BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00005601
         (2649 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008806151.1| PREDICTED: DNA-directed RNA polymerase II su...  1348   0.0  
ref|XP_010935180.1| PREDICTED: DNA-directed RNA polymerase II su...  1348   0.0  
ref|XP_010941355.1| PREDICTED: DNA-directed RNA polymerase II su...  1343   0.0  
gb|AIO05697.1| DNA-directed RNA polymerase II subunit 1, partial...  1340   0.0  
ref|XP_009401403.1| PREDICTED: DNA-directed RNA polymerase II su...  1333   0.0  
ref|XP_010266907.1| PREDICTED: DNA-directed RNA polymerase II su...  1332   0.0  
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  1331   0.0  
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...  1326   0.0  
gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japo...  1318   0.0  
ref|XP_006828844.1| PREDICTED: DNA-directed RNA polymerase II su...  1315   0.0  
ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II su...  1309   0.0  
ref|XP_008448514.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1298   0.0  
gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegi...  1298   0.0  
gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Trit...  1298   0.0  
dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]   1298   0.0  
ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [S...  1297   0.0  
ref|XP_004146161.2| PREDICTED: DNA-directed RNA polymerase II su...  1295   0.0  
ref|NP_001292746.1| DNA-directed RNA polymerase II subunit 1 [Ze...  1295   0.0  
ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II su...  1293   0.0  
ref|XP_010029631.1| PREDICTED: DNA-directed RNA polymerase II su...  1288   0.0  

>ref|XP_008806151.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Phoenix
            dactylifera]
          Length = 1842

 Score = 1348 bits (3490), Expect = 0.0
 Identities = 667/704 (94%), Positives = 691/704 (98%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 833  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 892

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIESQKLDSLKMKK EFD  +KYEIDD++WNPSYMLPEHVEDLKTIREFRNVFDAEV
Sbjct: 893  DAVWIESQKLDSLKMKKSEFDKGFKYEIDDDNWNPSYMLPEHVEDLKTIREFRNVFDAEV 952

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR+QLGTEIATTGDNTWP+PVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DK
Sbjct: 953  QKLEADRYQLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDK 1012

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDDFLSMEAQKNATL FNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR
Sbjct: 1013 LQERLKVVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1072

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGC+AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1073 FLQSLVAPGEMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1132

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LKPEV+KKKELAKNVQCALEYTTLRSVTHATE+WYDP+P STIIEEDV+FV S
Sbjct: 1133 TPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVEFVKS 1192

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDE++APEKISPWLLRIELNREMMVDKKLSMADIAEKINHEF DDLTCIFNDDNA+
Sbjct: 1193 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFADDLTCIFNDDNAD 1252

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILRIRIMND+APKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGK+NR
Sbjct: 1253 KLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNR 1312

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            FD+NEGFK DVEW LDTEGVNLLAV+CHEDVD TRTTSNHLIEVIEVLGIEAVR+SLLDE
Sbjct: 1313 FDDNEGFKADVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDE 1372

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1373 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1432

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVYAE D+LRGVTENIMLGQLAPIGTG CALYLNDQMLQQAIELQLPSYM+GLDFGMTP
Sbjct: 1433 AAVYAETDYLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGLDFGMTP 1492

Query: 668  ARSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            +RSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF
Sbjct: 1493 SRSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 1536


>ref|XP_010935180.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Elaeis
            guineensis]
          Length = 1842

 Score = 1348 bits (3488), Expect = 0.0
 Identities = 665/704 (94%), Positives = 691/704 (98%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 833  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 892

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIESQKLDSLKMKK +FD V+KYEIDD++WNPSYMLPEHVEDLKTIREFRNVFDAEV
Sbjct: 893  DAVWIESQKLDSLKMKKSDFDRVFKYEIDDDNWNPSYMLPEHVEDLKTIREFRNVFDAEV 952

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR+QLGTEIATTGDNTWP+PVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DK
Sbjct: 953  QKLEADRYQLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDK 1012

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDDFLSMEAQKNATL FNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR
Sbjct: 1013 LQERLKVVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1072

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGC+AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1073 FLQSLVAPGEMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1132

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LKPEV+KKKELAKNVQCALEYTTLRSVTHATE+WYDP+P STIIEEDV+FV S
Sbjct: 1133 TPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVEFVKS 1192

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDE++APEKISPWLLRIELNREMMVDKKLSMADIAEKINHEF DDLTCIFNDDNA+
Sbjct: 1193 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFADDLTCIFNDDNAD 1252

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILRIRIMND+APKGELQDESAEDDVFLK+IESNMLTEMALRGIPDINKVFIKSGK+NR
Sbjct: 1253 KLILRIRIMNDEAPKGELQDESAEDDVFLKRIESNMLTEMALRGIPDINKVFIKSGKVNR 1312

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            FDENEGFK DVEW LDTEGVNLLAV+CHEDVD TRTTSNHLIEVIEVLGIEAVR+SLLDE
Sbjct: 1313 FDENEGFKADVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDE 1372

