BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia26_contig00005338
         (3320 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1463   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1441   0.0  
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...  1416   0.0  
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...  1414   0.0  
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...  1409   0.0  
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob...  1406   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1405   0.0  
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...  1395   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1394   0.0  
ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theob...  1392   0.0  
ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prun...  1388   0.0  
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...  1381   0.0  
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...  1370   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1357   0.0  
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...  1354   0.0  
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub...  1346   0.0  
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...  1335   0.0  
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...  1333   0.0  
gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus...  1328   0.0  
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...  1317   0.0  

>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1463 bits (3788), Expect = 0.0
 Identities = 717/1004 (71%), Positives = 832/1004 (82%), Gaps = 5/1004 (0%)
 Frame = -3

Query: 2997 LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 2818
            L++E L  FC++ ++ FF+EYGLI HQI+S+N FI+NGIQ++FDS GEI VEPGYDPSK+
Sbjct: 41   LNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKR 100

Query: 2817 GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSV 2638
            G+G+WRYA+V FGKVTLE P  W+ E    D KE L  +PRHARLQNMTYSSRMK ++  
Sbjct: 101  GEGDWRYASVRFGKVTLERPRVWAGES---DGKESLNFLPRHARLQNMTYSSRMKAQVHF 157

Query: 2637 QVYTQKLMKSDKFKTGKE-QFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDF 2461
            QVYTQKL++SDK+KTGK+ ++V+K V  ED RD+LIGRIPVMV+S LCWMNG+++GDC++
Sbjct: 158  QVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEY 217

Query: 2460 DHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESI 2281
            DHGGYFLIKGAEKTFIAQEQICLKRLWVS  P W VAYR   KR+RVY+KL    +  + 
Sbjct: 218  DHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNR 277

Query: 2280 QGLKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENC 2101
             G K+L V F S  IP+WILFF LG SSD+E++++ID N+DD  + NIL+A+I  AD   
Sbjct: 278  GGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREA 337

Query: 2100 EG----FRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKC 1933
            E     FR++G  + ++D L+   KFPPGE I++C+ KYLFP    +K KA FLGYMVKC
Sbjct: 338  EKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKC 397

Query: 1932 LLLSYTGRRKCENRDDFRNKXXXXXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRP 1753
            LL +YTGRRKC+NRDDFRNK             RVHIRHAERRMVKAMQR+LYGDR+LRP
Sbjct: 398  LLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRP 457

Query: 1752 IEHYLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVA 1573
            IE+YLDASIITNGLSRAFSTG WSHPFKR ER +GVVATLRRTNPLQMTAD+RKTRQQV 
Sbjct: 458  IENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQ 517

Query: 1572 YTGKVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGME 1393
            YTGKVGDAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLVST +++PL+DKL  CGME
Sbjct: 518  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGME 577

Query: 1392 NLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGE 1213
             L DD S T L G++KVFL+G+WVG+C+  +SFV+ LR+KRR K++P +VEIKRD+QQGE
Sbjct: 578  KLVDDTS-TKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGE 636

Query: 1212 VRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIK 1033
            VRIFSDAGRILRPLLVVENLKK+  FKG  + FQS                DC TAWGIK
Sbjct: 637  VRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIK 696

Query: 1032 YLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTT 853
            YLL G  D P V YTHCELD+SFLLGLSCGIIP+ANHDHARRVLYQSEKHSQQAIGFSTT
Sbjct: 697  YLLKG-HDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTT 755

Query: 852  NPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVH 673
            NPNIRVDTLSHQLYYPQRPLFRTM+SD LG+P Y  GH  ++P+PEYFNGQ AIVAVNVH
Sbjct: 756  NPNIRVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVH 815

Query: 672  QGYNQEDSLVMNQASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIG 493
             GYNQEDSLVMN+ASLERGMFR+EH+R+YK+EVDN E  + KR K++D V FGK+QSKIG
Sbjct: 816  LGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKR-KSEDSVHFGKMQSKIG 874

Query: 492  RVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNY 313
            RVDSLDDDGFPFIGANLQ+GDIVIGR AESG DHSIKLKHTERG VQKVV+SAND+G N+
Sbjct: 875  RVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNF 934

Query: 312  AVVSLRQVRLPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTP 133
            AVVSLRQVR PCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTP
Sbjct: 935  AVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 994

Query: 132  GQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQLHRSGYSRW 1
            GQLLEAALGKGIAC G  R+ATPFST SVD I DQLHR+G+SRW
Sbjct: 995  GQLLEAALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRW 1038


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1441 bits (3730), Expect = 0.0
 Identities = 712/1004 (70%), Positives = 824/1004 (82%), Gaps = 5/1004 (0%)
 Frame = -3

Query: 2997 LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 2818
            L++E L  FC++ ++ FF+EYGLI HQI+S+N FI+NGIQ++FDS GEI VEPGYDPSK+
Sbjct: 77   LNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKR 136

Query: 2817 GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSV 2638
            G+G+WRYA+V FGKVTLE P  W+ E    D KE L  +PRHARLQNMTYSSRMK ++  
Sbjct: 137  GEGDWRYASVRFGKVTLERPRVWAGES---DGKESLNFLPRHARLQNMTYSSRMKAQVHF 193

Query: 2637 QVYTQKLMKSDKFKTGKE-QFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDF 2461
            QVYTQKL++SDK+KTGK+ ++V+K V  ED RD+LIGRIPVMV+S LCWMNG+++GDC++
Sbjct: 194  QVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEY 253

Query: 2460 DHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESI 2281
            DHGGYFLIKGAEKTFIAQEQICLKRLWVS  P W VAYR   KR+RVY+KL    +  + 
Sbjct: 254  DHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNR 313

Query: 2280 QGLKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENC 2101
             G K+L V F S  IP+WILFF LG SSD+E++++ID N+DD  + NIL+A+I  AD   
Sbjct: 314  GGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREA 373

Query: 2100 EG----FRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKC 1933
            E     FR++G  + ++D L+   KFPPGE I++C+ KYLFP    +K KA FLGYMVKC
Sbjct: 374  EKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKC 433

Query: 1932 LLLSYTGRRKCENRDDFRNKXXXXXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRP 1753
            LL +YTGRRKC+NRDDFRNK             RVHIRHAERRMVKAMQR+LYGDR+LRP
Sbjct: 434  LLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRP 493

Query: 1752 IEHYLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVA 1573
            IE+YLDASIITNGLSRAFSTG WSHPFKR ER +GVVATLRRTNPLQMTAD+RKTRQQV 
Sbjct: 494  IENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQ 553

Query: 1572 YTGKVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGME 1393
            YTGKVGDAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLVST +++PL+DKL  CGME
Sbjct: 554  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGME 613

Query: 1392 NLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGE 1213
             L DD S T L G++KVFL+G+WVG+C+  +SFV+ LR+KRR K++P +VEIKRD+QQGE
Sbjct: 614  KLVDDTS-TKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGE 672

Query: 1212 VRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIK 1033
            VRIFSDAGRILRPLLVVENLKK+  FKG  + FQS                DC TAWGIK
Sbjct: 673  VRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIK 732

Query: 1032 YLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTT 853
            YLL G  D P V YTHCELD+SFLLGLSCGIIP+ANHDHARRVLYQSEKHSQQAIGFSTT
Sbjct: 733  YLLKG-HDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTT 791

Query: 852  NPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVH 673
            NPNIRVDTLSHQLYYPQRPLFRTM+SD              LP+PEYFNGQ AIVAVNVH
Sbjct: 792  NPNIRVDTLSHQLYYPQRPLFRTMISD--------------LPRPEYFNGQIAIVAVNVH 837

Query: 672  QGYNQEDSLVMNQASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIG 493
             GYNQEDSLVMN+ASLERGMFR+EH+R+YK+EVDN E  + KR K++D V FGK+QSKIG
Sbjct: 838  LGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKR-KSEDSVHFGKMQSKIG 896

Query: 492  RVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNY 313
            RVDSLDDDGFPFIGANLQ+GDIVIGR AESG DHSIKLKHTERG VQKVV+SAND+G N+
Sbjct: 897  RVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNF 956

Query: 312  AVVSLRQVRLPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTP 133
            AVVSLRQVR PCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTP
Sbjct: 957  AVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 1016

Query: 132  GQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQLHRSGYSRW 1
            GQLLEAALGKGIAC G  R+ATPFST SVD I DQLHR+G+SRW
Sbjct: 1017 GQLLEAALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRW 1060


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score = 1416 bits (3666), Expect = 0.0
 Identities = 699/1001 (69%), Positives = 812/1001 (81%), Gaps = 2/1001 (0%)
 Frame = -3

Query: 2997 LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 2818
            L E  L  FC++AS  FF +YGLISHQI+SYN FI  GIQ++FDS+GEI VEPGYDPSK+
Sbjct: 61   LGETYLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKR 120

Query: 2817 GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDS-KEFLKLMPRHARLQNMTYSSRMKVEMS 2641
            G G+W++A+V FGKVTLE P FW+ EK   D  KE+L L+PRHARLQNMTYS+R+ VE  
Sbjct: 121  GDGDWKHASVKFGKVTLERPKFWAGEKFSADGGKEYLDLLPRHARLQNMTYSARIMVETH 180

Query: 2640 VQVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDF 2461
            VQVYT+KL++SDKFKTG +QFV K  E EDKRDVLIGRIPVMV S LCWMNG+ K DC+F
Sbjct: 181  VQVYTKKLVRSDKFKTGVDQFVDKECEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEF 240

Query: 2460 DHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESI 2281
            DHGGYF++KGAEKTFIAQEQ+CLKRLWVS  P W V YR   KR+RVY+KL +    E I
Sbjct: 241  DHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHI 300

Query: 2280 QG-LKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADEN 2104
            +G  K L+V  L+  +P+W+LFF LG+SSDRE++ +IDV+++D  +VNIL+A+I  AD+N
Sbjct: 301  KGGEKALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKN 359

Query: 2103 CEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLL 1924
            CE FRK  K L Y+D L+   KFPP E +++C++ YLFP L   K KA FLGYMVKCLL 
Sbjct: 360  CEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLH 419

Query: 1923 SYTGRRKCENRDDFRNKXXXXXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRPIEH 1744
            S+ GRRK +NRDDFRNK             R HI+HAERRMVKAMQRDLYGDR ++PIEH
Sbjct: 420  SFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEH 479

Query: 1743 YLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTG 1564
            YLDASIITNGLSRAFSTG W HP+KR ER +GVVATLRRTNPLQMTAD+RK+RQQV YTG
Sbjct: 480  YLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTG 539

Query: 1563 KVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLA 1384
            KVGDAR+P+PSHWGKLCFLSTPDGENCGLVKN+A+ GLVST +++P L+ L  CGM+ L 
Sbjct: 540  KVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLV 599

Query: 1383 DDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRI 1204
            DD   TSL G+ KV L+GEWVG+C+ S  FV  LR KRR  ++P +VE+KRD+ QGEVRI
Sbjct: 600  DD-CATSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 658

Query: 1203 FSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIKYLL 1024
            FSD+GRILRPLLVV NLKKI   KGG Y FQS                DC+TAWG++Y+L
Sbjct: 659  FSDSGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIEFIGPEEEEDCRTAWGVEYIL 718

Query: 1023 TGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPN 844
              DK+ P   YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFST NPN
Sbjct: 719  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 778

Query: 843  IRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGY 664
             RVDT +HQLYYPQRPLFRTML+D+LG+P+  +    +LP+PEYFNGQ AIVAVNVH GY
Sbjct: 779  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCTQYQKGMLPRPEYFNGQCAIVAVNVHLGY 838

Query: 663  NQEDSLVMNQASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVD 484
            NQEDSLVMN+ASLERGMFR+EHVR+YKAEVDNKE    K+LK +D V+FGK QSKIGRVD
Sbjct: 839  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAM-AKKLKIEDSVNFGKTQSKIGRVD 897

Query: 483  SLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVV 304
            SLDDDGFPFIGANLQSGDI+IG+ AESGADHS+KLKHTERG VQKV+LSANDEG N+AVV
Sbjct: 898  SLDDDGFPFIGANLQSGDIIIGKFAESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVV 957

Query: 303  SLRQVRLPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQL 124
            SLRQVR PCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQL
Sbjct: 958  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 1017

Query: 123  LEAALGKGIACVGSTRYATPFSTPSVDVITDQLHRSGYSRW 1
            LEAALGKGIA  G  +YATPFST SVD I +QL   G++RW
Sbjct: 1018 LEAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRW 1058


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score = 1414 bits (3659), Expect = 0.0
 Identities = 698/1001 (69%), Positives = 812/1001 (81%), Gaps = 2/1001 (0%)
 Frame = -3

Query: 2997 LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 2818
            L E  L  FC++AS  FF +YGLISHQI+SYN FI  GIQ++FDS+GEI VEPGYDPSK+
Sbjct: 61   LGESFLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKR 120

Query: 2817 GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDS-KEFLKLMPRHARLQNMTYSSRMKVEMS 2641
            G G+W++A+V FGKVTLE P FW+ EK   D  KE+L L+PRHARLQNMTYS+R+ VE  
Sbjct: 121  GDGDWKHASVKFGKVTLERPKFWAGEKFSVDGGKEYLDLLPRHARLQNMTYSARIMVETH 180

