BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Anemarrhena21_contig00005454
         (3120 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         751   0.0  
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]         748   0.0  
gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subc...   746   0.0  
gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group...   746   0.0  
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s...   746   0.0  
gb|ABF98943.1| retrotransposon protein, putative, unclassified, ...   746   0.0  
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-...   746   0.0  
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   746   0.0  
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   746   0.0  
dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica ...   742   0.0  
gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subc...   746   0.0  
gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group...   745   0.0  
gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Jap...   746   0.0  
gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]     744   0.0  
gb|ABA98555.1| retrotransposon protein, putative, Ty1-copia subc...   743   0.0  
gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subc...   747   0.0  
gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japo...   747   0.0  
gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subc...   749   0.0  
gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subc...   743   0.0  
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]         743   0.0  

>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  751 bits (1938), Expect(2) = 0.0
 Identities = 365/661 (55%), Positives = 474/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+TFIDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + ++WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRIWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVL 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TIIE+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIIESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 94.7 bits (234), Expect(2) = 0.0
 Identities = 64/281 (22%), Positives = 105/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q HE Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQIGHLARKCPQRK 259


>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
          Length = 1302

 Score =  748 bits (1930), Expect(2) = 0.0
 Identities = 365/661 (55%), Positives = 473/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S   SS
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKSS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAKERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEIENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPSEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEAI SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAICSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 95.1 bits (235), Expect(2) = 0.0
 Identities = 64/281 (22%), Positives = 105/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q HE Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 259


>gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  746 bits (1927), Expect(2) = 0.0
 Identities = 363/661 (54%), Positives = 472/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 95.1 bits (235), Expect(2) = 0.0
 Identities = 64/281 (22%), Positives = 105/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q HE Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 259


>gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|51854387|gb|AAU10767.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  746 bits (1927), Expect(2) = 0.0
 Identities = 363/661 (54%), Positives = 472/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 95.1 bits (235), Expect(2) = 0.0
 Identities = 64/281 (22%), Positives = 105/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q HE Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 259


>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
            Group]
          Length = 1911

 Score =  746 bits (1926), Expect(2) = 0.0
 Identities = 363/661 (54%), Positives = 472/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 95.1 bits (235), Expect(2) = 0.0
 Identities = 64/281 (22%), Positives = 105/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q HE Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 259


>gb|ABF98943.1| retrotransposon protein, putative, unclassified, expressed [Oryza
            sativa Japonica Group]
          Length = 1460

 Score =  746 bits (1926), Expect(2) = 0.0
 Identities = 363/661 (54%), Positives = 472/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 95.1 bits (235), Expect(2) = 0.0
 Identities = 64/281 (22%), Positives = 105/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q HE Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 259


>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  746 bits (1926), Expect(2) = 0.0
 Identities = 363/661 (54%), Positives = 472/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 95.1 bits (235), Expect(2) = 0.0
 Identities = 64/281 (22%), Positives = 105/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q HE Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 259


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  746 bits (1926), Expect(2) = 0.0
 Identities = 363/661 (54%), Positives = 472/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 95.1 bits (235), Expect(2) = 0.0
 Identities = 64/281 (22%), Positives = 105/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q HE Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 259


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  746 bits (1926), Expect(2) = 0.0
 Identities = 363/661 (54%), Positives = 472/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 95.1 bits (235), Expect(2) = 0.0
 Identities = 64/281 (22%), Positives = 105/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q HE Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 259


>dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score =  742 bits (1915), Expect(2) = 0.0
 Identities = 357/658 (54%), Positives = 470/658 (71%), Gaps = 8/658 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S DWW+D+GANIH+C D S F SYQ  RG S+ + + S   + G G +DLK
Sbjct: 254  LPTVLSVCHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSLAAVHGVGTVDLK 313

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++++NL+S S L R G+R+V ESNK V+SK   FIGKG+   GL
Sbjct: 314  FTSGKIVQLKNVQHVPSIKKNLVSGSLLCRDGFRLVFESNKCVVSKYGTFIGKGYDSGGL 373

