = 17/696 (2%)
 Frame = -2

Query: 2335 ESASNSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG----EIFIPTPQELPKHRVGYTI 2168
            ++   +AIQRI++KLRSLGY++                   EIF+P P +LPKHRVG+TI
Sbjct: 75   QTLPKTAIQRIAEKLRSLGYVDGDESRKVLSSDKPANGSAGEIFVPLPNQLPKHRVGHTI 134

Query: 2167 DSSWSTPENPVPEPGAG--LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAAELRR 1994
            D SWS PENPVPEPG G  +TRF EL                   P +AELT+P  ELRR
Sbjct: 135  DQSWSLPENPVPEPGTGGVITRFHEL-RKEVKREKKLVRKEDERAPTLAELTLPEEELRR 193

Query: 1993 LRSVGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKT 1814
            L+ +GI++ K+LKVGKAGITEGIVNGIHERWRR+E+VKI+CED+C++NMKRTH+ILERKT
Sbjct: 194  LKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKT 253

Query: 1813 GGLVVWRSGSIIILYRGANYQYPYFSNEGQIDSNLENISEDPRVID--VASTEQEGNTLS 1640
            GGLV+WRSGS IILYRGANY+YPYF +    D+NL N S      D  + + E +G  + 
Sbjct: 254  GGLVIWRSGSYIILYRGANYKYPYFLS----DNNLPNDSSHDASSDSQMNNEEHDGKEVC 309

Query: 1639 ASAV----DPSPKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFTD 1472
            +S         P   N ++   L+ GVG P RVR QLPGE QLEEEADRLLDGLGPRFTD
Sbjct: 310  SSGKGDVKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEEADRLLDGLGPRFTD 369

Query: 1471 WWGYEPLPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGRN 1292
            WWGY+PLP+DADLLPA+VPG+R+PFRLLP+G+KPKLT+ EMT+LRRL RPLPCHFALGRN
Sbjct: 370  WWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRN 429

Query: 1291 RNLQGLAVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFYR 1112
            R LQGLA SMIKLWEKCEIAKIAVKRGVQNTNSE+M EELK LTGG LLSRD+EFIVFYR
Sbjct: 430  RKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFYR 489

Query: 1111 GKDFLPSAVSTAMEERRNSKVGRQK-RICHDSSMDTTAATPLGVVKPALVDELPEAT--K 941
            GKDFLP AVS+A+E RR   + R K +I H         + LG  + A  D+  + T  +
Sbjct: 490  GKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHA-SDKDCDGTDDQ 548

Query: 940  VTQSISIKSKLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDREDITE 761
             T S+S +  L+ A   +ER                       ++  P   E D+E ITE
Sbjct: 549  KTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITE 608

Query: 760  EERYMLRKVGMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVESAART 581
            EERYMLRKVG+RMKPFLLLGRRG+F GTVENMHLHWKYRELVKIIS  RSIE +   ART
Sbjct: 609  EERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVART 668

Query: 580  LEAESGGILVAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRCASLK 401
            LEAESGGILVAVERV+KG+AII+YRGKNY+RPA LRP+TLL+K+EA+KRSLEAQR  SLK
Sbjct: 669  LEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRESLK 728

Query: 400  LHVLSLSRDIDRLQHQMAK--ESSAMNTMQLTERDK 299
            LHVL L+R+ID L+HQ+    +    N+ QL ++ +
Sbjct: 729  LHVLRLTRNIDELKHQLVSRIKDKETNSKQLVDKSR 764


>ref|XP_010660973.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Vitis vinifera]
          Length = 1044

 Score =  783 bits (2022), Expect = 0.0
 Identities = 417/696 (59%), Positives = 501/696 (71%), Gaps = 17/696 (2%)
 Frame = -2

Query: 2335 ESASNSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG----EIFIPTPQELPKHRVGYTI 2168
            ++   +AIQRI++KLRSLGY++                   EIF+P P +LPKHRVG+TI
Sbjct: 75   QTLPKTAIQRIAEKLRSLGYVDGDESRKVLSSDKPANGSAGEIFVPLPNQLPKHRVGHTI 134

Query: 2167 DSSWSTPENPVPEPGAG--LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAAELRR 1994
            D SWS PENPVPEPG G  +TRF EL                   P +AELT+P  ELRR
Sbjct: 135  DQSWSLPENPVPEPGTGGVITRFHEL-RKEVKREKKLVRKEDERAPTLAELTLPEEELRR 193

Query: 1993 LRSVGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKT 1814
            L+ +GI++ K+LKVGKAGITEGIVNGIHERWRR+E+VKI+CED+C++NMKRTH+ILERKT
Sbjct: 194  LKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKT 253

Query: 1813 GGLVVWRSGSIIILYRGANYQYPYFSNEGQIDSNLENISEDPRVID--VASTEQEGNTLS 1640
            GGLV+WRSGS IILYRGANY+YPYF +    D+NL N S      D  + + E +G  + 
Sbjct: 254  GGLVIWRSGSYIILYRGANYKYPYFLS----DNNLPNDSSHDASSDSQMNNEEHDGKEVC 309

Query: 1639 ASAV----DPSPKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFTD 1472
            +S         P   N ++   L+ GVG P RVR QLPGE QLEEEADRLLDGLGPRFTD
Sbjct: 310  SSGKGDVKSAGPMPANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEEADRLLDGLGPRFTD 369

Query: 1471 WWGYEPLPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGRN 1292
            WWGY+PLP+DADLLPA+VPG+R+PFRLLP+G+KPKLT+ EMT+LRRL RPLPCHFALGRN
Sbjct: 370  WWGYDPLPIDADLLPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRN 429

Query: 1291 RNLQGLAVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFYR 1112
            R LQGLA SMIKLWEKCEIAKIAVKRGVQNTNSE+M EELK LTGG LLSRD+EFIVFYR
Sbjct: 430  RKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEMMAEELKNLTGGTLLSRDREFIVFYR 489

Query: 1111 GKDFLPSAVSTAMEERRNSKVGRQK-RICHDSSMDTTAATPLGVVKPALVDELPEAT--K 941
            GKDFLP AVS+A+E RR   + R K +I H         + LG  + A  D+  + T  +
Sbjct: 490  GKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHA-SDKDCDGTDDQ 548

Query: 940  VTQSISIKSKLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDREDITE 761
             T S+S +  L+ A   +ER                       ++  P   E D+E ITE
Sbjct: 549  KTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAELEEAQIPQQPEIDKEGITE 608

Query: 760  EERYMLRKVGMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVESAART 581
            EERYMLRKVG+RMKPFLLLGRRG+F GTVENMHLHWKYRELVKIIS  RSIE +   ART
Sbjct: 609  EERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVART 668

Query: 580  LEAESGGILVAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRCASLK 401
            LEAESGGILVAVERV+KG+AII+YRGKNY+RPA LRP+TLL+K+EA+KRSLEAQR  SLK
Sbjct: 669  LEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRESLK 728

Query: 400  LHVLSLSRDIDRLQHQMAK--ESSAMNTMQLTERDK 299
            LHVL L+R+ID L+HQ+    +    N+ QL ++ +
Sbjct: 729  LHVLRLTRNIDELKHQLFSRIKDKETNSKQLVDKSR 764


>ref|XP_008230671.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Prunus mume]
          Length = 1109

 Score =  774 bits (1998), Expect = 0.0
 Identities = 415/693 (59%), Positives = 495/693 (71%), Gaps = 14/693 (2%)
 Frame = -2