Query: 2640 VQVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDF 2461
            VQVYT+KL++SDKFKTG ++FV K  E EDKRDVLIGRIPVMV S LCWMNG+ K DC+F
Sbjct: 181  VQVYTKKLVRSDKFKTGVDRFVDKEWEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEF 240

Query: 2460 DHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESI 2281
            DHGGYF++KGAEKTFIAQEQ+CLKRLWVS  P W V YR   KR+RVY+KL +    E I
Sbjct: 241  DHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHI 300

Query: 2280 QG-LKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADEN 2104
            +G  K L+V  L+  +P+W+LFF LG+SSDRE++ +IDV+++D  +VNIL+A+I  AD+N
Sbjct: 301  KGGEKALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKN 359

Query: 2103 CEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLL 1924
            CE FRK  K L Y+D L+   KFPP E +++C++ YLFP L   K KA FLGYMVKCLL 
Sbjct: 360  CEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLH 419

Query: 1923 SYTGRRKCENRDDFRNKXXXXXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRPIEH 1744
            S+ GRRK +NRDDFRNK             R HI+HAERRMVKAMQRDLYGDR ++PIEH
Sbjct: 420  SFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEH 479

Query: 1743 YLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTG 1564
            YLDASIITNGLSRAFSTG W HP+KR ER +GVVATLRRTNPLQMTAD+RK+RQQV YTG
Sbjct: 480  YLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTG 539

Query: 1563 KVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLA 1384
            KVGDAR+P+PSHWGKLCFLSTPDGENCGLVKN+A+ GLVST +++P L+ L  CGM+ L 
Sbjct: 540  KVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLV 599

Query: 1383 DDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRI 1204
            DD S TSL G+ KV L+GEWVG+C+ S  FV  LR KRR  ++P +VE+KRD+ QGEVRI
Sbjct: 600  DDCS-TSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 658

Query: 1203 FSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIKYLL 1024
            FSD GRILRPLLVV NLKKI   KGG Y FQS                DC+TAWG++Y+L
Sbjct: 659  FSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYIL 718

Query: 1023 TGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPN 844
              DK+ P   YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFST NPN
Sbjct: 719  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 778

Query: 843  IRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGY 664
             RVDT +HQLYYPQRPLFRTML+D+LG+P+  +    +LP+PEYFNGQ AIVAVNVH GY
Sbjct: 779  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGY 838

Query: 663  NQEDSLVMNQASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVD 484
            NQEDSLVMN+ASLERGMFR+EHVR+YKAEVDNKE    K+LK +D V+FGK QSKIGRVD
Sbjct: 839  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAM-AKKLKIEDSVNFGKTQSKIGRVD 897

Query: 483  SLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVV 304
            SLDDDGFPFIGANLQSGDI+IG+ +ESGADHS+KLKHTERG VQKV+LSANDEG N+AVV
Sbjct: 898  SLDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVV 957

Query: 303  SLRQVRLPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQL 124
            SLRQVR PCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQL
Sbjct: 958  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 1017

Query: 123  LEAALGKGIACVGSTRYATPFSTPSVDVITDQLHRSGYSRW 1
            LEAALGKGIA  G  +YATPFST SVD I +QL   G++RW
Sbjct: 1018 LEAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRW 1058


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score = 1409 bits (3646), Expect = 0.0
 Identities = 687/1006 (68%), Positives = 817/1006 (81%), Gaps = 7/1006 (0%)
 Frame = -3

Query: 2997 LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 2818
            L EE L  FCR+A++ FF+EYGL+SHQI+SYN FI+NG+QK FDS GE  VEPGYDPSKK
Sbjct: 42   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKK 101

Query: 2817 GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSV 2638
            G+GEWRYA++ FG+VTL+ P+F++     +       + PRHARLQNMTYSSRMKV++  
Sbjct: 102  GEGEWRYASMRFGQVTLDKPSFFAGNGGDEHD-----MFPRHARLQNMTYSSRMKVKVQF 156

Query: 2637 QVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFD 2458
            QVYTQK + SDKFKTG+EQ++QK V S++  D++IGRIPVMV+S+LCWM G++KGDCDFD
Sbjct: 157  QVYTQKRVTSDKFKTGREQYIQKEVLSDEATDIIIGRIPVMVKSDLCWMKGVEKGDCDFD 216

Query: 2457 HGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQ 2278
            HGGYF+IKGAEK F+AQEQICLKRLWVS    W+VAY+SE KR R+ ++L+D+   E I+
Sbjct: 217  HGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIK 276

Query: 2277 G-LKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENC 2101
            G  K+L+V FLS  IP+WILFF LG+SSD+EI+ +ID   +D  ++NIL A+I  AD  C
Sbjct: 277  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 336

Query: 2100 EGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLLS 1921
            + FRK    LKY+D L+  T FPPGE  ++CM+ YLFP+LH  K KA FLGYMVKCLL +
Sbjct: 337  DEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQA 396

Query: 1920 YTGRRKCENRDDFRNKXXXXXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRPIEHY 1741
            Y+GRRKC+NRDDFRNK             +VHI HA +RM KA+QRDLYGDR +RPIE+Y
Sbjct: 397  YSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYY 456

Query: 1740 LDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTGK 1561
            LDASI+TNGLSRAFSTGAWSHPFKRTER +G+VA L R NPLQ   DLR+TRQQV YTGK
Sbjct: 457  LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGK 516

Query: 1560 VGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLAD 1381
            VGDAR+P+PSHWGK+CFLSTPDGENCGLVKN+  TGLVST+++EP+ ++L   GME LAD
Sbjct: 517  VGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLAD 576

Query: 1380 DPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRIF 1201
            D S  SL G+ KVF++G+W+G+CK SLSFV  LR KRR K++P +VEIKRD+ Q EVRIF
Sbjct: 577  DASY-SLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIF 635

Query: 1200 SDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIKYLLT 1021
             DAGRILRPLLVVEN+ KI   +G  Y FQ+                DC TAWGIKYLL 
Sbjct: 636  MDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK 695

Query: 1020 GDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPNI 841
              +D+  + +THCELD+SFLLGLSCGIIPFANHDHARRVLYQS+KHS QAIGF TTNP+I
Sbjct: 696  DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 755

Query: 840  RVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGYN 661
            RVDTLSHQL+YPQRPLFRTM+SD LG+P Y  GH  +LP+PE +NGQNAIVAVNVH GYN
Sbjct: 756  RVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIVAVNVHLGYN 813

Query: 660  QEDSLVMNQASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVDS 481
            QEDSLVMN+ASLERGMFR+EH+R+YKAEVDNKE+ + KR  + D V+FGKIQSKIGRVDS
Sbjct: 814  QEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM-QVKRRSSDDMVNFGKIQSKIGRVDS 872

Query: 480  LDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVVS 301
            LDDDGFPFIGANLQ GDIVIG+ A+SGADHSIKLKHTERG VQKVVLS+ND+G N++VVS
Sbjct: 873  LDDDGFPFIGANLQCGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 932

Query: 300  LRQVRLPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLL 121
            LRQVR PCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQLL
Sbjct: 933  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 992

Query: 120  EAALGKGIA------CVGSTRYATPFSTPSVDVITDQLHRSGYSRW 1
            EAALGKGIA      C G  RYATPF+TPSVD IT+QLHR+G+S+W
Sbjct: 993  EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKW 1038


>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1184

 Score = 1406 bits (3639), Expect = 0.0
 Identities = 692/1029 (67%), Positives = 815/1029 (79%), Gaps = 10/1029 (0%)
 Frame = -3

Query: 3057 SSTSKDVNKASTST-ANDDTC--------LSEELLTKFCRQASMEFFSEYGLISHQISSY 2905
            +S     N+A      +DD C        L EE L  FC+QA++ FF EYGLISHQ++SY
Sbjct: 3    ASADAKANRADIDLDVDDDVCDEVLSVQQLGEEFLRGFCKQAAVSFFKEYGLISHQLNSY 62

Query: 2904 NSFIENGIQKLFDSLGEITVEPGYDPSKKGQGEWRYAAVTFGKVTLEPPTFWSTEKPQKD 2725
            N+FI+ G+Q  FDS GE  +  GYDPSKKG+G+WR+A V FGKVT+E PTFW+     + 
Sbjct: 63   NAFIKYGLQNTFDSFGEFLIHSGYDPSKKGEGDWRHARVRFGKVTVERPTFWAVSGGNE- 121

Query: 2724 SKEFLKLMPRHARLQNMTYSSRMKVEMSVQVYTQKLMKSDKFKTGKEQFVQKHVESEDKR 2545
                L ++PRHARLQNMTYSSRMKV + +QVYT K +KSDKFKTG+E+FV++ V  +D R
Sbjct: 122  ----LNMLPRHARLQNMTYSSRMKVNVDLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNR 177

Query: 2544 DVLIGRIPVMVRSNLCWMNGLKKGDCDFDHGGYFLIKGAEKTFIAQEQICLKRLWVSEKP 2365
            D++IGRIPVMVRS+LCWMN ++K DCDFDHGGYFLIKG EK FIAQEQI +KRLW+S   
Sbjct: 178  DIIIGRIPVMVRSDLCWMNEVEKADCDFDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQ 237

Query: 2364 NWSVAYRSELKRRRVYLKLIDLPNNESIQG-LKILNVQFLSMSIPLWILFFYLGMSSDRE 2188
             W++AYRSE+KR R+ ++L++    E I+G  K+L V FLS  IP+W+LFF LG+SSD+E
Sbjct: 238  GWTIAYRSEVKRNRLIIRLVENSKVEYIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKE 297

Query: 2187 IIEMIDVNLDDPILVNILIATIKYADENCEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDC 2008
            ++ +ID   +D  + NIL A+I+ AD  C  F +    + Y+  L+  T+FPP E I++C
Sbjct: 298  VVNLIDYESNDSSITNILFASIRNADGKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEEC 357

Query: 2007 MDKYLFPTLHDLKLKALFLGYMVKCLLLSYTGRRKCENRDDFRNKXXXXXXXXXXXXXRV 1828
            +  YLFPTL   K KA FLGYMVKCLL +YTGR KC+NRDDFRNK             +V
Sbjct: 358  LSTYLFPTLRSFKQKARFLGYMVKCLLQAYTGRLKCDNRDDFRNKRLELAGELLERELKV 417

Query: 1827 HIRHAERRMVKAMQRDLYGDRNLRPIEHYLDASIITNGLSRAFSTGAWSHPFKRTERTAG 1648
            HI HA RRM K +QRDLY DR +RPIEHYLDASI+TNGLSRAFSTGAWSHP+KR ER +G
Sbjct: 418  HIAHARRRMAKTLQRDLYADRTVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISG 477

Query: 1647 VVATLRRTNPLQMTADLRKTRQQVAYTGKVGDARFPNPSHWGKLCFLSTPDGENCGLVKN 1468
            VVA L R NPLQ   DLRKTRQQV YTGKVGDAR+P+PSHWGK+CFLSTPDGENCGLVKN
Sbjct: 478  VVANLGRANPLQTMVDLRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKN 537

Query: 1467 MAATGLVSTNLVEPLLDKLLGCGMENLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVM 1288
            +A TGLVSTN++E ++DKL   GME L +D + +SL G+DKVFLNGEWVG+C+ SLSF  
Sbjct: 538  LATTGLVSTNIMESIVDKLFDSGMEELVND-TCSSLDGKDKVFLNGEWVGVCEDSLSFAA 596

Query: 1287 NLRSKRRSKQIPPEVEIKRDQQQGEVRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQS 1108
             +R KRRSK+ P +VEIKRD+ +GEVRIFSD GRILRPLLVV+NL +I  FKG  Y FQ+
Sbjct: 597  EVRRKRRSKEFPHQVEIKRDEHKGEVRIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQA 656

Query: 1107 XXXXXXXXXXXXXXXXDCKTAWGIKYLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFA 928
                            DC+TAW IKYLLT  + +  V YTHCELD+SFLLGLSCGIIPFA
Sbjct: 657  LLEGGIIELVGTEEEEDCRTAWSIKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFA 716

Query: 927  NHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYP 748
            NHDHARRVLYQ++KHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTM SD LG+  +P
Sbjct: 717  NHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHP 776

Query: 747  RGHTSVLPKPEYFNGQNAIVAVNVHQGYNQEDSLVMNQASLERGMFRTEHVRNYKAEVDN 568
             G   VLPKPE +NGQNAIVAVNVH GYNQEDSLVMN++SLERGMFR+EHVR+YKAEVDN
Sbjct: 777  LGQKGVLPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAEVDN 836

Query: 567  KELFETKRLKTKDRVDFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHS 388
            KE+ + KR K++D V+FGKIQSKIGRVDSLDDDGFP++GANLQ GDIVIGR AESGADHS
Sbjct: 837  KEI-QDKRRKSEDIVNFGKIQSKIGRVDSLDDDGFPYVGANLQCGDIVIGRCAESGADHS 895

