BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia26_contig00005125
         (996 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   243   9e-62
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr...   236   8e-60
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-...   235   2e-59
ref|XP_006371210.1| hypothetical protein POPTR_0019s06020g [Popu...   224   3e-56
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...   224   3e-56
ref|XP_007029767.1| Sigma factor A isoform 2 [Theobroma cacao] g...   221   5e-55
ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao] g...   221   5e-55
ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prun...   219   1e-54
ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-...   214   3e-53
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      213   1e-52
ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-...   206   1e-50
ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-...   201   4e-49
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-...   201   5e-49
ref|XP_004307835.1| PREDICTED: RNA polymerase sigma factor sigA-...   200   7e-49
ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [A...   199   1e-48
ref|XP_007131471.1| hypothetical protein PHAVU_011G016400g [Phas...   198   3e-48
ref|XP_002319237.2| hypothetical protein POPTR_0013s07290g [Popu...   194   6e-47
gb|AEO45243.1| sigma factor [Nicotiana tabacum]                       184   5e-44
dbj|BAA88922.1| sigma factor [Nicotiana tabacum]                      181   3e-43
ref|XP_004499502.1| PREDICTED: RNA polymerase sigma factor sigA-...   181   5e-43

>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 508

 Score =  243 bits (620), Expect = 9e-62
 Identities = 139/235 (59%), Positives = 167/235 (71%), Gaps = 2/235 (0%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           MATAAVIGLSAGKRLLSS+ YYSD+T+KL   +++GLT YQ +  K + +AKKSSN+G +
Sbjct: 1   MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60

Query: 521 FPS-NRHTEHINALKEHVDASSTPATDAWLQRS-NFIEEGSSDIESSVEVLLLLQKSMLE 348
           FPS NR+T+ I ALKEHVD +S P+T A   ++ N +EE SSD++ SVE LLLLQKSMLE
Sbjct: 61  FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLE 120

Query: 347 KQWNLSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRKHF 168
           KQWNLSFE+      P  +  KK  VT                +L Q+   V     K  
Sbjct: 121 KQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQL 180

Query: 167 RSIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
           +S VSPELLQ+RLKGYVKGV SEELL+HAEVV LS+ IKAGLSLEDHKSRLKERL
Sbjct: 181 KSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERL 235


>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
           gi|557539599|gb|ESR50643.1| hypothetical protein
           CICLE_v10031289mg [Citrus clementina]
          Length = 508

 Score =  236 bits (603), Expect = 8e-60
 Identities = 133/234 (56%), Positives = 154/234 (65%), Gaps = 1/234 (0%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           MATAAVIGLSAGKRLLSSS YYSDI++K    +D G    Q    KNV  AKKSSN+  +
Sbjct: 2   MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61

Query: 521 FPS-NRHTEHINALKEHVDASSTPATDAWLQRSNFIEEGSSDIESSVEVLLLLQKSMLEK 345
           FPS NR T+ I ALKEHVD +     + W +  N IEE SS+++ SVE LLLLQKSMLEK
Sbjct: 62  FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLEK 121

Query: 344 QWNLSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRKHFR 165
           QWNLSFE+  +   P  +  KK  VT                 L QN   +     K  R
Sbjct: 122 QWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVLQQNGSKQLR 181

Query: 164 SIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
           S++SPEL+Q+ LKGYVKGV SEELLTHAEVV LSKKIK GLSL+DHK RLKERL
Sbjct: 182 SMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235


>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
           sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED:
           RNA polymerase sigma factor sigA-like isoform X2 [Citrus
           sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED:
           RNA polymerase sigma factor sigA-like isoform X3 [Citrus
           sinensis]
          Length = 508

 Score =  235 bits (600), Expect = 2e-59
 Identities = 133/234 (56%), Positives = 153/234 (65%), Gaps = 1/234 (0%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           MATAAVIGLSAGKRLLSSS YYSDI++K    +D G    Q    KNV  AKKSSN+  +
Sbjct: 2   MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNPS 61