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1373 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1432

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAV+AE DHLRGVTENIMLGQLAPIGTG CALYLNDQMLQQAIELQLPSYM+GL+FGMTP
Sbjct: 1433 AAVFAETDHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGLEFGMTP 1492

Query: 668  ARSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            +RSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGM F
Sbjct: 1493 SRSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMTF 1536


>ref|XP_010941355.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Elaeis
            guineensis]
          Length = 1842

 Score = 1343 bits (3476), Expect = 0.0
 Identities = 663/704 (94%), Positives = 689/704 (97%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 833  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 892

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIESQKLDSLKMKK EFD +++YEIDDN+WNPSYMLPEHVEDLKTIREF+NVFDAEV
Sbjct: 893  DAVWIESQKLDSLKMKKSEFDKIFRYEIDDNNWNPSYMLPEHVEDLKTIREFKNVFDAEV 952

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR+QLGTEI TTGDNTWPMPVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DK
Sbjct: 953  QKLEADRYQLGTEIVTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDK 1012

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDDFLSMEAQKNATL FNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR
Sbjct: 1013 LQERLKVVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1072

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1073 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1132

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LKPEV+KKKELAKNVQ ALEYTTLRSVTHATEVWYDP+P STIIEEDV+FV S
Sbjct: 1133 TPSLSVYLKPEVNKKKELAKNVQTALEYTTLRSVTHATEVWYDPDPMSTIIEEDVEFVKS 1192

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDE++APEKISPWLLR+ELNREMMVDKKLSMADIAEKINHEF  D+TCIFNDDNA+
Sbjct: 1193 YYEMPDEDIAPEKISPWLLRVELNREMMVDKKLSMADIAEKINHEFGSDITCIFNDDNAD 1252

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILRIRIMND+APKG+LQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGK+NR
Sbjct: 1253 KLILRIRIMNDEAPKGDLQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNR 1312

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            FDE EGFK DVEW LDTEGVNLLAV+CHEDVD TRTTSNHLIEVIEVLGIEAVR++LLDE
Sbjct: 1313 FDETEGFKADVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDE 1372

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1373 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1432

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVY+EADHLRGVTENIMLGQLAPIGTG CALYLNDQMLQQAIELQLPSYM+GLDFGMTP
Sbjct: 1433 AAVYSEADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGLDFGMTP 1492

Query: 668  ARSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            +RSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF
Sbjct: 1493 SRSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 1536


>gb|AIO05697.1| DNA-directed RNA polymerase II subunit 1, partial [Cocos nucifera]
          Length = 1705

 Score = 1340 bits (3467), Expect = 0.0
 Identities = 662/704 (94%), Positives = 686/704 (97%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 833  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 892

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIESQKLDSLKMKK EFD  +KYEIDD++WNPSYMLPEHVEDLKTIREFRNVFDAEV
Sbjct: 893  DAVWIESQKLDSLKMKKSEFDKFFKYEIDDDNWNPSYMLPEHVEDLKTIREFRNVFDAEV 952

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR+QLGTEIATTGDNTWP+PVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DK
Sbjct: 953  QKLEADRYQLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDK 1012

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDDFLSMEAQKNATL FNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR
Sbjct: 1013 LQERLKVVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1072

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGC+AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1073 FLQSLVAPGEMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1132

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LK EV+KKKELAKNVQCALEYTTLRSVTHATE+WYDP+P STIIEEDV+FV S
Sbjct: 1133 TPSLSVYLKSEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVEFVKS 1192

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDE++APEKISPWLLRIELNREMMVDKKLSMADIAEKINHEF DDLTCIFNDDNA+
Sbjct: 1193 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFADDLTCIFNDDNAD 1252

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILRIRIMND+ PKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGK+NR
Sbjct: 1253 KLILRIRIMNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNR 1312

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            FDEN+GFK DVEW LDTEGVNLLAV+CHEDVD TRTTSNHLIEVIEVLGIEAVR+SLLDE
Sbjct: 1313 FDENDGFKADVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDE 1372

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD LLD
Sbjct: 1373 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDXLLD 1432

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAV+AE DHLRGVTENIMLGQLAPIGTG CALYLNDQMLQ AIELQLPSYM+GLDFGMTP
Sbjct: 1433 AAVFAETDHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQXAIELQLPSYMEGLDFGMTP 1492

Query: 668  ARSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            +RSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGM F
Sbjct: 1493 SRSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMTF 1536


>ref|XP_009401403.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Musa acuminata
            subsp. malaccensis]
          Length = 1832

 Score = 1333 bits (3449), Expect = 0.0
 Identities = 663/711 (93%), Positives = 689/711 (96%), Gaps = 7/711 (0%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 833  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 892

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIE QK DSLKMKK EFD+V++YEIDD++WNPSY+ PEHVEDLKTIREFRNVFDAEV
Sbjct: 893  DAVWIEYQKFDSLKMKKGEFDSVFRYEIDDDNWNPSYLQPEHVEDLKTIREFRNVFDAEV 952