Query: 1591 FRLNVINPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSSRCE 1412
            FR + ++   NK+   ++ + +  ++WH RL HVNF  + ++ N++LIPK +    S+C 
Sbjct: 374  FRFS-LDDMCNKVVNHVSDDDDESNVWHSRLCHVNFGCMTRLANMSLIPKFTLVKGSKCH 432

Query: 1411 ICVQGKFTRKPFP-SITRTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCYTYL 1235
             CVQ K  RKP   S  R   PLEL+HSD+C+ N VLT+GG++YF+T IDD +RFCY YL
Sbjct: 433  TCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDDCTRFCYVYL 492

Query: 1234 LKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTAPYT 1055
            LKTKDE L +FK+YKAE ENQ + KIK LRSDRGGEY SNE T FC+E+GIIHE T PY+
Sbjct: 493  LKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFTSFCEEYGIIHERTPPYS 552

Query: 1054 PQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQHWK 875
            PQSNGVAERKNRTL +MVN ML ++G  +  WGEA+L+AC +LNRIP +  ++TP++ W+
Sbjct: 553  PQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAILTACHVLNRIPTKHKEVTPFEEWE 612

Query: 874  GRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEISDIS 695
             +  N+   + WGCLAKV++P  KKRK+GPKTVD +F+GYA+ S   RFL++NS + D+ 
Sbjct: 613  RKKLNLSHLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYRFLIVNSGVPDMR 672

Query: 694  NNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXID-------IEPR 536
              TI E+RDA +FEN FP                              +       +  R
Sbjct: 673  VGTITESRDATFFENEFPMKNAPSTSSQEPILSPEHFVPIEHIDQTLEENPEEDNIVATR 732

Query: 535  RSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWILTD 356
            +SKR +T KSFG+D+  YLV+  P + +EA  S ++ +WKEA+ SE+ SIM N TW + +
Sbjct: 733  KSKRQRTAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMDSIMSNGTWEVVE 792

Query: 355  LPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSIRVL 176
             P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++IRVL
Sbjct: 793  RPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVL 852

Query: 175  LALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLKQ 2
            LALA+ H + +HQMDVK AFLNG+LEEEIYMDQP+G++ +GQE  VCKL+KSLYGLKQ
Sbjct: 853  LALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKSLYGLKQ 910



 Score = 99.4 bits (246), Expect(2) = 0.0
 Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 4/212 (1%)
 Frame = -2

Query: 2606 CLHR--ILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSSSFNKFMMTDSK 2433
            CL R  ++S LADN+ D+Y    S K++W ALE ++G+ DAG   +    F  + M D +
Sbjct: 29   CLFRGALISVLADNIVDVYMHIPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDR 88

Query: 2432 PINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRHKQGDLTLVQAL 2253
             + +Q HE Q  ++  ++   +  D +    +I KLPPSW++FA  L+HK+ + ++   +
Sbjct: 89   SVVEQAHEIQMLVKELENNHCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVTDLI 148

Query: 2252 KAIRIEDQHR--QNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 2079
             ++ IE++ R   N   K E  +  NLV+                               
Sbjct: 149  GSLGIEEKARAKDNRGKKIEGGSSANLVQ--------KKNPHASHNNNKKVKPDVKPKAT 200

Query: 2078 XXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                  G+      C+VCG+  H A  C  RK
Sbjct: 201  TNFKKKGKGKAKGDCFVCGKPGHWAKDCPERK 232


>gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  746 bits (1927), Expect(2) = 0.0
 Identities = 363/661 (54%), Positives = 472/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 94.0 bits (232), Expect(2) = 0.0
 Identities = 64/281 (22%), Positives = 105/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q HE Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAHEIQTMAKVLELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 259


>gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53749238|gb|AAU90098.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  745 bits (1924), Expect(2) = 0.0
 Identities = 363/661 (54%), Positives = 472/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDANYWKEAVRSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQECKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 95.1 bits (235), Expect(2) = 0.0
 Identities = 64/281 (22%), Positives = 105/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q HE Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 259


>gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score =  746 bits (1927), Expect(2) = 0.0
 Identities = 363/661 (54%), Positives = 472/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 94.0 bits (232), Expect(2) = 0.0
 Identities = 64/281 (22%), Positives = 105/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q HE Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAHEIQTMAKVLELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 259


>gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1861

 Score =  744 bits (1920), Expect(2) = 0.0
 Identities = 363/661 (54%), Positives = 471/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GANIH+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 702  LPTVFSVNQSTNWWIDTGANIHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 761

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 762  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 821

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 822  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 878

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 879  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 938

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 939  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 998

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            P +P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 999  PCSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 1058

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 1059 IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 1118

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 1119 DMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 1178

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 1179 APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE 1238

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 1239 VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 1298

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 1299 RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLK 1358

Query: 4    Q 2
            Q
Sbjct: 1359 Q 1359



 Score = 95.9 bits (237), Expect(2) = 0.0
 Identities = 67/293 (22%), Positives = 111/293 (37%)
 Frame = -2

Query: 2861 FSMATKDLSKSAKPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXX 2682
            F+MA    + + +P+KF+G  +KRW  ++  WLT +            +           
Sbjct: 413  FTMA--GFADALRPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQF-- 468

Query: 2681 XXXXXXXXXXXXSCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYG 2502
                               EE     +  ILS L D L ++Y     AKELW AL  ++G
Sbjct: 469  -------------------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFG 509

Query: 2501 LDDAGIIRFSSSSFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLP 2322
              DA    +    F+ + M D++ + +Q HE Q   +  +       D +   C+I KLP
Sbjct: 510  ATDASNDLYIMEQFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLP 569

Query: 2321 PSWANFAGDLRHKQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXX 2142
            PSW +F   L+HK+ + ++   + ++ +E++ R+                D         
Sbjct: 570  PSWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVV 620

Query: 2141 XXXXXXXXXXXXXXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                                      +    D R C+VCG+  HLA +C  RK
Sbjct: 621  HKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 673


>gb|ABA98555.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1361

 Score =  743 bits (1919), Expect(2) = 0.0
 Identities = 362/661 (54%), Positives = 472/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 373  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 432

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S+S L+R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 433  FTSGKIVQLKNVQHVPSIDRNLVSDSRLIRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 492

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 493  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 549

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  S   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 550  KCHSCVQSKQPRKPHKSAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 609

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   F +EHGIIHE T 
Sbjct: 610  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFFEEHGIIHERTP 669

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 670  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 729

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 730  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 789

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 790  DMHVGTIMESRDATFFESFFPMKDIHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 849

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 850  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE 909

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSP AR+++I
Sbjct: 910  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPGARLTTI 969

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 970  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLK 1029

Query: 4    Q 2
            Q
Sbjct: 1030 Q 1030



 Score = 95.9 bits (237), Expect(2) = 0.0
 Identities = 67/293 (22%), Positives = 111/293 (37%)
 Frame = -2

Query: 2861 FSMATKDLSKSAKPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXX 2682
            F+MA    + + +P+KF+G  +KRW  ++  WLT +            +           
Sbjct: 84   FTMA--GFADALRPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQF-- 139

Query: 2681 XXXXXXXXXXXXSCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYG 2502
                               EE     +  ILS L D L ++Y     AKELW AL  ++G
Sbjct: 140  -------------------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFG 180

Query: 2501 LDDAGIIRFSSSSFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLP 2322
              DA    +    F+ + M D++ + +Q HE Q   +  +       D +   C+I KLP
Sbjct: 181  ATDASNDLYIMEQFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLP 240

Query: 2321 PSWANFAGDLRHKQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXX 2142
            PSW +F   L+HK+ + ++   + ++ +E++ R+                D         
Sbjct: 241  PSWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVV 291

Query: 2141 XXXXXXXXXXXXXXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                                      +    D R C+VCG+  HLA +C  RK
Sbjct: 292  HKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 344


>gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  747 bits (1928), Expect(2) = 0.0
 Identities = 363/661 (54%), Positives = 472/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIMESRDATFFESFFPMKDTHNGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVHSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 92.4 bits (228), Expect(2) = 0.0
 Identities = 63/281 (22%), Positives = 104/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGILTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q  E Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAQEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 259


>gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score =  747 bits (1928), Expect(2) = 0.0
 Identities = 363/661 (54%), Positives = 472/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIMESRDATFFESFFPMKDTHNGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVHSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 92.4 bits (228), Expect(2) = 0.0
 Identities = 63/281 (22%), Positives = 104/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGILTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q  E Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAQEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 259


>gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1287

 Score =  749 bits (1935), Expect(2) = 0.0
 Identities = 363/661 (54%), Positives = 474/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LP V S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 249  LPAVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 308

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 309  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 368

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 369  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 425

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+TFIDD +RFCY
Sbjct: 426  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCY 485

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE+T 
Sbjct: 486  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHEMTP 545

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++  +LNR+P R+ D TPY+
Sbjct: 546  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYE 605

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 606  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 665

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA++FE+ FP                               +       
Sbjct: 666  DMHVGTIMESRDAIFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 725

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 726  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE 785

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 786  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 845

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 846  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLK 905

Query: 4    Q 2
            Q
Sbjct: 906  Q 906



 Score = 89.7 bits (221), Expect(2) = 0.0
 Identities = 52/204 (25%), Positives = 84/204 (41%)
 Frame = -2

Query: 2594 ILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSSSFNKFMMTDSKPINDQI 2415
            ILS L D L ++Y     AKELW AL  ++G  DA    +    F+ + M D++ + +Q 
Sbjct: 26   ILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSVVEQA 85

Query: 2414 HEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRHKQGDLTLVQALKAIRIE 2235
            HE Q   +  +       D +   C+I KLPPSW +F   L+HK+ + ++   + ++ +E
Sbjct: 86   HEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLDVE 145

Query: 2234 DQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGQ 2055
            ++ R+                D                                   +  
Sbjct: 146  EKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNP 196

Query: 2054 KSDARFCYVCGRTNHLAPQCFHRK 1983
              D R C+VCG+  HLA +C  RK
Sbjct: 197  NQDERTCFVCGQVGHLARKCPQRK 220


>gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  743 bits (1919), Expect(2) = 0.0
 Identities = 362/661 (54%), Positives = 471/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LPTV S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D KIK LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  W EALL++  +LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWREALLTSNHVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 95.1 bits (235), Expect(2) = 0.0
 Identities = 64/281 (22%), Positives = 105/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q HE Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 259


>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  743 bits (1919), Expect(2) = 0.0
 Identities = 360/661 (54%), Positives = 472/661 (71%), Gaps = 11/661 (1%)
 Frame = -3

Query: 1951 LPTVNSITFSSDWWLDSGANIHICTDRSWFKSYQEQRGGSVSLADDSTREIRGTGRIDLK 1772
            LP+V S+  S++WW+D+GAN+H+C D S F SYQ  RG +V + + S   + G G +DLK
Sbjct: 288  LPSVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHGVGTVDLK 347

Query: 1771 MTSGKILILQNVLHVPTLRRNLISESSLLRAGYRIVKESNKFVISKSSIFIGKGFVCDGL 1592
             TSGKI+ L+NV HVP++ RNL+S S L R G+++V ESNK V+SK   FIGKG+ C GL
Sbjct: 348  FTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYECGGL 407

Query: 1591 FRLNV---INPSINKIPTPIALNIESCDLWHGRLGHVNFNSIKKMINLNLIPKSSFETSS 1421
            FR ++    N S+N I   +    +  ++WH RL H+NF  + ++ ++ LIPK S    S
Sbjct: 408  FRFSLSDFCNKSVNHICGSVD---DEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGS 464

Query: 1420 RCEICVQGKFTRKPFPSIT-RTSKPLELIHSDVCDSNRVLTRGGRRYFVTFIDDHSRFCY 1244
            +C  CVQ K  RKP  +   R   PLEL+HSD+C+ N VLT+GG+RYF+T IDD +RFCY
Sbjct: 465  KCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFMTLIDDATRFCY 524

Query: 1243 TYLLKTKDEVLDWFKVYKAEAENQRDSKIKILRSDRGGEYTSNEMTEFCQEHGIIHEVTA 1064
             YLLKTKDE LD+FK+YKAE ENQ D +I  LRSDRGGE+ SNE   FC+EHGIIHE T 
Sbjct: 525  VYLLKTKDEALDYFKIYKAEVENQLDRRINRLRSDRGGEFFSNEFDLFCEEHGIIHERTP 584