Query: 521 FPS-NRHTEHINALKEHVDASSTPATDAWLQRSNFIEEGSSDIESSVEVLLLLQKSMLEK 345
           FPS NR T+ I ALKEHVD +     + W +  N IEE SS+++ SVE LLLLQKSMLEK
Sbjct: 62  FPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLEK 121

Query: 344 QWNLSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRKHFR 165
           QWNLSFE+  +   P  +  KK  VT                 L QN         K  R
Sbjct: 122 QWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVPQQNGSKQLR 181

Query: 164 SIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
           S++SPEL+Q+ LKGYVKGV SEELLTHAEVV LSKKIK GLSL+DHK RLKERL
Sbjct: 182 SMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERL 235


>ref|XP_006371210.1| hypothetical protein POPTR_0019s06020g [Populus trichocarpa]
           gi|550316904|gb|ERP49007.1| hypothetical protein
           POPTR_0019s06020g [Populus trichocarpa]
          Length = 451

 Score =  224 bits (572), Expect = 3e-56
 Identities = 128/235 (54%), Positives = 158/235 (67%), Gaps = 2/235 (0%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           MATAAVIGLS+GKRLLSSS YYSD+T+KL   +D+G+T Y T+  KNV +AKKSSN+G +
Sbjct: 2   MATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGPS 61

Query: 521 FP-SNRHTEHINALKEHVDASSTPATDA-WLQRSNFIEEGSSDIESSVEVLLLLQKSMLE 348
           FP SNR++  I ALKEHVD +S  +  A W +  +  EE SS ++ SVE LLLLQKSMLE
Sbjct: 62  FPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSMLE 121

Query: 347 KQWNLSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRKHF 168
           KQWNLSFE+         +  KK  VT                + +Q+         K  
Sbjct: 122 KQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKFL 181

Query: 167 RSIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
           RS+ SP+LLQ+RLKGYVKGV S+E+L H EVV LS+ I+AGLS EDHKSRLKERL
Sbjct: 182 RSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERL 236


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
           gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
           1 family protein [Populus trichocarpa]
          Length = 509

 Score =  224 bits (572), Expect = 3e-56
 Identities = 128/235 (54%), Positives = 158/235 (67%), Gaps = 2/235 (0%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           MATAAVIGLS+GKRLLSSS YYSD+T+KL   +D+G+T Y T+  KNV +AKKSSN+G +
Sbjct: 2   MATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGPS 61

Query: 521 FP-SNRHTEHINALKEHVDASSTPATDA-WLQRSNFIEEGSSDIESSVEVLLLLQKSMLE 348
           FP SNR++  I ALKEHVD +S  +  A W +  +  EE SS ++ SVE LLLLQKSMLE
Sbjct: 62  FPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSMLE 121

Query: 347 KQWNLSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRKHF 168
           KQWNLSFE+         +  KK  VT                + +Q+         K  
Sbjct: 122 KQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKFL 181

Query: 167 RSIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
           RS+ SP+LLQ+RLKGYVKGV S+E+L H EVV LS+ I+AGLS EDHKSRLKERL
Sbjct: 182 RSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERL 236


>ref|XP_007029767.1| Sigma factor A isoform 2 [Theobroma cacao]
           gi|508718372|gb|EOY10269.1| Sigma factor A isoform 2
           [Theobroma cacao]
          Length = 450

 Score =  221 bits (562), Expect = 5e-55
 Identities = 132/235 (56%), Positives = 158/235 (67%), Gaps = 2/235 (0%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           MATAAVIGL+ GKRLLSSS  YSDI +KL   +DYG + +QTS  K++ +AKKSSN   +
Sbjct: 2   MATAAVIGLTTGKRLLSSSFSYSDIIEKLSYANDYGSSHHQTSSTKSLIVAKKSSNCSQS 61