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR+QLGTEIATTGD + PMPVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DK
Sbjct: 953  QKLEADRYQLGTEIATTGDISIPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDK 1012

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDDFLSMEAQKNATLLFNILLRS+FASKRV+KEYRLTREAFEWVIGEIESR
Sbjct: 1013 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSSFASKRVMKEYRLTREAFEWVIGEIESR 1072

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1073 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1132

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LKP V+KKKELAKNVQCALEYTTLRSVTHATE+WYDP+P STIIEEDV+FV S
Sbjct: 1133 TPSLSVYLKPGVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPMSTIIEEDVEFVKS 1192

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDE++APEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNA+
Sbjct: 1193 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAD 1252

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR
Sbjct: 1253 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1312

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            FDENEGFKPDVEW LDTEGVNLLAV+CHED+D TRTTSNHLIEVIEVLGIEAVR+SLLDE
Sbjct: 1313 FDENEGFKPDVEWMLDTEGVNLLAVMCHEDIDATRTTSNHLIEVIEVLGIEAVRRSLLDE 1372

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1373 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1432

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMD-------G 690
            AAVYAE DHLRGVTENIMLGQLAPIGTG CALYLNDQMLQQAIELQLPSYMD       G
Sbjct: 1433 AAVYAEGDHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMDGGFGGPGG 1492

Query: 689  LDFGMTPARSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
             DFGMTP+RSPISGTPYHEGMMSPSYLLSPN+R+SPITDAQFSPYVGGMAF
Sbjct: 1493 FDFGMTPSRSPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1543


>ref|XP_010266907.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Nelumbo
            nucifera]
          Length = 1848

 Score = 1332 bits (3446), Expect = 0.0
 Identities = 664/704 (94%), Positives = 684/704 (97%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 832  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 891

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIE+QKLDSLKM+K EFD V++YEIDD +WNPSYMLPEHVEDLKTIREFRNVFDAEV
Sbjct: 892  DAVWIETQKLDSLKMRKSEFDKVFRYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEV 951

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR+QLGTEIATTGDN WPMPVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEAVDK
Sbjct: 952  QKLEADRYQLGTEIATTGDNNWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDK 1011

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDDFLSMEAQKNATL FNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1071

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1131

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LKPEV+K KE AKNVQCALEYTTLRSVT ATEVWYDP+P STIIEEDVDFV S
Sbjct: 1132 TPSLSVYLKPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKS 1191

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDLTCIFNDDNAE
Sbjct: 1192 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 1251

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILRIRIMND+APKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGK+N+
Sbjct: 1252 KLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNK 1311

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            FDE+EGFKP+VEW LDTEGVNLLAV+CHEDVD TRTTSNHLIEVIEVLGIEAVR++LLDE
Sbjct: 1312 FDESEGFKPEVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDE 1371

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1431

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVYAE D LRGVTENIMLGQLAPIGTG CALYLNDQMLQQAIELQLPSYM+GLDFGMTP
Sbjct: 1432 AAVYAETDCLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGLDFGMTP 1491

Query: 668  ARSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            +RSPI GTPY+EGMMSPSYLLSPN R SPITDAQFSPYVGGMAF
Sbjct: 1492 SRSPIMGTPYNEGMMSPSYLLSPNARLSPITDAQFSPYVGGMAF 1535


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Vitis vinifera]
          Length = 1848

 Score = 1331 bits (3444), Expect = 0.0
 Identities = 663/704 (94%), Positives = 684/704 (97%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 832  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 891

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIE+QKLDSLKMKK EFD V+KYEIDD +WNPSYMLPEHVEDLKTIREFRNVFDAEV
Sbjct: 892  DAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEV 951

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADRFQLGTEIATTGDN+WPMPVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEAVDK
Sbjct: 952  QKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDK 1011

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDD +SMEAQKNATL FNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1071

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1131

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LKP+VSK KE AKNVQCALEYTTLRSVT ATEVWYDP+P STIIEEDVDFV S
Sbjct: 1132 TPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKS 1191

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDLTCIFNDDNAE
Sbjct: 1192 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 1251

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILRIRIMND+APKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGK+N+
Sbjct: 1252 KLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNK 1311

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            FDE+EGFKP+VEW LDTEGVNLLAV+CHEDVD  RTTSNHLIEVIEVLGIEAVR+SLLDE
Sbjct: 1312 FDESEGFKPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1371

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1431

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVYAE D LRGVTENIMLGQLAPIGTG CALYLNDQMLQ AIELQLPSYM+GLDFGMTP
Sbjct: 1432 AAVYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTP 1491

Query: 668  ARSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            +RSPI+GTPYH+GMMSP+YLLSPN+R SPITDAQFSPYVGGMAF
Sbjct: 1492 SRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535


>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score = 1326 bits (3431), Expect = 0.0
 Identities = 650/704 (92%), Positives = 688/704 (97%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 832  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 891

