BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00031335
         (1432 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containi...   474   e-131
ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containi...   473   e-131
ref|XP_007013367.1| Tetratricopeptide repeat (TPR)-like superfam...   463   e-128
ref|XP_004304765.1| PREDICTED: pentatricopeptide repeat-containi...   463   e-128
ref|XP_007030476.1| Tetratricopeptide repeat-like superfamily pr...   462   e-127
ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containi...   462   e-127
ref|XP_002324235.2| pentatricopeptide repeat-containing family p...   460   e-127
gb|EYU45574.1| hypothetical protein MIMGU_mgv1a001941mg [Mimulus...   458   e-126
ref|XP_007206274.1| hypothetical protein PRUPE_ppa016070mg [Prun...   458   e-126
gb|AEP33770.1| organelle transcript processing 82, partial [Raph...   458   e-126
ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containi...   456   e-126
ref|XP_007203470.1| hypothetical protein PRUPE_ppa024598mg [Prun...   455   e-125
ref|XP_004241167.1| PREDICTED: pentatricopeptide repeat-containi...   455   e-125
ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containi...   455   e-125
gb|AEP33771.1| organelle transcript processing 82, partial [Thla...   454   e-125
ref|XP_006350917.1| PREDICTED: pentatricopeptide repeat-containi...   453   e-125
ref|XP_006306854.1| hypothetical protein CARUB_v10008399mg [Caps...   453   e-125
gb|AEP33760.1| organelle transcript processing 82, partial [Caps...   453   e-125
gb|AEP33758.1| organelle transcript processing 82, partial [Barb...   453   e-125
emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]   453   e-125

>ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like
            [Cucumis sativus] gi|449529868|ref|XP_004171920.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  474 bits (1220), Expect = e-131
 Identities = 221/478 (46%), Positives = 332/478 (69%), Gaps = 2/478 (0%)
 Frame = +2

Query: 5    RNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSE--DEV 178
            +++VSWNA+I+G++Q G++ EAL +F  M K  + P+ +TI+SV+SA + +N  +  + +
Sbjct: 224  KDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSM 283

Query: 179  EQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRP 358
               +    L +++ +  A++ +Y+K G +  AR +FD++ E+D+++WN MI GY+     
Sbjct: 284  RSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSY 343

Query: 359  AEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFLE 538
             EA+ LFR M +    GV+P  +T +SI+ SCA +GA+ LG+W+HAYI KN   +   L 
Sbjct: 344  KEALALFREMLAS---GVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLS 400

Query: 539  TSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGVM 718
            TSLID+YAKCG++  +R++F GM  + LASWNAMI GLA+HG+ D+AF++FS M  +G+ 
Sbjct: 401  TSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIE 460

Query: 719  PNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFE 898
            PNEITF+ +L+A  H GL   G   F  M   Y I P+ +HYGC++DLLGRAG  E+A  
Sbjct: 461  PNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAES 520

Query: 899  FVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYASVGK 1078
             ++NM ++PD  +WG+LL ACR H  +EL E  A RL EL+P + G YVLLSN+YA  GK
Sbjct: 521  LLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGK 580

Query: 1079 WRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKRIKP 1258
            W DV ++R R+  + +KK PGC+ +E++ VVHEF+ GD+ HP+ ++IY   +E+ +++K 
Sbjct: 581  WDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKV 640

Query: 1259 MGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDCH 1432
             G+V DT  +L ++DEE +E A+  HSEKLA+ F LIS+KP TPIRI+KNLR+C +CH
Sbjct: 641  FGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCH 698



 Score =  120 bits (301), Expect = 1e-24
 Identities = 76/269 (28%), Positives = 132/269 (49%), Gaps = 31/269 (11%)
 Frame = +2

Query: 239 SLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKP 418
           S  ++ G I  A  +F+ I E ++  WN+MI G S +  PA A+  F RM      GV+P
Sbjct: 71  SAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYS---GVEP 127

Query: 419 DGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDL------- 577
           +  T   ++ SCA++ +   G+ +HA++ K     D+F+ TSLI+MYA+ G++       
Sbjct: 128 NSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVF 187

Query: 578 ------------------------DRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFK 685
                                   DR+R++F  M  +D+ SWNAMI G A  G+  EA  
Sbjct: 188 DQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALL 247

Query: 686 IFSMMERNGVMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLL 865
           +F  M +  V PNE T +++L+A +       G  +   ++   G+   ++    ++D+ 
Sbjct: 248 LFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIE-DRGLCSNLKLVNALIDMY 306

Query: 866 GRAGRIEDAFEFVRNMPIEPDKVVWGALL 952
            + G ++ A E   +M +E D + W  ++
Sbjct: 307 SKCGDLQTARELFDDM-LERDVISWNVMI 334


>ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
            [Vitis vinifera]
          Length = 698

 Score =  473 bits (1217), Expect = e-131
 Identities = 222/479 (46%), Positives = 340/479 (70%), Gaps = 2/479 (0%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSG-ANLSEDE- 175
            ERN+ +WN++ +G++++G  +E + +F +ML+  I+ D  T++SV++A    A+L   E 
Sbjct: 187  ERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEW 246

Query: 176  VEQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQR 355
            + + V    L  + ++ T+++ +YAK G++D ARR+FD++  +D+V W+AMI+GYSQ  R
Sbjct: 247  INRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASR 306

Query: 356  PAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFL 535
              EA++LF  MQ      + P+ +TMVSI++SCA +GAL  G+WVH +I+K R++L + L
Sbjct: 307  CREALDLFHEMQK---ANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTL 363

Query: 536  ETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGV 715
             T+L+D YAKCG ++ S  +F  M  +++ SW  +I+GLA +G+G +A + F +M    V
Sbjct: 364  GTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNV 423

Query: 716  MPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAF 895
             PN++TFI +L+A SH GL  +G  LF  M   +GI PRIEHYGC+VD+LGRAG IE+AF
Sbjct: 424  EPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAF 483

Query: 896  EFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYASVG 1075
            +F++NMPI+P+ V+W  LL++C+ H+N+E+ EE+  +L+ L+P H G+Y+LLSN+YASVG
Sbjct: 484  QFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVG 543

Query: 1076 KWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKRIK 1255
            +W D  KVR  M+ + +KKTPGCS +EL+GV+HEF A D  H + +EIY A ++++K+IK
Sbjct: 544  RWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIK 603

Query: 1256 PMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDCH 1432
              GYVP+T     + +E+D+E ++  HSEKLA+ F LI S P T IRI KNLR+C DCH
Sbjct: 604  SAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCH 662



 Score =  178 bits (452), Expect = 5e-42
 Identities = 101/336 (30%), Positives = 189/336 (56%), Gaps = 3/336 (0%)
 Frame = +2

Query: 17   SWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGAN-LSEDE-VEQIV 190
            ++N +I GF+      EA+ +F +M +  ++PD  T   ++   S    LSE E +  ++
Sbjct: 91   AYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALI 150

Query: 191  GFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAI 370
                  +   V   ++ +YA  G ++ ARR+FDE+ E+++ TWN+M AGY+++    E +
Sbjct: 151  MKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVV 210

Query: 371  ELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLI 550
            +LF  M     + ++ D VT+VS++T+C ++  L LGEW++ Y+E+  ++ +  L TSL+
Sbjct: 211  KLFHEMLE---LDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLV 267

Query: 551  DMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEI 730
            DMYAKCG +D +RR+F  M  RD+ +W+AMI G +   +  EA  +F  M++  + PNEI
Sbjct: 268  DMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEI 327

Query: 731  TFIALLTASS-HGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVR 907
            T +++L++ +  G L +   V F + + +  +   +     ++D   + G +E + E   
Sbjct: 328  TMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLG--TALMDFYAKCGSVESSIEVFG 385

Query: 908  NMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVE 1015
             MP++ + + W  L+    S+   + A E  + ++E
Sbjct: 386  KMPVK-NVLSWTVLIQGLASNGQGKKALEYFYLMLE 420



 Score =  116 bits (291), Expect = 2e-23
 Identities = 87/282 (30%), Positives = 138/282 (48%), Gaps = 9/282 (3%)
 Frame = +2

Query: 263  IDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSI 442
            +D A  IF +I E D   +N MI G++  Q P EAI LF+ M       V+PD  T   I
Sbjct: 74   MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHEN---SVQPDEFTFPCI 130

Query: 443  ITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRDL 622
            +  C+++ AL  GE +HA I K       F++ +LI MYA CG+++ +RR+F  M+ R++
Sbjct: 131  LKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNV 190

Query: 623  ASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALLTASSHGGLASKGLVLFDL 802
             +WN+M  G    G  +E  K+F  M    +  +E+T +++LTA   G LA   L  +  
Sbjct: 191  RTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTAC--GRLADLELGEWIN 248

Query: 803  MQI-QYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVRNMPIEPDKVVWGALLS----ACRS 967
              + + G+         +VD+  + G+++ A      M    D V W A++S    A R 
Sbjct: 249  RYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMD-RRDVVAWSAMISGYSQASRC 307

Query: 968  HQNLELAEEAAHRLVELDPRHDGNYVLLSNVYA----SVGKW 1081
             + L+L  E   +   +DP       +LS+         GKW
Sbjct: 308  REALDLFHEM--QKANIDPNEITMVSILSSCAVLGALETGKW 347


>ref|XP_007013367.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
            [Theobroma cacao] gi|508783730|gb|EOY30986.1|
            Tetratricopeptide repeat (TPR)-like superfamily protein,
            putative [Theobroma cacao]
          Length = 847

 Score =  463 bits (1192), Expect = e-128
 Identities = 217/479 (45%), Positives = 335/479 (69%), Gaps = 3/479 (0%)
 Frame = +2

Query: 5    RNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSE--DEV 178
            R++VSWNA+I+G++Q GQ++EAL+ F +M+   + P+ +T++SV+SA + +   E    V
Sbjct: 283  RDVVSWNAMIAGYAQTGQHEEALAFFEEMIGANVVPNESTLVSVLSACAQSGSLELGTWV 342

Query: 179  EQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRP 358
               +    L ++I ++ A++ +Y+K G +D A  +F+ + ++D+++WN MI GY+     
Sbjct: 343  RSWINEHGLGSNIHLANALIDMYSKCGDLDTAFDLFEGLQQRDVISWNVMIGGYTHMSYY 402

Query: 359  AEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKN-RIELDLFL 535
             EA+ LFRRM       ++P  VT +S++ +CA +GAL LG+W+HAYI+KN +   ++ L
Sbjct: 403  KEALGLFRRMLRS---NIEPSDVTFLSVLPACANLGALDLGKWIHAYIDKNFQNSTNISL 459

Query: 536  ETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGV 715
             TSLIDMYAKCG ++ ++++F GM  ++LASWNAMI GLA+HG  D+A ++FS M   G+
Sbjct: 460  WTSLIDMYAKCGSIEAAQQVFNGMEQKNLASWNAMISGLAMHGLADKALELFSQMMGGGL 519