Query: 521 FPS-NRHTEHINALKEHVDASSTPAT-DAWLQRSNFIEEGSSDIESSVEVLLLLQKSMLE 348
            PS NR  + I ALKEHVD++S  +T +   Q SN +E  S D++ SVE LLLLQKSMLE
Sbjct: 62  LPSSNRRAQSIKALKEHVDSASIVSTAEPLFQGSNDLEVESYDLDYSVEALLLLQKSMLE 121

Query: 347 KQWNLSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRKHF 168
           KQW LSFE+      P  +  KK  VT                 L QN   + P   K  
Sbjct: 122 KQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFNTKRKILIQNKSIIQPNA-KQL 180

Query: 167 RSIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
           RS++SPELLQSRLKGYVKGV S+ELL+HAEVV LSKKIKAGLSLE+H+ RLKERL
Sbjct: 181 RSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKERL 235


>ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao]
           gi|508718371|gb|EOY10268.1| Sigma factor A isoform 1
           [Theobroma cacao]
          Length = 508

 Score =  221 bits (562), Expect = 5e-55
 Identities = 132/235 (56%), Positives = 158/235 (67%), Gaps = 2/235 (0%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           MATAAVIGL+ GKRLLSSS  YSDI +KL   +DYG + +QTS  K++ +AKKSSN   +
Sbjct: 2   MATAAVIGLTTGKRLLSSSFSYSDIIEKLSYANDYGSSHHQTSSTKSLIVAKKSSNCSQS 61

Query: 521 FPS-NRHTEHINALKEHVDASSTPAT-DAWLQRSNFIEEGSSDIESSVEVLLLLQKSMLE 348
            PS NR  + I ALKEHVD++S  +T +   Q SN +E  S D++ SVE LLLLQKSMLE
Sbjct: 62  LPSSNRRAQSIKALKEHVDSASIVSTAEPLFQGSNDLEVESYDLDYSVEALLLLQKSMLE 121

Query: 347 KQWNLSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRKHF 168
           KQW LSFE+      P  +  KK  VT                 L QN   + P   K  
Sbjct: 122 KQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFNTKRKILIQNKSIIQPNA-KQL 180

Query: 167 RSIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
           RS++SPELLQSRLKGYVKGV S+ELL+HAEVV LSKKIKAGLSLE+H+ RLKERL
Sbjct: 181 RSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKERL 235


>ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
           gi|462415485|gb|EMJ20222.1| hypothetical protein
           PRUPE_ppa004393mg [Prunus persica]
          Length = 512

 Score =  219 bits (559), Expect = 1e-54
 Identities = 131/238 (55%), Positives = 154/238 (64%), Gaps = 5/238 (2%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDY-GLTQYQTSLAKNVTIAKKSSNFGL 525
           MATAAVIGLS GKRLL+SS YYSDIT+KL   +D+ G      S  KNV  A+K SN   
Sbjct: 2   MATAAVIGLSTGKRLLNSSFYYSDITEKLFHLNDHHGFLHCHFSSTKNVVTARKPSNCSS 61

Query: 524 NFPS-NRHTEHINALKEHVDASSTP--ATDAWLQRSNFIEEGSSDIESSVEVLLLLQKSM 354
            FPS NR  + I ALKEHV  +S P  AT  W Q  N +EE SSD+E SVE LLLLQKSM
Sbjct: 62  RFPSSNRPQQSIRALKEHVQTASAPSSATQQWFQELNDLEEESSDLEYSVEALLLLQKSM 121

Query: 353 LEKQWNLSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXS-LDQNSIEVPPGRR 177
           LEKQWNLSFE++ +         KK  VT                   ++++  + P   
Sbjct: 122 LEKQWNLSFEKKVLRDSTSKTTDKKIPVTCSGVSARQRRMTSTKRKTFNKSTCVMHPSTN 181