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIESQKLDSLKMKK EFD V++YE+DD +W P+YMLPEHVEDLKTIREFRNVF+AEV
Sbjct: 892  DAVWIESQKLDSLKMKKGEFDTVFRYELDDENWRPNYMLPEHVEDLKTIREFRNVFEAEV 951

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DK
Sbjct: 952  QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDK 1011

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+EAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESR 1071

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1131

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LKPEV+KKKELAKNVQCALEYTTLRSVTHATE+WYDP+P  TIIEEDV+FV S
Sbjct: 1132 TPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRS 1191

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDE+V P+KISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDL+CIFNDDNA+
Sbjct: 1192 YYEMPDEDVDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNAD 1251

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILR+RI ND+APKGE+QDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK+N+
Sbjct: 1252 KLILRVRITNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNK 1311

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            F++N+GFKPD EW LDTEGVNLLAV+CHEDVD TRTTSNHLIEVIEVLGIEAVR++LLDE
Sbjct: 1312 FEDNDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDE 1371

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLD 1431

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVYAE+D+LRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSY++GLDFGMTP
Sbjct: 1432 AAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTP 1491

Query: 668  ARSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            ARSPISGTPYHEGMMSPSYLLSPN+R+SPITDAQFSPYVGGMAF
Sbjct: 1492 ARSPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1535


>gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
          Length = 1526

 Score = 1318 bits (3411), Expect = 0.0
 Identities = 646/704 (91%), Positives = 686/704 (97%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGRE LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 503  FFHAMGGRESLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 562

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIESQKLDSLKMKK EFDNV++YE+DD +W P+YMLPEHV+DLKTIREFRNVF+AEV
Sbjct: 563  DAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEV 622

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADRFQLG+EIATTGDNTWPMPVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DK
Sbjct: 623  QKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDK 682

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+EAFEWVIGEIESR
Sbjct: 683  LQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESR 742

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 743  FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 802

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LKPEV+KKKELAKNVQCALEYTTLRSVTHATE+WYDP+P  TIIEEDV+FV S
Sbjct: 803  TPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRS 862

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDE++ P+KISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDL+CIFNDDNA+
Sbjct: 863  YYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNAD 922

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILR+RI ND+APKGE+QDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK+N+
Sbjct: 923  KLILRVRITNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNK 982

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            F++N GFK D EW LDTEGVNLLAV+CHEDVD TRTTSNHLIEVIEVLGIEAVR++LLDE
Sbjct: 983  FEDNVGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDE 1042

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLD
Sbjct: 1043 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLD 1102

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVYAE+D+LRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSY++GLDFGMTP
Sbjct: 1103 AAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTP 1162

Query: 668  ARSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            ARSPISGTPYHEGMMSPSYLLSPN+R+SPITDAQFSPYVGGMAF
Sbjct: 1163 ARSPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1206


>ref|XP_006828844.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Amborella
            trichopoda] gi|548833823|gb|ERM96260.1| hypothetical
            protein AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score = 1315 bits (3403), Expect = 0.0
 Identities = 655/704 (93%), Positives = 684/704 (97%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 835  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 894

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIESQKLDSLKMK+ EF+NVYKYEID  +W+PSYMLPEHVEDLKTIREF+NVFDAEV
Sbjct: 895  DAVWIESQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVFDAEV 954

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR QLGTEI TTGDN+WPMPVNLKRLIWNAQK FKVD RRPSDMHPMEIVEAVDK
Sbjct: 955  QKLEADRHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDK 1014

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLTREAF+WVIGEIESR
Sbjct: 1015 LQERLKVVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESR 1074

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1075 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1134

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LK EV+K KE AKNVQCALEYTTLRSVT ATEVWYDP+P STIIEEDVDFV S
Sbjct: 1135 TPSLSVYLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVRS 1194

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDLTCIFNDDNAE
Sbjct: 1195 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 1254

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILRIRIMND+APKGELQDES+EDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKIN+
Sbjct: 1255 KLILRIRIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINK 1314

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            FDENEGFKP++EW LDTEGVNLLAV+C+E+VD TRTTSNHLIEVI+VLGIEAVR++LLDE
Sbjct: 1315 FDENEGFKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRALLDE 1374

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1375 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1434

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVYAEADHLRGVTENIMLGQLAPIGTG CALYLNDQMLQQAIELQLPSYM+G+DFGMTP
Sbjct: 1435 AAVYAEADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGMDFGMTP 1494

Query: 668  ARSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            +RSP++GTPYHEGMMSP YLLSPN+RSSPITDAQFSPYVGGMAF
Sbjct: 1495 SRSPMTGTPYHEGMMSP-YLLSPNMRSSPITDAQFSPYVGGMAF 1537


>ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Setaria italica]
          Length = 1852

 Score = 1309 bits (3387), Expect = 0.0
 Identities = 646/705 (91%), Positives = 682/705 (96%), Gaps = 1/705 (0%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 832  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 891