Query: 2329 ASNSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXGEIFIPTPQELPKHRVGYTIDSSWST 2150
            A  SAIQRI++KLRSLG+ E              GEIF+P PQ LPK+RVG+T+DSSWST
Sbjct: 56   APKSAIQRIAEKLRSLGFTENNEKPQPQPDTKHAGEIFVPLPQRLPKYRVGHTLDSSWST 115

Query: 2149 PENPVPEPGAG--LTRFRELWXXXXXXXXXXXXXXXXE-VPMVAELTIPAAELRRLRSVG 1979
            PENPVPEPG G  + RF EL                 E VP +AEL++   ELRRL +VG
Sbjct: 116  PENPVPEPGTGRAIARFHELRREVKKQKELEKTGKKEERVPTLAELSLGKGELRRLTTVG 175

Query: 1978 IRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGLVV 1799
            I L K+LK+GKAGITEGIVNGIHE WRRSE+VKI CEDLCRMNMKRTH++LERKTGGLVV
Sbjct: 176  IGLRKKLKIGKAGITEGIVNGIHENWRRSEVVKIVCEDLCRMNMKRTHDMLERKTGGLVV 235

Query: 1798 WRSGSIIILYRGANYQYPYF-----SNEGQIDSNLENISEDPRVIDVASTEQEGNTLSAS 1634
            WRSGS I+LYRG NY+YPYF       +  ID++  N+  D R+ D     +  N + ++
Sbjct: 236  WRSGSKIVLYRGVNYKYPYFLHDKVDEDSTIDTS-HNVLPDARIND--GINEISNEVDSA 292

Query: 1633 AVDPSPKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFTDWWGYEP 1454
             +   P + N  +  +LV GVG  +RVR QLPGE QL EEADR+L+GLGPRFTDWWGYEP
Sbjct: 293  II---PSTTNERAQPMLVKGVGLQDRVRFQLPGEAQLTEEADRMLEGLGPRFTDWWGYEP 349

Query: 1453 LPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGRNRNLQGL 1274
            LPVDADLLPAIVPG+RKPFRLLP+G+KPKLTD EMT +RRL RPLPCHFALGRNRNLQGL
Sbjct: 350  LPVDADLLPAIVPGYRKPFRLLPYGLKPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGL 409

Query: 1273 AVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFYRGKDFLP 1094
            A S++KLWEKCEIAKIAVKRGVQNTN+EIM EELK+LTGG LL+RD+EFIV YRGKDFLP
Sbjct: 410  ASSIVKLWEKCEIAKIAVKRGVQNTNTEIMAEELKRLTGGTLLARDREFIVLYRGKDFLP 469

Query: 1093 SAVSTAMEERRNSKVGRQKRICHDSSMDTTAATPLGVVKPALVDELPEATKVTQSISIKS 914
            SAVS+A+EERR   +  +K+I    +  TT        +P    E     K+    S K 
Sbjct: 470  SAVSSAIEERRKYAIHAEKQIAERGTSVTTRQELEPRTEPENKHEWTNDHKMGLP-SAKR 528

Query: 913  KLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDREDITEEERYMLRKV 734
            KLK A + + R                        +  P   E+D+E IT+EERYMLRKV
Sbjct: 529  KLKSAEVVVNRTSIKLSMALEKKAKAEKLLAELENAAIPQQPETDKEGITKEERYMLRKV 588

Query: 733  GMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVESAARTLEAESGGIL 554
            G+RMKPFLL+GRRGVF GT+ENMHLHWKYRELVKII  ++SIE V+  A+TLEAESGGIL
Sbjct: 589  GLRMKPFLLMGRRGVFDGTIENMHLHWKYRELVKIICNEKSIEAVQQVAQTLEAESGGIL 648

Query: 553  VAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRCASLKLHVLSLSRD 374
            VAVERV+KG+AII+YRGKNY RPA LRP+TLL+K+EAMKRS+EAQR  SLKLHVL L+ +
Sbjct: 649  VAVERVSKGYAIIVYRGKNYSRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLRLNEN 708

Query: 373  IDRLQHQMAKESSAMNTMQLTE------RDKSD 293
            ID L+  + K+  A N   + E      RDK +
Sbjct: 709  IDELKLLLVKDKEADNMQSVGESRNELARDKQE 741


>ref|XP_008230670.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Prunus mume]
          Length = 1122

 Score =  774 bits (1998), Expect = 0.0
 Identities = 415/693 (59%), Positives = 495/693 (71%), Gaps = 14/693 (2%)
 Frame = -2

Query: 2329 ASNSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXGEIFIPTPQELPKHRVGYTIDSSWST 2150
            A  SAIQRI++KLRSLG+ E              GEIF+P PQ LPK+RVG+T+DSSWST
Sbjct: 56   APKSAIQRIAEKLRSLGFTENNEKPQPQPDTKHAGEIFVPLPQRLPKYRVGHTLDSSWST 115

Query: 2149 PENPVPEPGAG--LTRFRELWXXXXXXXXXXXXXXXXE-VPMVAELTIPAAELRRLRSVG 1979
            PENPVPEPG G  + RF EL                 E VP +AEL++   ELRRL +VG
Sbjct: 116  PENPVPEPGTGRAIARFHELRREVKKQKELEKTGKKEERVPTLAELSLGKGELRRLTTVG 175

Query: 1978 IRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGLVV 1799
            I L K+LK+GKAGITEGIVNGIHE WRRSE+VKI CEDLCRMNMKRTH++LERKTGGLVV
Sbjct: 176  IGLRKKLKIGKAGITEGIVNGIHENWRRSEVVKIVCEDLCRMNMKRTHDMLERKTGGLVV 235

Query: 1798 WRSGSIIILYRGANYQYPYF-----SNEGQIDSNLENISEDPRVIDVASTEQEGNTLSAS 1634
            WRSGS I+LYRG NY+YPYF       +  ID++  N+  D R+ D     +  N + ++
Sbjct: 236  WRSGSKIVLYRGVNYKYPYFLHDKVDEDSTIDTS-HNVLPDARIND--GINEISNEVDSA 292

Query: 1633 AVDPSPKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFTDWWGYEP 1454
             +   P + N  +  +LV GVG  +RVR QLPGE QL EEADR+L+GLGPRFTDWWGYEP
Sbjct: 293  II---PSTTNERAQPMLVKGVGLQDRVRFQLPGEAQLTEEADRMLEGLGPRFTDWWGYEP 349

Query: 1453 LPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGRNRNLQGL 1274
            LPVDADLLPAIVPG+RKPFRLLP+G+KPKLTD EMT +RRL RPLPCHFALGRNRNLQGL
Sbjct: 350  LPVDADLLPAIVPGYRKPFRLLPYGLKPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGL 409

Query: 1273 AVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFYRGKDFLP 1094
            A S++KLWEKCEIAKIAVKRGVQNTN+EIM EELK+LTGG LL+RD+EFIV YRGKDFLP
Sbjct: 410  ASSIVKLWEKCEIAKIAVKRGVQNTNTEIMAEELKRLTGGTLLARDREFIVLYRGKDFLP 469

Query: 1093 SAVSTAMEERRNSKVGRQKRICHDSSMDTTAATPLGVVKPALVDELPEATKVTQSISIKS 914
            SAVS+A+EERR   +  +K+I    +  TT        +P    E     K+    S K 
Sbjct: 470  SAVSSAIEERRKYAIHAEKQIAERGTSVTTRQELEPRTEPENKHEWTNDHKMGLP-SAKR 528

Query: 913  KLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDREDITEEERYMLRKV 734
            KLK A + + R                        +  P   E+D+E IT+EERYMLRKV
Sbjct: 529  KLKSAEVVVNRTSIKLSMALEKKAKAEKLLAELENAAIPQQPETDKEGITKEERYMLRKV 588