Query: 716  MPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAF 895
             P++ITF+ +L+A +H GL   G   F  M  +Y I P ++HYGC+V+LLGRAG  ++A 
Sbjct: 520  KPDDITFVGVLSACTHAGLLDLGRQYFSSMVQEYAISPDLQHYGCMVNLLGRAGLFDEAE 579

Query: 896  EFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYASVG 1075
              ++NM ++PD  +WG+LL ACR H+ +EL E  A RL+EL+P + G YVLLSN+YA  G
Sbjct: 580  ALIQNMEMKPDGAIWGSLLGACRVHKRVELGESVAQRLLELEPDNPGAYVLLSNIYAGAG 639

Query: 1076 KWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKRIK 1255
            +W DV ++R  +  + +KK PGCS++E++ VVHEF+  D+ HPR +EIY   +E+   ++
Sbjct: 640  RWDDVARIRTLLNNKGMKKVPGCSSIEVDSVVHEFLVSDKVHPRCKEIYDMLNEVDTLLE 699

Query: 1256 PMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDCH 1432
              G+VPDT  ++R++DEE +E A+  HSEKLA+ F LIS+KP T IRIVKNLR+CG+CH
Sbjct: 700  KAGFVPDTSEVIRDMDEEWKEGALSHHSEKLAIAFGLISTKPGTTIRIVKNLRVCGNCH 758



 Score =  178 bits (452), Expect = 5e-42
 Identities = 110/357 (30%), Positives = 184/357 (51%), Gaps = 34/357 (9%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVE 181
            E N V WN +I GFS +      L  + +M+ + I P++ T   V+ + +    S  E +
Sbjct: 150  EPNQVIWNTMIRGFSLSSSPGLTLEFYVKMIWSGIVPNSYTFPFVLKSCA-KTASTQEGK 208

Query: 182  QIVG-------------FASLANSISVS---------------------TAILSLYAKLG 259
            QI G               SL N  + +                     TA+++ Y  +G
Sbjct: 209  QIHGQVLKLGLESDAFVHTSLINMYAQNGEFGNARLVFDKSHLRDTVSYTALITGYVSIG 268

Query: 260  RIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVS 439
             +++AR++FDEIP +D+V+WNAMIAGY+Q  +  EA+  F  M    G  V P+  T+VS
Sbjct: 269  YMENARKLFDEIPIRDVVSWNAMIAGYAQTGQHEEALAFFEEM---IGANVVPNESTLVS 325

Query: 440  IITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRD 619
            ++++CAQ G+L LG WV ++I ++ +  ++ L  +LIDMY+KCGDLD +  +F+G+  RD
Sbjct: 326  VLSACAQSGSLELGTWVRSWINEHGLGSNIHLANALIDMYSKCGDLDTAFDLFEGLQQRD 385

Query: 620  LASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALLTASSHGGLASKGLVLFD 799
            + SWN MI G        EA  +F  M R+ + P+++TF+++L A ++ G    G  +  
Sbjct: 386  VISWNVMIGGYTHMSYYKEALGLFRRMLRSNIEPSDVTFLSVLPACANLGALDLGKWIHA 445

Query: 800  LMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVRNMPIEPDKVVWGALLSACRSH 970
             +   +     I  +  ++D+  + G IE A +    M  + +   W A++S    H
Sbjct: 446  YIDKNFQNSTNISLWTSLIDMYAKCGSIEAAQQVFNGME-QKNLASWNAMISGLAMH 501



 Score =  123 bits (308), Expect = 2e-25
 Identities = 69/228 (30%), Positives = 133/228 (58%), Gaps = 8/228 (3%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVE 181
            +R+++SWN +I G++      EAL +F +ML++ I+P + T LSV+ A   ANL   ++ 
Sbjct: 383  QRDVISWNVMIGGYTHMSYYKEALGLFRRMLRSNIEPSDVTFLSVLPAC--ANLGALDLG 440

Query: 182  QIV------GFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYS 343
            + +       F +  N IS+ T+++ +YAK G I+ A+++F+ + +K++ +WNAMI+G +
Sbjct: 441  KWIHAYIDKNFQNSTN-ISLWTSLIDMYAKCGSIEAAQQVFNGMEQKNLASWNAMISGLA 499

Query: 344  QNQRPAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLG-EWVHAYIEKNRIE 520
             +    +A+ELF +M    G G+KPD +T V ++++C   G L LG ++  + +++  I 
Sbjct: 500  MHGLADKALELFSQMM---GGGLKPDDITFVGVLSACTHAGLLDLGRQYFSSMVQEYAIS 556

Query: 521  LDLFLETSLIDMYAKCGDLDRSRRMFQGMTTR-DLASWNAMIKGLAIH 661
             DL     ++++  + G  D +  + Q M  + D A W +++    +H
Sbjct: 557  PDLQHYGCMVNLLGRAGLFDEAEALIQNMEMKPDGAIWGSLLGACRVH 604



 Score =  110 bits (274), Expect = 2e-21
 Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 31/263 (11%)
 Frame = +2

Query: 257 GRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMV 436
           G +  A  +F+ I E + V WN MI G+S +  P   +E + +M      G+ P+  T  
Sbjct: 136 GDLPYALLLFESIDEPNQVIWNTMIRGFSLSSSPGLTLEFYVKM---IWSGIVPNSYTFP 192

Query: 437 SIITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGD-------------- 574
            ++ SCA+  +   G+ +H  + K  +E D F+ TSLI+MYA+ G+              
Sbjct: 193 FVLKSCAKTASTQEGKQIHGQVLKLGLESDAFVHTSLINMYAQNGEFGNARLVFDKSHLR 252

Query: 575 -----------------LDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMME 703
                            ++ +R++F  +  RD+ SWNAMI G A  G+ +EA   F  M 
Sbjct: 253 DTVSYTALITGYVSIGYMENARKLFDEIPIRDVVSWNAMIAGYAQTGQHEEALAFFEEMI 312

Query: 704 RNGVMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRI 883
              V+PNE T +++L+A +  G    G  +   +  ++G+   I     ++D+  + G +
Sbjct: 313 GANVVPNESTLVSVLSACAQSGSLELGTWVRSWIN-EHGLGSNIHLANALIDMYSKCGDL 371

Query: 884 EDAFEFVRNMPIEPDKVVWGALL 952
           + AF+    +  + D + W  ++
Sbjct: 372 DTAFDLFEGLQ-QRDVISWNVMI 393



 Score = 62.8 bits (151), Expect = 4e-07
 Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
 Frame = +2

Query: 2   ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVE 181
           ++NL SWNA+ISG + +G  D+AL +FSQM+   +KPD+ T + V+SA + A L +   +
Sbjct: 485 QKNLASWNAMISGLAMHGLADKALELFSQMMGGGLKPDDITFVGVLSACTHAGLLDLGRQ 544

Query: 182 QIVGFASLANSISVST------AILSLYAKLGRIDDARRIFDEIPEK-DIVTWNAMIAGY 340
               F+S+    ++S        +++L  + G  D+A  +   +  K D   W +++   
Sbjct: 545 Y---FSSMVQEYAISPDLQHYGCMVNLLGRAGLFDEAEALIQNMEMKPDGAIWGSLLGAC 601

Query: 341 SQNQR 355
             ++R
Sbjct: 602 RVHKR 606


>ref|XP_004304765.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like
            [Fragaria vesca subsp. vesca]
          Length = 684

 Score =  463 bits (1191), Expect = e-128
 Identities = 219/481 (45%), Positives = 339/481 (70%), Gaps = 4/481 (0%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVE 181
            E+++VSW  +I+G  +  + +E + +F +ML+ R  P+  T+LS++  +   N+   E+ 
Sbjct: 173  EKSVVSWTTMIAGCIRCNEVEEGVKLFKRMLEERKFPNEITVLSLI--IESGNVGALELG 230

Query: 182  QIVGFASLAN----SISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQN 349
            + +    L N    S++++TA++ +Y K G  + AR +FD I EKD++ W+AMI+ YS+ 
Sbjct: 231  KWLHAYVLRNGFVMSLALATALVDMYGKCGEAEYARAVFDSIEEKDVMIWSAMISAYSRA 290

Query: 350  QRPAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDL 529
             +  +A ELF RM+     GV+P+ VTMVS+I+ C ++GAL LG+WVH+YI + RI++D+
Sbjct: 291  NQTNQASELFARMKDS---GVRPNQVTMVSLISLCGEVGALDLGKWVHSYINQQRIDVDV 347

Query: 530  FLETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERN 709
             L T+L+DMYAKCG++D + R+F     RD   WN MI GLA+HG G +A ++F  M+R 
Sbjct: 348  ILRTALVDMYAKCGEIDVALRLFSEAINRDSQMWNVMITGLAMHGCGKQALELFEEMQRQ 407

Query: 710  GVMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIED 889
            GV PN+ITFI LL A SH GL + G  +F+ M   + + P++EHYGC+VDLLGRAG++++
Sbjct: 408  GVKPNDITFIGLLHACSHAGLVADGKKIFEKMVHDFSLAPKVEHYGCMVDLLGRAGKLDE 467

Query: 890  AFEFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYAS 1069
            A + +++MP+EP+ +VWG+LL+AC++H++  LAE AA +L++L+P++ G  VL+SN+YA+
Sbjct: 468  AHKLIKSMPLEPNTIVWGSLLAACKTHKSPNLAEVAARQLLKLEPQNCGYNVLMSNIYAA 527

Query: 1070 VGKWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKR 1249
              KW DV  VR  M+ Q  KK PG S++E+ G VH+F+ GD++HP+ ++IY    E+ K+
Sbjct: 528  SNKWVDVAGVRKAMKDQGTKKEPGLSSIEVNGAVHDFMMGDKTHPQTRKIYEMLAEMNKK 587

Query: 1250 IKPMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDC 1429
            +K  GY P+T  +L+N+DEE++E A+  HSEKLA+ F LIS+   TPIRIVKNLR+C DC
Sbjct: 588  LKEAGYTPNTSVVLQNIDEEEKETALNYHSEKLAMAFGLISTAACTPIRIVKNLRVCDDC 647

Query: 1430 H 1432
            H
Sbjct: 648  H 648



 Score =  179 bits (455), Expect = 2e-42
 Identities = 109/383 (28%), Positives = 207/383 (54%), Gaps = 13/383 (3%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVE 181
            ER++VSW+ +I+G+ +N    EAL +  +M   ++KP    ++S++     A++++ ++ 
Sbjct: 70   ERDVVSWSTMINGYVRNRGFGEALEVIREMHFLQVKPSEVAMISMIGLF--ADIADVKMA 127

Query: 182  QIVGFASLANS------ISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYS 343
            + +    + NS      + V+TA++ +Y K G +  ARR+FD + EK +V+W  MIAG  
Sbjct: 128  KAMHCYVVRNSANEKLVVPVTTALVDMYVKCGNLGYARRLFDGLAEKSVVSWTTMIAGCI 187