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIESQKLDSLKMKK EFDNV++YE+DD +W P+YMLPEHV+DLKTIREFRNVF+AEV
Sbjct: 892  DAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEV 951

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADRFQLGTEI TTGDN+WPMPVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DK
Sbjct: 952  QKLEADRFQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDK 1011

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+EAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESR 1071

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1131

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LKPEV+KKKELAKNVQCALEYTTLRSVTHATE+WYDP+P  TIIEEDV+FV S
Sbjct: 1132 TPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRS 1191

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDE++ P+KISPWLLRIELNREMM+DKKLSMADIAEKIN EFDDDL+CIFNDDNA+
Sbjct: 1192 YYEMPDEDIDPDKISPWLLRIELNREMMIDKKLSMADIAEKINREFDDDLSCIFNDDNAD 1251

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILRIRI NDDAPKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N+
Sbjct: 1252 KLILRIRITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKHGKVNK 1311

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            FD++EGFK D EW LDTEGVNLLAV+CHEDVD TRTTSNHLIEVIEVLGIEAVR+SLLDE
Sbjct: 1312 FDQSEGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDE 1371

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLD 1431

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVYAEAD LRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSY++GLDFGMTP
Sbjct: 1432 AAVYAEADLLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTP 1491

Query: 668  ARSPISGTPYHEGMMSPSYLLSPNVRSSPI-TDAQFSPYVGGMAF 537
            ARSPISGTPYHEGMMSPSYLLSPN+R+SPI TDA FSPYVG MAF
Sbjct: 1492 ARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1536


>ref|XP_008448514.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit 1 [Cucumis melo]
          Length = 1837

 Score = 1298 bits (3360), Expect = 0.0
 Identities = 642/704 (91%), Positives = 678/704 (96%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 832  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 891

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIESQKLDSLKMKKKEF+ +++YE +D +W P+YMLPEHVEDLKTIREFRNVF+AEV
Sbjct: 892  DAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEV 951

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR+QLGTEIATTG+N+WPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DK
Sbjct: 952  QKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDK 1011

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPG+D LS+EAQKNATL FNILLRSTFASKRVL EYRLTREAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESR 1071

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 1131

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LKPE +K KE AK VQCALEYTTLRSVT ATEVWYDP+P STIIEED+DFV S
Sbjct: 1132 TPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKS 1191

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDEE+APEKISPWLLRIELNREMMVDKKLSMA+IAEKIN EFDDDLTCIFNDDNAE
Sbjct: 1192 YYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAE 1251

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILRIRIMND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK+N+
Sbjct: 1252 KLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNK 1311

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            FDENEGFKP++EW LDTEGVNLLAV+CHEDVD  RTTSNHLIEVIEVLGIEAVR+SLLDE
Sbjct: 1312 FDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1371

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1431

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVYAE DHLRGVTENIMLGQLAPIGTGGCALYLND+ML+ AIELQLPSY+DGLDFGMTP
Sbjct: 1432 AAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTP 1491

Query: 668  ARSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            +RSPISGTPYHEGMMSP+YLLSPN+R SPI+DAQFSPYVGGMAF
Sbjct: 1492 SRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>gb|EMT20712.1| DNA-directed RNA polymerase II subunit RPB1 [Aegilops tauschii]
          Length = 1861

 Score = 1298 bits (3359), Expect = 0.0
 Identities = 640/705 (90%), Positives = 680/705 (96%), Gaps = 1/705 (0%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 832  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 891

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIESQKLDSLKMKK EFDNV++YE+DD +W P+YMLP+HV+DLKTIREFRNVF+AEV
Sbjct: 892  DAVWIESQKLDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRNVFEAEV 951

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR QLGTEI TTGDNTWPMPVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DK
Sbjct: 952  QKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDK 1011

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+E+FEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESR 1071

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1131

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATE+WYDP+P  TIIEEDV+FV S
Sbjct: 1132 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRS 1191

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDE++ P+KISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDL+CIFNDDNA+
Sbjct: 1192 YYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNAD 1251

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILR+RI ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N+
Sbjct: 1252 KLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKVNK 1311

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            FDE+EGFKPD EW LDTEGVNLLAV+CHEDVD TRTTSNHLIEVIEVLGIEAVR+SLLDE
Sbjct: 1312 FDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRRSLLDE 1371

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLD 1431

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVYAE+D+LRGVTENIMLGQLAPIGTGGC LYLNDQMLQQAIELQLPSY++GLD+GMTP
Sbjct: 1432 AAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEGLDYGMTP 1491

Query: 668  ARSPISGTPYHE-GMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            ARSP+S TPY + GMMSP  +LSPN R+SPITDAQFSPYVGGMAF
Sbjct: 1492 ARSPMSATPYRDGGMMSP--MLSPNFRASPITDAQFSPYVGGMAF 1534


>gb|EMS50869.1| DNA-directed RNA polymerase II subunit RPB1 [Triticum urartu]
          Length = 2040

