BLASTX nr result
ID: Akebia24_contig00047238
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia24_contig00047238
(358 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group... 57 8e-07
emb|CAE03643.1| OSJNBa0060N03.8 [Oryza sativa Japonica Group] 57 8e-07
emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa Japonica Group] 59 9e-07
gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa Japonica Group] 59 9e-07
gb|ABA94321.1| retrotransposon protein, putative, unclassified [... 57 1e-06
gb|ABA95230.1| retrotransposon protein, putative, unclassified [... 57 2e-06
gb|ABA95797.1| retrotransposon protein, putative, unclassified [... 55 2e-06
gb|AAM91874.1| putative copia-like polyprotein [Oryza sativa Jap... 57 3e-06
gb|AAP54332.2| retrotransposon protein, putative, unclassified [... 57 3e-06
gb|ABA93730.1| retrotransposon protein, putative, unclassified [... 57 4e-06
>gb|AAP21414.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711651|gb|ABF99446.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1393
Score = 56.6 bits (135), Expect(2) = 8e-07
Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Frame = -1
Query: 178 DLEYLHFFLGIEVARSTRPS-LS*RKYALDLLKD--MLGCRFAHCSMDPNHALLINEGDP 8
DL L +FLGIE+ARS++ LS RKY LDLL D MLGCR + +D NH L GDP
Sbjct: 1106 DLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTDTGMLGCRASTTPIDRNHQLCAQSGDP 1165
Query: 7 L 5
+
Sbjct: 1166 V 1166
Score = 21.9 bits (45), Expect(2) = 8e-07
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 308 VIHTSLGSHQTILLVYVXXXXXXXXDPTYITCVK 207
V + G+H TIL VYV D I C+K
Sbjct: 1062 VFYKHRGTHITILAVYVDDIVITGDDVEEIRCLK 1095
>emb|CAE03643.1| OSJNBa0060N03.8 [Oryza sativa Japonica Group]
Length = 343
Score = 56.6 bits (135), Expect(2) = 8e-07
Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Frame = -1
Query: 178 DLEYLHFFLGIEVARSTRPS-LS*RKYALDLLKD--MLGCRFAHCSMDPNHALLINEGDP 8
DL L +FLGIE+ARS++ LS RKY LDLL D MLGCR + +D NH L GDP
Sbjct: 56 DLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTDTGMLGCRASTTPIDRNHQLCAQSGDP 115
Query: 7 L 5
+
Sbjct: 116 V 116
Score = 21.9 bits (45), Expect(2) = 8e-07
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 308 VIHTSLGSHQTILLVYVXXXXXXXXDPTYITCVK 207
V + G+H TIL VYV D I C+K
Sbjct: 12 VFYKHRGTHITILAVYVDDIVITGDDVEEIRCLK 45
>emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa Japonica Group]
Length = 1262
Score = 58.5 bits (140), Expect = 9e-07
Identities = 35/61 (57%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Frame = -1
Query: 178 DLEYLHFFLGIEVARSTRPS-LS*RKYALDLLKD--MLGCRFAHCSMDPNHALLINEGDP 8
DL L +FLGIE+ARS R LS RKYALDLL D MLGCR A +D NH L G+P
Sbjct: 975 DLGQLKYFLGIEIARSPRGIVLSQRKYALDLLSDTGMLGCRPASTPVDQNHKLCAESGNP 1034
Query: 7 L 5
+
Sbjct: 1035 V 1035
>gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa Japonica Group]
Length = 1472
Score = 58.5 bits (140), Expect = 9e-07
Identities = 35/61 (57%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Frame = -1
Query: 178 DLEYLHFFLGIEVARSTRPS-LS*RKYALDLLKD--MLGCRFAHCSMDPNHALLINEGDP 8
DL L +FLGIE+ARS R LS RKYALDLL D MLGCR A +D NH L G+P