Query: 387  IKLKHTERGKVQKVVLSANDEGTNYAVVSLRQVRLPCLGDKFSSMHGQKGVVGLLESQEN 208
            IKLKHTERG VQKVVLS+ND+G NYAVVSLRQVR PCLGDKFSSMHGQKGV+G LESQEN
Sbjct: 896  IKLKHTERGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 955

Query: 207  FPFTREGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQ 28
            FPFT +GIVPDIVINPHAFP+RQTPGQLLEAALGKGIAC GS +YATPFST SVD IT+Q
Sbjct: 956  FPFTTQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTISVDAITEQ 1015

Query: 27   LHRSGYSRW 1
            LHR+G+SRW
Sbjct: 1016 LHRAGFSRW 1024


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1405 bits (3636), Expect = 0.0
 Identities = 695/1001 (69%), Positives = 808/1001 (80%), Gaps = 2/1001 (0%)
 Frame = -3

Query: 2997 LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 2818
            L E  L  FC++AS  FF +YG ISHQI+SYN FI  GIQ++FDS+GEI VEPGYDPSK+
Sbjct: 55   LGESFLKNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKR 114

Query: 2817 GQGEWRYAAVTFGKVTLEPPTFWSTEK-PQKDSKEFLKLMPRHARLQNMTYSSRMKVEMS 2641
            G G+W++A+V FGKVTLE P FW+ EK      KE+L L+PRHARLQNMTYS+R+ VE  
Sbjct: 115  GDGDWKHASVKFGKVTLERPKFWAGEKFSVGGGKEYLDLLPRHARLQNMTYSARIMVETH 174

Query: 2640 VQVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDF 2461
            VQVYT+KL++SDKFKTG ++FV K  E E KRDVLIGRIPVMV S LCWMNG+ K DC+F
Sbjct: 175  VQVYTKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCEF 234

Query: 2460 DHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESI 2281
            DHGGYF+ KGAEKTFIAQEQ+CLKRLWVS  P W V YR   KR+RVY+KL +    E I
Sbjct: 235  DHGGYFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHI 294

Query: 2280 QG-LKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADEN 2104
            +G  K L+V  L+  +P+W+LFF LG+SSDRE++ +IDV+++D  +VNIL+A+I  AD+N
Sbjct: 295  KGGEKALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKN 353

Query: 2103 CEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLL 1924
            CE FRK  K L Y+D L+   KFPP E +++C++ YLFP L   K KA FLGYMVKCLL 
Sbjct: 354  CEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLH 413

Query: 1923 SYTGRRKCENRDDFRNKXXXXXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRPIEH 1744
            S+ GRRK +NRDDFRNK             R HI+HAERRMVKAMQRDLYGDR ++PIEH
Sbjct: 414  SFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEH 473

Query: 1743 YLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTG 1564
            YLDASIITNGLSRAFSTG W HP+KR ER +GVVATLRRTNPLQMTAD+RK+RQQV YTG
Sbjct: 474  YLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTG 533

Query: 1563 KVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLA 1384
            KVGDAR+P+PSHWGKLCFLSTPDGENCGLVKN+A+ GLVST +++P L+ L  CGM+ L 
Sbjct: 534  KVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLV 593

Query: 1383 DDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRI 1204
            DD S TSL G+ KV L+GEWVG+C+ S  FV  LR KRR  ++P +VE+KRD+ QGEVRI
Sbjct: 594  DDCS-TSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRI 652

Query: 1203 FSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIKYLL 1024
            FSD GRILRPLLVV NLKKI   KGG Y FQS                DC+TAWG++Y+L
Sbjct: 653  FSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYIL 712

Query: 1023 TGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPN 844
              DK+ P   YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFST NPN
Sbjct: 713  KADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 772

Query: 843  IRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGY 664
             RVDT +HQLYYPQRPLFRTML+D+LG+P+  +    +LP+PEYFNGQ AIVAVNVH GY
Sbjct: 773  NRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGY 832

Query: 663  NQEDSLVMNQASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVD 484
            NQEDSLVMN+ASLERGMFR+EHVR+YKAEVDNKE    K+LK +D V+FGK QSKIGRVD
Sbjct: 833  NQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAM-AKKLKIEDSVNFGKTQSKIGRVD 891

Query: 483  SLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVV 304
            SLDDDGFPFIGANLQSGDI+IG+ +ESGADHS+KLKHTERG VQKV+LSANDEG N+AVV
Sbjct: 892  SLDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVV 951

Query: 303  SLRQVRLPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQL 124
            SLRQVR PCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQL
Sbjct: 952  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 1011

Query: 123  LEAALGKGIACVGSTRYATPFSTPSVDVITDQLHRSGYSRW 1
            LEAALGKGIA  G  +YATPFST SVD I +QL   G++RW
Sbjct: 1012 LEAALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRW 1052


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score = 1395 bits (3611), Expect = 0.0
 Identities = 692/1000 (69%), Positives = 807/1000 (80%), Gaps = 6/1000 (0%)
 Frame = -3

Query: 2982 LTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKKGQGEW 2803
            L  FC++AS  FF +YG+ISHQI SYN FI  GIQ++FDS+GEI VEPGYDPSKKG+GEW
Sbjct: 64   LRNFCKKASAGFFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPSKKGEGEW 123

Query: 2802 RYAAVTFGKVTLEPPTFWSTEK-PQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSVQVYT 2626
            ++A+V FGKVTL+ P FW+ EK    + +E+L L PRHARLQNMTYS+R+ VE  VQV+T
Sbjct: 124  KHASVKFGKVTLDRPKFWAGEKFSAYNGEEYLDLWPRHARLQNMTYSARIIVETHVQVFT 183

Query: 2625 QKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFDHGGY 2446
            +KL++SDKFKTG EQFV K    EDKRDV IGRIPVMV S LCWM+G  + DCDFDHGGY
Sbjct: 184  KKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCDFDHGGY 243

Query: 2445 FLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQG-LK 2269
            F++KGAEK FIAQEQICLKRLWVS    W VAYRS  KR RVYLKL +   +E I+G  K
Sbjct: 244  FIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIKGEAK 303

Query: 2268 ILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENCEGFR 2089
             L+V FL+  +P+W+LFF LG+SSDREI+++IDV++ D  ++NIL+A+I  AD+NCE FR
Sbjct: 304  ALSVYFLA-EMPIWVLFFALGVSSDREIVDLIDVDIKDTNIINILVASIHDADKNCEDFR 362

Query: 2088 KEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLLSYTGR 1909
            K  K L Y+D L+   KFPP E +++C+ +YLFP L  LK KA FLGYMVKCLLLSY GR
Sbjct: 363  KGKKALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGR 422

Query: 1908 RKCENRDDFRNKXXXXXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRPIEHYLDAS 1729
            RK +NRDDFRNK             R HI+HAERRMVKA+QRDL GDR ++P+EHYLDAS
Sbjct: 423  RKVDNRDDFRNKRLDLAGELLERELRAHIKHAERRMVKALQRDLCGDRQVQPLEHYLDAS 482

Query: 1728 IITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTGKVGDA 1549
            IITNGLSRAFSTG W HP+KR ER +GVVATLRRTNPLQMTADLRKTRQQV YTGKVGDA
Sbjct: 483  IITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDA 542

Query: 1548 RFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLADDPSL 1369
            R+P+PSHWGK+CFLSTPDGENCGLVKN+A+ GLVST +++PLL+ L  CGM+ L DD S 
Sbjct: 543  RYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLKPLLETLFRCGMQKLVDD-SA 601

Query: 1368 TSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRIFSDAG 1189
            TSL G+ KV L+G+WVG+C+ S  FV  LR KRR  ++P +VE+KRD+QQ EVRIFSDAG
Sbjct: 602  TSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRIFSDAG 661

Query: 1188 RILRPLLVVENLKKINM----FKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIKYLLT 1021
            RI+RPLLVV NLK I       KGG Y FQ+                DC+TAWG++YLL 
Sbjct: 662  RIMRPLLVVSNLKNIKSLKDGMKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLLK 721

Query: 1020 GDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPNI 841
             DK+ P V+YTHCELD+SFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIGFST NPN 
Sbjct: 722  ADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNA 781

Query: 840  RVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGYN 661
            RVDT +HQLYYPQRPLF TMLSD+LG+P+  R    +L +PEY+NGQ AIVAVNVH GYN
Sbjct: 782  RVDTNTHQLYYPQRPLFGTMLSDSLGKPKCGRHQKGMLSRPEYYNGQCAIVAVNVHLGYN 841

Query: 660  QEDSLVMNQASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVDS 481
            QEDS+VMN+ASLERGMFR+EHVR+YKAEVDNKE    K+ K +D V+FGK QSKIGRVDS
Sbjct: 842  QEDSVVMNRASLERGMFRSEHVRSYKAEVDNKEAM-GKKSKVEDSVNFGKTQSKIGRVDS 900

Query: 480  LDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVVS 301
            LDDDGFPFIGANLQSGDI+IG+ AESGADHS+K+KHTERG VQKV+LSAND+G N+AVVS
Sbjct: 901  LDDDGFPFIGANLQSGDIIIGKYAESGADHSVKMKHTERGMVQKVLLSANDDGKNFAVVS 960

Query: 300  LRQVRLPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLL 121
            LRQVR PCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQLL
Sbjct: 961  LRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLL 1020

Query: 120  EAALGKGIACVGSTRYATPFSTPSVDVITDQLHRSGYSRW 1
            EAALGKGIA  G  +YATPFS  SVD I  QLH  G+SRW
Sbjct: 1021 EAALGKGIALGGGEKYATPFSALSVDAILKQLHGRGFSRW 1060


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1394 bits (3609), Expect = 0.0
 Identities = 699/1042 (67%), Positives = 819/1042 (78%), Gaps = 9/1042 (0%)
 Frame = -3

Query: 3099 DDNAVTDTAEALNPSSTSKDVNKASTSTANDD--------TCLSEELLTKFCRQASMEFF 2944
            +D   +   E L  +ST  D++  S S ++ D        T + E  L  FC +A+  FF
Sbjct: 12   NDIGTSSKTEKLFKASTDMDIDFDSDSGSDCDFMDSSTSLTDIGEAKLKDFCNKAATLFF 71

Query: 2943 SEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKKGQGEWRYAAVTFGKVTLE 2764
            +EYGLISHQI+SYN FI NGIQK FDS GE+ VEPGYDPSKKG+ EWRYA+V FGKV LE
Sbjct: 72   NEYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDPSKKGENEWRYASVKFGKVALE 131

Query: 2763 PPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSVQVYTQKLMKSDKFKTGKE 2584
             PTFWS     K       ++PRHARLQNMTYSS+MKV +SV+VYT+K+++SDKFKTGK+
Sbjct: 132  KPTFWSGADEHK-------MLPRHARLQNMTYSSKMKVNVSVEVYTRKVVRSDKFKTGKD 184

Query: 2583 QFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFDHGGYFLIKGAEKTFIAQE 2404
            Q+V K V + D R++ IG +PVMV+S+LCWM   +KGDCDFDHGGYFLIKGAEK FIAQE
Sbjct: 185  QYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGDCDFDHGGYFLIKGAEKVFIAQE 244

Query: 2403 QICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQG-LKILNVQFLSMSIPLW 2227
            QICLKRLW+S    W+V+Y+SE+KR R+ ++L+ L   E ++   K L V FLS  IPLW
Sbjct: 245  QICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSALEDVKAEKKCLTVYFLSTEIPLW 304

Query: 2226 ILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENCEGFRKEGKPLKYIDDLMS 2047
            ILFF LG++SD+E+I++I    +D  +VNI  A+I  ADE  EGFR+  + L+Y+   + 
Sbjct: 305  ILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASIHDADEKTEGFRRGKEALEYVVRQIR 364

Query: 2046 QTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLLSYTGRRKCENRDDFRNKXX 1867
             T+FPPGE  +D    YLFPTLH L+ KA FLGYMVKCLL +Y G+RKC N D FRNK  
Sbjct: 365  GTRFPPGEN-EDFFLLYLFPTLHSLRQKARFLGYMVKCLLQAYNGQRKCNNWDSFRNKRF 423

Query: 1866 XXXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRPIEHYLDASIITNGLSRAFSTGA 1687
                       +VHI HA RRM KA+Q+DLYGDR++RPIEHYLDASI+TNGLSRAFSTGA
Sbjct: 424  ELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIEHYLDASIVTNGLSRAFSTGA 483

Query: 1686 WSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTGKVGDARFPNPSHWGKLCFL 1507
            WSHP+KR ER +GVVA L R NPLQ   DLRKTR  V YTGKVGDARFP+PSHWG++CFL
Sbjct: 484  WSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYHVQYTGKVGDARFPHPSHWGRVCFL 543

Query: 1506 STPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLADDPSLTSLKGRDKVFLNGE 1327
            STPDGENCGLVKN+A TGLVS N++EPL+DKL+  GME + +D S + L  +DKVFLNGE
Sbjct: 544  STPDGENCGLVKNLATTGLVSVNILEPLIDKLIARGMEKVPED-SHSDLDEKDKVFLNGE 602