Query: 344  QNQRPAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIEL 523
            +     E ++LF+RM  E      P+ +T++S+I     +GAL LG+W+HAY+ +N   +
Sbjct: 188  RCNEVEEGVKLFKRMLEERKF---PNEITVLSLIIESGNVGALELGKWLHAYVLRNGFVM 244

Query: 524  DLFLETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMME 703
             L L T+L+DMY KCG+ + +R +F  +  +D+  W+AMI   +   + ++A ++F+ M+
Sbjct: 245  SLALATALVDMYGKCGEAEYARAVFDSIEEKDVMIWSAMISAYSRANQTNQASELFARMK 304

Query: 704  RNGVMPNEITFIALLTASSHGGLASKGLVL---FDLMQIQYGIVPRIEHYGCVVDLLGRA 874
             +GV PN++T ++L++     G    G  +    +  +I   ++ R      +VD+  + 
Sbjct: 305  DSGVRPNQVTMVSLISLCGEVGALDLGKWVHSYINQQRIDVDVILRT----ALVDMYAKC 360

Query: 875  GRIEDAFEFVRNMPIEPDKVVWGALLSACRSH----QNLELAEEAAHRLVELDPRHDGNY 1042
            G I+ A     +  I  D  +W  +++    H    Q LEL EE   + V+    +D  +
Sbjct: 361  GEIDVALRLF-SEAINRDSQMWNVMITGLAMHGCGKQALELFEEMQRQGVK---PNDITF 416

Query: 1043 VLLSNVYASVGKWRDVEKVRARM 1111
            + L +  +  G   D +K+  +M
Sbjct: 417  IGLLHACSHAGLVADGKKIFEKM 439



 Score =  144 bits (362), Expect = 1e-31
 Identities = 98/299 (32%), Positives = 160/299 (53%), Gaps = 6/299 (2%)
 Frame = +2

Query: 113 DNTTILSVVSAVSGANLSEDEVEQIVGFA---SLANSISVSTAILSLYAKLGRIDDARRI 283
           D+ TI SV+ A  G +  E    +I GFA    L     V  A++ +Y + GR++ AR +
Sbjct: 6   DHFTIPSVLKAC-GQSSVEMLGREIHGFALKGGLDCDAFVCNALIKMYGECGRLELARLV 64

Query: 284 FDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQM 463
           FD + E+D+V+W+ MI GY +N+   EA+E+ R M     + VKP  V M+S+I   A +
Sbjct: 65  FDVMCERDVVSWSTMINGYVRNRGFGEALEVIREMHF---LQVKPSEVAMISMIGLFADI 121

Query: 464 GALGLGEWVHAYIEKNRIELDLFLE--TSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNA 637
             + + + +H Y+ +N     L +   T+L+DMY KCG+L  +RR+F G+  + + SW  
Sbjct: 122 ADVKMAKAMHCYVVRNSANEKLVVPVTTALVDMYVKCGNLGYARRLFDGLAEKSVVSWTT 181

Query: 638 MIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALLTASSHGGLASKGLVLFDLMQIQY 817
           MI G     + +E  K+F  M      PNEIT ++L+  S + G    G  L   + ++ 
Sbjct: 182 MIAGCIRCNEVEEGVKLFKRMLEERKFPNEITVLSLIIESGNVGALELGKWLHAYV-LRN 240

Query: 818 GIVPRIEHYGCVVDLLGRAGRIEDAFEFVRNMPIEPDKVVWGALLSA-CRSHQNLELAE 991
           G V  +     +VD+ G+ G  E A   V +   E D ++W A++SA  R++Q  + +E
Sbjct: 241 GFVMSLALATALVDMYGKCGEAEYA-RAVFDSIEEKDVMIWSAMISAYSRANQTNQASE 298



 Score = 72.4 bits (176), Expect = 5e-10
 Identities = 36/115 (31%), Positives = 62/115 (53%)
 Frame = +2

Query: 404 VGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDLDR 583
           +G + D  T+ S++ +C Q     LG  +H +  K  ++ D F+  +LI MY +CG L+ 
Sbjct: 1   MGTQVDHFTIPSVLKACGQSSVEMLGREIHGFALKGGLDCDAFVCNALIKMYGECGRLEL 60

Query: 584 SRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALL 748
           +R +F  M  RD+ SW+ MI G   +    EA ++   M    V P+E+  I+++
Sbjct: 61  ARLVFDVMCERDVVSWSTMINGYVRNRGFGEALEVIREMHFLQVKPSEVAMISMI 115


>ref|XP_007030476.1| Tetratricopeptide repeat-like superfamily protein, putative
            [Theobroma cacao] gi|508719081|gb|EOY10978.1|
            Tetratricopeptide repeat-like superfamily protein,
            putative [Theobroma cacao]
          Length = 783

 Score =  462 bits (1190), Expect = e-127
 Identities = 212/479 (44%), Positives = 337/479 (70%), Gaps = 2/479 (0%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVS--GANLSEDE 175
            ++++VSW A+I+G+    + +E   +F++M++ RIKP+  T+LS+V      GA     +
Sbjct: 272  QKSIVSWTAMIAGYIHCNKLEEGGKLFARMIEERIKPNEITLLSLVVECGFVGALELGKQ 331

Query: 176  VEQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQR 355
            +   +    +  S++++TA++ +Y K G+I +A+ +FD +  KD++ W+AMIA Y+Q   
Sbjct: 332  IHAYISRNGICVSLALATALVDMYGKCGQIRNAKAVFDTVKNKDVMIWSAMIAAYAQAHC 391

Query: 356  PAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFL 535
              +A++LF +M+     GV+P+ VTMV++++ CA+ GAL +G+WVH YI++  +E+D+ L
Sbjct: 392  IDQALDLFVKMRDS---GVRPNQVTMVTVLSLCAEAGALDMGKWVHTYIDRQVVEMDMIL 448

Query: 536  ETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGV 715
            +T+LI+MYAKCGD+D + R+F+    +D+  WN M+ G  +HG G EA ++FS MER G 
Sbjct: 449  QTALIEMYAKCGDIDGAWRLFRESKDQDIGMWNTMMAGFGMHGCGKEALELFSEMERVGA 508

Query: 716  MPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAF 895
             PN+ITFI LL A SH GL  +G + F+ M   +G+VP++EHYGC+VDLLGRAG +++A+
Sbjct: 509  RPNDITFIGLLHACSHAGLVKEGRLFFEKMVHDFGLVPKVEHYGCMVDLLGRAGLLDEAY 568

Query: 896  EFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYASVG 1075
            E +++MPI P+ + W ALL+AC+ H+N  L E AA +LV L+P++ G  V +SN+YA   
Sbjct: 569  EMIKSMPIRPNTITWSALLAACKLHKNTVLGEMAARQLVYLEPQNCGYNVSMSNIYAVAN 628

Query: 1076 KWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKRIK 1255
            +W DV  VR  M+ + +KK PG S++E++G VHEF+ GD++HP+ ++I     E+ K++K
Sbjct: 629  RWNDVAGVRKAMKNKGMKKEPGLSSIEVDGYVHEFIMGDKAHPQIEKINDMVSEIGKKLK 688

Query: 1256 PMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDCH 1432
              GY+ DT A+L+N+D+E++E A+  HSEKLA+ F LIS+ P TPIR+VKNLR+C DCH
Sbjct: 689  EAGYMADTSAVLKNIDKEEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRVCNDCH 747



 Score =  160 bits (405), Expect = 1e-36
 Identities = 100/339 (29%), Positives = 178/339 (52%), Gaps = 8/339 (2%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVE 181
            ER++VSW+ +I  + ++    EAL I  +M   +++P    ++S+V+    A L + E+ 
Sbjct: 171  ERDVVSWSTMIRSYVRSKLYREALDIVRKMHILQVRPSEVAMISMVNLF--AELKDIEMG 228

Query: 182  QIVGFASLAN----SISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQN 349
            + +      N     + ++TA + +YAK G +  A  +F  + +K IV+W AMIAGY   
Sbjct: 229  RAMHAYVTRNLEKMGVHLTTAFIDMYAKSGNLASAGLLFHGLNQKSIVSWTAMIAGYIHC 288

Query: 350  QRPAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDL 529
             +  E  +LF RM  E    +KP+ +T++S++  C  +GAL LG+ +HAYI +N I + L
Sbjct: 289  NKLEEGGKLFARMIEE---RIKPNEITLLSLVVECGFVGALELGKQIHAYISRNGICVSL 345

Query: 530  FLETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERN 709
             L T+L+DMY KCG +  ++ +F  +  +D+  W+AMI   A     D+A  +F  M  +
Sbjct: 346  ALATALVDMYGKCGQIRNAKAVFDTVKNKDVMIWSAMIAAYAQAHCIDQALDLFVKMRDS 405

Query: 710  GVMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIED 889
            GV PN++T + +L+  +  G    G  +   +  Q   +  I     ++++  + G I+ 
Sbjct: 406  GVRPNQVTMVTVLSLCAEAGALDMGKWVHTYIDRQVVEMDMILQ-TALIEMYAKCGDIDG 464

Query: 890  AFEFVRNMPIEPDKVVWGALLSACRSH----QNLELAEE 994
            A+   R    + D  +W  +++    H    + LEL  E
Sbjct: 465  AWRLFRESK-DQDIGMWNTMMAGFGMHGCGKEALELFSE 502



 Score =  156 bits (395), Expect = 2e-35
 Identities = 94/318 (29%), Positives = 176/318 (55%), Gaps = 6/318 (1%)
 Frame = +2

Query: 23   NALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVEQIVGFA- 199
            N LI+ +++N Q    L+I++ + +T  + DN  + +++ A S  ++++   E I GFA 
Sbjct: 77   NFLITSYTRNSQPHNTLAIYAYLRRTDYEVDNFMVPAILKACSFVSMTQLGKE-IHGFAL 135

Query: 200  --SLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAIE 373
               L   + VS A++ +Y++      AR +FD + E+D+V+W+ MI  Y +++   EA++
Sbjct: 136  KNGLIEDVFVSNALIQMYSECRSAVSARLLFDNMDERDVVSWSTMIRSYVRSKLYREALD 195

Query: 374  LFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLID 553
            + R+M     + V+P  V M+S++   A++  + +G  +HAY+ +N  ++ + L T+ ID
Sbjct: 196  IVRKMHI---LQVRPSEVAMISMVNLFAELKDIEMGRAMHAYVTRNLEKMGVHLTTAFID 252

Query: 554  MYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEIT 733
            MYAK G+L  +  +F G+  + + SW AMI G     K +E  K+F+ M    + PNEIT
Sbjct: 253  MYAKSGNLASAGLLFHGLNQKSIVSWTAMIAGYIHCNKLEEGGKLFARMIEERIKPNEIT 312