Query: 1063 PYTPQSNGVAERKNRTLMDMVNCMLLSSGAPENLWGEALLSACFILNRIPQRDSDITPYQ 884
            PY+P+SNG+AERKNRTL D+VN ML ++G P+  WGEALL++ ++LNR+P R+ D TPY+
Sbjct: 585  PYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNYVLNRVPNRNKDKTPYE 644

Query: 883  HWKGRTPNIHFFKVWGCLAKVSIPEPKKRKIGPKTVDAIFIGYALDSNVNRFLVINSEIS 704
             W GR P++ + + WGCLAKV++P  KKRK+GPKTVD +F+GYA  S   RFL++ SE+ 
Sbjct: 645  IWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVP 704

Query: 703  DISNNTIIEARDAVYFENTFPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDIE------ 542
            D+   TI+E+RDA +FE+ FP                               +       
Sbjct: 705  DMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEEDVSE 764

Query: 541  -PRRSKRAKTIKSFGEDFFTYLVEGDPSSFKEAMDSSESPFWKEAIDSEIKSIMENNTWI 365
             PRRSKR +T KSFG+DF  YLV+  P S  EA  S ++ +WKEA+ SE+ SI+ N TW 
Sbjct: 765  APRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE 824

Query: 364  LTDLPPGCKPVGCKWIFKKKLRPDGTVDKYKARLVAKGFTQQKGIDFFDTYSPVARISSI 185
            +T+ P GCKPVGCKW+FKKKLRPDGT++KYKARLVAKG+TQ++G DFFDTYSPVAR+++I
Sbjct: 825  VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTI 884

Query: 184  RVLLALASIHNMFIHQMDVKIAFLNGDLEEEIYMDQPEGFIAKGQEHKVCKLVKSLYGLK 5
            RVLL+LA+ H + +HQMDVK AFLNG+L+EEIYMDQP+GF+ +GQE KVCKL+KSLYGLK
Sbjct: 885  RVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLK 944

Query: 4    Q 2
            Q
Sbjct: 945  Q 945



 Score = 95.1 bits (235), Expect(2) = 0.0
 Identities = 64/281 (22%), Positives = 105/281 (37%)
 Frame = -2

Query: 2825 KPEKFSGTFYKRWANQMRYWLTTLGLISAIDSSIPALXXXXXXXXXXXXXXXXXXXXXXX 2646
            +P+KF+G  +KRW  ++  WLT +            +                       
Sbjct: 9    RPDKFTGVHFKRWQIRVTMWLTAMKCFWVSTGKPEGVLTAEQQKQF-------------- 54

Query: 2645 SCSYLKPEEIDYHCLHRILSALADNLYDIYYEYKSAKELWTALEDEYGLDDAGIIRFSSS 2466
                   EE     +  ILS L D L ++Y     AKELW AL  ++G  DA    +   
Sbjct: 55   -------EEATTLFVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIME 107

Query: 2465 SFNKFMMTDSKPINDQIHEFQDYIRHFQSKGNQFSDDYKVSCLIDKLPPSWANFAGDLRH 2286
             F+ + M D++ + +Q HE Q   +  +       D +   C+I KLPPSW +F   L+H
Sbjct: 108  QFHDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKH 167

Query: 2285 KQGDLTLVQALKAIRIEDQHRQNSKTKPEMKAKVNLVEDXXXXXXXXXXXXXXXXXXXXX 2106
            K+ + ++   + ++ +E++ R+                D                     
Sbjct: 168  KRQEYSVEGLIASLDVEEKAREKDAASK---------GDGGQSSANVVHKAQNKSKGKYK 218

Query: 2105 XXXXXXXXXXXXXXSGQKSDARFCYVCGRTNHLAPQCFHRK 1983
                          +    D R C+VCG+  HLA +C  RK
Sbjct: 219  AQQTTNFKKQKKNNNNPNQDERTCFVCGQVGHLARKCPQRK 259