 Score = 1298 bits (3359), Expect = 0.0
 Identities = 640/705 (90%), Positives = 680/705 (96%), Gaps = 1/705 (0%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 832  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 891

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIESQKLDSLKMKK EFDNV++YE+DD +W P+YMLP+HV+DLKTIREFRNVF+AEV
Sbjct: 892  DAVWIESQKLDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRNVFEAEV 951

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR QLGTEI TTGDNTWPMPVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DK
Sbjct: 952  QKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDK 1011

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+E+FEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESR 1071

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1131

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATE+WYDP+P  TIIEEDV+FV S
Sbjct: 1132 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRS 1191

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDE++ P+KISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDL+CIFNDDNA+
Sbjct: 1192 YYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNAD 1251

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILR+RI ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N+
Sbjct: 1252 KLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKVNK 1311

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            FDE+EGFKPD EW LDTEGVNLLAV+CHEDVD TRTTSNHLIEVIEVLGIEAVR+SLLDE
Sbjct: 1312 FDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRRSLLDE 1371

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLD 1431

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVYAE+D+LRGVTENIMLGQLAPIGTGGC LYLNDQMLQQAIELQLPSY++GLD+GMTP
Sbjct: 1432 AAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEGLDYGMTP 1491

Query: 668  ARSPISGTPYHE-GMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            ARSP+S TPY + GMMSP  +LSPN R+SPITDAQFSPYVGGMAF
Sbjct: 1492 ARSPMSATPYRDGGMMSP--MLSPNFRASPITDAQFSPYVGGMAF 1534


>dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1859

 Score = 1298 bits (3359), Expect = 0.0
 Identities = 640/705 (90%), Positives = 680/705 (96%), Gaps = 1/705 (0%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 832  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 891

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIESQKLDSLKMKK EFDNV++YE+DD +W P+YMLP+HV+DLKTIREFRNVF+AEV
Sbjct: 892  DAVWIESQKLDSLKMKKAEFDNVFRYELDDENWRPTYMLPDHVDDLKTIREFRNVFEAEV 951

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR QLGTEI TTGDNTWPMPVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DK
Sbjct: 952  QKLEADRLQLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDK 1011

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+E+FEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESR 1071

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1131

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATE+WYDP+P  TIIEEDV+FV S
Sbjct: 1132 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRS 1191

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDE++ P+KISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDL+CIFNDDNA+
Sbjct: 1192 YYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNAD 1251

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILR+RI ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N+
Sbjct: 1252 KLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKVNK 1311

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            FDE+EGFKPD EW LDTEGVNLLAV+CHEDVD TRTTSNHLIEVIEVLGIEAVR+SLLDE
Sbjct: 1312 FDESEGFKPDNEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVIEVLGIEAVRRSLLDE 1371

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLD 1431

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVYAE+D+LRGVTENIMLGQLAPIGTGGC LYLNDQMLQQAIELQLPSY++GLD+GMTP
Sbjct: 1432 AAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEGLDYGMTP 1491

Query: 668  ARSPISGTPYHE-GMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            ARSP+S TPY + GMMSP  +LSPN R+SPITDAQFSPYVGGMAF
Sbjct: 1492 ARSPMSATPYRDGGMMSP--MLSPNFRASPITDAQFSPYVGGMAF 1534


>ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
            gi|241940227|gb|EES13372.1| hypothetical protein
            SORBIDRAFT_07g003680 [Sorghum bicolor]
          Length = 1857

 Score = 1297 bits (3357), Expect = 0.0
 Identities = 640/705 (90%), Positives = 680/705 (96%), Gaps = 1/705 (0%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 831  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 890

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIESQKLDSLKMKK EFDN+++YE+DD +W P+YMLPEHV+DLKTIREFRNVF+AEV
Sbjct: 891  DAVWIESQKLDSLKMKKPEFDNLFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEV 950

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR+QLGTEIATTGDN+WPMPVNLKRLIWNAQKTF++D RRPSDMHPMEIVEAVDK
Sbjct: 951  QKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAVDK 1010

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+EAFEWVIGEIESR
Sbjct: 1011 LQERLKVVPGDDPMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESR 1070

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1071 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1130

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LKPEV++KKELAKNVQCALEYTTLRSVTHATE+WYDP+P  TIIEED +FV S
Sbjct: 1131 TPSLSVYLKPEVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQS 1190

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDE++ P+KISPWLLRIELNREMMVDKKLSMADIA+KIN EFDDDL+CIFNDDNA+
Sbjct: 1191 YYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIADKINREFDDDLSCIFNDDNAD 1250

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILRIRI ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N 
Sbjct: 1251 KLILRIRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNT 1310

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            F ++EGFK   EW LDTEGVNLLAV+CHEDVD TRTTSNHLIEVIEVLGIEAVR+SLLDE
Sbjct: 1311 FYQDEGFKAANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDE 1370

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLD
Sbjct: 1371 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLD 1430