Query: 1326 WVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRIFSDAGRILRPLLVVENLKK 1147
            WVG+C+ S  FV  LR  RR K++P +VEIKRD+QQ EVRIFSDAGRILRPLLVV+NL K
Sbjct: 603  WVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDAGRILRPLLVVQNLHK 662

Query: 1146 INMFKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIKYLLTGDKDQPSVDYTHCELDLS 967
            I  FKGG   FQS                DC TAWGIK+LL+G   + S+ YTHCELD+S
Sbjct: 663  IEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVDGKQSLKYTHCELDMS 722

Query: 966  FLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFR 787
            FLLGLSCGIIPFANHDHARRVLYQ++KHSQQAIGF TTNPNIRVDTLSHQLYYPQRPLFR
Sbjct: 723  FLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPNIRVDTLSHQLYYPQRPLFR 782

Query: 786  TMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGYNQEDSLVMNQASLERGMFR 607
            T+ SD LG+P   RGH  ++PKPE +NGQNAIVAVNVH GYNQEDSLVMN+ASLERGMFR
Sbjct: 783  TVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFR 842

Query: 606  TEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVDSLDDDGFPFIGANLQSGDI 427
            +EH+R+YKA+VDNKEL + KR K  D V+FGKI SKIGRVDSLDDDGFPFIGANLQSGDI
Sbjct: 843  SEHIRSYKADVDNKELLD-KRRKYDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGDI 901

Query: 426  VIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVVSLRQVRLPCLGDKFSSMHG 247
            VIGR AESG DHSIKLKHTERG VQKVVLS+NDEG N+AVVSLRQVR PCLGDKFSSMHG
Sbjct: 902  VIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHG 961

Query: 246  QKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACVGSTRYAT 67
            QKGV+G LESQENFPFTR+GIVPDIVINPH+FP+RQTPGQLLEAALGKGIAC GS +YAT
Sbjct: 962  QKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYAT 1021

Query: 66   PFSTPSVDVITDQLHRSGYSRW 1
            PFST SV+ IT+QLHR+G+SRW
Sbjct: 1022 PFSTLSVEAITNQLHRAGFSRW 1043


>ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508782082|gb|EOY29338.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 1073

 Score = 1392 bits (3604), Expect = 0.0
 Identities = 687/1022 (67%), Positives = 808/1022 (79%), Gaps = 10/1022 (0%)
 Frame = -3

Query: 3057 SSTSKDVNKASTST-ANDDTC--------LSEELLTKFCRQASMEFFSEYGLISHQISSY 2905
            +S     N+A      +DD C        L EE L  FC+QA++ FF EYGLISHQ++SY
Sbjct: 3    ASADAKANRADIDLDVDDDVCDEVLSVQQLGEEFLRGFCKQAAVSFFKEYGLISHQLNSY 62

Query: 2904 NSFIENGIQKLFDSLGEITVEPGYDPSKKGQGEWRYAAVTFGKVTLEPPTFWSTEKPQKD 2725
            N+FI+ G+Q  FDS GE  +  GYDPSKKG+G+WR+A V FGKVT+E PTFW+     + 
Sbjct: 63   NAFIKYGLQNTFDSFGEFLIHSGYDPSKKGEGDWRHARVRFGKVTVERPTFWAVSGGNE- 121

Query: 2724 SKEFLKLMPRHARLQNMTYSSRMKVEMSVQVYTQKLMKSDKFKTGKEQFVQKHVESEDKR 2545
                L ++PRHARLQNMTYSSRMKV + +QVYT K +KSDKFKTG+E+FV++ V  +D R
Sbjct: 122  ----LNMLPRHARLQNMTYSSRMKVNVDLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNR 177

Query: 2544 DVLIGRIPVMVRSNLCWMNGLKKGDCDFDHGGYFLIKGAEKTFIAQEQICLKRLWVSEKP 2365
            D++IGRIPVMVRS+LCWMN ++K DCDFDHGGYFLIKG EK FIAQEQI +KRLW+S   
Sbjct: 178  DIIIGRIPVMVRSDLCWMNEVEKADCDFDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQ 237

Query: 2364 NWSVAYRSELKRRRVYLKLIDLPNNESIQG-LKILNVQFLSMSIPLWILFFYLGMSSDRE 2188
             W++AYRSE+KR R+ ++L++    E I+G  K+L V FLS  IP+W+LFF LG+SSD+E
Sbjct: 238  GWTIAYRSEVKRNRLIIRLVENSKVEYIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKE 297

Query: 2187 IIEMIDVNLDDPILVNILIATIKYADENCEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDC 2008
            ++ +ID   +D  + NIL A+I+ AD  C  F +    + Y+  L+  T+FPP E I++C
Sbjct: 298  VVNLIDYESNDSSITNILFASIRNADGKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEEC 357

Query: 2007 MDKYLFPTLHDLKLKALFLGYMVKCLLLSYTGRRKCENRDDFRNKXXXXXXXXXXXXXRV 1828
            +  YLFPTL   K KA FLGYMVKCLL +YTGR KC+NRDDFRNK             +V
Sbjct: 358  LSTYLFPTLRSFKQKARFLGYMVKCLLQAYTGRLKCDNRDDFRNKRLELAGELLERELKV 417

Query: 1827 HIRHAERRMVKAMQRDLYGDRNLRPIEHYLDASIITNGLSRAFSTGAWSHPFKRTERTAG 1648
            HI HA RRM K +QRDLY DR +RPIEHYLDASI+TNGLSRAFSTGAWSHP+KR ER +G
Sbjct: 418  HIAHARRRMAKTLQRDLYADRTVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISG 477

Query: 1647 VVATLRRTNPLQMTADLRKTRQQVAYTGKVGDARFPNPSHWGKLCFLSTPDGENCGLVKN 1468
            VVA L R NPLQ   DLRKTRQQV YTGKVGDAR+P+PSHWGK+CFLSTPDGENCGLVKN
Sbjct: 478  VVANLGRANPLQTMVDLRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKN 537

Query: 1467 MAATGLVSTNLVEPLLDKLLGCGMENLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVM 1288
            +A TGLVSTN++E ++DKL   GME L +D + +SL G+DKVFLNGEWVG+C+ SLSF  
Sbjct: 538  LATTGLVSTNIMESIVDKLFDSGMEELVND-TCSSLDGKDKVFLNGEWVGVCEDSLSFAA 596

Query: 1287 NLRSKRRSKQIPPEVEIKRDQQQGEVRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQS 1108
             +R KRRSK+ P +VEIKRD+ +GEVRIFSD GRILRPLLVV+NL +I  FKG  Y FQ+
Sbjct: 597  EVRRKRRSKEFPHQVEIKRDEHKGEVRIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQA 656

Query: 1107 XXXXXXXXXXXXXXXXDCKTAWGIKYLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFA 928
                            DC+TAW IKYLLT  + +  V YTHCELD+SFLLGLSCGIIPFA
Sbjct: 657  LLEGGIIELVGTEEEEDCRTAWSIKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFA 716

Query: 927  NHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYP 748
            NHDHARRVLYQ++KHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTM SD LG+  +P
Sbjct: 717  NHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHP 776

Query: 747  RGHTSVLPKPEYFNGQNAIVAVNVHQGYNQEDSLVMNQASLERGMFRTEHVRNYKAEVDN 568
             G   VLPKPE +NGQNAIVAVNVH GYNQEDSLVMN++SLERGMFR+EHVR+YKAEVDN
Sbjct: 777  LGQKGVLPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAEVDN 836

Query: 567  KELFETKRLKTKDRVDFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHS 388
            KE+ + KR K++D V+FGKIQSKIGRVDSLDDDGFP++GANLQ GDIVIGR AESGADHS
Sbjct: 837  KEI-QDKRRKSEDIVNFGKIQSKIGRVDSLDDDGFPYVGANLQCGDIVIGRCAESGADHS 895

Query: 387  IKLKHTERGKVQKVVLSANDEGTNYAVVSLRQVRLPCLGDKFSSMHGQKGVVGLLESQEN 208
            IKLKHTERG VQKVVLS+ND+G NYAVVSLRQVR PCLGDKFSSMHGQKGV+G LESQEN
Sbjct: 896  IKLKHTERGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 955

Query: 207  FPFTREGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQ 28
            FPFT +GIVPDIVINPHAFP+RQTPGQLLEAALGKGIAC GS +YATPFST SVD IT+Q
Sbjct: 956  FPFTTQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTISVDAITEQ 1015

Query: 27   LH 22
            LH
Sbjct: 1016 LH 1017


>ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
            gi|462422378|gb|EMJ26641.1| hypothetical protein
            PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score = 1388 bits (3593), Expect = 0.0
 Identities = 681/1004 (67%), Positives = 815/1004 (81%), Gaps = 5/1004 (0%)
 Frame = -3

Query: 2997 LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 2818
            L E  L  FC++A++ FF+EYGLISHQI+SYN FI+NGIQ++FDS GEI VEPGYDPSKK
Sbjct: 46   LGEGFLKFFCKEAAIAFFNEYGLISHQINSYNDFIKNGIQRVFDSFGEIIVEPGYDPSKK 105

Query: 2817 GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSV 2638
            G+ EWRYA+V FGKVTL  P+FW       D KE+ K++PRHARLQNM+Y+S+MKV ++V
Sbjct: 106  GESEWRYASVKFGKVTLGMPSFWGGSD---DEKEY-KMLPRHARLQNMSYASKMKVNITV 161

Query: 2637 QVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFD 2458
            +VYTQKL+ SDKFKTGK Q++ K + S D RD++IG +PVMV+S+LCWM   +KGDCDFD
Sbjct: 162  EVYTQKLVSSDKFKTGKSQYLDKQILSTDTRDIIIGSVPVMVKSDLCWMKDFEKGDCDFD 221

Query: 2457 HGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQ 2278
            HGGYF+IKGAEKTFIAQEQ CLKRL ++     +VAYRSE+KR R+ ++L+ +   E+I+
Sbjct: 222  HGGYFIIKGAEKTFIAQEQSCLKRLLITNNQGLTVAYRSEVKRHRLIIRLVGISKLENIE 281

Query: 2277 GL-KILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENC 2101
            G+ K+L V F+S  IP+WI FF LG+SSDRE++ +ID + +D  + NIL A+I+ AD+  
Sbjct: 282  GVEKVLTVYFMSTEIPVWIWFFALGVSSDREVMNLIDYDSEDASISNILFASIRDADKLN 341

Query: 2100 E----GFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKC 1933
            +    GFR+    LKY+D+++ +T FPPGE +++C+  YLFP L  LK KA FLGYMVK 
Sbjct: 342  DKVDGGFRRGKNALKYVDEVIRKTAFPPGESMEECISLYLFPNLKGLKQKARFLGYMVKS 401

Query: 1932 LLLSYTGRRKCENRDDFRNKXXXXXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRP 1753
            LL +Y GRRKC+NRDDFRNK             + HI HA RRM KA+QRDLYGDR +RP
Sbjct: 402  LLQAYAGRRKCDNRDDFRNKRLDLAGELLERELKAHIGHARRRMAKALQRDLYGDRAVRP 461

Query: 1752 IEHYLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVA 1573
            IEHYLDASI+TNG+SRAFSTGAW HPFKR ER +GVVAT+ R NPLQ   D+RKTRQQV 
Sbjct: 462  IEHYLDASIVTNGISRAFSTGAWCHPFKRMERMSGVVATVGRANPLQTMVDMRKTRQQVQ 521

Query: 1572 YTGKVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGME 1393
            YTGKVGDAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLVSTN++E L+ +LL CGME
Sbjct: 522  YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNVLESLIPQLLTCGME 581

Query: 1392 NLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGE 1213
             L DD + TSL+G+DKVFLNG+WVG+C+ SLSFV+ LR  RR K++P +VEIKRD  QGE
Sbjct: 582  KLVDD-TFTSLRGKDKVFLNGDWVGVCEDSLSFVLELRRMRRRKKLPHQVEIKRDVHQGE 640

Query: 1212 VRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIK 1033
            VRIFSDAGRILRPLLVVENL K+   KGG   FQ                 DC TAWGIK
Sbjct: 641  VRIFSDAGRILRPLLVVENLNKVKASKGGKSSFQYFLDNGIIELIGAEEEEDCSTAWGIK 700

Query: 1032 YLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTT 853
            YL   DK + +  +THCELD+SFLLGLSCGIIP+ANHDHARRVLYQ++KHSQQAIGFSTT
Sbjct: 701  YLFMEDKGKSATKFTHCELDMSFLLGLSCGIIPYANHDHARRVLYQAQKHSQQAIGFSTT 760

Query: 852  NPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVH 673
            NPN+RVDTLSHQL+YPQRPLF+TM SD LG+   P  H  ++PKPEY+NGQNAIVAVNVH
Sbjct: 761  NPNLRVDTLSHQLHYPQRPLFQTMTSDCLGK---PGRHNRIVPKPEYYNGQNAIVAVNVH 817

Query: 672  QGYNQEDSLVMNQASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIG 493
             G+NQEDS+VMN+ASLERGMFR+EH+R+YKAEVDNKE  + KR K  D V+FGK+QSK G
Sbjct: 818  LGFNQEDSIVMNRASLERGMFRSEHIRSYKAEVDNKESLD-KRRKPDDCVNFGKMQSKFG 876

Query: 492  RVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNY 313
            RVDSLDDDGFP++GANLQSGDI+IGR +ESGADHSIKLKHTERG VQKV+LS+ND+G N+
Sbjct: 877  RVDSLDDDGFPYVGANLQSGDIIIGRCSESGADHSIKLKHTERGMVQKVLLSSNDDGKNF 936

Query: 312  AVVSLRQVRLPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTP 133
            AVVSLRQVR PCLGDKFSSMHGQKGV+G LESQENFPFT +G+VPDIVINPHAFP+RQTP
Sbjct: 937  AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTP 996

Query: 132  GQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQLHRSGYSRW 1
            GQLLEAALGKGIAC GS RYATPFST SVD ITDQLH +G+SRW
Sbjct: 997  GQLLEAALGKGIACGGSKRYATPFSTLSVDDITDQLHSAGFSRW 1040


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
            lycopersicum]
          Length = 1219

 Score = 1381 bits (3575), Expect = 0.0
 Identities = 686/1000 (68%), Positives = 801/1000 (80%), Gaps = 6/1000 (0%)
 Frame = -3

Query: 2982 LTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKKGQGEW 2803
            L  FC++AS  FF +YGLISHQI SYN FI  GIQK+FDS+GEI VEPGYDPSKKG+GEW
Sbjct: 64   LRNFCKKASAGFFEKYGLISHQIDSYNDFIRYGIQKVFDSVGEIHVEPGYDPSKKGEGEW 123

Query: 2802 RYAAVTFGKVTLEPPTFWSTEKPQK-DSKEFLKLMPRHARLQNMTYSSRMKVEMSVQVYT 2626
            ++A+V FG V L+ P FW+ EK    + +E+L + PRHARLQNMTYS+R+ VE  VQV+T
Sbjct: 124  KHASVKFGNVILDRPKFWAGEKYSAYNGEEYLNMWPRHARLQNMTYSARIIVETHVQVFT 183

Query: 2625 QKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFDHGGY 2446
            +KL++SDKFKTG EQFV K    EDKRDV IGRIPVMV S LCWM+G  + DC+FDHGGY
Sbjct: 184  KKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRLDCEFDHGGY 243

Query: 2445 FLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQG-LK 2269
            F++KGAEK FIAQEQ+CLKRLWVS    W VAYRS  KR RVYLKL +   +E I+G  K
Sbjct: 244  FIVKGAEKIFIAQEQMCLKRLWVSNHYTWMVAYRSGEKRNRVYLKLTETLKHEQIKGEAK 303

Query: 2268 ILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENCEGFR 2089
             L+V FL+  +P+W+LFF LG+SSDRE++++IDV++ D  ++NIL+A+I  AD+NCE FR
Sbjct: 304  SLSVYFLA-EMPIWVLFFALGVSSDREVVDLIDVDIKDNKIINILVASIHDADKNCEDFR 362

Query: 2088 KEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLLSYTGR 1909
            K  + L Y+D L+   KFPP E +++C+ +YLFP L  LK KA FLGYMVKCLLLSY GR
Sbjct: 363  KGKRALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGR 422

Query: 1908 RKCENRDDFRNKXXXXXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRPIEHYLDAS 1729
            RK +NRDDFRNK             RVHI+HAERRMVKA+QRDL GDR + PIEHYLDAS
Sbjct: 423  RKVDNRDDFRNKRLDLAGELLERELRVHIKHAERRMVKALQRDLCGDRQVHPIEHYLDAS 482

Query: 1728 IITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTGKVGDA 1549
            IITNGLSRAFSTG W HP+KR ER +GVVATLRRTNPLQMTADLRKTRQQV YTGKVGDA
Sbjct: 483  IITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDA 542

Query: 1548 RFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLADDPSL 1369
            R+PNPSHWGK+CFLSTPDGENCGLVKN+A+ GLVST ++ PLL+ L  CGM+ L DD   
Sbjct: 543  RYPNPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLMPLLETLFRCGMQKLVDD-CA 601

Query: 1368 TSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRIFSDAG 1189
            TSL G+ KV L+G+WVG+C+ S  FV  LR KRR  ++P +VE+KRD+QQ EVRIFSDAG
Sbjct: 602  TSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRIFSDAG 661

Query: 1188 RILRPLLVVENLKKINMF----KGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIKYLLT 1021
            RI+RPLLVV NLK I       KGG Y FQ+                DC+TAWG++YLL 
Sbjct: 662  RIMRPLLVVSNLKNIKALNGGVKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLLK 721

Query: 1020 GDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPNI 841
             DK+ P V+YTHCELD+SFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIGFST NPNI
Sbjct: 722  ADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNI 781

Query: 840  RVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGYN 661
            RVDT +HQLYYPQRPLF TMLSD+LG+P+  R    +L +PEY+NGQ AIVAVNVH GYN
Sbjct: 782  RVDTNTHQLYYPQRPLFGTMLSDSLGKPKCARHQRGMLSRPEYYNGQCAIVAVNVHLGYN 841

Query: 660  QEDSLVMNQASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVDS 481
            QEDS+VMN+ASLERGMFR+EHVR+YKAEVDN E    K+ K +D V+FGK QSKIGRVD 
Sbjct: 842  QEDSVVMNRASLERGMFRSEHVRSYKAEVDNMEA-TGKKSKAEDSVNFGKTQSKIGRVDC 900

Query: 480  LDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVVS 301
            LDDDG P+IGANLQSGDI+IG+ AESGADHS+K+KHTE+G VQKV+LSANDEG N+AVVS
Sbjct: 901  LDDDGLPYIGANLQSGDIIIGKFAESGADHSVKMKHTEKGMVQKVLLSANDEGKNFAVVS 960

Query: 300  LRQVRLPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLL 121
            LRQVR PCLGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQLL
Sbjct: 961  LRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLL 1020

Query: 120  EAALGKGIACVGSTRYATPFSTPSVDVITDQLHRSGYSRW 1
            EAALGKGIA  G  +YATPFS  SVD I  QLH  G+SRW
Sbjct: 1021 EAALGKGIALGGGEKYATPFSALSVDAILKQLHGRGFSRW 1060


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score = 1370 bits (3545), Expect = 0.0
 Identities = 688/1036 (66%), Positives = 814/1036 (78%), Gaps = 6/1036 (0%)
 Frame = -3

Query: 3090 AVTDTAEALNPSSTSK--DVNKASTSTANDDTCLSE---ELLTKFCRQASMEFFSEYGLI 2926
            A +D  E + PSS  +  D++        D T L+E   E L  FC++A+  FF EYGLI
Sbjct: 3    ASSDYMEDVGPSSKGEVDDMDMDMDEDLMDTTNLNELGKETLQSFCKKAASLFFDEYGLI 62

Query: 2925 SHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKKGQGEWRYAAVTFGKVTLEPPTFWS 2746
            SHQI+SYN+FI +G+Q++FDS GE+ VEPGYD SK+  GEWR A+V FGKVTL+ P+FW 
Sbjct: 63   SHQINSYNAFINSGLQRVFDSFGEVAVEPGYDSSKQKDGEWRRASVRFGKVTLDRPSFWG 122

Query: 2745 TEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSVQVYTQKLMKSDKFKTGKEQFVQKH 2566
                  +   F    PRHARLQNMTYS+RMK+ ++VQVYTQ + +SDKFKTG ++ VQK+
Sbjct: 123  GTSSDAEHNMF----PRHARLQNMTYSARMKIHVNVQVYTQTVGRSDKFKTGIDKVVQKN 178

Query: 2565 VESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFDHGGYFLIKGAEKTFIAQEQICLKR 2386
            V   + R+++IGRIPVMV+S+LCW+  ++KGDCDFDHGGYFLIKGAEK FIAQEQIC+KR
Sbjct: 179  VVHTENREIIIGRIPVMVKSDLCWLTTVEKGDCDFDHGGYFLIKGAEKVFIAQEQICMKR 238

Query: 2385 LWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQGLKI-LNVQFLSMSIPLWILFFYL 2209
            LW+S    W+V+Y+SE+KR R+ ++L++L   E I+G K  L V FLS  IPLWILFF L
Sbjct: 239  LWISNSQGWTVSYKSEVKRNRLIVRLVELSKLEYIKGEKKGLCVYFLSTEIPLWILFFAL 298

Query: 2208 GMSSDREIIEMIDVNLDDPILVNILIATIKYADENCEGFRKEGKPLKYIDDLMSQTKFPP 2029
            G+ SD+E+I++ID   +D  +VNI  A+I  ADE CE FR+E + L Y+D L+ +T+FPP
Sbjct: 299  GVRSDKEVIDLIDYASNDASIVNIFFASIHDADEKCEHFRREDRALDYVDKLLKKTRFPP 358

Query: 2028 GEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLLSYTGRRKCENRDDFRNKXXXXXXXX 1849
             E I+D +  YLFP L+  + KA FLGYMVKCLL +YTG RKC+NRD FRNK        
Sbjct: 359  KESIEDAISAYLFPRLNSRRHKARFLGYMVKCLLEAYTGHRKCDNRDSFRNKRFELASEL 418

Query: 1848 XXXXXRVHIRHAERRMVKAMQRDLYGDRNLRPIEHYLDASIITNGLSRAFSTGAWSHPFK 1669
                 +VH+ HA RRM KA+QRDLYGDR++ PIEHYLDASI+TNGL+RAFSTGAW HPFK
Sbjct: 419  LERELKVHVSHALRRMTKALQRDLYGDRDVHPIEHYLDASIVTNGLTRAFSTGAWCHPFK 478

Query: 1668 RTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTGKVGDARFPNPSHWGKLCFLSTPDGE 1489
              ER +GVV  L R NPLQ   DLRKTRQQV YTGKVGDAR+P+PSHWG++CFLSTPDGE
Sbjct: 479  WMERVSGVVGNLGRANPLQTMIDLRKTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGE 538

Query: 1488 NCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLADDPSLTSLKGRDKVFLNGEWVGICK 1309
            NCGLVKN+A TG+VSTN+ E L+DKL   GME L DD + T L G+ KVFLNGEWVG+C+
Sbjct: 539  NCGLVKNLAVTGVVSTNISESLVDKLFDSGMEKLVDD-TYTKLDGKHKVFLNGEWVGVCE 597

Query: 1308 GSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRIFSDAGRILRPLLVVENLKKINMFKG 1129
             S  FV  LRS RR +++P +VEIKRD+QQ EVRIFSDAGRILRPLLVVENL KI  FKG
Sbjct: 598  DSCLFVGELRSMRRRRELPYQVEIKRDEQQREVRIFSDAGRILRPLLVVENLDKIKAFKG 657

Query: 1128 GGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIKYLLTGDKDQPSVDYTHCELDLSFLLGLS 949
            G Y+F S                DC TAWGIK+LL   + +  + Y+HCELD+SFLLGLS
Sbjct: 658  GNYIFTSLLDKGIIEFIGTEEEEDCCTAWGIKFLLADIEGKQPMKYSHCELDMSFLLGLS 717

Query: 948  CGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMLSDN 769
            CGIIPFANHDHARRVLYQ++KHSQQAIGFSTTNPNIRVDTLSHQL+YPQRPLFRTM+SD 
Sbjct: 718  CGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLHYPQRPLFRTMISDC 777

Query: 768  LGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGYNQEDSLVMNQASLERGMFRTEHVRN 589
            L           VLPKPE FNGQNAIVAVNVH GYNQEDSLVMN+ASLERGMFR+EH+R+
Sbjct: 778  L-----------VLPKPELFNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 826

Query: 588  YKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGRRA 409
            YKAEVDNKEL + KR K++D + FGKIQSKIGRVDSLDDDGFPFIGAN+QSGDIVIG+ A
Sbjct: 827  YKAEVDNKELTD-KRRKSEDSITFGKIQSKIGRVDSLDDDGFPFIGANMQSGDIVIGKCA 885

Query: 408  ESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVVSLRQVRLPCLGDKFSSMHGQKGVVG 229
            ESGADHS+KLKHTERG VQKVVLS+NDEG N+AVVSLRQVR PCLGDKFSSMHGQKGV+G
Sbjct: 886  ESGADHSVKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLG 945

Query: 228  LLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACVGSTRYATPFSTPS 49
             LESQENFPFT +G+VPDIVINPHAFP+RQTPGQLLEAALGKGIAC GS RYATPFST S
Sbjct: 946  FLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLS 1005

Query: 48   VDVITDQLHRSGYSRW 1
            VD I DQLHR+ +SRW
Sbjct: 1006 VDDIIDQLHRAKFSRW 1021


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1357 bits (3512), Expect = 0.0
 Identities = 678/1041 (65%), Positives = 811/1041 (77%), Gaps = 8/1041 (0%)
 Frame = -3

Query: 3099 DDNAVTDTAEALNPS---STSKDVNKASTSTANDDTCLSEELLTKFCRQASMEFFSEYGL 2929
            DD  +    E L+P     T  D +  S      D  L E  L  FC+++SM FF++YGL
Sbjct: 8    DDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHD--LGEAFLKDFCKKSSMAFFNQYGL 65