Query: 733  GMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVESAARTLEAESGGIL 554
            G+RMKPFLL+GRRGVF GT+ENMHLHWKYRELVKII  ++SIE V+  A+TLEAESGGIL
Sbjct: 589  GLRMKPFLLMGRRGVFDGTIENMHLHWKYRELVKIICNEKSIEAVQQVAQTLEAESGGIL 648

Query: 553  VAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRCASLKLHVLSLSRD 374
            VAVERV+KG+AII+YRGKNY RPA LRP+TLL+K+EAMKRS+EAQR  SLKLHVL L+ +
Sbjct: 649  VAVERVSKGYAIIVYRGKNYSRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLRLNEN 708

Query: 373  IDRLQHQMAKESSAMNTMQLTE------RDKSD 293
            ID L+  + K+  A N   + E      RDK +
Sbjct: 709  IDELKLLLVKDKEADNMQSVGESRNELARDKQE 741


>ref|XP_012483760.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Gossypium raimondii]
            gi|763766500|gb|KJB33715.1| hypothetical protein
            B456_006G027700 [Gossypium raimondii]
          Length = 1012

 Score =  769 bits (1985), Expect = 0.0
 Identities = 415/705 (58%), Positives = 497/705 (70%), Gaps = 16/705 (2%)
 Frame = -2

Query: 2344 TRPESAS--NSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG-EIFIPTPQELPKHRVGY 2174
            TRPE+ +   SAIQRI+DKLRSLG+ E                EIF+P P++LPK+RVG+
Sbjct: 47   TRPENQALPQSAIQRIADKLRSLGFSETPNPQPESESGSGCPGEIFVPLPEKLPKYRVGH 106

Query: 2173 TIDSSWSTPENPVPEPGAG----LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAA 2006
            TIDSSWSTPENPVP+PG+     + RFR++                  VP +AEL + AA
Sbjct: 107  TIDSSWSTPENPVPDPGSDPGSLMVRFRDM--KRERKKMGRVKEEERVVPSLAELKLSAA 164

Query: 2005 ELRRLRSVGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 1826
            EL+RLR+VGI  +++LKVGKAGITEGIVNGIHERWR+SE+V+I CED+C+MNMKRTHE+L
Sbjct: 165  ELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVRIVCEDICKMNMKRTHEVL 224

Query: 1825 ERKTGGLVVWRSGSIIILYRGANYQYPYFSNE--GQIDSNLENISEDPRVIDVASTEQEG 1652
            ERKTGGLV+WRSGS IILYRGANY+YPYFS +  G  DS+  N S D  V +    E E 
Sbjct: 225  ERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSS-SNASSDTNVDNKELDETES 283

Query: 1651 NTLSASAVDPS-PKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFT 1475
             +   + V  S PK+ + ++   L+ GVGSP+RVR QLPGE +L  EADRLLDGLGPRFT
Sbjct: 284  CSSEFNGVKTSTPKATDKMTKRALIQGVGSPSRVRFQLPGEAELVAEADRLLDGLGPRFT 343

Query: 1474 DWWGYEPLPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGR 1295
            DWWGYEPLPVD DLLPAI+PG+R+PFRLLP+GVK  LT+ EMT LRRL RPLPCHFALGR
Sbjct: 344  DWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMTTLRRLGRPLPCHFALGR 403

Query: 1294 NRNLQGLAVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFY 1115
            NR LQGLA S+IKLWEKCEIAKIAVKRGVQNTNSE+M EELK LTGG LLSRDK+FIV Y
Sbjct: 404  NRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKWLTGGTLLSRDKDFIVLY 463

Query: 1114 RGKDFLPSAVSTAMEERR------NSKVGRQKRICHDSSMDTTAATPLGVVKPALVDELP 953
            RGKDFLPSAVS+A+EERR       ++ G+  +  H       +   +   K        
Sbjct: 464  RGKDFLPSAVSSAIEERRKHVIHAENQSGKTMQEVHGEGAKIASENDINSAK-------- 515

Query: 952  EATKVTQSISIKSKLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDRE 773
               + +   SI+  L  A   I+R                       + V P   E D+E
Sbjct: 516  --DRKSDVFSIRKNLNSAEATIKRTSSKLSMALEKKAKAEKLLAELEQEVIPQQSEIDKE 573

Query: 772  DITEEERYMLRKVGMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVES 593
             IT EERYMLRKVG+RMKPFLLLGRRGVF GTVENMHLHWKYRELVKIISK+ ++E V  
Sbjct: 574  GITREERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKETNVEAVHQ 633

Query: 592  AARTLEAESGGILVAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRC 413
             A+ LEAESGGILVAVERV+KG+AII YRGKNY RP  LRP+TLL+K+EAMKRSLE QR 
Sbjct: 634  EAQILEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKRSLEEQRR 693

Query: 412  ASLKLHVLSLSRDIDRLQHQMAKESSAMNTMQLTERDKSDVEDEM 278
             SLKLH+L L+R+ID L+HQ+  +  A NT+   +     VE+EM
Sbjct: 694  KSLKLHILKLTRNIDELKHQLVVDKEASNTLAADQSRLPSVEEEM 738


>ref|XP_012483758.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Gossypium raimondii]
            gi|763766497|gb|KJB33712.1| hypothetical protein
            B456_006G027700 [Gossypium raimondii]
          Length = 1023

 Score =  769 bits (1985), Expect = 0.0
 Identities = 415/705 (58%), Positives = 497/705 (70%), Gaps = 16/705 (2%)
 Frame = -2

Query: 2344 TRPESAS--NSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG-EIFIPTPQELPKHRVGY 2174
            TRPE+ +   SAIQRI+DKLRSLG+ E                EIF+P P++LPK+RVG+
Sbjct: 47   TRPENQALPQSAIQRIADKLRSLGFSETPNPQPESESGSGCPGEIFVPLPEKLPKYRVGH 106

Query: 2173 TIDSSWSTPENPVPEPGAG----LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAA 2006
            TIDSSWSTPENPVP+PG+     + RFR++                  VP +AEL + AA
Sbjct: 107  TIDSSWSTPENPVPDPGSDPGSLMVRFRDM--KRERKKMGRVKEEERVVPSLAELKLSAA 164

Query: 2005 ELRRLRSVGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 1826
            EL+RLR+VGI  +++LKVGKAGITEGIVNGIHERWR+SE+V+I CED+C+MNMKRTHE+L
Sbjct: 165  ELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVRIVCEDICKMNMKRTHEVL 224

Query: 1825 ERKTGGLVVWRSGSIIILYRGANYQYPYFSNE--GQIDSNLENISEDPRVIDVASTEQEG 1652
            ERKTGGLV+WRSGS IILYRGANY+YPYFS +  G  DS+  N S D  V +    E E 
Sbjct: 225  ERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSS-SNASSDTNVDNKELDETES 283

Query: 1651 NTLSASAVDPS-PKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFT 1475
             +   + V  S PK+ + ++   L+ GVGSP+RVR QLPGE +L  EADRLLDGLGPRFT
Sbjct: 284  CSSEFNGVKTSTPKATDKMTKRALIQGVGSPSRVRFQLPGEAELVAEADRLLDGLGPRFT 343

Query: 1474 DWWGYEPLPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGR 1295
            DWWGYEPLPVD DLLPAI+PG+R+PFRLLP+GVK  LT+ EMT LRRL RPLPCHFALGR
Sbjct: 344  DWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMTTLRRLGRPLPCHFALGR 403

Query: 1294 NRNLQGLAVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFY 1115
            NR LQGLA S+IKLWEKCEIAKIAVKRGVQNTNSE+M EELK LTGG LLSRDK+FIV Y
Sbjct: 404  NRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKWLTGGTLLSRDKDFIVLY 463

Query: 1114 RGKDFLPSAVSTAMEERR------NSKVGRQKRICHDSSMDTTAATPLGVVKPALVDELP 953
            RGKDFLPSAVS+A+EERR       ++ G+  +  H       +   +   K        
Sbjct: 464  RGKDFLPSAVSSAIEERRKHVIHAENQSGKTMQEVHGEGAKIASENDINSAK-------- 515

Query: 952  EATKVTQSISIKSKLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDRE 773
               + +   SI+  L  A   I+R                       + V P   E D+E
Sbjct: 516  --DRKSDVFSIRKNLNSAEATIKRTSSKLSMALEKKAKAEKLLAELEQEVIPQQSEIDKE 573

Query: 772  DITEEERYMLRKVGMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVES 593
             IT EERYMLRKVG+RMKPFLLLGRRGVF GTVENMHLHWKYRELVKIISK+ ++E V  
Sbjct: 574  GITREERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKETNVEAVHQ 633

Query: 592  AARTLEAESGGILVAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRC 413
             A+ LEAESGGILVAVERV+KG+AII YRGKNY RP  LRP+TLL+K+EAMKRSLE QR 
Sbjct: 634  EAQILEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKRSLEEQRR 693

Query: 412  ASLKLHVLSLSRDIDRLQHQMAKESSAMNTMQLTERDKSDVEDEM 278
             SLKLH+L L+R+ID L+HQ+  +  A NT+   +     VE+EM
Sbjct: 694  KSLKLHILKLTRNIDELKHQLVVDKEASNTLAADQSRLPSVEEEM 738


>ref|XP_007217083.1| hypothetical protein PRUPE_ppa000515mg [Prunus persica]
            gi|462413233|gb|EMJ18282.1| hypothetical protein
            PRUPE_ppa000515mg [Prunus persica]
          Length = 1117

 Score =  766 bits (1978), Expect = 0.0
 Identities = 412/693 (59%), Positives = 491/693 (70%), Gaps = 14/693 (2%)
 Frame = -2

Query: 2329 ASNSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXGEIFIPTPQELPKHRVGYTIDSSWST 2150
            A  SAIQRI++KLRSLG+ E              GEIF+P PQ LPK+RVG+T+DSSWST
Sbjct: 56   APKSAIQRIAEKLRSLGFTENNEKPQPQPDTKYAGEIFVPLPQRLPKYRVGHTLDSSWST 115

Query: 2149 PENPVPEPGAG--LTRFRELWXXXXXXXXXXXXXXXXE-VPMVAELTIPAAELRRLRSVG 1979
            PENPVPEPG G  + RF EL                 E VP +AEL++   ELRRL +VG
Sbjct: 116  PENPVPEPGTGRAIARFHELRREVKKQKELEKTGKKEERVPTLAELSLGKGELRRLTTVG 175

Query: 1978 IRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGLVV 1799
            I L K+LK+GKAGITEGIVNGIHE WRRSE+VKI CEDLCRMNMKRTH++LERKTGGLVV
Sbjct: 176  IGLRKKLKIGKAGITEGIVNGIHENWRRSEVVKIVCEDLCRMNMKRTHDMLERKTGGLVV 235

Query: 1798 WRSGSIIILYRGANYQYPYF-----SNEGQIDSNLENISEDPRVIDVASTEQEGNTLSAS 1634
            WRSGS I+LYRG NY+YPYF       +  ID++  N   D  + D     +  N ++++
Sbjct: 236  WRSGSKIVLYRGVNYKYPYFLRDKVDEDSTIDTS-HNALPDAHIND--GINEISNEVNSA 292

Query: 1633 AVDPSPKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFTDWWGYEP 1454
             +   P + N  +  +LV GVG  +RVR QLPGE QL EEAD +L+GLGPRFTDWWGYEP
Sbjct: 293  II---PSTTNERAQPMLVKGVGLQDRVRFQLPGEAQLTEEADHMLEGLGPRFTDWWGYEP 349

Query: 1453 LPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGRNRNLQGL 1274
            LPVDADLLPAIVPG+RKPFRLLP+G+KPKLTD EMT +RRL RPLPCHFALGRNRNLQGL
Sbjct: 350  LPVDADLLPAIVPGYRKPFRLLPYGLKPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGL 409

Query: 1273 AVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFYRGKDFLP 1094
            A S++KLWEKCEIAKIAVKRGVQNTN+EIM EELK+LTGG LL+RD+EFIV YRGKDFLP
Sbjct: 410  ASSIVKLWEKCEIAKIAVKRGVQNTNTEIMAEELKRLTGGTLLARDREFIVLYRGKDFLP 469

Query: 1093 SAVSTAMEERRNSKVGRQKRICHDSSMDTTAATPLGVVKPALVDELPEATKVTQSISIKS 914
             AVS+A+EERR   +  +K+I    +  TT        +P    E     K+    S K 
Sbjct: 470  PAVSSAIEERRKYAIHAEKQIAEHGTSVTTRQELEPRTEPENKHEWTNDHKMGLP-SAKR 528

Query: 913  KLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDREDITEEERYMLRKV 734
            KLK A + + R                        +  P   E D+E IT+EERYMLRKV
Sbjct: 529  KLKSAEVVVNRTSIKLSMALEKKAKAEKLLAELENAAIPQQPEIDKEGITKEERYMLRKV 588

Query: 733  GMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVESAARTLEAESGGIL 554
            G+RMKPFLL+GRRGVF GT+ENMHLHWKYRELVKII  ++SIE V+  A+TLEAESGGIL
Sbjct: 589  GLRMKPFLLMGRRGVFDGTIENMHLHWKYRELVKIICNEKSIEAVQQVAQTLEAESGGIL 648

Query: 553  VAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRCASLKLHVLSLSRD 374
            VAVERV+KG+AII+YRGKNY RPA LRP+TLL+K+EAMKRS+EAQR  SLKLHVL L+ +
Sbjct: 649  VAVERVSKGYAIIVYRGKNYSRPASLRPQTLLNKREAMKRSIEAQRRESLKLHVLRLNEN 708

Query: 373  IDRLQHQMAKESSAMNTMQLTE------RDKSD 293
            ID L+  + K+  A N   + E      RDK +
Sbjct: 709  IDELKLLLVKDKEADNLQSVGESRNELARDKQE 741


>gb|KJB33714.1| hypothetical protein B456_006G027700 [Gossypium raimondii]
          Length = 998

 Score =  765 bits (1976), Expect = 0.0
 Identities = 415/705 (58%), Positives = 498/705 (70%), Gaps = 19/705 (2%)
 Frame = -2

Query: 2344 TRPESAS--NSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG-EIFIPTPQELPKHRVGY 2174
            TRPE+ +   SAIQRI+DKLRSLG+ E                EIF+P P++LPK+RVG+
Sbjct: 47   TRPENQALPQSAIQRIADKLRSLGFSETPNPQPESESGSGCPGEIFVPLPEKLPKYRVGH 106

Query: 2173 TIDSSWSTPENPVPEPGAG----LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAA 2006
            TIDSSWSTPENPVP+PG+     + RFR++                  VP +AEL + AA
Sbjct: 107  TIDSSWSTPENPVPDPGSDPGSLMVRFRDM--KRERKKMGRVKEEERVVPSLAELKLSAA 164