Query: 176 KHFRSIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
           K  R+IVSPELLQ+ +KGYVKGV SE+LLTH EVV LSKKIK GLS+E+HKSRLKERL
Sbjct: 182 KPLRAIVSPELLQNHVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSVEEHKSRLKERL 239


>ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
           gi|449514942|ref|XP_004164521.1| PREDICTED: RNA
           polymerase sigma factor sigA-like [Cucumis sativus]
          Length = 508

 Score =  214 bits (546), Expect = 3e-53
 Identities = 121/235 (51%), Positives = 158/235 (67%), Gaps = 2/235 (0%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           MATAA+IGL A KRLL+SSSYYSD T+K+L  +DY L Q Q S +K+V IAK S+NF   
Sbjct: 2   MATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSPR 61

Query: 521 FPS-NRHTEH-INALKEHVDASSTPATDAWLQRSNFIEEGSSDIESSVEVLLLLQKSMLE 348
           +PS NRH++  I A+KEHV+  S+P  + W   +++ E+  ++++ +VE LLLLQKSMLE
Sbjct: 62  YPSSNRHSQQCIKAVKEHVETPSSPIAEPWHNTTSW-EDEETELKYTVEALLLLQKSMLE 120

Query: 347 KQWNLSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRKHF 168
           KQW+LSFEQ      P ++ LKK  VT                   ++     P   K  
Sbjct: 121 KQWSLSFEQTVSTDTPKEKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQL 180

Query: 167 RSIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
           R  +SPELLQ+RLKGYVKG+ SEELL+HAEVV LSKKIK GL+LE+ K+RLK+RL
Sbjct: 181 RPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQRL 235


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  213 bits (541), Expect = 1e-52
 Identities = 120/234 (51%), Positives = 151/234 (64%), Gaps = 1/234 (0%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           M+TAAVIGLSAGKRLLSSS YYSD+ +KL    D+ L  +     KNV  AKKSS++  +
Sbjct: 2   MSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSPS 61

Query: 521 FPSNRHTEHINALKEHVDASSTPA-TDAWLQRSNFIEEGSSDIESSVEVLLLLQKSMLEK 345
             S+R ++   +LKEHVD ++ P+   +W +    ++  S D + SVEVLLLLQKSMLEK
Sbjct: 62  CVSSRKSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLEK 121

Query: 344 QWNLSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRKHFR 165
           QWNLS EQ        +++ KK  +T                 LD++S   P    K  R
Sbjct: 122 QWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTSAAKPLR 181

Query: 164 SIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
           SI+ PELLQ+RLKGYVKGV SEELLTHAEV+ LSKKI+ GL LE+ KSRLKERL
Sbjct: 182 SIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERL 235


>ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum
           lycopersicum]
          Length = 509

 Score =  206 bits (524), Expect = 1e-50
 Identities = 120/235 (51%), Positives = 146/235 (62%), Gaps = 2/235 (0%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           MAT AVIGLSAGKRLLSSS YYSD+ +KL    D+ L  +Q    KNV  AKKSS++  +
Sbjct: 2   MATTAVIGLSAGKRLLSSSFYYSDLNEKLSCSSDHSLPCHQVPTVKNVISAKKSSDYSPS 61

Query: 521 FPSNRHTEHINALKEHVDASSTPA-TDAWLQRSNFIEEGSSDIES-SVEVLLLLQKSMLE 348
             S+R  + + ALKEHVD +S P+   +W +R   ++  S D E  SVEVLLLLQKSMLE
Sbjct: 62  CVSSRKLQSVKALKEHVDIASDPSDVQSWFERFEQLQNESDDEEDDSVEVLLLLQKSMLE 121

Query: 347 KQWNLSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRKHF 168
           KQWNLS E+         +  KK  +                  L Q S   P    K  
Sbjct: 122 KQWNLSAEETLTASTQRKKNCKKMHIACSGTSARRRRMDSRQRVLAQKSSATPISATKPL 181