Query: 2928 ISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKKGQGEWRYAAVTFGKVTLEPPTFW 2749
            ISHQI+SYN FI+NGIQK FD  G+I V+PGYDPSKKG GEWRYA V FGKVTL+ P FW
Sbjct: 66   ISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYATVKFGKVTLDKPKFW 125

Query: 2748 STEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSVQVYTQKLMKSDKFKTGKEQFVQK 2569
                  K+      ++PRHARLQNMTYSSRMK+ +S+++YTQKL+ SDKFKTGK+Q+V K
Sbjct: 126  GGAASGKE----YNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDK 181

Query: 2568 H-VE-SEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFDHGGYFLIKGAEKTFIAQEQIC 2395
              VE + D RDV IGR+PVMV S+LCWM   +K DC+FD GGYFLIKGAEK FIAQEQIC
Sbjct: 182  EPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRDCEFDRGGYFLIKGAEKIFIAQEQIC 241

Query: 2394 LKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQGL-KILNVQFLSMSIPLWILF 2218
            L+RLW+S    W+VAYRSE+KR R+ ++L++   +E ++   K+LNV FLS  +P+WILF
Sbjct: 242  LRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWILF 301

Query: 2217 FYLGMSSDREIIEMIDVNLDDPILVNILIATIKYAD--ENCEGFRKEGKPLKYIDDLMSQ 2044
            F LG+SSD+EI+++ID   DDP ++NIL A+++  D  +  + FR+  + L ++D+ + +
Sbjct: 302  FALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRK 361

Query: 2043 TKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLLSYTGRRKCENRDDFRNKXXX 1864
            T FPP + I+DC++ YLF +L   K K  FLGYMVKCLL +YTGRRKC+NRDDFRNK   
Sbjct: 362  TSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFE 421

Query: 1863 XXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRPIEHYLDASIITNGLSRAFSTGAW 1684
                      +VHI HA RRM KA+QRDLYGDR + PIEHYLDASIITNGLSRAFSTGAW
Sbjct: 422  LAAELLERELKVHIAHARRRMEKALQRDLYGDRQVHPIEHYLDASIITNGLSRAFSTGAW 481

Query: 1683 SHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTGKVGDARFPNPSHWGKLCFLS 1504
            +H FKR ER +GVVATL R NPLQ  A+LR+TRQQVAYTGKVGDAR+P+PSHWG++CFLS
Sbjct: 482  AHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLS 541

Query: 1503 TPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLADDPSLTSLKGRDKVFLNGEW 1324
            TPDGENCGL+KN++ TGLVS N  + +   L  CGMENL D+ S TS  G+ ++FL+GEW
Sbjct: 542  TPDGENCGLIKNLSGTGLVSLNTKKSITPTLFRCGMENLVDNTS-TSFCGKYRIFLDGEW 600

Query: 1323 VGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRIFSDAGRILRPLLVVENLKKI 1144
            VG+C+ SLSFV N+R KRR      +VE+KRD+Q  EVRIFSDAGRILRPLLVVENL +I
Sbjct: 601  VGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660

Query: 1143 NMFKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIKYLLTGDKDQPSVDYTHCELDLSF 964
            +  KG  Y FQS                DC+ AW IK+L+   +D+ +  Y+HCELD+SF
Sbjct: 661  DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLM---EDEGTTKYSHCELDMSF 717

Query: 963  LLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRT 784
            LLGLSCG++PFANHDHARR L+QS+KHS QAIGFS TN N RVDTLSHQL+YPQRPLFRT
Sbjct: 718  LLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSPTNSNFRVDTLSHQLHYPQRPLFRT 777

Query: 783  MLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGYNQEDSLVMNQASLERGMFRT 604
            M +D LG P Y   H  +LPKPE++NGQNAIVAVNVH GYNQEDSLVMN+ASLERGMFR+
Sbjct: 778  MTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 837

Query: 603  EHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIV 424
            EH+R+YKAEVDNKE  E KR K+ D ++FGK QSKIGRVDSLDDDGFP+IGANLQSGDIV
Sbjct: 838  EHIRSYKAEVDNKESSE-KRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIV 896

Query: 423  IGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVVSLRQVRLPCLGDKFSSMHGQ 244
            IGR AESGADHSIKLKHTE+G VQKVVLS+ND+G NYAVVSLRQVR PCLGDKFSSMHGQ
Sbjct: 897  IGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQ 956

Query: 243  KGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACVGSTRYATP 64
            KGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQLLEAALGKGIA  GS +YATP
Sbjct: 957  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATP 1016

Query: 63   FSTPSVDVITDQLHRSGYSRW 1
            FSTPSVD ITDQLHR+G+SRW
Sbjct: 1017 FSTPSVDAITDQLHRAGFSRW 1037


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score = 1354 bits (3505), Expect = 0.0
 Identities = 662/1000 (66%), Positives = 792/1000 (79%), Gaps = 1/1000 (0%)
 Frame = -3

Query: 2997 LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 2818
            L E  L +FC++AS+ FF EYGL+SHQI+SYN F+ENGIQ++FDS GEI VEP +DPSKK
Sbjct: 49   LGEVFLDEFCKEASVSFFKEYGLLSHQINSYNDFVENGIQRVFDSFGEIVVEPNFDPSKK 108

Query: 2817 GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSV 2638
            G  +WR+AA+ FGKVTL  P FW       DS +   ++PRHARLQNMTYS+RM V ++V
Sbjct: 109  GNADWRFAAIKFGKVTLSKPCFWGGS----DSDKEYNMLPRHARLQNMTYSARMSVNITV 164

Query: 2637 QVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFD 2458
            QVYTQ L++SDKFKTG EQ ++K   S D RD++IGRIPVMV+SNLCWM G++KGDC+FD
Sbjct: 165  QVYTQNLVESDKFKTGTEQLLEKTTLSTDSRDIIIGRIPVMVKSNLCWMKGVEKGDCEFD 224

Query: 2457 HGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQ 2278
             GGYF+I GAEKTFIAQEQ CLKRL ++     +VAYRSE+KR R+ ++L  +   E+++
Sbjct: 225  QGGYFIINGAEKTFIAQEQSCLKRLLITNSQGLTVAYRSEVKRHRLIIRLSGISKLENVE 284

Query: 2277 GL-KILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENC 2101
            G+ K+L+V F+S  IP+WI FF LG+SSD+E+I++ID  ++D  + NIL A+I+ ADE  
Sbjct: 285  GVEKVLSVYFMSTEIPVWIWFFALGVSSDKEVIDLIDYGIEDASISNILFASIRDADERK 344

Query: 2100 EGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLLS 1921
            + FR+    L+Y+++ +  T FPPGE ++DC+  YLFP +  LK KA FLGYMVKCLL +
Sbjct: 345  DDFRRGNNALRYVENAIKSTTFPPGESVEDCISMYLFPNMRGLKQKARFLGYMVKCLLQT 404

Query: 1920 YTGRRKCENRDDFRNKXXXXXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRPIEHY 1741
              G RKC+NRDDFRNK             + H+ HA R+M KA+QRDL GD  +RP+EHY
Sbjct: 405  SIGLRKCDNRDDFRNKRLELAGELLERELKAHVSHARRKMAKALQRDLGGDHVVRPVEHY 464

Query: 1740 LDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTGK 1561
            LDASI+TNG+SRAFSTGAW HPFKR ER +GVVA + R NPLQ   D+RKTRQQV YTGK
Sbjct: 465  LDASIVTNGVSRAFSTGAWCHPFKRMERISGVVANIGRANPLQTMIDMRKTRQQVQYTGK 524

Query: 1560 VGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLAD 1381
             GDAR+P+PSHWGK+CFLSTPDGENCGLVKN+A T LVS N+ EP+L KL  CG+E L D
Sbjct: 525  AGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTALVSINISEPILPKLFKCGIEELVD 584

Query: 1380 DPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRIF 1201
            D + TSL G+ KVFLNG+WVGIC  S  FV  LR  RRSK++P +VEIKRD+ +GEVRIF
Sbjct: 585  D-TYTSLAGKHKVFLNGDWVGICVDSHGFVTKLRRLRRSKKLPHQVEIKRDEHKGEVRIF 643

Query: 1200 SDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIKYLLT 1021
            SDAGRILRPLLVV+ LKKI   KG  + FQ                 DC+TAW IKYL  
Sbjct: 644  SDAGRILRPLLVVQGLKKIKAAKGEKHTFQDFLDKGIIEFIGAEEEEDCRTAWAIKYLFM 703

Query: 1020 GDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPNI 841
             ++    V YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQS+KHSQQAIG+STTNPN+
Sbjct: 704  -EEQGSVVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSQQAIGYSTTNPNL 762

Query: 840  RVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGYN 661
            RVDTLSH L+YPQRPLFRTM++D+LG+P YP GH   +PKPEYFNGQNAIVAVNVH GYN
Sbjct: 763  RVDTLSHNLHYPQRPLFRTMIADSLGKPGYPVGHNGFMPKPEYFNGQNAIVAVNVHLGYN 822

Query: 660  QEDSLVMNQASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVDS 481
            QEDS+VMN+ASLERGMFR+EH+R+YKAEV+NK   E KR K  + V+FGKIQSK GRVD+
Sbjct: 823  QEDSIVMNRASLERGMFRSEHIRSYKAEVENKLSLE-KRRKPDECVNFGKIQSKFGRVDN 881

Query: 480  LDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVVS 301
            LDDDGFP +GA+LQSGDI+IGR +ESG DHSIKLKHTERG VQKVVLS+ND G N+AVVS
Sbjct: 882  LDDDGFPCVGASLQSGDIIIGRCSESGTDHSIKLKHTERGMVQKVVLSSNDAGKNFAVVS 941

Query: 300  LRQVRLPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLL 121
            LRQVR P LGDKFSSMHGQKGV+G LE QENFPFT +GIVPDIVINPHAFP+RQTPGQLL
Sbjct: 942  LRQVRSPSLGDKFSSMHGQKGVLGFLEYQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 1001

Query: 120  EAALGKGIACVGSTRYATPFSTPSVDVITDQLHRSGYSRW 1
            EAALGKGIAC GS RYATPFST SVD ITDQLHR+G+SRW
Sbjct: 1002 EAALGKGIACGGSKRYATPFSTLSVDDITDQLHRAGFSRW 1041


>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1031

 Score = 1346 bits (3483), Expect = 0.0
 Identities = 674/1035 (65%), Positives = 805/1035 (77%), Gaps = 8/1035 (0%)
 Frame = -3

Query: 3099 DDNAVTDTAEALNPS---STSKDVNKASTSTANDDTCLSEELLTKFCRQASMEFFSEYGL 2929
            DD  +    E L+P     T  D +  S      D  L E  L  FC+++SM FF++YGL
Sbjct: 8    DDIEMNSEGEDLSPGMDLDTDDDDDYYSEPVNIHD--LGEAFLKDFCKKSSMAFFNQYGL 65

Query: 2928 ISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKKGQGEWRYAAVTFGKVTLEPPTFW 2749
            ISHQI+SYN FI+NGIQK FD  G+I V+PGYDPSKKG GEWRYA V FGKVTL+ P FW
Sbjct: 66   ISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKGDGEWRYATVKFGKVTLDKPKFW 125

Query: 2748 STEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSVQVYTQKLMKSDKFKTGKEQFVQK 2569
                  K+      ++PRHARLQNMTYSSRMK+ +S+++YTQKL+ SDKFKTGK+Q+V K
Sbjct: 126  GGAASGKE----YNMLPRHARLQNMTYSSRMKINISLEIYTQKLVSSDKFKTGKDQYVDK 181

Query: 2568 H-VE-SEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFDHGGYFLIKGAEKTFIAQEQIC 2395
              VE + D RDV IGR+PVMV S+LCWM   +K DC+FD GGYFLIKGAEK FIAQEQIC
Sbjct: 182  EPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFLIKGAEKIFIAQEQIC 241

Query: 2394 LKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQGL-KILNVQFLSMSIPLWILF 2218
            L+RLW+S    W+VAYRSE+KR R+ ++L++   +E ++   K+LNV FLS  +P+WILF
Sbjct: 242  LRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKSKEKVLNVYFLSTEVPVWILF 301

Query: 2217 FYLGMSSDREIIEMIDVNLDDPILVNILIATIKYAD--ENCEGFRKEGKPLKYIDDLMSQ 2044
            F LG+SSD+EI+++ID   DDP ++NIL A+++  D  +  + FR+  + L ++D+ + +
Sbjct: 302  FALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRK 361

Query: 2043 TKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLLSYTGRRKCENRDDFRNKXXX 1864
            T FPP + I+DC++ YLF +L   K K  FLGYMVKCLL +YTGRRKC+NRDDFRNK   
Sbjct: 362  TSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFE 421

Query: 1863 XXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRPIEHYLDASIITNGLSRAFSTGAW 1684
                      +VHI HA RRM KA+QRDLYGDR + PIEHYLDASIITNGLSRAFSTGAW
Sbjct: 422  LAAELLERELKVHIAHARRRMEKALQRDLYGDRQVHPIEHYLDASIITNGLSRAFSTGAW 481