Query: 2005 ELRRLRSVGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 1826
            EL+RLR+VGI  +++LKVGKAGITEGIVNGIHERWR+SE+V+I CED+C+MNMKRTHE+L
Sbjct: 165  ELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVRIVCEDICKMNMKRTHEVL 224

Query: 1825 ERKTGGLVVWRSGSIIILYRGANYQYPYFSNE--GQIDSNLENISEDPRVIDVASTEQEG 1652
            ERKTGGLV+WRSGS IILYRGANY+YPYFS +  G  DS+  N S D  V +    E E 
Sbjct: 225  ERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSS-SNASSDTNVDNKELDETES 283

Query: 1651 NTLSASAVDPS-PKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFT 1475
             +   + V  S PK+ + ++   L+ GVGSP+RVR QLPGE +L  EADRLLDGLGPRFT
Sbjct: 284  CSSEFNGVKTSTPKATDKMTKRALIQGVGSPSRVRFQLPGEAELVAEADRLLDGLGPRFT 343

Query: 1474 DWWGYEPLPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGR 1295
            DWWGYEPLPVD DLLPAI+PG+R+PFRLLP+GVK  LT+ EMT LRRL RPLPCHFALGR
Sbjct: 344  DWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMTTLRRLGRPLPCHFALGR 403

Query: 1294 NRNLQGLAVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFY 1115
            NR LQGLA S+IKLWEKCEIAKIAVKRGVQNTNSE+M EELK LTGG LLSRDK+FIV Y
Sbjct: 404  NRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKWLTGGTLLSRDKDFIVLY 463

Query: 1114 RGKDFLPSAVSTAMEERR------NSKVGRQKRICHDSSMDTTAATPLGVVKPALVDELP 953
            RGKDFLPSAVS+A+EERR       ++ G+  +  H       +   +   K        
Sbjct: 464  RGKDFLPSAVSSAIEERRKHVIHAENQSGKTMQEVHGEGAKIASENDINSAK-------- 515

Query: 952  EATKVTQSISIKSKLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDRE 773
               + +   SI+  L  A   I+R                       + V P   E D+E
Sbjct: 516  --DRKSDVFSIRKNLNSAEATIKRTSSKLSMALEKKAKAEKLLAELEQEVIPQQSEIDKE 573

Query: 772  DITEEERYMLRKVGMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVES 593
             IT EERYMLRKVG+RMKPFLLLGRRGVF GTVENMHLHWKYRELVKIISK+ ++E V  
Sbjct: 574  GITREERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKETNVEAVHQ 633

Query: 592  AARTLEAESGGILVAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRC 413
             A+ LEAESGGILVAVERV+KG+AII YRGKNY RP  LRP+TLL+K+EAMKRSLE QR 
Sbjct: 634  EAQILEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKRSLEEQRR 693

Query: 412  ASLKLHVLSLSRDIDRLQHQMAKESSA---MNTMQLTERDKSDVE 287
             SLKLH+L L+R+ID L+HQ+  +  A   M T+Q  +  +SD+E
Sbjct: 694  KSLKLHILKLTRNIDELKHQLVVDKEAKEEMETLQSVKCARSDIE 738


>gb|KJB33713.1| hypothetical protein B456_006G027700 [Gossypium raimondii]
          Length = 890

 Score =  765 bits (1976), Expect = 0.0
 Identities = 415/705 (58%), Positives = 498/705 (70%), Gaps = 19/705 (2%)
 Frame = -2

Query: 2344 TRPESAS--NSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG-EIFIPTPQELPKHRVGY 2174
            TRPE+ +   SAIQRI+DKLRSLG+ E                EIF+P P++LPK+RVG+
Sbjct: 47   TRPENQALPQSAIQRIADKLRSLGFSETPNPQPESESGSGCPGEIFVPLPEKLPKYRVGH 106

Query: 2173 TIDSSWSTPENPVPEPGAG----LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAA 2006
            TIDSSWSTPENPVP+PG+     + RFR++                  VP +AEL + AA
Sbjct: 107  TIDSSWSTPENPVPDPGSDPGSLMVRFRDM--KRERKKMGRVKEEERVVPSLAELKLSAA 164

Query: 2005 ELRRLRSVGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 1826
            EL+RLR+VGI  +++LKVGKAGITEGIVNGIHERWR+SE+V+I CED+C+MNMKRTHE+L
Sbjct: 165  ELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVRIVCEDICKMNMKRTHEVL 224

Query: 1825 ERKTGGLVVWRSGSIIILYRGANYQYPYFSNE--GQIDSNLENISEDPRVIDVASTEQEG 1652
            ERKTGGLV+WRSGS IILYRGANY+YPYFS +  G  DS+  N S D  V +    E E 
Sbjct: 225  ERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSS-SNASSDTNVDNKELDETES 283

Query: 1651 NTLSASAVDPS-PKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFT 1475
             +   + V  S PK+ + ++   L+ GVGSP+RVR QLPGE +L  EADRLLDGLGPRFT
Sbjct: 284  CSSEFNGVKTSTPKATDKMTKRALIQGVGSPSRVRFQLPGEAELVAEADRLLDGLGPRFT 343

Query: 1474 DWWGYEPLPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGR 1295
            DWWGYEPLPVD DLLPAI+PG+R+PFRLLP+GVK  LT+ EMT LRRL RPLPCHFALGR
Sbjct: 344  DWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMTTLRRLGRPLPCHFALGR 403

Query: 1294 NRNLQGLAVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFY 1115
            NR LQGLA S+IKLWEKCEIAKIAVKRGVQNTNSE+M EELK LTGG LLSRDK+FIV Y
Sbjct: 404  NRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKWLTGGTLLSRDKDFIVLY 463

Query: 1114 RGKDFLPSAVSTAMEERR------NSKVGRQKRICHDSSMDTTAATPLGVVKPALVDELP 953
            RGKDFLPSAVS+A+EERR       ++ G+  +  H       +   +   K        
Sbjct: 464  RGKDFLPSAVSSAIEERRKHVIHAENQSGKTMQEVHGEGAKIASENDINSAK-------- 515

Query: 952  EATKVTQSISIKSKLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDRE 773
               + +   SI+  L  A   I+R                       + V P   E D+E
Sbjct: 516  --DRKSDVFSIRKNLNSAEATIKRTSSKLSMALEKKAKAEKLLAELEQEVIPQQSEIDKE 573

Query: 772  DITEEERYMLRKVGMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVES 593
             IT EERYMLRKVG+RMKPFLLLGRRGVF GTVENMHLHWKYRELVKIISK+ ++E V  
Sbjct: 574  GITREERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKETNVEAVHQ 633

Query: 592  AARTLEAESGGILVAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRC 413
             A+ LEAESGGILVAVERV+KG+AII YRGKNY RP  LRP+TLL+K+EAMKRSLE QR 
Sbjct: 634  EAQILEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKRSLEEQRR 693

Query: 412  ASLKLHVLSLSRDIDRLQHQMAKESSA---MNTMQLTERDKSDVE 287
             SLKLH+L L+R+ID L+HQ+  +  A   M T+Q  +  +SD+E
Sbjct: 694  KSLKLHILKLTRNIDELKHQLVVDKEAKEEMETLQSVKCARSDIE 738


>emb|CDP02160.1| unnamed protein product [Coffea canephora]
          Length = 1034

 Score =  764 bits (1974), Expect = 0.0
 Identities = 420/704 (59%), Positives = 506/704 (71%), Gaps = 19/704 (2%)
 Frame = -2