Query: 734  FIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDA---FEFV 904
             ++L+      G    G  +   +  + GI   +     +VD+ G+ G+I +A   F+ V
Sbjct: 313  LLSLVVECGFVGALELGKQIHAYIS-RNGICVSLALATALVDMYGKCGQIRNAKAVFDTV 371

Query: 905  RNMPIEPDKVVWGALLSA 958
            +N     D ++W A+++A
Sbjct: 372  KN----KDVMIWSAMIAA 385


>ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like
            [Vitis vinifera]
          Length = 738

 Score =  462 bits (1190), Expect = e-127
 Identities = 221/479 (46%), Positives = 334/479 (69%), Gaps = 3/479 (0%)
 Frame = +2

Query: 5    RNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSE--DEV 178
            R+ VSWNA+I+G++Q+G+ +EAL+ F +M +  + P+ +T+++V+SA + +   E  + V
Sbjct: 227  RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWV 286

Query: 179  EQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRP 358
               +    L +++ +  A++ +Y+K G +D AR +F+ I EKDI++WN MI GYS     
Sbjct: 287  RSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSY 346

Query: 359  AEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIEL-DLFL 535
             EA+ LFR+MQ      V+P+ VT VSI+ +CA +GAL LG+W+HAYI+K  + L +  L
Sbjct: 347  KEALALFRKMQQS---NVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSL 403

Query: 536  ETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGV 715
             TSLIDMYAKCG+++ ++++F GM  + L SWNAMI GLA+HG  + A ++F  M   G 
Sbjct: 404  WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGF 463

Query: 716  MPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAF 895
             P++ITF+ +L+A SH GL   G   F  M   Y I P+++HYGC++DLLGRAG  ++A 
Sbjct: 464  EPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAE 523

Query: 896  EFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYASVG 1075
              ++NM ++PD  +WG+LL ACR H N+EL E AA  L EL+P + G YVLLSN+YA+ G
Sbjct: 524  ALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAG 583

Query: 1076 KWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKRIK 1255
            +W DV ++R ++  + +KK PGCS++E++ VVHEF+ GD+ H + Q+IY   DE+ + ++
Sbjct: 584  RWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLE 643

Query: 1256 PMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDCH 1432
              G+VPDT  +L ++DEE +E ++  HSEKLA+ F LIS+KP+T IRIVKNLR+CG+CH
Sbjct: 644  KAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCH 702



 Score =  119 bits (297), Expect = 4e-24
 Identities = 78/271 (28%), Positives = 129/271 (47%), Gaps = 31/271 (11%)
 Frame = +2

Query: 257 GRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMV 436
           G +  A  +F+ I + +   WN MI G S +  P  AI+ + RM      GV+P+  T  
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLL---CGVEPNSYTFP 136

Query: 437 SIITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGD-------------- 574
            ++ SCA++GA   G+ +H ++ K  +E D F+ TSLI+MYA+ G+              
Sbjct: 137 FLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLR 196

Query: 575 -----------------LDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMME 703
                            LD +RR+F+ +  RD  SWNAMI G A  G+ +EA   F  M+
Sbjct: 197 DAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMK 256

Query: 704 RNGVMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRI 883
           R  V PNE T + +L+A +  G    G  +   ++  +G+   +     ++D+  + G +
Sbjct: 257 RANVAPNESTMVTVLSACAQSGSLELGNWVRSWIE-DHGLGSNLRLVNALIDMYSKCGDL 315

Query: 884 EDAFEFVRNMPIEPDKVVWGALLSACRSHQN 976
           + A +    +  E D + W  ++    SH N
Sbjct: 316 DKARDLFEGI-CEKDIISWNVMIGG-YSHMN 344


>ref|XP_002324235.2| pentatricopeptide repeat-containing family protein [Populus
            trichocarpa] gi|550317719|gb|EEF02800.2|
            pentatricopeptide repeat-containing family protein
            [Populus trichocarpa]
          Length = 736

 Score =  460 bits (1183), Expect = e-127
 Identities = 222/481 (46%), Positives = 326/481 (67%), Gaps = 5/481 (1%)
 Frame = +2

Query: 5    RNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAV--SGANLSEDE- 175
            R++VSWNA+ISG++Q+G+ +EA++ F +M + ++ P+ +T+LSV+SA   SG++L     
Sbjct: 223  RDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNW 282

Query: 176  VEQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQR 355
            V   +    L ++I +   ++ +Y K G +++A  +F++I +K++V+WN MI GY+    
Sbjct: 283  VRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSC 342

Query: 356  PAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELD--L 529
              EA+ LFRRM       + P+ VT +SI+ +CA +GAL LG+WVHAY++KN   +   +
Sbjct: 343  YKEALGLFRRMMQS---NIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTV 399

Query: 530  FLETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERN 709
             L TSLIDMYAKCGDL  ++R+F  M T+ LA+WNAMI G A+HG  D A  +FS M   
Sbjct: 400  ALWTSLIDMYAKCGDLAAAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSE 459

Query: 710  GVMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIED 889
            G +P++ITF+ +LTA  H GL S G   F  M   Y + P++ HYGC++DL GRAG  ++
Sbjct: 460  GFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDE 519

Query: 890  AFEFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYAS 1069
            A   V+NM ++PD  +W +LL ACR H+ +ELAE  A  L EL+P +   YVLLSN+YA 
Sbjct: 520  AETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAG 579

Query: 1070 VGKWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKR 1249
             G+W DV K+R R+    +KK PGCS++E++ VVHEF+ GD+ HP+  EIY   DE+  R
Sbjct: 580  AGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMR 639

Query: 1250 IKPMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDC 1429
            ++  G+VPDT  +L ++DEE +E  +  HSEKLA+ F LIS+KP T IRI+KNLR+CG+C
Sbjct: 640  LEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNC 699

Query: 1430 H 1432
            H
Sbjct: 700  H 700



 Score =  150 bits (379), Expect = 1e-33
 Identities = 100/363 (27%), Positives = 180/363 (49%), Gaps = 36/363 (9%)
 Frame = +2

Query: 8    NLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSA---VSGANLSEDEV 178
            N V WN +I G S +     AL  +  M+ +  +P+  T  S+  +   + GA+  +   
Sbjct: 92   NHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVH 151

Query: 179  EQIVGF-------------------------------ASLANSISVSTAILSLYAKLGRI 265
              ++                                 +S+ +++S  TA+++ YA  G +
Sbjct: 152  AHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSF-TALITGYASKGFL 210

Query: 266  DDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSII 445
            D+AR +FDEIP +D+V+WNAMI+GY+Q+ R  EA+  F  M+      V P+  TM+S++
Sbjct: 211  DEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRR---AKVTPNVSTMLSVL 267

Query: 446  TSCAQMG-ALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRDL 622
            ++CAQ G +L LG WV ++IE   +  ++ L   LIDMY KCGDL+ +  +F+ +  +++
Sbjct: 268  SACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNV 327

Query: 623  ASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALLTASSHGGLASKGLVLFDL 802
             SWN MI G        EA  +F  M ++ + PN++TF+++L A ++ G    G  +   
Sbjct: 328  VSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAY 387

Query: 803  M-QIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVRNMPIEPDKVVWGALLSACRSHQNL 979
            + +    +   +  +  ++D+  + G +  A      M  +     W A++S    H + 
Sbjct: 388  VDKNMKSMKNTVALWTSLIDMYAKCGDLAAAKRIFDCMNTK-SLATWNAMISGFAMHGHT 446

Query: 980  ELA 988
            + A
Sbjct: 447  DTA 449



 Score =  124 bits (310), Expect = 1e-25
 Identities = 72/228 (31%), Positives = 128/228 (56%), Gaps = 8/228 (3%)
 Frame = +2

Query: 2   ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVE 181
           ++N+VSWN +I G++      EAL +F +M+++ I P++ T LS++ A   ANL   ++ 
Sbjct: 324 DKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPAC--ANLGALDLG 381

Query: 182 QIV------GFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYS 343
           + V         S+ N++++ T+++ +YAK G +  A+RIFD +  K + TWNAMI+G++
Sbjct: 382 KWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAAAKRIFDCMNTKSLATWNAMISGFA 441

Query: 344 QNQRPAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLG-EWVHAYIEKNRIE 520
            +     A+ LF RM SE   G  PD +T V ++T+C   G L LG  +  + I+  ++ 
Sbjct: 442 MHGHTDTALGLFSRMTSE---GFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVS 498

Query: 521 LDLFLETSLIDMYAKCGDLDRSRRMFQGMTTR-DLASWNAMIKGLAIH 661
             L     +ID++ + G  D +  + + M  + D A W +++    IH
Sbjct: 499 PKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIH 546



 Score = 99.8 bits (247), Expect = 3e-18
 Identities = 75/266 (28%), Positives = 121/266 (45%), Gaps = 34/266 (12%)
 Frame = +2

Query: 257 GRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMV 436
           G +  A  +F  I   + V WN MI G S ++ P  A+E +  M S    G +P+  T  
Sbjct: 76  GDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISS---GTEPNEYTFP 132

Query: 437 SIITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGD-------------- 574
           SI  SC ++     G+ VHA++ K  +E + F+ TSLI+MYA+ G+              
Sbjct: 133 SIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMR 192

Query: 575 -----------------LDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMME 703
                            LD +R +F  +  RD+ SWNAMI G A  G+ +EA   F  M 
Sbjct: 193 DAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMR 252

Query: 704 RNGVMPNEITFIALLTASSHGGLASKGLVLFDLMQI---QYGIVPRIEHYGCVVDLLGRA 874
           R  V PN  T +++L+A +  G     L L + ++      G+   I     ++D+  + 
Sbjct: 253 RAKVTPNVSTMLSVLSACAQSG---SSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKC 309

Query: 875 GRIEDAFEFVRNMPIEPDKVVWGALL 952
           G +E+A      +  + + V W  ++
Sbjct: 310 GDLEEASNLFEKIQ-DKNVVSWNVMI 334


>gb|EYU45574.1| hypothetical protein MIMGU_mgv1a001941mg [Mimulus guttatus]
          Length = 736

 Score =  458 bits (1179), Expect = e-126
 Identities = 224/480 (46%), Positives = 333/480 (69%), Gaps = 4/480 (0%)
 Frame = +2

Query: 5    RNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSE--DEV 178
            R++VSWNA+ISG++Q G+ DEALS+F +M    + PD +T+LSV+SA +     E  D +
Sbjct: 224  RDVVSWNAMISGYAQIGKFDEALSLFREMRNAEVAPDVSTLLSVLSACARVGDIETGDWI 283

Query: 179  EQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRP 358
            +  +    L +++ +  A++ +YAK G +  AR++FD I EKDIV+WN MI GY+     
Sbjct: 284  KLWIEENRLDSNLQLVNAMIDMYAKCGNLHTARKLFDGIKEKDIVSWNVMIGGYTHMSEY 343