Query: 1683 SHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTGKVGDARFPNPSHWGKLCFLS 1504
            +H FKR ER +GVVATL R NPLQ  A+LR+TRQQVAYTGKVGDAR+P+PSHWG++CFLS
Sbjct: 482  AHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLS 541

Query: 1503 TPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLADDPSLTSLKGRDKVFLNGEW 1324
            TPDGENCGL+KN++ TGLVS N  + +   L  CGMENL D+ S TS  G+ ++FL+GEW
Sbjct: 542  TPDGENCGLIKNLSGTGLVSLNTKKSITPTLFRCGMENLVDNTS-TSFCGKYRIFLDGEW 600

Query: 1323 VGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRIFSDAGRILRPLLVVENLKKI 1144
            VG+C+ SLSFV N+R KRR      +VE+KRD+Q  EVRIFSDAGRILRPLLVVENL +I
Sbjct: 601  VGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRI 660

Query: 1143 NMFKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIKYLLTGDKDQPSVDYTHCELDLSF 964
            +  KG  Y FQS                DC+ AW IK+L+   +D+ +  Y+HCELD+SF
Sbjct: 661  DKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKHLM---EDEGTTKYSHCELDMSF 717

Query: 963  LLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRT 784
            LLGLSCG++PFANHDHARR L+QS+KHS QAIGFS TN N RVDTLSHQL+YPQRPLFRT
Sbjct: 718  LLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSPTNSNFRVDTLSHQLHYPQRPLFRT 777

Query: 783  MLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGYNQEDSLVMNQASLERGMFRT 604
            M +D LG P Y   H  +LPKPE++NGQNAIVAVNVH GYNQEDSLVMN+ASLERGMFR+
Sbjct: 778  MTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 837

Query: 603  EHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIV 424
            EH+R+YKAEVDNKE  E KR K+ D ++FGK QSKIGRVDSLDDDGFP+IGANLQSGDIV
Sbjct: 838  EHIRSYKAEVDNKESSE-KRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIV 896

Query: 423  IGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVVSLRQVRLPCLGDKFSSMHGQ 244
            IGR AESGADHSIKLKHTE+G VQKVVLS+ND+G NYAVVSLRQVR PCLGDKFSSMHGQ
Sbjct: 897  IGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQ 956

Query: 243  KGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLLEAALGKGIACVGSTRYATP 64
            KGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQLLEAALGKGIA  GS +YATP
Sbjct: 957  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATP 1016

Query: 63   FSTPSVDVITDQLHR 19
            FSTPSVD ITDQLHR
Sbjct: 1017 FSTPSVDAITDQLHR 1031


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score = 1335 bits (3455), Expect = 0.0
 Identities = 663/1001 (66%), Positives = 786/1001 (78%), Gaps = 2/1001 (0%)
 Frame = -3

Query: 2997 LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 2818
            L E  L  FC++AS  FFSEYGLISHQI+SYN FI NG+QK+FDS G++ VEPGYDPSKK
Sbjct: 43   LGEVFLQNFCKEASTSFFSEYGLISHQINSYNDFIRNGVQKVFDSFGDLIVEPGYDPSKK 102

Query: 2817 GQGEWRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMSV 2638
             Q EWRYA V FGKVTL+ P+FW      K+      L+PRHARLQNMTYSSRMKV + +
Sbjct: 103  RQNEWRYALVRFGKVTLDLPSFWGGADKDKE----YNLLPRHARLQNMTYSSRMKVNVHI 158

Query: 2637 QVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDFD 2458
            +VYTQKL++SDKFKTGKEQF+ K + S + +DV+IGRIPVMV+S+LCWM   +KGDC FD
Sbjct: 159  EVYTQKLVRSDKFKTGKEQFLDKEIISTEDKDVMIGRIPVMVKSDLCWMKDAEKGDCYFD 218

Query: 2457 HGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESIQ 2278
            HGGYF+IKGAEKTFIAQEQIC KRLW++   N +VAY+SE+KR R+ L+L      ++  
Sbjct: 219  HGGYFIIKGAEKTFIAQEQICRKRLWITSHQNLTVAYQSEVKRNRLILRLAQSGLEDTTV 278

Query: 2277 GLKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADENCE 2098
               +L V FLS  IP+WILFF LG+SSD+E++++ID   DD  ++NIL  +I+ +DE C 
Sbjct: 279  EKDVLCVYFLSTEIPVWILFFALGVSSDKEVVDLIDFPTDDASILNILFPSIQISDEVCA 338

Query: 2097 GFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLLSY 1918
            GFR++ K L +++  + +T+FPP E  ++C+D +LFP L  +  KA FLGYMVKCLL ++
Sbjct: 339  GFRRQKKALGFVEKHIKKTQFPPRESAEECLDMFLFPNLRGMLQKARFLGYMVKCLLQAF 398

Query: 1917 TGRRKCENRDDFRNKXXXXXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRPIEHYL 1738
            TGRRKC N+DDFRNK             R  + HA +R  KA+QRDLYGD+ LR IE YL
Sbjct: 399  TGRRKCNNKDDFRNKRLDLAGELLERELRAQVSHARKRTAKALQRDLYGDKGLRQIEFYL 458

Query: 1737 DASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTGKV 1558
            DASI+TNGLSRAFSTGAW HPFK+TER +GVVA + RTNPLQ   D+RKTRQQV YTGKV
Sbjct: 459  DASIVTNGLSRAFSTGAWCHPFKKTERISGVVANVGRTNPLQTVVDMRKTRQQVQYTGKV 518

Query: 1557 GDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLADD 1378
            GDAR+P+PSHWGK+CFLSTPDGENCGLVKN+AATGLVS N+ E L+  L   GMENLA+D
Sbjct: 519  GDARYPHPSHWGKVCFLSTPDGENCGLVKNLAATGLVSINIAESLISTLCDSGMENLAND 578

Query: 1377 PSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRIFS 1198
             + T L  + KVFLNG+W+G+C  SL+FV  LR KRR  ++P +VEIKRD+Q GEVRIFS
Sbjct: 579  -TYTPLHEKHKVFLNGDWIGVCADSLAFVTELRRKRRRNELPHQVEIKRDEQHGEVRIFS 637

Query: 1197 DAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIKYLLTG 1018
            D+GRILRPLLVVENL +I   K G Y F S                DC+TAWGIKYL   
Sbjct: 638  DSGRILRPLLVVENLNRIKPSKEGKYTFHSLLDKGIIELIGAEEEEDCRTAWGIKYLFME 697

Query: 1017 DKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPNIR 838
            D  +P V+YTHCELD+SFLL +SCGIIPFANHDHARRVLYQ++KHSQQAIGF TTNP+IR
Sbjct: 698  DGGKP-VNYTHCELDMSFLLSVSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPDIR 756

Query: 837  VDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGYNQ 658
            VDTLSHQL+YPQRPLF+TM SD LG+  Y       +PK E FNGQNAIVAVNVH GYNQ
Sbjct: 757  VDTLSHQLHYPQRPLFQTMTSDCLGKRGYAPSQNGFIPKFECFNGQNAIVAVNVHLGYNQ 816

Query: 657  EDSLVMNQASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVDSL 478
            EDS+VMN+ASLERGMFR+EH+R+YKA+VDNKE  + KR K  D  +F KI SK GRVDSL
Sbjct: 817  EDSIVMNRASLERGMFRSEHIRSYKADVDNKESTD-KRRKPDDCFNFAKIPSKNGRVDSL 875

Query: 477  DDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVVSL 298
            DDDGFPFIGANLQSGDIVIGR AESGADHSIKLKHTE+G VQKVVLS+ND+G N+AVVSL
Sbjct: 876  DDDGFPFIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVSL 935

Query: 297  RQVRLPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQLLE 118
            RQVR P LGDKFSSMHGQKGV+G LESQENFPFT +GIVPDIVINPHAFP+RQTPGQLLE
Sbjct: 936  RQVRQPILGDKFSSMHGQKGVLGYLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 995

Query: 117  AALGKGIACVGS--TRYATPFSTPSVDVITDQLHRSGYSRW 1
            AALGKGIA       R+ATPFSTPSVD IT+QLH++G+SRW
Sbjct: 996  AALGKGIALAKGIPLRHATPFSTPSVDAITEQLHKAGFSRW 1036


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score = 1333 bits (3449), Expect = 0.0
 Identities = 658/1001 (65%), Positives = 797/1001 (79%), Gaps = 2/1001 (0%)
 Frame = -3

Query: 2997 LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 2818
            L ++++  FC++AS+ FF EYGLISHQI+SYN F  +G+Q  FDS G++TV PG+DPSKK
Sbjct: 47   LGDDMVRYFCKKASIMFFDEYGLISHQINSYNQFATSGLQNTFDSFGDLTVTPGFDPSKK 106

Query: 2817 GQGE-WRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMS 2641
            G  E +RYA+V FGKVTL+ P FW  E   ++    +K++PRHARLQ MTY+S+MKV + 
Sbjct: 107  GDNEHYRYASVKFGKVTLDRPMFWCGEGNTQE----MKMLPRHARLQRMTYASKMKVNVQ 162

Query: 2640 VQVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDF 2461
            VQVY  K ++SDKFKTGKE+++ + +  ++ R++ IGR+PVMV+S+LCWMNG++KGDC+F
Sbjct: 163  VQVYIPKKVRSDKFKTGKEEYIDREIIMDENREITIGRLPVMVKSDLCWMNGVEKGDCEF 222

Query: 2460 DHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESI 2281
            DHGGYFLIKGAEK FIAQEQI LKRLWV+  P W+VAY+S++KR R+ +KL++    E I
Sbjct: 223  DHGGYFLIKGAEKIFIAQEQIFLKRLWVTNVPYWAVAYKSQMKRNRMVVKLVENTTVEGI 282

Query: 2280 Q-GLKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADEN 2104
            + G K+L V FLS+ IP+W+LFF LG++SD++I+++ID    D  + NIL A+I+ ADE 
Sbjct: 283  KNGEKVLTVYFLSVEIPVWLLFFALGVTSDKQIVDLIDYGEGDGRIQNILFASIREADEK 342

Query: 2103 CEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLL 1924
            CE FR+    L YI++ +   +FPP E I +C++ Y+FP +  L  KA +L YMVK LLL
Sbjct: 343  CEQFRRGKNALLYIEERVKGVQFPPPESIDECLNMYVFPNIKGLNRKARYLAYMVKVLLL 402

Query: 1923 SYTGRRKCENRDDFRNKXXXXXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRPIEH 1744
            +YTGRRK +NRDDFRNK             +VHI HA +RM KA+QRDLYGDR++  IEH
Sbjct: 403  AYTGRRKTDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRDVHQIEH 462

Query: 1743 YLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTG 1564
            YLDASIITNGL RAFSTGAW+HP+KR ER +GVVATL RTNPLQ  A+LR+TRQQV YTG
Sbjct: 463  YLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTG 522

Query: 1563 KVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEPLLDKLLGCGMENLA 1384
            KVGDAR+P+PSHWGK+CFLSTPDGENCGLVKNMA TGLVSTN+ E +L +L  CGME L 
Sbjct: 523  KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTNVTESILPQLFACGMEELV 582

Query: 1383 DDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGEVRI 1204
            DD +   L  +DKVFLNG+WVG+C  S SFV  LR++RR  ++P +VEIKRD  Q EVRI
Sbjct: 583  DDTTAV-LGNKDKVFLNGDWVGVCSDSASFVAELRNRRRKNELPHQVEIKRDPSQEEVRI 641

Query: 1203 FSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIKYLL 1024
             SDAGRILRPLLVV NL KI   K     FQS                DCKTAWG+ YL 
Sbjct: 642  LSDAGRILRPLLVVSNLLKIKGSKSDPKSFQSLLDNGLIELIGPEEEEDCKTAWGVPYLF 701

Query: 1023 TGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTNPN 844
             G + + SV YTHCELD+SFLLGLSC ++PFANHDHARRVLYQS+KHS QAIGFSTTNP+
Sbjct: 702  -GKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPD 760

Query: 843  IRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVHQGY 664
            IRVD LSHQL+YPQ+PLF+TM SD LG+P Y  G + +LPK E++NGQNAIVAVNVH GY
Sbjct: 761  IRVDALSHQLFYPQKPLFQTMTSDCLGKPGY-LGPSKLLPKSEFYNGQNAIVAVNVHLGY 819

Query: 663  NQEDSLVMNQASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIGRVD 484
            NQEDSLVMN+ASL+RGMFR+EH+R+YKAE +NKE  E KR K +D V+FGKIQSKIGRVD
Sbjct: 820  NQEDSLVMNRASLQRGMFRSEHIRSYKAENENKESTEKKR-KPEDIVNFGKIQSKIGRVD 878

Query: 483  SLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNYAVV 304
            SLDDDGFPF+GANLQ GDI+IGR A+SGADHSIKLKHTERG VQKVVLS+NDEG N+AVV
Sbjct: 879  SLDDDGFPFVGANLQIGDIIIGRCADSGADHSIKLKHTERGYVQKVVLSSNDEGKNFAVV 938