Query: 2335 ESASNSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG-----EIFIPTPQELPKHRVGYT 2171
            E+   SAIQRI++KLR LGY+E                    EIF+P P +LPK+RVG+T
Sbjct: 90   ETLPQSAIQRIAEKLRGLGYVEDDKDENKDEDKLPKNGPSPGEIFVPLPSQLPKYRVGHT 149

Query: 2170 IDSSWSTPENPVPEPGAG--LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAAELR 1997
            +D SWSTP+NPVP PG+G  + ++ +L                  VP +AEL +P  ELR
Sbjct: 150  LDPSWSTPQNPVPLPGSGNAIQKYHQL-RRGVIKERIEERKKRETVPTLAELNLPEEELR 208

Query: 1996 RLRSVGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERK 1817
            RLR++GIRL+K+LKVGKAGITEGIVNGIHERWRR E+VKI+CED+CRMNMKRTHE+LE K
Sbjct: 209  RLRTLGIRLQKKLKVGKAGITEGIVNGIHERWRRYEVVKIRCEDICRMNMKRTHELLEMK 268

Query: 1816 TGGLVVWRSGSIIILYRGANYQYPYF-SNEGQIDSNL-ENISEDPRVIDVASTEQEGNTL 1643
            TGGLVVWRSG+ I+LYRGA+Y+YPYF S++   + +L E  S D R+      E++ ++ 
Sbjct: 269  TGGLVVWRSGTNIVLYRGADYKYPYFFSDDNTANGSLREEASVDFRMDYREDNEKKASSS 328

Query: 1642 SASAVDPS-PKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFTDWW 1466
              +A+  S PKS + +SH  L+ GVG+PNRVR QLPGE QL EEADRLL+GLGPRFTDWW
Sbjct: 329  GGNALRSSVPKSLSKVSHPPLIQGVGTPNRVRFQLPGEAQLAEEADRLLEGLGPRFTDWW 388

Query: 1465 GYEPLPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGRNRN 1286
            GYEPLPVDAD LPA VPG+R+PFRLLP+GVKP LT+ EMTILRRL RPLPCHFALGRNR 
Sbjct: 389  GYEPLPVDADFLPAAVPGYRRPFRLLPYGVKPILTNDEMTILRRLGRPLPCHFALGRNRK 448

Query: 1285 LQGLAVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFYRGK 1106
            LQGLA ++IKLWEKCEIAKIAVKRGVQNTNSE+M EELK LTGG LLSRDKEFIV YRGK
Sbjct: 449  LQGLAAAIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKNLTGGTLLSRDKEFIVLYRGK 508

Query: 1105 DFLPSAVSTAMEERRNSKVGRQKRICHDSSMDTTAATP--LGVVKPALVDELPEATKVTQ 932
            DFLP+AVS A+E+RRN  +  +++   D S  T ++    LG  +    DE     K  Q
Sbjct: 509  DFLPAAVSLAIEKRRNYVLDGEEKGA-DKSFTTVSSKDQRLGTSENCNGDE--NNGKEDQ 565

Query: 931  SISIKSKLKPAS---LAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVV----ESDRE 773
             + + SK +  S    AIER                         +E        E D+E
Sbjct: 566  KLELASKRRHRSSTEAAIERTSAKLSKASLQALVKKDMAEKLLVELEKEETTQEPEVDKE 625

Query: 772  DITEEERYMLRKVGMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVES 593
             ITEEERYMLRK+G+RMKPFLLLG+RGVF GT+ENMHLHWKYRELVKII+  RSIE V +
Sbjct: 626  GITEEERYMLRKIGLRMKPFLLLGKRGVFDGTIENMHLHWKYRELVKIITGGRSIEEVTA 685

Query: 592  AARTLEAESGGILVAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRC 413
             ARTLEAESGGILVAVERV+KG AII+YRGKNY RPA LRP++LLSK+EAMKRSLEAQR 
Sbjct: 686  RARTLEAESGGILVAVERVSKGFAIIVYRGKNYSRPACLRPRSLLSKREAMKRSLEAQRR 745

Query: 412  ASLKLHVLSLSRDIDRLQHQMAKESSAMNTMQLTERDKSDVEDE 281
             SLKLHVL L+++IDRL+ Q+AKE    N   L E  K  +++E
Sbjct: 746  ESLKLHVLKLTQNIDRLKLQLAKEKGT-NKTDLAEELKLKLDEE 788


>gb|KHG23499.1| Chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Gossypium arboreum]
          Length = 1027

 Score =  764 bits (1973), Expect = 0.0
 Identities = 415/702 (59%), Positives = 497/702 (70%), Gaps = 13/702 (1%)
 Frame = -2

Query: 2344 TRPESAS--NSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG-EIFIPTPQELPKHRVGY 2174
            TRPE+ +   SAIQRI+DKLRSLG+ E                EIF+P P++LPK+RVG+
Sbjct: 51   TRPENQALPQSAIQRIADKLRSLGFSETPKPQPESESGSGCPGEIFVPLPEKLPKYRVGH 110

Query: 2173 TIDSSWSTPENPVPEPGAG----LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAA 2006
            TID+SWSTPENPVP+PG+     + RFR++                  VP +AEL + AA
Sbjct: 111  TIDTSWSTPENPVPDPGSDPGSLMVRFRDM--KRERKKMGRVKEEERVVPSLAELKLSAA 168

Query: 2005 ELRRLRSVGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 1826
            EL+RLR+VGI  +++LKVGKAGITEGIVNGIHERWR+SE+V+I CED+C+MNMKRTHE+L
Sbjct: 169  ELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVRIVCEDICKMNMKRTHEVL 228

Query: 1825 ERKTGGLVVWRSGSIIILYRGANYQYPYFSNE--GQIDSNLENISEDPRVIDVASTEQEG 1652
            ERKTGGLV+WRSGS IILYRGANY+YPYFS +  G  DS+  N S D  V +    E E 
Sbjct: 229  ERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSS-SNASPDTNVANKELDETES 287

Query: 1651 NTLSASAVDPS-PKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFT 1475
             +   + V  S PK+ + ++   L+ GVGSP+RVR QLPGE +L  EADRLLDGLGPRFT
Sbjct: 288  CSSEFNGVKTSTPKATDKMTKRALIQGVGSPSRVRFQLPGEAELVAEADRLLDGLGPRFT 347

Query: 1474 DWWGYEPLPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGR 1295
            DWWGYEPLPVD DLLPAI+PG+R+PFRLLP+GVK  LT+ EMT LRRL RPLPCHFALGR
Sbjct: 348  DWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMTTLRRLGRPLPCHFALGR 407

Query: 1294 NRNLQGLAVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFY 1115
            NR LQGLA S+IKLWEKCEIAKIAVKRGVQNTNSE+M EELK LTGG LLSRDK+FIV Y
Sbjct: 408  NRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKWLTGGTLLSRDKDFIVLY 467

Query: 1114 RGKDFLPSAVSTAMEERRNSKVGRQKRICH--DSSMDTTAATPLGVVKPALVDELPEATK 941
            RGKDFLPSAVS+A+EERR       K + H  + S  T         K A  +++  A  
Sbjct: 468  RGKDFLPSAVSSAIEERR-------KHVIHAENQSGKTMQEVNGEGTKTASENDINSAKD 520

Query: 940  VTQSI-SIKSKLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDREDIT 764
                + S++  L      I+R                       + V P   E D+E IT
Sbjct: 521  HKSDVFSVRKNLNSTEATIKRTSSKLSMALEKKAKAEKLLAQLEQEVIPQQSEIDKEGIT 580