Query: 167 RSIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
           RSI+ P+LLQ+RLKGYVKG+ SEELLTH EV+ LSKKIK GL +E+ KSRLKERL
Sbjct: 182 RSILGPDLLQNRLKGYVKGIVSEELLTHTEVLQLSKKIKVGLHVEEQKSRLKERL 236


>ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1
           [Glycine max] gi|571478813|ref|XP_006587676.1|
           PREDICTED: RNA polymerase sigma factor sigA-like isoform
           X2 [Glycine max]
          Length = 503

 Score =  201 bits (511), Expect = 4e-49
 Identities = 125/237 (52%), Positives = 153/237 (64%), Gaps = 4/237 (1%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           MATAAVIGLS GKRLLSSS +YSD+ +KL    D+G T YQ    K++  AKKSSN+   
Sbjct: 1   MATAAVIGLSGGKRLLSSSYHYSDVIEKLSYGSDFGSTHYQIVPTKSLIAAKKSSNYTPT 60

Query: 521 FP-SNRHTEHINALKEHVDASSTPATDAWLQ--RSNFIEEGSSDIESSVEVLLLLQKSML 351
           FP SN+  + I ALKEHVD + T A D+W Q   SN +E  SS++  SVE LLLLQKSML
Sbjct: 61  FPASNQQNQSIKALKEHVDDAPTIA-DSWFQSCNSNDLEVESSEMGYSVEALLLLQKSML 119

Query: 350 EKQWNLSFEQRRIMGVPGD-ERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRK 174
           EKQWNLSFE+  +       ++ KK  VT                   +    +      
Sbjct: 120 EKQWNLSFEREVLTEHSSKGKKCKKVAVTCSGVSARQRRMNT------KRKTAIKTCGAM 173

Query: 173 HFRSIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
             +S +SPELLQ RLKGYVKG+ SEELL+HAEVV+LS++IK GLSLE+HKSRLKERL
Sbjct: 174 QLKSKISPELLQHRLKGYVKGIVSEELLSHAEVVNLSERIKVGLSLEEHKSRLKERL 230


>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-like [Glycine max]
          Length = 503

 Score =  201 bits (510), Expect = 5e-49
 Identities = 125/237 (52%), Positives = 153/237 (64%), Gaps = 4/237 (1%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           MATAAVIGLS GKRLLSSS +YSDI +KL    D+G T YQ    K++ +AKKSSN+   
Sbjct: 1   MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTPT 60

Query: 521 FP-SNRHTEHINALKEHVDASSTPATDAWLQ--RSNFIEEGSSDIESSVEVLLLLQKSML 351
           FP SN+  + I ALKEHVD + T A D W Q   SN +E  SS++  SVE LLLLQKSML
Sbjct: 61  FPASNQQNQSIKALKEHVDDAPTIA-DPWFQSYNSNDLEVESSEMGYSVEALLLLQKSML 119

Query: 350 EKQWNLSFEQRRIM-GVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRK 174
           EKQWNLSFE+  +       ++ +K  VT                   +    +      
Sbjct: 120 EKQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMN------TKRKTAIKTCGAM 173

Query: 173 HFRSIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
             +S +SPELLQ RLKGYVKG+ SEELL+HAEVV+LS+KIK GLSLE+HKSRLKE+L
Sbjct: 174 QLKSKISPELLQHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKL 230


>ref|XP_004307835.1| PREDICTED: RNA polymerase sigma factor sigA-like [Fragaria vesca
           subsp. vesca]
          Length = 511

 Score =  200 bits (509), Expect = 7e-49
 Identities = 128/241 (53%), Positives = 155/241 (64%), Gaps = 8/241 (3%)
 Frame = -2

Query: 701 MATAA-VIGLSA-GKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFG 528
           MATAA V+GLS+ GKRLLSSS  YSDITDKL   +D+G    Q S  KNV  A+KSS+  
Sbjct: 1   MATAAAVVGLSSTGKRLLSSSLSYSDITDKLFYLNDHGFVNCQLSSTKNVVTARKSSSKY 60