Query: 303  SLRQVRLPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTPGQL 124
            SLRQVR P LGDKFSSMHGQKGV+G LESQENFPFT++GIVPDIVINPHAFP+RQTPGQL
Sbjct: 939  SLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQL 998

Query: 123  LEAALGKGIACVGSTRYATPFSTPSVDVITDQLHRSGYSRW 1
            LEAALGKGIACVGS R ATPFST SV+ ITDQLHR+G+SRW
Sbjct: 999  LEAALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRW 1039


>gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus guttatus]
          Length = 1211

 Score = 1328 bits (3437), Expect = 0.0
 Identities = 660/1004 (65%), Positives = 795/1004 (79%), Gaps = 5/1004 (0%)
 Frame = -3

Query: 2997 LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 2818
            LSE  L   CR+AS  FF +YGLISHQI+SYN F+ +GIQK+FDS+GEI VEPGYDPSKK
Sbjct: 50   LSEGFLKVSCRKASTAFFDQYGLISHQINSYNDFVNHGIQKVFDSIGEIVVEPGYDPSKK 109

Query: 2817 GQGEWRYAAVTFGKVTLEPPTFWSTEKPQK--DSKEFLKLMPRHARLQNMTYSSRMKVEM 2644
            G+G+W+ A + FGKVTLE PTFW+ EK      +K++L+L+PRHARLQNMTY++++KVE 
Sbjct: 110  GEGDWKRACLKFGKVTLERPTFWTGEKFSSVDGAKDYLELLPRHARLQNMTYAAKIKVET 169

Query: 2643 SVQVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCD 2464
             +QVYT+ L +SDKF TG E  V+K + +E   +V  GR+PVMV+S+LCWM  L K DC+
Sbjct: 170  HLQVYTKGLNRSDKFTTGVENTVEKTLLNEYHNEVNFGRLPVMVKSDLCWMKSLDKKDCE 229

Query: 2463 FDHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNES 2284
            FD GGYF+IKGAEKTFIAQEQ+CLKRLWV++ P+W+V+YR   +R RVY+KL+  P  E 
Sbjct: 230  FDQGGYFVIKGAEKTFIAQEQLCLKRLWVTKIPSWTVSYRPVARRNRVYIKLV--PKMEH 287

Query: 2283 IQGL-KILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADE 2107
            + G  KIL V F    I +W+LFF LG+ +D+E++++ID++++D  + NILIA+I  AD+
Sbjct: 288  VIGADKILTVYFYVTEISVWVLFFALGIPNDKEVVKLIDLDIEDSDIANILIASIYDADK 347

Query: 2106 NCEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLL 1927
              EGFRKEG   K+I +LM   KFPP E I+D +  YLFP L     KA FLGYMVKCLL
Sbjct: 348  KYEGFRKEGNSSKHIKELMQNCKFPPTESIEDLIKNYLFPHLKTPIQKACFLGYMVKCLL 407

Query: 1926 LSYTGRRKCENRDDFRNKXXXXXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRPIE 1747
             +Y GRRK ENRDDFRNK             RVHI+HAERRM KAMQRDLY DR ++ I+
Sbjct: 408  EAYKGRRKVENRDDFRNKRLELAGELLERELRVHIKHAERRMTKAMQRDLYRDREVQSID 467

Query: 1746 HYLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYT 1567
             YLDASI+TNGLSRAFSTGAW HPFKR ERT+GVVAT+RRTNPLQ  AD+RKTRQQV+YT
Sbjct: 468  QYLDASIVTNGLSRAFSTGAWCHPFKRMERTSGVVATIRRTNPLQAIADMRKTRQQVSYT 527

Query: 1566 GKVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVSTNLVEP--LLDKLLGCGME 1393
            G+VGDAR+P+PSHWGK+CFLSTPDGENCGLVKN+A+ GLVSTNL+    LL K   CGME
Sbjct: 528  GRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGLVSTNLLAQGNLLKKFQQCGME 587

Query: 1392 NLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGE 1213
             + DD S   L G+ KVFL+G+W+GICK S SFV  LR KRR  +IP ++EIKRDQ  GE
Sbjct: 588  KMVDDTS-NLLGGKHKVFLDGDWIGICKDSSSFVSKLRRKRRRMEIPHQMEIKRDQHNGE 646

Query: 1212 VRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIK 1033
            VRIF+D+GRILRPLLVV+NLKKI   KG  + FQS                DC+TAWG++
Sbjct: 647  VRIFNDSGRILRPLLVVQNLKKIKDLKGN-FSFQSLLDNGIIELIGAEEEEDCQTAWGVR 705

Query: 1032 YLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTT 853
            YL T + + P V YTHCELD SFLLGLSCGI+PF NHDHARRVLYQSEKHSQQAIG+STT
Sbjct: 706  YLFTAELENPPVKYTHCELDSSFLLGLSCGIVPFTNHDHARRVLYQSEKHSQQAIGYSTT 765

Query: 852  NPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVH 673
            N  IRVDT SH LYYPQRPLFRT+LSD+LGR  +   +  ++P+PE++NGQ AIVA+NVH
Sbjct: 766  NSIIRVDTNSHSLYYPQRPLFRTVLSDSLGRSTFSDHYKGMIPRPEFYNGQCAIVAINVH 825

Query: 672  QGYNQEDSLVMNQASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIG 493
             GYNQEDSLVMN++SLERGMFRTEHVR++KA+V+N E    K++K  + V FGK+QSKIG
Sbjct: 826  LGYNQEDSLVMNRSSLERGMFRTEHVRSFKADVENSEAVGGKKVKMDEMVSFGKMQSKIG 885

Query: 492  RVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNY 313
            RVDSL+DDGFP+IGANLQ+GDIVIG+ A +G DHSIKLKHTE+G V KVVLSANDEG N+
Sbjct: 886  RVDSLEDDGFPYIGANLQTGDIVIGKHAATGVDHSIKLKHTEKGMVHKVVLSANDEGKNF 945

Query: 312  AVVSLRQVRLPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTP 133
            AVVSLRQVR PCLGDKFSSMHGQKGV+G LESQENFPF+++GIVPDIVINPHAFP+RQTP
Sbjct: 946  AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFSQQGIVPDIVINPHAFPSRQTP 1005

Query: 132  GQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQLHRSGYSRW 1
            GQLLEAALGKGIA  G  +YATPFS+PSV+ IT QLHR G+SRW
Sbjct: 1006 GQLLEAALGKGIALGGGLKYATPFSSPSVEDITAQLHRLGFSRW 1049


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1317 bits (3408), Expect = 0.0
 Identities = 641/1004 (63%), Positives = 799/1004 (79%), Gaps = 5/1004 (0%)
 Frame = -3

Query: 2997 LSEELLTKFCRQASMEFFSEYGLISHQISSYNSFIENGIQKLFDSLGEITVEPGYDPSKK 2818
            L E+++  +C++ASM FF EYGLISHQI+S+N F+  G+Q  FDS G++ V PG+DPSKK
Sbjct: 49   LGEDMVKYWCKKASMLFFDEYGLISHQINSFNHFVAIGLQNTFDSFGDLVVTPGFDPSKK 108

Query: 2817 GQGE-WRYAAVTFGKVTLEPPTFWSTEKPQKDSKEFLKLMPRHARLQNMTYSSRMKVEMS 2641
            G+ E +RYA+V FGKV L+ P FW  E    +++EF K++PRHAR+Q MTY+S++K+++ 
Sbjct: 109  GENEHFRYASVKFGKVKLDKPMFWGGEG---NAQEF-KMLPRHARIQRMTYASKVKIQVK 164

Query: 2640 VQVYTQKLMKSDKFKTGKEQFVQKHVESEDKRDVLIGRIPVMVRSNLCWMNGLKKGDCDF 2461
            VQVY  K ++SDKFKTGKE+F+ + +  ED+R+++IGR+PVMV+S+LCWM   +K D +F
Sbjct: 165  VQVYVPKKVRSDKFKTGKEEFLDREIMKEDEREIIIGRLPVMVKSDLCWMKDAEKDDDEF 224

Query: 2460 DHGGYFLIKGAEKTFIAQEQICLKRLWVSEKPNWSVAYRSELKRRRVYLKLIDLPNNESI 2281
            DHGGYF++KGAEKTFIAQEQ+ LKRLWV   P W +AY+S++KR R+ +KL+    +E +
Sbjct: 225  DHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRSEEV 284

Query: 2280 Q-GLKILNVQFLSMSIPLWILFFYLGMSSDREIIEMIDVNLDDPILVNILIATIKYADEN 2104
            + G   L V FLS+ +P+W+LFF LG+SSD+EI+++I    DD  + NIL A+++ ADE 
Sbjct: 285  ENGDMCLTVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRDADEK 344

Query: 2103 CEGFRKEGKPLKYIDDLMSQTKFPPGEPIKDCMDKYLFPTLHDLKLKALFLGYMVKCLLL 1924
            C  FR+    ++Y++  +   +FPP E +++C++ Y+FP +  L  KA FL YMVK LLL
Sbjct: 345  CGAFRRVRNAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVKGLLL 404

Query: 1923 SYTGRRKCENRDDFRNKXXXXXXXXXXXXXRVHIRHAERRMVKAMQRDLYGDRNLRPIEH 1744
            +YTGRRKC+NRDDFRNK             +VH+ HA +RM KA+QRDLYGDR++RPIEH
Sbjct: 405  AYTGRRKCDNRDDFRNKRLELASELLDRELKVHVAHARKRMAKALQRDLYGDRDVRPIEH 464

Query: 1743 YLDASIITNGLSRAFSTGAWSHPFKRTERTAGVVATLRRTNPLQMTADLRKTRQQVAYTG 1564
            YLDASIITNGL RAFSTGAWSHP+KR ER +GVVA + RTNPLQ  A+LR+ RQQV YTG
Sbjct: 465  YLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQYTG 524

Query: 1563 KVGDARFPNPSHWGKLCFLSTPDGENCGLVKNMAATGLVS---TNLVEPLLDKLLGCGME 1393
            KVGDAR+P+PSHWGK+CFL+TPDGENCGLVKN++ TGLVS   T++ E +L KL+ CGM+
Sbjct: 525  KVGDARYPHPSHWGKVCFLTTPDGENCGLVKNLSVTGLVSTDVTDVTESILLKLVDCGMQ 584

Query: 1392 NLADDPSLTSLKGRDKVFLNGEWVGICKGSLSFVMNLRSKRRSKQIPPEVEIKRDQQQGE 1213
             L DD S T L   DKV LNG+WVG+C  S SFV  LRS+RR  ++P +VEIKRDQ Q E
Sbjct: 585  ELVDDTS-THLGSMDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHE 643

Query: 1212 VRIFSDAGRILRPLLVVENLKKINMFKGGGYMFQSXXXXXXXXXXXXXXXXDCKTAWGIK 1033
            VRI+SDAGRILRPLLVV NL KI  FK   Y FQS                DC TAWG++
Sbjct: 644  VRIYSDAGRILRPLLVVGNLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTAWGVE 703

Query: 1032 YLLTGDKDQPSVDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTT 853
            YL  G + + SV YTHCELD+SFLLGLSC ++PFANHDHARRVLYQS+KHS QAIGFSTT
Sbjct: 704  YLF-GKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTT 762

Query: 852  NPNIRVDTLSHQLYYPQRPLFRTMLSDNLGRPEYPRGHTSVLPKPEYFNGQNAIVAVNVH 673
            NPNIRVDTLSHQL+YPQ+PLFRTM SD LG+P++  G + + PK E++NGQNAIVAVNVH
Sbjct: 763  NPNIRVDTLSHQLHYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAVNVH 822

Query: 672  QGYNQEDSLVMNQASLERGMFRTEHVRNYKAEVDNKELFETKRLKTKDRVDFGKIQSKIG 493
             GYNQEDSLVMN+ASL+RGMFR+EH+R+YK+E+DNKE  + KR K +D V+F K+QSKIG
Sbjct: 823  LGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKR-KPEDIVNFAKLQSKIG 881

Query: 492  RVDSLDDDGFPFIGANLQSGDIVIGRRAESGADHSIKLKHTERGKVQKVVLSANDEGTNY 313
            RVDSLDDDGFP++GANLQSGDI+IG+ AESGAD+S+KLKHTERG VQKVVLS+NDEG N+
Sbjct: 882  RVDSLDDDGFPYVGANLQSGDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNF 941

Query: 312  AVVSLRQVRLPCLGDKFSSMHGQKGVVGLLESQENFPFTREGIVPDIVINPHAFPTRQTP 133
            AVVSLRQVR P LGDKFSSMHGQKGV+G LESQENFPFTR+GIVPDIVINPHAFP+RQTP
Sbjct: 942  AVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTP 1001

Query: 132  GQLLEAALGKGIACVGSTRYATPFSTPSVDVITDQLHRSGYSRW 1
            GQLLEAALGKGIAC G  + ATPFSTPSVD IT+QLHR+G+SRW
Sbjct: 1002 GQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLHRAGFSRW 1045