Query: 763  EEERYMLRKVGMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVESAAR 584
             EERYMLRKVG+RMKPFLLLGRRGVF GTVENMHLHWKYRELVKIISK+ ++E V   A+
Sbjct: 581  REERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKETNVEAVHQEAQ 640

Query: 583  TLEAESGGILVAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRCASL 404
             LEAESGGILVAVERV+KG+AII YRGKNY RP  LRP+TLL+K+EAMKRSLE QR  SL
Sbjct: 641  ILEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKRSLEEQRHKSL 700

Query: 403  KLHVLSLSRDIDRLQHQMAKESSAMNTMQLTERDKSDVEDEM 278
            KLH+L L+R+ID L+HQ+  +  A N +   +     VE+EM
Sbjct: 701  KLHILKLTRNIDELKHQLVVDKEASNKLAADQSRLPSVEEEM 742


>ref|XP_012483761.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X3 [Gossypium raimondii]
          Length = 1009

 Score =  764 bits (1972), Expect = 0.0
 Identities = 414/705 (58%), Positives = 497/705 (70%), Gaps = 19/705 (2%)
 Frame = -2

Query: 2344 TRPESAS--NSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG-EIFIPTPQELPKHRVGY 2174
            TRPE+ +   SAIQRI+DKLRSLG+ E                EIF+P P++LPK+RVG+
Sbjct: 47   TRPENQALPQSAIQRIADKLRSLGFSETPNPQPESESGSGCPGEIFVPLPEKLPKYRVGH 106

Query: 2173 TIDSSWSTPENPVPEPGAG----LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAA 2006
            TIDSSWSTPENPVP+PG+     + RFR++                  VP +AEL + AA
Sbjct: 107  TIDSSWSTPENPVPDPGSDPGSLMVRFRDM--KRERKKMGRVKEEERVVPSLAELKLSAA 164

Query: 2005 ELRRLRSVGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 1826
            EL+RLR+VGI  +++LKVGKAGITEGIVNGIHERWR+SE+V+I CED+C+MNMKRTHE+L
Sbjct: 165  ELKRLRTVGIGEKRKLKVGKAGITEGIVNGIHERWRKSEVVRIVCEDICKMNMKRTHEVL 224

Query: 1825 ERKTGGLVVWRSGSIIILYRGANYQYPYFSNE--GQIDSNLENISEDPRVIDVASTEQEG 1652
            ERKTGGLV+WRSGS IILYRGANY+YPYFS +  G  DS+  N S D  V +    E E 
Sbjct: 225  ERKTGGLVIWRSGSKIILYRGANYKYPYFSADKIGTHDSS-SNASSDTNVDNKELDETES 283

Query: 1651 NTLSASAVDPS-PKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFT 1475
             +   + V  S PK+ + ++   L+ GVGSP+RVR QLPGE +L  EADRLLDGLGPRFT
Sbjct: 284  CSSEFNGVKTSTPKATDKMTKRALIQGVGSPSRVRFQLPGEAELVAEADRLLDGLGPRFT 343

Query: 1474 DWWGYEPLPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGR 1295
            DWWGYEPLPVD DLLPAI+PG+R+PFRLLP+GVK  LT+ EMT LRRL RPLPCHFALGR
Sbjct: 344  DWWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKSLLTNDEMTTLRRLGRPLPCHFALGR 403

Query: 1294 NRNLQGLAVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFY 1115
            NR LQGLA S+IKLWEKCEIAKIAVKRGVQNTNSE+M EELK LTGG LLSRDK+FIV Y
Sbjct: 404  NRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSELMAEELKWLTGGTLLSRDKDFIVLY 463

Query: 1114 RGKDFLPSAVSTAMEERR------NSKVGRQKRICHDSSMDTTAATPLGVVKPALVDELP 953
            RGKDFLPSAVS+A+EERR       ++ G+  +  H       +   +   K        
Sbjct: 464  RGKDFLPSAVSSAIEERRKHVIHAENQSGKTMQEVHGEGAKIASENDINSAK-------- 515

Query: 952  EATKVTQSISIKSKLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDRE 773
               + +   SI+  L  A   I+R                       + V P   E D+E
Sbjct: 516  --DRKSDVFSIRKNLNSAEATIKRTSSKLSMALEKKAKAEKLLAELEQEVIPQQSEIDKE 573

Query: 772  DITEEERYMLRKVGMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVES 593
             IT EERYMLRKVG+RMKPFLLLGRRGVF GTVENMHLHWKYRELVKIISK+ ++E V  
Sbjct: 574  GITREERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKETNVEAVHQ 633

Query: 592  AARTLEAESGGILVAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRC 413
             A+ LEAESGGILVAVERV+KG+AII YRGKNY RP  LRP+TLL+K+EAMKRSLE QR 
Sbjct: 634  EAQILEAESGGILVAVERVSKGYAIIFYRGKNYERPTCLRPQTLLTKREAMKRSLEEQRR 693

Query: 412  ASLKLHVLSLSRDIDRLQHQMAKESSA---MNTMQLTERDKSDVE 287
             SLKLH+L L+R+ID L+HQ+  +      M T+Q  +  +SD+E
Sbjct: 694  KSLKLHILKLTRNIDELKHQLVVDKEVEEEMETLQSVKCARSDIE 738


>ref|XP_007031356.1| CRM family member 2, putative isoform 2 [Theobroma cacao]
            gi|508710385|gb|EOY02282.1| CRM family member 2, putative
            isoform 2 [Theobroma cacao]
          Length = 1045

 Score =  757 bits (1954), Expect = 0.0
 Identities = 405/699 (57%), Positives = 495/699 (70%), Gaps = 11/699 (1%)
 Frame = -2

Query: 2344 TRPESASNSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXG---EIFIPTPQELPKHRVGY 2174
            T  ++   SAIQRI+DKLRSLG+ E                  EIF+P P+++PK+RVG+
Sbjct: 52   TGNQTLPQSAIQRIADKLRSLGFSETQNPEPESEPGSGSDSPGEIFVPLPEKIPKYRVGH 111

Query: 2173 TIDSSWSTPENPVPEPGAG----LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAA 2006
            TID+SWSTPENPVP+PG+G    + RFRE+                  VP +AEL + AA
Sbjct: 112  TIDTSWSTPENPVPDPGSGPGSLMARFREM--KRERRKVGRVKEEDRAVPSLAELKLSAA 169

Query: 2005 ELRRLRSVGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEIL 1826
            ELRRLR+VGI  +++LK+GKAGITEGIVNGIHERWRRSE+VKI CED+C+MNMKRTHE+L
Sbjct: 170  ELRRLRTVGIGEKRKLKLGKAGITEGIVNGIHERWRRSEVVKIVCEDICKMNMKRTHEVL 229

Query: 1825 ERKTGGLVVWRSGSIIILYRGANYQYPYF-SNEGQIDSNLENISEDPRVIDVASTEQEGN 1649
            ERKTGGLVVWRSGS IILYRGANY+YPYF +++   D    N S D  + +V   E E  
Sbjct: 230  ERKTGGLVVWRSGSKIILYRGANYRYPYFLADKIATDDTSSNASPDTNMDNVELHETESC 289

Query: 1648 TLSA-SAVDPSPKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFTD 1472
            +    SA    P + N ++  ++V GVGSP+RVR QLPGE +L EEA+ LLDGLGPRFTD
Sbjct: 290  SSEINSAKTAIPNATNKMTKPMIVQGVGSPSRVRFQLPGEAELVEEANHLLDGLGPRFTD 349