Query: 527 LN--FPS-NRHTEH-INALKEHVDASSTPA--TDAWLQRSNFIEEGSSDIESSVEVLLLL 366
            N  FPS NRH E  I AL+EH D +S P+  T   L+    +EE SSD+E SVE LLLL
Sbjct: 61  SNSRFPSSNRHHEQSIRALQEHADTASAPSSTTHQLLEEYTDLEEESSDLEYSVEALLLL 120

Query: 365 QKSMLEKQWNLSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPP 186
           QKS+LEKQWNLSFE++       D    K  VT                +  +N+ E+ P
Sbjct: 121 QKSLLEKQWNLSFEKKLSTRKITDN---KIPVTCSGVSARQRRMSTKRKAFSKNTSELQP 177

Query: 185 GRRKHFRSIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKER 6
              K+ R+ +SP LLQ+R  GYVKGVTS+ LLTH EVV LSKKIK GLS+E+HKSRLKE+
Sbjct: 178 STNKYCRATISPSLLQNRTSGYVKGVTSDHLLTHTEVVRLSKKIKIGLSVEEHKSRLKEK 237

Query: 5   L 3
           L
Sbjct: 238 L 238


>ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [Amborella trichopoda]
           gi|548832002|gb|ERM94804.1| hypothetical protein
           AMTR_s00011p00266100 [Amborella trichopoda]
          Length = 497

 Score =  199 bits (507), Expect = 1e-48
 Identities = 117/233 (50%), Positives = 152/233 (65%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           MATAAVIG+S GKRLL SS   SDI ++++P +D+G TQ+     K+  ++KKS  FG N
Sbjct: 1   MATAAVIGISTGKRLLRSSFLASDI-ERVIPIYDFGATQFPAVSHKSFIVSKKSPGFGPN 59

Query: 521 FPSNRHTEHINALKEHVDASSTPATDAWLQRSNFIEEGSSDIESSVEVLLLLQKSMLEKQ 342
            PSNR T++INA+KEHV+A S+ +       S+   E + D ESS+E L+LLQKSMLEKQ
Sbjct: 60  SPSNRQTQYINAIKEHVNAPSSSS-------SSSTTEANPDFESSLEALILLQKSMLEKQ 112

Query: 341 WNLSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRKHFRS 162
           WNLSF+Q        +E  KK  V                  L+Q +  V   R+K    
Sbjct: 113 WNLSFDQAGTSTDLCEESCKKLGVISSGASARQRRNSLRRP-LNQRAGTVLVRRKKQATP 171

Query: 161 IVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
           IVSPELLQ   +GYVKG++++ LL+HAEVVHLS KI+AGLSLE+HKSRLKE+L
Sbjct: 172 IVSPELLQGHFRGYVKGISNDSLLSHAEVVHLSWKIRAGLSLEEHKSRLKEKL 224


>ref|XP_007131471.1| hypothetical protein PHAVU_011G016400g [Phaseolus vulgaris]
           gi|561004471|gb|ESW03465.1| hypothetical protein
           PHAVU_011G016400g [Phaseolus vulgaris]
          Length = 504

 Score =  198 bits (503), Expect = 3e-48
 Identities = 126/238 (52%), Positives = 152/238 (63%), Gaps = 5/238 (2%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           MA+AAVIGLS GKRLLSSS +YSDI +KL    D+G T YQ    K+V +AKKSSN+   
Sbjct: 1   MASAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVSTKSVIVAKKSSNYTPT 60

Query: 521 FPS-NRHTEHINALKEHVDASSTPATDAWLQ--RSNFIEEGSSDIESSVEVLLLLQKSML 351
           FP+ NR  + I  LKE VD ++T A DAW Q   SN +E  SS++  SVE LLLLQKSML
Sbjct: 61  FPAPNRQNQSIKVLKEIVDDAATVA-DAWFQSLSSNDLEVESSEMGYSVEALLLLQKSML 119