Query: 359  AEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIEL-DLFL 535
              A+E+FR +Q      V+P+ VT ++II +CAQ+GAL LG+W+H YIEK+  +  +  L
Sbjct: 344  KNALEMFRLLQLN---KVEPNDVTFLNIIPACAQLGALDLGKWMHTYIEKHYHDFPNETL 400

Query: 536  ETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGV 715
             TSLI+MYAKCG+++ ++++F G  T+ LASWNAMI GLA+HG    A ++FS M + G+
Sbjct: 401  WTSLINMYAKCGNIEAAKQIFYGTKTKSLASWNAMISGLAMHGDASNAIELFSKMAKEGL 460

Query: 716  M-PNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDA 892
              P+EITF+++L+A  H GL   G  +F  M   Y I P+++HYGC++DLLGRAG  E+A
Sbjct: 461  FKPDEITFVSVLSACCHAGLVDLGRQIFKSMVQDYNISPQLQHYGCMIDLLGRAGLFEEA 520

Query: 893  FEFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYASV 1072
             E V  M IEPD  +WG++L ACR H+NLEL E AA +L +++P + G+Y+LLSN+YA  
Sbjct: 521  MELVEGMEIEPDGAIWGSILGACRIHKNLELGEFAAEKLFKIEPNNPGSYILLSNIYARA 580

Query: 1073 GKWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKRI 1252
            GKW +V ++R  ++ + +KK PG +++E++G VHEF+  DR+H R +EIY   DE+   +
Sbjct: 581  GKWDEVARIRTLLKDKGMKKVPGSTSIEVDGAVHEFLVSDRTHLRSEEIYMMLDEIDTVL 640

Query: 1253 KPMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDCH 1432
            +  G+VPDT  +  ++DEE +E  +  HSEKLA+ F LIS+KP T +RIVKNLR+CG+CH
Sbjct: 641  EKAGHVPDTSEVYYDVDEELKEGVLCEHSEKLAIAFGLISTKPGTTLRIVKNLRVCGNCH 700



 Score =  170 bits (431), Expect = 1e-39
 Identities = 102/369 (27%), Positives = 192/369 (52%), Gaps = 33/369 (8%)
 Frame = +2

Query: 8    NLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSED--EVE 181
            N V +N +I G+S       AL+ + +ML   ++P++ T   ++ + +    ++   +V 
Sbjct: 93   NHVIYNMMIRGYSLGSVPKSALNCYVKMLFLGLEPNSYTFPFLLKSCTKFPTAQTGKQVH 152

Query: 182  QIVGFASLANSISVSTAILSLYAKLGRIDDARRIFD------------------------ 289
              V    L + + V T+++++YA  G ++DAR +FD                        
Sbjct: 153  GHVFKFGLDSDVYVHTSLINMYAHHGDLEDARMVFDKSPLRDAVSFTALITGYLPRGYVD 212

Query: 290  -------EIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSIIT 448
                   EIP +D+V+WNAMI+GY+Q  +  EA+ LFR M++     V PD  T++S+++
Sbjct: 213  RARELFDEIPVRDVVSWNAMISGYAQIGKFDEALSLFREMRN---AEVAPDVSTLLSVLS 269

Query: 449  SCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRDLAS 628
            +CA++G +  G+W+  +IE+NR++ +L L  ++IDMYAKCG+L  +R++F G+  +D+ S
Sbjct: 270  ACARVGDIETGDWIKLWIEENRLDSNLQLVNAMIDMYAKCGNLHTARKLFDGIKEKDIVS 329

Query: 629  WNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALLTASSHGGLASKGLVLFDLMQ 808
            WN MI G     +   A ++F +++ N V PN++TF+ ++ A +  G    G  +   ++
Sbjct: 330  WNVMIGGYTHMSEYKNALEMFRLLQLNKVEPNDVTFLNIIPACAQLGALDLGKWMHTYIE 389

Query: 809  IQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVRNMPIEPDKVVWGALLSACRSHQNLELA 988
              Y   P    +  ++++  + G IE A +       +     W A++S    H +   A
Sbjct: 390  KHYHDFPNETLWTSLINMYAKCGNIEAAKQIFYGTKTK-SLASWNAMISGLAMHGDASNA 448

Query: 989  EEAAHRLVE 1015
             E   ++ +
Sbjct: 449  IELFSKMAK 457



 Score =  102 bits (255), Expect = 3e-19
 Identities = 82/313 (26%), Positives = 136/313 (43%), Gaps = 38/313 (12%)
 Frame = +2

Query: 257  GRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMV 436
            G +  A  IFD I   + V +N MI GYS    P  A+  + +M     +G++P+  T  
Sbjct: 77   GNLSYAVSIFDSIHNPNHVIYNMMIRGYSLGSVPKSALNCYVKMLF---LGLEPNSYTFP 133

Query: 437  SIITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDL------------- 577
             ++ SC +      G+ VH ++ K  ++ D+++ TSLI+MYA  GDL             
Sbjct: 134  FLLKSCTKFPTAQTGKQVHGHVFKFGLDSDVYVHTSLINMYAHHGDLEDARMVFDKSPLR 193

Query: 578  ------------------DRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMME 703
                              DR+R +F  +  RD+ SWNAMI G A  GK DEA  +F  M 
Sbjct: 194  DAVSFTALITGYLPRGYVDRARELFDEIPVRDVVSWNAMISGYAQIGKFDEALSLFREMR 253

Query: 704  RNGVMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRI 883
               V P+  T +++L+A +  G    G     L   +  +   ++    ++D+  + G +
Sbjct: 254  NAEVAPDVSTLLSVLSACARVGDIETG-DWIKLWIEENRLDSNLQLVNAMIDMYAKCGNL 312

Query: 884  EDAFEFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVY 1063
              A +    +  E D V W  ++         + A E   RL++L+     +   L+ + 
Sbjct: 313  HTARKLFDGIK-EKDIVSWNVMIGGYTHMSEYKNALE-MFRLLQLNKVEPNDVTFLNIIP 370

Query: 1064 A-------SVGKW 1081
            A        +GKW
Sbjct: 371  ACAQLGALDLGKW 383


>ref|XP_007206274.1| hypothetical protein PRUPE_ppa016070mg [Prunus persica]
            gi|462401916|gb|EMJ07473.1| hypothetical protein
            PRUPE_ppa016070mg [Prunus persica]
          Length = 608

 Score =  458 bits (1179), Expect = e-126
 Identities = 220/502 (43%), Positives = 339/502 (67%), Gaps = 25/502 (4%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVE 181
            +R++VSW+ +I  + +N    EAL +  +M   ++KP    ++S+V+    A++++ E+ 
Sbjct: 73   DRDVVSWSTMIRSYVRNRLFREALELIKEMHCMQVKPSEIAMVSMVNLF--ADVADREMG 130

Query: 182  QIVGFASLANS------ISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYS 343
            + +    + NS      +S+STA++ +Y K G +  ARR+FD + +K+IV+W AMIAGY 
Sbjct: 131  KAMHAYVVRNSTNEKLGVSISTALIDMYVKCGNLAYARRVFDGLAQKNIVSWTAMIAGYI 190

Query: 344  QNQRPAEAIELFRRMQSECGV-------------------GVKPDGVTMVSIITSCAQMG 466
              +   E  +LF RM  E                      GV+P  VTMVS+I+ CA++G
Sbjct: 191  HCRNLQEGAKLFNRMLMERNYPNEITMLSLVIESGSMKDSGVRPSQVTMVSLISLCAEVG 250

Query: 467  ALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIK 646
            AL LG+WVH+YI + R+E+D+ L T+L+DMYAKCGD+D + R+F   + RD   WNAM+ 
Sbjct: 251  ALDLGKWVHSYINQQRMEVDVILRTALVDMYAKCGDMDMALRLFSEASNRDSCMWNAMMT 310

Query: 647  GLAIHGKGDEAFKIFSMMERNGVMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIV 826
            G A+HG G +A ++F  M+R GV PN+ITFI +L A SH GL + G +LF+ M   YG+ 
Sbjct: 311  GFAMHGCGKQALELFEQMDRQGVEPNDITFIGVLHACSHAGLVADGKLLFEKMVHVYGLA 370

Query: 827  PRIEHYGCVVDLLGRAGRIEDAFEFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHR 1006
            P++EHYGC+VDLLGRAG +++A + +++MP++P+ +VWGALL+AC+ H+N  LAE AA  
Sbjct: 371  PKVEHYGCMVDLLGRAGNLDEAHKLIKSMPMQPNTIVWGALLAACKIHKNPNLAEVAARE 430

Query: 1007 LVELDPRHDGNYVLLSNVYASVGKWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVA 1186
            L+EL+P++ G  +L+SN+YA+  +W +V+ VR  M+ +  KK PG S++E+ G VH+F+ 
Sbjct: 431  LLELEPQNCGYNILMSNIYAASNRWNEVDGVRKYMKDRGTKKEPGLSSIEVNGSVHDFIM 490

Query: 1187 GDRSHPRFQEIYGAWDELVKRIKPMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFAL 1366
            GD++HP+ ++IY    E+ K++K  GY P+T  +L+N+DEE++E A+  HSE+LA+ F L
Sbjct: 491  GDKAHPQTRKIYEMLAEMTKKLKEAGYTPNTSVVLQNIDEEEKETAVNYHSERLAMAFGL 550

Query: 1367 ISSKPKTPIRIVKNLRICGDCH 1432
            IS+   TPIRIVKNLR+C DCH
Sbjct: 551  ISTAAGTPIRIVKNLRVCEDCH 572



 Score =  132 bits (333), Expect = 3e-28
 Identities = 98/332 (29%), Positives = 168/332 (50%), Gaps = 31/332 (9%)
 Frame = +2

Query: 113  DNTTILSVVSAVSGANLSEDEVEQIVGFA---SLANSISVSTAILSLYAKLGRIDDARRI 283
            D+ TI SV+ A   ++L+    E   GFA    L + + VS A++ +Y++ G +  AR +
Sbjct: 9    DSFTIPSVLKACGQSSLAVLGKETH-GFALKNGLDSDVFVSNALIQMYSECGNVVFARLL 67

Query: 284  FDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQM 463
            FD++ ++D+V+W+ MI  Y +N+   EA+EL + M     + VKP  + MVS++   A +
Sbjct: 68   FDQMADRDVVSWSTMIRSYVRNRLFREALELIKEMHC---MQVKPSEIAMVSMVNLFADV 124

Query: 464  GALGLGEWVHAYIEKNRI--ELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNA 637
                +G+ +HAY+ +N    +L + + T+LIDMY KCG+L  +RR+F G+  +++ SW A
Sbjct: 125  ADREMGKAMHAYVVRNSTNEKLGVSISTALIDMYVKCGNLAYARRVFDGLAQKNIVSWTA 184