Query: 1471 WWGYEPLPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGRN 1292
            WWGYEPLPVD DLLPAI+PG+R+PFRLLP+GVKP LT+ EMT LRRL RPLPCHF LGRN
Sbjct: 350  WWGYEPLPVDGDLLPAIIPGYRRPFRLLPYGVKPILTNDEMTTLRRLGRPLPCHFVLGRN 409

Query: 1291 RNLQGLAVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFYR 1112
            R LQGLA S++K WEKCEIAK+AVKRGVQNTNSE+M EELK LTGG LLSRDK+FIV YR
Sbjct: 410  RKLQGLAASIVKHWEKCEIAKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDKDFIVLYR 469

Query: 1111 GKDFLPSAVSTAMEERRNSKVGRQKRICHDSSMDTTAATPLGVVKPALVDELPEATKVTQ 932
            GKDFLPSAVS+A+EERR   +  +K+    S    TA   +     +  +    + K  +
Sbjct: 470  GKDFLPSAVSSAIEERRRHVIHVEKQGAECSKSKKTAQEVIVEDTKSGSESKINSAKDQR 529

Query: 931  S--ISIKSKLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDREDITEE 758
            S        +K A  AI +                       ++  P   E D+E IT+E
Sbjct: 530  SNFFGDPKNMKSAEAAIRKTDVKLSMALEKKAKAEKLLAELEQAEIPQQSEIDKEGITQE 589

Query: 757  ERYMLRKVGMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVESAARTL 578
            ERYMLRKVG+RMKPFLLLGRRGVF GTVENMHLHWKYRELVKIISK+ ++E V   AR L
Sbjct: 590  ERYMLRKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIISKETNVEAVHQLARML 649

Query: 577  EAESGGILVAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRCASLKL 398
            EAESGGILVAVERV+KG+AII+YRGKNY RP  LRP+TLL+K++AMKRSLE QR  SLKL
Sbjct: 650  EAESGGILVAVERVSKGYAIIVYRGKNYERPTSLRPQTLLTKRQAMKRSLEEQRRKSLKL 709

Query: 397  HVLSLSRDIDRLQHQMAKESSAMNTMQLTERDKSDVEDE 281
            H+L+L+R+++ L+HQ+  +  A N+MQ  E+    +  E
Sbjct: 710  HILNLTRNVNDLEHQLVVDKEA-NSMQTVEQSSLPLVQE 747


>ref|XP_011047274.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Populus euphratica]
          Length = 1026

 Score =  756 bits (1953), Expect = 0.0
 Identities = 412/700 (58%), Positives = 492/700 (70%), Gaps = 10/700 (1%)
 Frame = -2

Query: 2338 PESASNSAIQRISDKLRSLGYLEXXXXXXXXXXXXXXGEIFIPTPQELPKHRVGYTIDSS 2159
            P++  +SAIQRI+DKLRSLG+ E               EIFIP P  LPK+RVG T+D S
Sbjct: 55   PQTLPHSAIQRIADKLRSLGFTEETETKAPTTAG----EIFIPLPNRLPKYRVGQTLDPS 110

Query: 2158 WSTPENPVPEPGAG--LTRFRELWXXXXXXXXXXXXXXXXEVPMVAELTIPAAELRRLRS 1985
            WSTPENPVP PG+G  ++R+ EL                 +VP +AEL++P  ELRRLR+
Sbjct: 111  WSTPENPVPVPGSGKAISRYHEL--RREVKREREAKKGEGKVPSLAELSLPNEELRRLRT 168

Query: 1984 VGIRLEKRLKVGKAGITEGIVNGIHERWRRSELVKIKCEDLCRMNMKRTHEILERKTGGL 1805
            +GI  +++LKVGKAGITEGIVNGIHERWRRSE+VKI CEDLCRMNMKRTH++LERKTGGL
Sbjct: 169  IGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRTHDLLERKTGGL 228

Query: 1804 VVWRSGSIIILYRGANYQYPYFSNEGQIDSNLENISEDPRVIDVASTE--QEGNTLSA-- 1637
            VVWR GS I+LYRGA+Y+YPYF  E    S  E  S+  + IDV   E  +EG+ LSA  
Sbjct: 229  VVWRVGSKIVLYRGADYKYPYFLAE--TSSVNETSSDAVQNIDVDDKEDDEEGSVLSAVD 286

Query: 1636 SAVDPSPKSPNGLSHSLLVPGVGSPNRVRLQLPGEVQLEEEADRLLDGLGPRFTDWWGYE 1457
             A  P P+S + +    LV GVGSPNRVR QLPGE QL EEAD LLDGLGPRF DWWGY+
Sbjct: 287  GAAPPEPRSSDEIVRPSLVQGVGSPNRVRFQLPGEAQLTEEADHLLDGLGPRFNDWWGYD 346

Query: 1456 PLPVDADLLPAIVPGFRKPFRLLPFGVKPKLTDREMTILRRLSRPLPCHFALGRNRNLQG 1277
            PLPVDADLLPA+V G+R+PFRLLP+GV P LT+ EMT L+RLSRPLPCHFALGRN   QG
Sbjct: 347  PLPVDADLLPAVVSGYRRPFRLLPYGVSPTLTNDEMTTLKRLSRPLPCHFALGRNTKHQG 406

Query: 1276 LAVSMIKLWEKCEIAKIAVKRGVQNTNSEIMGEELKQLTGGVLLSRDKEFIVFYRGKDFL 1097
            LA S++KLWEKCEIAKIAVKRGVQNTNSE+M +ELK LTGG LLSRD+EFIV YRGKDFL
Sbjct: 407  LAASIVKLWEKCEIAKIAVKRGVQNTNSELMAQELKWLTGGTLLSRDREFIVLYRGKDFL 466

Query: 1096 PSAVSTAMEERRNSKVGRQKR----ICHDSSMDTTAATPLGVVKPALVDELPEATKVTQS 929
            PSAVS+A+E+RR  +    KR    I  + + +               DE+         
Sbjct: 467  PSAVSSAIEDRR-KRGDMDKRWTDCITSNETSEELKDRSWRTTNAKSTDEIDGTNDRKHD 525

Query: 928  ISIKSKLKPASLAIERVXXXXXXXXXXXXXXXXXXXXXXKSVEPPVVESDREDITEEERY 749
            +S    L+    AI+R                       KS      E D+E ITEEERY
Sbjct: 526  LSENKNLRSTDAAIKRTSIKLSMALEKKAKAEKLLSELEKSEMSQQPEIDKEGITEEERY 585

Query: 748  MLRKVGMRMKPFLLLGRRGVFSGTVENMHLHWKYRELVKIISKDRSIEHVESAARTLEAE 569
            MLRK+G++MKPFLL+GRRGVF GT+ENMHLHWKYRELVKII K++S + V++ ARTLEAE
Sbjct: 586  MLRKIGLKMKPFLLMGRRGVFDGTIENMHLHWKYRELVKIICKEKSFQAVQAVARTLEAE 645

Query: 568  SGGILVAVERVNKGHAIIIYRGKNYRRPADLRPKTLLSKKEAMKRSLEAQRCASLKLHVL 389
            SGGILVAVE V+KG+AII+YRGKNY RPA LRP TLLSK++AMKRSLEAQR  SLKLHVL
Sbjct: 646  SGGILVAVEGVSKGYAIILYRGKNYTRPACLRPPTLLSKRQAMKRSLEAQRRESLKLHVL 705

Query: 388  SLSRDIDRLQHQMAKESSAMNTMQLTERDKSDVEDEMNEP 269
             L+ +ID L+ Q+ K+  A N +Q  +  K  V+ E  EP
Sbjct: 706  RLTSNIDHLKLQLVKDKEAYN-VQCFDESKFQVKGESEEP 744