Query: 350 EKQWNLSFEQRRIMGVPGDER--LKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRR 177
           EKQW+LSFE   +      E+   K   VT                   +    V  G  
Sbjct: 120 EKQWSLSFEGEGVTEHSSKEKNCRKVAAVTCSGVSARQRRMNA------KRKTAVKTGGA 173

Query: 176 KHFRSIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
              +S +SPELLQ+RLKGYVKGV SEELL+HA+VV LS+KIK GLSLE+HKSR+KERL
Sbjct: 174 VQLKSKISPELLQNRLKGYVKGVVSEELLSHAQVVSLSEKIKVGLSLEEHKSRMKERL 231


>ref|XP_002319237.2| hypothetical protein POPTR_0013s07290g [Populus trichocarpa]
           gi|550325184|gb|EEE95160.2| hypothetical protein
           POPTR_0013s07290g [Populus trichocarpa]
          Length = 499

 Score =  194 bits (492), Expect = 6e-47
 Identities = 116/235 (49%), Positives = 149/235 (63%), Gaps = 2/235 (0%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           MATA+ IGL+ GKRLLSSS Y+SD+T+KL   +D+G+  YQ +  K+V +AKKSS +G +
Sbjct: 2   MATASFIGLTTGKRLLSSSFYFSDLTEKLSNVNDHGVAHYQITTTKSVIVAKKSSKYGPS 61

Query: 521 FPSNRHTEHIN-ALKEHVDASSTPATDA-WLQRSNFIEEGSSDIESSVEVLLLLQKSMLE 348
           FPS+    H N ALKE +D +S  +T A W +  +  EE SS ++ SVE L+LLQKSMLE
Sbjct: 62  FPSSYRNPHSNKALKELIDTASASSTVATWFKTLDDFEEESSVLDYSVEALILLQKSMLE 121

Query: 347 KQWNLSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRKHF 168
           KQWNLSFE          +  KK  VT                + +Q+           F
Sbjct: 122 KQWNLSFESINSSDSKIKKSNKKIPVTCSGVSARQRRLNNKRKNQNQSK----------F 171

Query: 167 RSIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
            S +SP+LL +RLKGYVKGV S+E+L H EVV LS+ I+AGLSLEDHKS LKERL
Sbjct: 172 MSDISPDLLLNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSLEDHKSSLKERL 226


>gb|AEO45243.1| sigma factor [Nicotiana tabacum]
          Length = 264

 Score =  184 bits (467), Expect = 5e-44
 Identities = 111/231 (48%), Positives = 136/231 (58%), Gaps = 2/231 (0%)
 Frame = -2

Query: 689 AVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLNFPSN 510
           A+IGLSAG R+LSSS YYSD+T+K     D+ L  +     KNV  AK SSN+  ++ SN
Sbjct: 3   AIIGLSAGNRILSSSFYYSDLTEKFC-VSDHALPCHHFPSPKNVINAKNSSNYSPSYVSN 61

Query: 509 RHTEHINALKEHVDASSTPATDA--WLQRSNFIEEGSSDIESSVEVLLLLQKSMLEKQWN 336
           R  + + ALKEHVD +S   +D   W+Q    ++ GS   E SVEVLLLLQKSMLEKQWN
Sbjct: 62  RKKQSVKALKEHVDIASNRDSDTEPWVQMFKQLQNGSCSEEDSVEVLLLLQKSMLEKQWN 121

Query: 335 LSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRKHFRSIV 156
           LS E+        +   KK Q T                 L   +        K  RS++
Sbjct: 122 LSAEKAM---TNENNCKKKMQTTCSGTSARRRRMDTRKRDLLPKNSATSDSSNKRLRSVI 178