Query: 638  MIKGLAIHGKGDEAFKIFS--MMERN--------------------GVMPNEITFIALLT 751
            MI G        E  K+F+  +MERN                    GV P+++T ++L++
Sbjct: 185  MIAGYIHCRNLQEGAKLFNRMLMERNYPNEITMLSLVIESGSMKDSGVRPSQVTMVSLIS 244

Query: 752  ASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVRNMPIEPDK 931
              +  G    G  +   +  Q   V  I     +VD+  + G ++ A           D 
Sbjct: 245  LCAEVGALDLGKWVHSYINQQRMEVDVILR-TALVDMYAKCGDMDMALRLFSEAS-NRDS 302

Query: 932  VVWGALLSACRSH----QNLELAEEAAHRLVE 1015
             +W A+++    H    Q LEL E+   + VE
Sbjct: 303  CMWNAMMTGFAMHGCGKQALELFEQMDRQGVE 334



 Score = 73.6 bits (179), Expect = 2e-10
 Identities = 53/228 (23%), Positives = 107/228 (46%), Gaps = 5/228 (2%)
 Frame = +2

Query: 419  DGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDLDRSRRMF 598
            D  T+ S++ +C Q     LG+  H +  KN ++ D+F+  +LI MY++CG++  +R +F
Sbjct: 9    DSFTIPSVLKACGQSSLAVLGKETHGFALKNGLDSDVFVSNALIQMYSECGNVVFARLLF 68

Query: 599  QGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALL-----TASSH 763
              M  RD+ SW+ MI+    +    EA ++   M    V P+EI  ++++      A   
Sbjct: 69   DQMADRDVVSWSTMIRSYVRNRLFREALELIKEMHCMQVKPSEIAMVSMVNLFADVADRE 128

Query: 764  GGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVRNMPIEPDKVVWG 943
             G A    V+ +    + G    +     ++D+  + G +  A      +  + + V W 
Sbjct: 129  MGKAMHAYVVRNSTNEKLG----VSISTALIDMYVKCGNLAYARRVFDGL-AQKNIVSWT 183

Query: 944  ALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYASVGKWRD 1087
            A+++     +NL+   +  +R+  L  R+  N + + ++    G  +D
Sbjct: 184  AMIAGYIHCRNLQEGAKLFNRM--LMERNYPNEITMLSLVIESGSMKD 229


>gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  458 bits (1179), Expect = e-126
 Identities = 217/490 (44%), Positives = 333/490 (67%), Gaps = 13/490 (2%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSE---- 169
            ER++VSWNA+I+G+ +NG+ +EAL +F +M++T ++PD  T++SVVSA + +   E    
Sbjct: 158  ERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQ 217

Query: 170  -----DEVEQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIA 334
                 D+ +   GF+S   S+ +  A++ LY+K G ++ A  +F+ +  KD+V+WN +I 
Sbjct: 218  VHSWVDDDDDDHGFSS---SLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIG 274

Query: 335  GYSQNQRPAEAIELFRRM--QSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEK 508
            GY+      EA+ LF+ M    EC     P+ VT++S++ +CA +GA+ +G W+H YI+K
Sbjct: 275  GYTHTNLYKEALLLFQEMLRSGEC-----PNDVTLLSVLPACAHLGAIDIGRWIHVYIDK 329

Query: 509  NR--IELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAF 682
                +  +  L TSLIDMYAKCGD++ + ++F  M  R L+SWNAMI G A+HG+ + AF
Sbjct: 330  KLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAF 389

Query: 683  KIFSMMERNGVMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDL 862
             +FS M  N V P++ITF+ LL+A SH GL   G  +F  M   Y + P++EHYGC++DL
Sbjct: 390  DLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDL 449

Query: 863  LGRAGRIEDAFEFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNY 1042
            LG +G  ++A E +  MP+EPD V+W +LL AC+ H NLELAE  A +L++++P + G+Y
Sbjct: 450  LGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSY 509

Query: 1043 VLLSNVYASVGKWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIY 1222
            VLLSN+YA+ G+W DV +VR  +  + +KK PGCS++E++ VVHEF+ GD+ HPR +EIY
Sbjct: 510  VLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIY 569

Query: 1223 GAWDELVKRIKPMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIV 1402
               +E+  +++  G+ PDT  +L+ ++EE +E A+  HSEKLA+ F LIS+KP T + IV
Sbjct: 570  HMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIV 629

Query: 1403 KNLRICGDCH 1432
            KNLR+C +CH
Sbjct: 630  KNLRVCRNCH 639



 Score =  163 bits (412), Expect = 2e-37
 Identities = 113/406 (27%), Positives = 199/406 (49%), Gaps = 42/406 (10%)
 Frame = +2

Query: 8    NLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVEQI 187
            N  S+  L+   +++   +E   I +Q+LK     D     S++S  +     ED  +  
Sbjct: 63   NSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARK-- 120

Query: 188  VGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEA 367
            V  AS    +   TA+++ YA  G    AR++FDEI E+D+V+WNAMI GY +N R  EA
Sbjct: 121  VFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEA 180

Query: 368  IELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYI----EKNRIELDLFL 535
            +ELF+ M       V+PD  T+VS++++CAQ G++ LG  VH+++    + +     L +
Sbjct: 181  LELFKEMMR---TNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKI 237

Query: 536  ETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGV 715
              +LID+Y+KCGD++ +  +F+G++ +D+ SWN +I G        EA  +F  M R+G 
Sbjct: 238  VNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGE 297

Query: 716  MPNEITFIALLTASSHGGLASKGLVLFDLMQIQY-GIVPRIEHYGCVVDLLGRAGRIE-- 886
             PN++T +++L A +H G    G  +   +  +  G+         ++D+  + G IE  
Sbjct: 298  CPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAA 357

Query: 887  --------------------------------DAFEFVRNMPIEPDKVVWGALLSACRSH 970
                                            D F  +R   +EPD + +  LLSAC   
Sbjct: 358  HQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHS 417

Query: 971  QNLELAEEAAHRLVE---LDPRHDGNYVLLSNVYASVGKWRDVEKV 1099
              L+L  +    + +   L P+ + +Y  + ++    G +++ E++
Sbjct: 418  GLLDLGRQIFKSMTQDYNLTPKLE-HYGCMIDLLGHSGLFKEAEEM 462



 Score =  113 bits (282), Expect = 2e-22
 Identities = 74/267 (27%), Positives = 127/267 (47%), Gaps = 34/267 (12%)
 Frame = +2

Query: 281 IFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQ 460
           +F+ I E +++ WN M+ G++ +  P  A+E++ RM S   +G  P+  +   ++ SCA+
Sbjct: 20  VFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVS---LGHLPNSYSFPFLLKSCAK 76

Query: 461 MGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDLDRSRRMFQG------------ 604
             A   G  +HA + K    LD ++ TSLI MYA+ G L+ +R++F              
Sbjct: 77  SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTAL 136

Query: 605 -------------------MTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNE 727
                              +T RD+ SWNAMI G   +G+ +EA ++F  M R  V P+E
Sbjct: 137 ITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDE 196

Query: 728 ITFIALLTASSHGGLASKGLVL---FDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFE 898
            T +++++A +  G    G  +    D     +G    ++    ++DL  + G +E AF 
Sbjct: 197 GTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFG 256

Query: 899 FVRNMPIEPDKVVWGALLSACRSHQNL 979
               +  + D V W  L+    +H NL
Sbjct: 257 LFEGLSCK-DVVSWNTLIGG-YTHTNL 281


>ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like
            [Cucumis sativus] gi|449524140|ref|XP_004169081.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  456 bits (1174), Expect = e-126
 Identities = 217/481 (45%), Positives = 339/481 (70%), Gaps = 4/481 (0%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVE 181
            ER++V+WN+++SG+++NG  DE + +F ++L+ RI+ D+ T++SV+ A     L+  E+ 
Sbjct: 184  ERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACG--RLANLEIG 241

Query: 182  QIVG----FASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQN 349
            +++G       L  + +++T+++ +YAK G++D AR++FDE+ ++D+V W+AMI+GY+Q 
Sbjct: 242  ELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQA 301

Query: 350  QRPAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDL 529
             R  EA+ LF  MQ      V P+ VTMVS++ SCA +GA   G+WVH YI+K +++L +
Sbjct: 302  DRCKEALNLFHEMQKG---NVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTV 358

Query: 530  FLETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERN 709
             L T LID YAKCG +DRS  +F+ M+ +++ +W A+I+GLA +G+G  A + FS M  N
Sbjct: 359  TLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLEN 418

Query: 710  GVMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIED 889
             V PN++TFI +L+A SH  L  +G  LF+ M+  + I PRIEHYGC+VD+LGRAG +E+
Sbjct: 419  DVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEE 478

Query: 890  AFEFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYAS 1069
            A++F+ NMP  P+ VVW  LL++CR+H+N+E+AE++   +  L+P H G+Y+LLSN YA 
Sbjct: 479  AYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYAL 538

Query: 1070 VGKWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKR 1249
            VG+  D  +VR+ ++ + +KK PGCS +EL+GVVHEF + D  H   +EI+ A D+++K+
Sbjct: 539  VGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQ 598

Query: 1250 IKPMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDC 1429
            IK +GYVP+T       +EE +E ++  HSEKLA+ + LI + P+T IRI KNLR+C DC
Sbjct: 599  IKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDC 658

Query: 1430 H 1432
            H
Sbjct: 659  H 659



 Score =  166 bits (419), Expect = 3e-38
 Identities = 100/338 (29%), Positives = 183/338 (54%), Gaps = 3/338 (0%)
 Frame = +2

Query: 17   SWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSG--ANLSEDEVEQIV 190
            ++N +I G +     D AL +F +M +  ++ D  T  SV+ A S   A    ++V  ++
Sbjct: 88   AYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALI 147

Query: 191  GFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAI 370
              +   ++  V   ++ +YA  G+I  AR +FD +PE+ IV WN+M++GY++N    E +
Sbjct: 148  LKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVV 207

Query: 371  ELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLI 550
            +LFR++     + ++ D VTM+S++ +C ++  L +GE +  YI    +  +  L TSLI
Sbjct: 208  KLFRKILE---LRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLI 264

Query: 551  DMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEI 730
            DMYAKCG +D +R++F  M  RD+ +W+AMI G A   +  EA  +F  M++  V PNE+
Sbjct: 265  DMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEV 324

Query: 731  TFIALLTASSHGGLASKG-LVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVR 907
            T +++L + +  G    G  V F + + +  +   +     ++D   + G I+ + E  +
Sbjct: 325  TMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQ--LIDFYAKCGYIDRSVEVFK 382

Query: 908  NMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELD 1021
             M  + +   W AL+    ++   ++A E    ++E D
Sbjct: 383  EMSFK-NVFTWTALIQGLANNGEGKMALEFFSSMLEND 419