Sbjct: 1185 DLGQLKYFLGIEIARSPRGIVLSQRKYALDLLSDTGMLGCRPASTPVDQNHKLCAESGNP 1244
Query: 7 L 5
+
Sbjct: 1245 V 1245
>gb|ABA94321.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1133
Score = 56.6 bits (135), Expect(2) = 1e-06
Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Frame = -1
Query: 178 DLEYLHFFLGIEVARSTRPS-LS*RKYALDLLKD--MLGCRFAHCSMDPNHALLINEGDP 8
DL L +FLGIE+ARS++ LS RKY LDLL D MLGCR + +D NH L GDP
Sbjct: 965 DLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTDIGMLGCRASTTPIDRNHQLCAQSGDP 1024
Query: 7 L 5
+
Sbjct: 1025 V 1025
Score = 21.6 bits (44), Expect(2) = 1e-06
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 308 VIHTSLGSHQTILLVYVXXXXXXXXDPTYITCVK 207
+ + G+H TIL VYV D I C+K
Sbjct: 921 IFYKHRGTHITILAVYVDDIVITGDDVEEIRCLK 954
>gb|ABA95230.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 936
Score = 57.4 bits (137), Expect = 2e-06
Identities = 34/61 (55%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Frame = -1
Query: 178 DLEYLHFFLGIEVARSTRPS-LS*RKYALDLLKD--MLGCRFAHCSMDPNHALLINEGDP 8
DL L +FLGIE+ARS R LS RKY LDLL D MLGCR A ++ NH L GDP
Sbjct: 649 DLGQLKYFLGIEIARSPRGIVLSQRKYVLDLLSDTGMLGCRPASTPIEQNHKLCAESGDP 708
Query: 7 L 5
+
Sbjct: 709 V 709
>gb|ABA95797.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1588
Score = 55.1 bits (131), Expect(2) = 2e-06
Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Frame = -1
Query: 178 DLEYLHFFLGIEVARSTRPS-LS*RKYALDLLKD--MLGCRFAHCSMDPNHALLINEGDP 8
DL L +FLGIEVARS++ LS RKY LDLL + MLGCR + +D NH L GDP
Sbjct: 1301 DLGPLRYFLGIEVARSSKGIVLSQRKYVLDLLTETGMLGCRTSATPIDRNHQLSAQSGDP 1360
Query: 7 L 5
+
Sbjct: 1361 V 1361
Score = 21.9 bits (45), Expect(2) = 2e-06
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 308 VIHTSLGSHQTILLVYVXXXXXXXXDPTYITCVK 207
V + G+H TIL VYV D I C+K
Sbjct: 1257 VFYRHRGAHITILAVYVDDIVITGDDVEEIKCLK 1290
>gb|AAM91874.1| putative copia-like polyprotein [Oryza sativa Japonica Group]
Length = 894
Score = 57.0 bits (136), Expect = 3e-06
Identities = 34/61 (55%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Frame = -1
Query: 178 DLEYLHFFLGIEVARSTRPS-LS*RKYALDLLKD--MLGCRFAHCSMDPNHALLINEGDP 8
DL L +FLGIE+ARS R LS RKY LDLL D MLGCR A ++ NH L GDP
Sbjct: 607 DLGQLKYFLGIEIARSPRGIVLSQRKYVLDLLSDTGMLGCRPASTLIEQNHKLCAESGDP 666
Query: 7 L 5
+
Sbjct: 667 V 667
>gb|AAP54332.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 822
Score = 57.0 bits (136), Expect = 3e-06
Identities = 34/61 (55%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Frame = -1
Query: 178 DLEYLHFFLGIEVARSTRPS-LS*RKYALDLLKD--MLGCRFAHCSMDPNHALLINEGDP 8
DL L +FLGIE+ARS R LS RKY LDLL D MLGCR A ++ NH L GDP
Sbjct: 535 DLGQLKYFLGIEIARSPRGIVLSQRKYVLDLLSDTGMLGCRPASTLIEQNHKLCAESGDP 594
Query: 7 L 5
+
Sbjct: 595 V 595
>gb|ABA93730.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 656
Score = 56.6 bits (135), Expect = 4e-06
Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Frame = -1
Query: 178 DLEYLHFFLGIEVARSTRPS-LS*RKYALDLLKD--MLGCRFAHCSMDPNHALLINEGDP 8
DL L +FLGIE+ARS++ LS RKY LDLL D MLGCR + +D NH L GDP
Sbjct: 369 DLGPLRYFLGIEIARSSKGIVLSQRKYVLDLLTDTGMLGCRASTTPIDRNHQLCAQSGDP 428
Query: 7 L 5
+
Sbjct: 429 V 429