Query: 155 SPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
            PELLQ+R KGY+ GV  +ELLTH EVV LSKKIK GL LE+ KSRLKERL
Sbjct: 179 GPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERL 229


>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
          Length = 502

 Score =  181 bits (460), Expect = 3e-43
 Identities = 110/231 (47%), Positives = 136/231 (58%), Gaps = 2/231 (0%)
 Frame = -2

Query: 689 AVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLNFPSN 510
           A+IGLSAG R+LSSS YYS +T+K     D+ L  +     KNV  AK SSN+  ++ SN
Sbjct: 3   AIIGLSAGNRILSSSFYYSVLTEKFC-VSDHALPCHHFPSPKNVINAKNSSNYSPSYVSN 61

Query: 509 RHTEHINALKEHVDASSTPATDA--WLQRSNFIEEGSSDIESSVEVLLLLQKSMLEKQWN 336
           R  + + ALKEHVD +S   +D   W+Q    ++ GS   E SVEVLLLLQKSMLEKQWN
Sbjct: 62  RKKQSVKALKEHVDIASNRDSDTEPWVQMFKQLQNGSCSEEDSVEVLLLLQKSMLEKQWN 121

Query: 335 LSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSIEVPPGRRKHFRSIV 156
           LS E+        +   KK Q+T                 L   +        K  RS++
Sbjct: 122 LSAEKAM---TNENNCKKKMQITCSGTSARRRRMDTRKRDLLPKNSATSDSSSKRLRSVI 178

Query: 155 SPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSRLKERL 3
            PELLQ+R KGY+ GV  +ELLTH EVV LSKKIK GL LE+ KSRLKERL
Sbjct: 179 GPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERL 229


>ref|XP_004499502.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Cicer
           arietinum] gi|502126947|ref|XP_004499503.1| PREDICTED:
           RNA polymerase sigma factor sigA-like isoform X2 [Cicer
           arietinum]
          Length = 513

 Score =  181 bits (458), Expect = 5e-43
 Identities = 119/245 (48%), Positives = 149/245 (60%), Gaps = 12/245 (4%)
 Frame = -2

Query: 701 MATAAVIGLSAGKRLLSSSSYYSDITDKLLPFHDYGLTQYQTSLAKNVTIAKKSSNFGLN 522
           MATAAVIGLS GKRLLSSS +YSD+ +K     D+G +QY    +K+V  +KKSS     
Sbjct: 1   MATAAVIGLSGGKRLLSSSYHYSDVIEKFYHSCDFGSSQYHLPPSKSVIFSKKSSKCAPT 60

Query: 521 FP-SNRHTEHINALKEHV---DASSTPATDA--WLQ---RSNF---IEEGSSDIESSVEV 378
           F  SNR    I ALKEHV   D + T   ++  W+Q    SN    +E  +SDI  SV+ 
Sbjct: 61  FSASNRQNHSIKALKEHVVVVDGAPTSIANSKPWIQGCSNSNNDLGLEVETSDIGYSVDT 120

Query: 377 LLLLQKSMLEKQWNLSFEQRRIMGVPGDERLKKFQVTXXXXXXXXXXXXXXXXSLDQNSI 198
           LLL+QKSMLEKQW LSFE   ++         + +VT                   +  I
Sbjct: 121 LLLMQKSMLEKQWCLSFESE-VLTENSTRAKSRRKVTVTCSGMSARQRRTNT----KKKI 175

Query: 197 EVPPGRRKHFRSIVSPELLQSRLKGYVKGVTSEELLTHAEVVHLSKKIKAGLSLEDHKSR 18
               G  +  RS +SPELLQ+RLKGYVKG+ SEELL+HA+VV LS+KIKAGLSL++HKSR
Sbjct: 176 TSKSGYARKLRSTISPELLQNRLKGYVKGIVSEELLSHAQVVKLSQKIKAGLSLDEHKSR 235

Query: 17  LKERL 3
           LKERL
Sbjct: 236 LKERL 240