 Score =  111 bits (278), Expect = 7e-22
 Identities = 72/247 (29%), Positives = 129/247 (52%), Gaps = 2/247 (0%)
 Frame = +2

Query: 221 VSTAILSLYAKL--GRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQS 394
           ++ A+L   A L    ID A  IF+ I + +   +N MI G +  + P  A+ LF++M  
Sbjct: 55  ITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHE 114

Query: 395 ECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGD 574
           +    V+ D  T  S++ +C++M AL  GE VHA I K+  + + F+E +LI MYA CG 
Sbjct: 115 K---SVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQ 171

Query: 575 LDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALLTA 754
           +  +R +F GM  R + +WN+M+ G   +G  DE  K+F  +    +  +++T I++L A
Sbjct: 172 IGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMA 231

Query: 755 SSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVRNMPIEPDKV 934
                    G ++ + + +  G+         ++D+  + G+++ A +    M  + D V
Sbjct: 232 CGRLANLEIGELIGEYI-VSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMD-KRDVV 289

Query: 935 VWGALLS 955
            W A++S
Sbjct: 290 AWSAMIS 296


>ref|XP_007203470.1| hypothetical protein PRUPE_ppa024598mg [Prunus persica]
            gi|462399001|gb|EMJ04669.1| hypothetical protein
            PRUPE_ppa024598mg [Prunus persica]
          Length = 722

 Score =  455 bits (1171), Expect = e-125
 Identities = 221/479 (46%), Positives = 325/479 (67%), Gaps = 2/479 (0%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGAN--LSEDE 175
            E+++VSW  +I  ++Q  Q  EAL +F +M    + P+  T+++V++A + A        
Sbjct: 211  EKSVVSWATMIDAYAQWDQPIEALKLFDKMESGSVDPNEVTLVNVLTACAKARDLKMAKR 270

Query: 176  VEQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQR 355
            V Q +      N + ++TA++ +Y K G +  AR +FD++PEK++ +WN MI G+ ++  
Sbjct: 271  VHQYIEEYGFGNHLKLNTALMDVYCKCGCVLLARDLFDKMPEKNLFSWNIMINGHVEDSN 330

Query: 356  PAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFL 535
              EA  LFR MQ +   G K D VTMVS++ +C+ +GAL LG+W+HAYIEK +IE+D+ L
Sbjct: 331  YDEAFVLFREMQLK---GEKGDKVTMVSLLLACSHLGALELGKWLHAYIEKEKIEVDVTL 387

Query: 536  ETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGV 715
             T+L+DMYAKCG +D +  +F+ +  +D+ +W A+I G A  G+G +A + F  M+ +GV
Sbjct: 388  GTTLVDMYAKCGSIDGASEVFRKLLEKDVMTWTALISGFASCGQGKKALEHFHEMQTSGV 447

Query: 716  MPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAF 895
             P+ ITF+ +L A SH GL  +G+  F+ M   YGI P IEHYGC+VD+LGRAGRI +A 
Sbjct: 448  KPDAITFVGVLAACSHAGLVDEGISHFNSMHEVYGIQPSIEHYGCMVDILGRAGRIAEAE 507

Query: 896  EFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYASVG 1075
            E +R M + PD+ V G LL ACR H NLE AE AA +L+ELDP  DG YVLLSN+Y+S+ 
Sbjct: 508  ELIRKMQMPPDRFVLGGLLGACRVHGNLEAAERAAQQLLELDPDDDGAYVLLSNLYSSMK 567

Query: 1076 KWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKRIK 1255
            KW + +++R  M  ++VKK PGCS +E++G+VHEFV GD SHP+   IY    ++++R+K
Sbjct: 568  KWEEAKRIRELMAERNVKKAPGCSLIEVDGIVHEFVKGDSSHPQSTHIYEMLQDMIERLK 627

Query: 1256 PMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDCH 1432
              GYVP+   +L ++DEE++E A+  HSEKLA+ F LIS+ P T IR+VKNLR+C DCH
Sbjct: 628  KAGYVPEKSEVLLDIDEEEKETALSLHSEKLAIAFGLISTNPGTTIRVVKNLRVCSDCH 686



 Score = 96.3 bits (238), Expect = 3e-17
 Identities = 72/269 (26%), Positives = 122/269 (45%)
 Frame = +2

Query: 182 QIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPA 361
           ++V F+SL  S              G +  AR +  +IP     T N++I GY+    P 
Sbjct: 88  KVVAFSSLEGS--------------GSLHYARLVLTQIPNPTTYTCNSVIRGYTNKDLPC 133

Query: 362 EAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFLET 541
           EAI  ++ M  +   G  PD  T  S+  SC   G L  G+ +H +  K     D +++ 
Sbjct: 134 EAIFFYQEMIIQ---GWVPDRFTFPSLFKSC---GDLWEGKQLHCHSTKLGFASDSYIQN 187

Query: 542 SLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMP 721
           +L++MY+ CG L  +R +F  M  + + SW  MI   A   +  EA K+F  ME   V P
Sbjct: 188 TLMNMYSNCGCLISARNVFDKMLEKSVVSWATMIDAYAQWDQPIEALKLFDKMESGSVDP 247

Query: 722 NEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEF 901
           NE+T + +LTA +          +   ++ +YG    ++    ++D+  + G +  A + 
Sbjct: 248 NEVTLVNVLTACAKARDLKMAKRVHQYIE-EYGFGNHLKLNTALMDVYCKCGCVLLARDL 306

Query: 902 VRNMPIEPDKVVWGALLSACRSHQNLELA 988
              MP E +   W  +++      N + A
Sbjct: 307 FDKMP-EKNLFSWNIMINGHVEDSNYDEA 334


>ref|XP_004241167.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
            chloroplastic-like [Solanum lycopersicum]
          Length = 744

 Score =  455 bits (1170), Expect = e-125
 Identities = 228/510 (44%), Positives = 328/510 (64%), Gaps = 34/510 (6%)
 Frame = +2

Query: 5    RNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSE--DEV 178
            R++VSWN +I GF++ G  DEAL IF +M +  ++P++ T+++V+SA +     E    V
Sbjct: 201  RDVVSWNTMILGFAEGGYADEALKIFHRMGEENVRPNDVTMMAVLSACAKKLDLEFGRWV 260

Query: 179  EQIVGFASLANSISVSTAILSLYAKLGRIDDARRIF------------------------ 286
               +    +  S+ +  AIL +Y K G I+DA R+F                        
Sbjct: 261  HAFIKRNGIRESLILDNAILDMYMKCGSIEDAERLFRKMGEKDIVSWTTMLVGYARAGNF 320

Query: 287  -------DEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSII 445
                   + +P +DIV WNA+I+ Y Q+ +P EA+ +F  +Q       +PD VT+V  +
Sbjct: 321  NAARSILNTMPSQDIVAWNALISAYEQSGKPKEALSVFNELQ--LIKKAEPDEVTLVCAL 378

Query: 446  TSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRDLA 625
            ++CAQ+GA+ LG W+H YI+K  I+ +  L T+LIDMY+KCGD++++  MF  +  RD+ 
Sbjct: 379  SACAQLGAIDLGGWIHVYIKKQGIKFNCHLTTALIDMYSKCGDVEKALEMFDSVNIRDVF 438

Query: 626  SWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALLTASSHGGLASKGLVLFDLM 805
             W+AMI GLA+HG+G EA  +F  M+ + V PN +T I +L A SH GL  +G  +F+ M
Sbjct: 439  VWSAMIAGLAMHGRGKEAISLFLKMQEHKVKPNSVTLINVLCACSHSGLVEEGRAIFNQM 498

Query: 806  QIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVRNMPIEPDKVVWGALLSACRSHQNLEL 985
            +  YGIVP ++HY C+VD+LGRAG +E A + + NMP+ P   VWGALL ACR H NLEL
Sbjct: 499  EYVYGIVPGVKHYACLVDILGRAGELEVAEKLINNMPVTPGPSVWGALLGACRLHGNLEL 558

Query: 986  AEEAAHRLVELDPRHDGNYVLLSNVYASVGKWRDVEKVRARMRAQHVKKTPGCSAVELEG 1165
            AE+A +RLVEL+P + G YVLLSN+YA  GKW +V  +R RMR   +KK PGCS++E+  
Sbjct: 559  AEQACNRLVELEPENHGAYVLLSNIYAKSGKWDEVSMLRKRMRECGLKKEPGCSSIEVHS 618

Query: 1166 VVHEFVAGDRSHPRFQEIYGAWDELVKRIKPMGYVPDTGAILRNLDEED-REEAIYRHSE 1342
            +VHEF+ GD +HP+ Q+IY   DE+  R+K +GYV +   IL+ ++EED +E+A+  HSE
Sbjct: 619  IVHEFLVGDNTHPQSQKIYAKLDEIAARLKHVGYVSNKSQILQLVEEEDMQEQALNLHSE 678

Query: 1343 KLALTFALISSKPKTPIRIVKNLRICGDCH 1432
            KLA+ F LIS  P  PIRIVKNLR+C DCH
Sbjct: 679  KLAMAFGLISVAPSQPIRIVKNLRVCADCH 708



 Score =  149 bits (375), Expect = 4e-33
 Identities = 109/403 (27%), Positives = 189/403 (46%), Gaps = 37/403 (9%)
 Frame = +2

Query: 8    NLVSWNALISGFSQNGQNDEALSIFSQML-KTRIKPDNTTILSVVSA---VSGANLSEDE 175
            NL SWNALI  +S +    +++ +F  ML + R  P   T   V  A   +         
Sbjct: 99   NLFSWNALIRAYSSSQDPIQSILMFVNMLCEGREFPSKFTYPFVFKASAKMKAIRFGRGL 158

Query: 176  VEQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQR 355
               +V    +   I V  +++  YA  G +D+A  IF+ +  +D+V+WN MI G+++   
Sbjct: 159  HGMVVKGRDVGLDIFVLNSLIHFYADCGCLDEAYLIFENMQTRDVVSWNTMILGFAEGGY 218

Query: 356  PAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFL 535
              EA+++F RM  E    V+P+ VTM++++++CA+   L  G WVHA+I++N I   L L
Sbjct: 219  ADEALKIFHRMGEE---NVRPNDVTMMAVLSACAKKLDLEFGRWVHAFIKRNGIRESLIL 275

Query: 536  ETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGV 715
            + +++DMY KCG ++ + R+F+ M  +D+ SW  M+ G A  G  + A  I + M    +
Sbjct: 276  DNAILDMYMKCGSIEDAERLFRKMGEKDIVSWTTMLVGYARAGNFNAARSILNTMPSQDI 335

Query: 716  M--------------------------------PNEITFIALLTASSHGGLASKGLVLFD 799
            +                                P+E+T +  L+A +  G    G  +  
Sbjct: 336  VAWNALISAYEQSGKPKEALSVFNELQLIKKAEPDEVTLVCALSACAQLGAIDLGGWIHV 395