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVYAE+DHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSY++GLDFGMTP
Sbjct: 1431 AAVYAESDHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTP 1490

Query: 668  ARSPISGTPYHEGMMSPSYLLSPNVRSSPI-TDAQFSPYVGGMAF 537
            ARSPISGTPYHEGMMSPSYLLSPN+R+SPI TDA FSPYVG MAF
Sbjct: 1491 ARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1535


>ref|XP_004146161.2| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Cucumis sativus]
            gi|778674691|ref|XP_011650276.1| PREDICTED: DNA-directed
            RNA polymerase II subunit 1 [Cucumis sativus]
            gi|700200498|gb|KGN55631.1| hypothetical protein
            Csa_3G002510 [Cucumis sativus]
          Length = 1867

 Score = 1295 bits (3350), Expect = 0.0
 Identities = 641/704 (91%), Positives = 677/704 (96%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 832  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 891

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIESQKLDSLKMKKKEF+ +++YE +D +W P+YMLPEHVEDLKTIREFRNVF+AEV
Sbjct: 892  DAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEV 951

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR+QLGTEIATTG+N+WPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DK
Sbjct: 952  QKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDK 1011

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPG+D LS+EAQKNATL FNILLRSTFASKRVL EYRLTREAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESR 1071

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 1131

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LKPE +K KE AK VQCALEYTTLRSVT ATEVWYDP+P STIIEED+DFV S
Sbjct: 1132 TPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKS 1191

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDEE+APEKISPWLLRIELNREMMVDKKLSMA+IAEKIN EFDDDLTCIFNDDNAE
Sbjct: 1192 YYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAE 1251

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILRIRIMND+APKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK+N+
Sbjct: 1252 KLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNK 1311

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            FDENEGFKP++EW LDTEGVNLLAV+ HEDVD  RTTSNHLIEVIEVLGIEAVR+SLLDE
Sbjct: 1312 FDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1371

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1431

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVYAE DHLRGVTENIMLGQLAPIGTGGCALYLND+ML+ AIELQLPSY+DGLDFGMTP
Sbjct: 1432 AAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTP 1491

Query: 668  ARSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            +RSPISGTPYHEGMMSP+YLLSPN+R SPI+DAQFSPYVGGMAF
Sbjct: 1492 SRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|NP_001292746.1| DNA-directed RNA polymerase II subunit 1 [Zea mays]
            gi|413917378|gb|AFW57310.1| RNA polymerase II large
            subunit family protein [Zea mays]
          Length = 1850

 Score = 1295 bits (3350), Expect = 0.0
 Identities = 637/705 (90%), Positives = 679/705 (96%), Gaps = 1/705 (0%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 831  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 890

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIESQKLDSLKMKK EFDNV++YE+DD +W P+YMLPEHV+DLKTIREFRNVF+AEV
Sbjct: 891  DAVWIESQKLDSLKMKKPEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEV 950

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR+QLG+EI TTGDN+WPMPVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DK
Sbjct: 951  QKLEADRYQLGSEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDK 1010

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+EAFEWVIGEIESR
Sbjct: 1011 LQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESR 1070

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1071 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1130

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LKP+V++KKELAKNVQCALEYTTLRSVTHATE+WYDP+P  TIIEED +FV S
Sbjct: 1131 TPSLSVYLKPQVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDTEFVQS 1190

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDE++ P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+CIFNDDNA+
Sbjct: 1191 YYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLSCIFNDDNAD 1250

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILRIRI ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GK+N 
Sbjct: 1251 KLILRIRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNT 1310

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            F +++GFK   EW LDTEGVNLLAV+CHEDVD TRTTSNHLIEVIEVLGIEAVR+SLLDE
Sbjct: 1311 FYQDDGFKAANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDE 1370

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLD
Sbjct: 1371 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLD 1430

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVYAE+DHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSY++GLDFGMTP
Sbjct: 1431 AAVYAESDHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTP 1490

Query: 668  ARSPISGTPYHEGMMSPSYLLSPNVRSSPI-TDAQFSPYVGGMAF 537
            ARSPI+GTPYHEGMMSPSYLLSPN+R+SPI TDA FSPYVG MAF
Sbjct: 1491 ARSPITGTPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1535


>ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Brachypodium
            distachyon]
          Length = 1862

 Score = 1293 bits (3345), Expect = 0.0
 Identities = 640/706 (90%), Positives = 680/706 (96%), Gaps = 2/706 (0%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 833  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 892

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            DAVWIE+QKLDSLKMKK EFDNVY+YE+DD +W P+YMLPEHV+DLKTIREFRNVF+AEV
Sbjct: 893  DAVWIETQKLDSLKMKKAEFDNVYRYELDDENWRPTYMLPEHVDDLKTIREFRNVFEAEV 952

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR QLGTEI TTGDN+WPMPVNLKRLIWNAQKTFK+D RRPSDMHPMEIVEA+DK
Sbjct: 953  QKLEADRLQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDK 1012

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPGDD +S+EAQKNATL FNILLRSTFASKRVLKEYRLT+E+FEWVIGEIESR
Sbjct: 1013 LQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESR 1072

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1073 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1132

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATE+WYDP+P  TIIEED+DFV S
Sbjct: 1133 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDMDFVKS 1192

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            YYEMPDE++ P+KISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDL+CIFNDDNA+
Sbjct: 1193 YYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNAD 1252

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILR+RI ND+APKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKIN+
Sbjct: 1253 KLILRVRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKINK 1312

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            FDEN+GFKPD EW LDTEGVNLLAV+CHEDVD TRTTSNHLIEVIEVLGIEAVR+SLLDE
Sbjct: 1313 FDENDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDE 1372

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLD
Sbjct: 1373 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLD 1432

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDF-GMT 672
            AAVYAE+D+LRGVTENIMLGQLAPIGTGGC LYLNDQMLQQAIELQLPSY++GL++ GMT
Sbjct: 1433 AAVYAESDYLRGVTENIMLGQLAPIGTGGCGLYLNDQMLQQAIELQLPSYVEGLEYIGMT 1492

Query: 671  PARSPISGTPYHE-GMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            PAR+  SGTPYH+ GMMSP  +LSPN RSSPI+DAQFSPYVGGMAF
Sbjct: 1493 PARASPSGTPYHDGGMMSP--MLSPNFRSSPISDAQFSPYVGGMAF 1536


>ref|XP_010029631.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Eucalyptus
            grandis] gi|629090320|gb|KCW56573.1| hypothetical protein
            EUGRSUZ_I02304 [Eucalyptus grandis]
          Length = 1852

 Score = 1288 bits (3334), Expect = 0.0
 Identities = 635/704 (90%), Positives = 675/704 (95%)
 Frame = -2

Query: 2648 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 2469
            FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM
Sbjct: 832  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 891

Query: 2468 DAVWIESQKLDSLKMKKKEFDNVYKYEIDDNHWNPSYMLPEHVEDLKTIREFRNVFDAEV 2289
            D+VWIESQKLDSLKMKK EFD V++YEIDD +WNP YMLPE+ EDL++I E R+VFDAEV
Sbjct: 892  DSVWIESQKLDSLKMKKTEFDRVFRYEIDDENWNPDYMLPENAEDLRSIGELRDVFDAEV 951

Query: 2288 QKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDK 2109
            QKLEADR+QLGTEIATTGDNTWP+PVNLKRLIWNAQKTFK+D RRPSD+HP+E+VEA+DK
Sbjct: 952  QKLEADRYQLGTEIATTGDNTWPLPVNLKRLIWNAQKTFKIDLRRPSDIHPVEVVEAIDK 1011

Query: 2108 LQERLKVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1929
            LQERLKVVPG+D LS+EAQKNATL FNILLRSTFASKRVLKEYRLTREAF+WVIGEIESR
Sbjct: 1012 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESR 1071

Query: 1928 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1749
            FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1131

Query: 1748 TPSLSVFLKPEVSKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPTSTIIEEDVDFVNS 1569
            TPSLSV+LKPEVSK KE AK VQCALEYTTLRSVT ATEVWYDP+PTST IEED+DFV S
Sbjct: 1132 TPSLSVYLKPEVSKTKENAKTVQCALEYTTLRSVTQATEVWYDPDPTSTRIEEDIDFVKS 1191

Query: 1568 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAE 1389
            Y EMPDEE++PEKISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL CIFNDDNA+
Sbjct: 1192 YIEMPDEEISPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLNCIFNDDNAD 1251

Query: 1388 KLILRIRIMNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINR 1209
            KLILRIRIMND+ PKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+GK+N+
Sbjct: 1252 KLILRIRIMNDEVPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 1311

Query: 1208 FDENEGFKPDVEWTLDTEGVNLLAVLCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDE 1029
            F+EN+GFKP+ EW LDTEGVNLLAV+CHE VD TRTTSNHLIE+IEVLGIEAVR+SLLDE
Sbjct: 1312 FNENDGFKPETEWMLDTEGVNLLAVMCHEGVDATRTTSNHLIEIIEVLGIEAVRRSLLDE 1371

Query: 1028 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 849
            LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLD 1431

Query: 848  AAVYAEADHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMDGLDFGMTP 669
            AAVYAE+D+LRGVTENIMLGQLAPIGTG CALYLND+ML+ AIELQLPSYMDGLDFGMTP
Sbjct: 1432 AAVYAESDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKHAIELQLPSYMDGLDFGMTP 1491

Query: 668  ARSPISGTPYHEGMMSPSYLLSPNVRSSPITDAQFSPYVGGMAF 537
            ARSPISGTPYHEGMMSPSYLLSPN+R SP TDAQFSPYVGGMAF
Sbjct: 1492 ARSPISGTPYHEGMMSPSYLLSPNLRLSPTTDAQFSPYVGGMAF 1535