Query: 800  LMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVRNMPIEPDKVVWGALLSACRSHQNL 979
             ++ Q GI         ++D+  + G +E A E   ++ I  D  VW A+++    H   
Sbjct: 396  YIKKQ-GIKFNCHLTTALIDMYSKCGDVEKALEMFDSVNIR-DVFVWSAMIAGLAMHGR- 452

Query: 980  ELAEEAAHRLVEL-DPRHDGNYVLLSNVYASVGKWRDVEKVRA 1105
               +EA    +++ + +   N V L NV  +      VE+ RA
Sbjct: 453  --GKEAISLFLKMQEHKVKPNSVTLINVLCACSHSGLVEEGRA 493



 Score =  134 bits (337), Expect = 1e-28
 Identities = 99/321 (30%), Positives = 158/321 (49%), Gaps = 14/321 (4%)
 Frame = +2

Query: 263  IDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSI 442
            +D A ++FDEIP+ ++ +WNA+I  YS +Q P ++I +F  M   C     P   T   +
Sbjct: 85   LDYAHKVFDEIPQPNLFSWNALIRAYSSSQDPIQSILMFVNML--CEGREFPSKFTYPFV 142

Query: 443  ITSCAQMGALGLGEWVHAYIEKNR-IELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRD 619
              + A+M A+  G  +H  + K R + LD+F+  SLI  YA CG LD +  +F+ M TRD
Sbjct: 143  FKASAKMKAIRFGRGLHGMVVKGRDVGLDIFVLNSLIHFYADCGCLDEAYLIFENMQTRD 202

Query: 620  LASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALLTASSHGGLASKGLVLFD 799
            + SWN MI G A  G  DEA KIF  M    V PN++T +A+L+A +       G  +  
Sbjct: 203  VVSWNTMILGFAEGGYADEALKIFHRMGEENVRPNDVTMMAVLSACAKKLDLEFGRWVHA 262

Query: 800  LMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVRNMPIEPDKVVWGALLSACRSHQNL 979
             ++ + GI   +     ++D+  + G IEDA    R M  E D V W  +L       N 
Sbjct: 263  FIK-RNGIRESLILDNAILDMYMKCGSIEDAERLFRKMG-EKDIVSWTTMLVGYARAGNF 320

Query: 980  ELAEEAAHRLVELDPRHD-GNYVLLSNVYASVGKWRDV----EKVRARMRAQHVKKTPGC 1144
                 AA  ++   P  D   +  L + Y   GK ++      +++   +A+  + T  C
Sbjct: 321  ----NAARSILNTMPSQDIVAWNALISAYEQSGKPKEALSVFNELQLIKKAEPDEVTLVC 376

Query: 1145 S--------AVELEGVVHEFV 1183
            +        A++L G +H ++
Sbjct: 377  ALSACAQLGAIDLGGWIHVYI 397


>ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
            chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  455 bits (1170), Expect = e-125
 Identities = 219/479 (45%), Positives = 324/479 (67%), Gaps = 3/479 (0%)
 Frame = +2

Query: 5    RNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSA---VSGANLSEDE 175
            + +++WNA+I+G+ +NG   E + +F  ML+ R   D  T+LSV +A   +  ANL +  
Sbjct: 235  KGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQ-W 293

Query: 176  VEQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQR 355
            + +      +  S +++TA++ +YAK G +D ARR+FD +  +D+V W+AMI+GY+Q+ R
Sbjct: 294  IAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDR 353

Query: 356  PAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFL 535
              EA+ +F  MQ   G  V P+ VTMVS++++CA +GAL  G+WVH+YI +  + L + L
Sbjct: 354  CREALAIFNEMQ---GTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVIL 410

Query: 536  ETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGV 715
             T+L+D YAKCG +  + + F+ M  R+  +W A+IKG+A +G+  EA ++FS M    +
Sbjct: 411  GTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANI 470

Query: 716  MPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAF 895
             P ++TFI +L A SHG L  +G   F  M   YGI PRIEHYGC+VDLLGRAG I++A+
Sbjct: 471  EPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAY 530

Query: 896  EFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYASVG 1075
            +F+RNMPIEP+ VVW ALLSAC  H+N+E+ EEA  ++V LDP H GNY+LLSN YASVG
Sbjct: 531  QFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVG 590

Query: 1076 KWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKRIK 1255
            +W++   VR  M+ + V+K PGCS +ELEG + EF A D  HP+  EIY    E+++ IK
Sbjct: 591  QWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIK 650

Query: 1256 PMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDCH 1432
             +GY+P+T     ++DE +++ ++  HSEKLA+ F L+ S+P   IR+ KNLR+C DCH
Sbjct: 651  MVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCH 709



 Score = 94.0 bits (232), Expect = 1e-16
 Identities = 74/270 (27%), Positives = 128/270 (47%), Gaps = 1/270 (0%)
 Frame = +2

Query: 149 SGA-NLSEDEVEQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNA 325
           SGA   S D    ++  A+L  + + S+A LS   +L R+          P +   ++N 
Sbjct: 89  SGAMTTSPDSFHSLLEAAALP-APATSSAHLSYAIRLFRLGPH-------PPRSARSYNI 140

Query: 326 MIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIE 505
           +I  + +   P +A+ LF  M  +    V PD  T+ + + SC++M  L +G  V AY  
Sbjct: 141 LIRSFLRAGHPEDALHLFVEMLDD--TAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAF 198

Query: 506 KNRIELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFK 685
           K    +D F+  SLI MYA CGD+  +  +F  +  + + +WNAMI G   +G   E  +
Sbjct: 199 KRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVE 258

Query: 686 IFSMMERNGVMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLL 865
           +F  M       +E+T +++ TA    G A+ G  + +  + + G++        +VD+ 
Sbjct: 259 MFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAE-EKGMLRSRNLATALVDMY 317

Query: 866 GRAGRIEDAFEFVRNMPIEPDKVVWGALLS 955
            + G ++ A      M    D V W A++S
Sbjct: 318 AKCGELDKARRLFDRMH-SRDVVAWSAMIS 346


>gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  454 bits (1168), Expect = e-125
 Identities = 212/480 (44%), Positives = 328/480 (68%), Gaps = 4/480 (0%)
 Frame = +2

Query: 5    RNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSE--DEV 178
            +++VSWNA+ISG+++ G   EAL +F +M+KT ++PD  T+++V+SA + +   E   +V
Sbjct: 161  KDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQV 220

Query: 179  EQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRP 358
               +      +++ +  A++ LY+K G+++ A  +F+ +  KD+V+WN +I GY+     
Sbjct: 221  HSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLY 280

Query: 359  AEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLF-- 532
             EA+ LF+ M      G  P+ VT+VSI+ +CA +GA+ +G W+H YI+K   ++     
Sbjct: 281  KEALLLFQEMLRS---GESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPS 337

Query: 533  LETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNG 712
            L TSLIDMYAKCGD++ + ++F  M  + L+SWNAMI G A+HG+ +  F +FS M +NG
Sbjct: 338  LRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNG 397

Query: 713  VMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDA 892
            + P++ITF+ LL+A SH G    G  +F  M   Y I P++EHYGC++DLLG +G  ++A
Sbjct: 398  IEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEA 457

Query: 893  FEFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYASV 1072
             E ++ MP+EPD V+W +LL ACR H NLELAE  A  L++++P + G+YVLLSN+YA+ 
Sbjct: 458  KEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATA 517

Query: 1073 GKWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKRI 1252
            G+W +V KVRA +  + +KK PGCS++E++  VHEF+ GD+ HPR +EIYG  +E+   +
Sbjct: 518  GEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALL 577

Query: 1253 KPMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDCH 1432
            +  G+VPDT  +L+ ++EE +E A+  HSEKLA+ F LIS+KP T + IVKNLR+C +CH
Sbjct: 578  EEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCH 637



 Score =  162 bits (409), Expect = 4e-37
 Identities = 110/399 (27%), Positives = 189/399 (47%), Gaps = 71/399 (17%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVE 181
            E N + WN ++ G++ +     AL ++  M+   + P++ T   ++ + + +   E E +
Sbjct: 28   EPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFE-EGQ 86

Query: 182  QIVGFA---SLANSISVSTAILSLYAKLGRIDDARRIFD--------------------- 289
            QI G          + V T+++S+YA+ GR++DA ++FD                     
Sbjct: 87   QIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSG 146

Query: 290  ----------EIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVS 439
                      EIP KD+V+WNAMI+GY++     EA+ELF+ M       V+PD  TMV+
Sbjct: 147  NIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMK---TNVRPDEGTMVT 203

Query: 440  IITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRD 619
            ++++CAQ  ++ LG  VH++I+ +    +L +  +LID+Y+KCG ++ +  +F+G++ +D
Sbjct: 204  VLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKD 263

Query: 620  LASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALLTASSHGGLASKGL---V 790
            + SWN +I G        EA  +F  M R+G  PN++T +++L A +H G    G    V
Sbjct: 264  VVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHV 323

Query: 791  LFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIE---------------------------- 886
              D         P +     ++D+  + G IE                            
Sbjct: 324  YIDKKLKDVTNAPSLR--TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHG 381

Query: 887  ------DAFEFVRNMPIEPDKVVWGALLSACRSHQNLEL 985
                  D F  +R   IEPD + +  LLSAC     L+L
Sbjct: 382  RANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDL 420



 Score =  104 bits (259), Expect = 1e-19
 Identities = 74/264 (28%), Positives = 122/264 (46%), Gaps = 31/264 (11%)
 Frame = +2

Query: 281 IFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQ 460
           +F  I E + + WN M+ GY+ +  P  A++L+  M S   +G+ P+  T   ++ SCA+
Sbjct: 22  VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMIS---LGLLPNSYTFPFLLKSCAK 78

Query: 461 MGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDL-------DRS----------- 586
             A   G+ +H ++ K   E DL++ TSLI MYA+ G L       DRS           
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 587 -------------RRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNE 727
                        + MF  +  +D+ SWNAMI G A  G   EA ++F  M +  V P+E
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198

Query: 728 ITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVR 907
            T + +L+A +       G  +   +   +G    ++    ++DL  + G++E A     
Sbjct: 199 GTMVTVLSACAQSRSVELGRQVHSWID-DHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 908 NMPIEPDKVVWGALLSACRSHQNL 979
            +  + D V W  L+    +H NL
Sbjct: 258 GLSCK-DVVSWNTLIGG-YTHMNL 279


>ref|XP_006350917.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
            chloroplastic-like [Solanum tuberosum]
          Length = 744

 Score =  453 bits (1166), Expect = e-125
 Identities = 227/511 (44%), Positives = 330/511 (64%), Gaps = 35/511 (6%)
 Frame = +2

Query: 5    RNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSED---E 175
            R++VSWN +I GF++ G  DEAL +F +M +  ++P+  T+++V+SA  G  L  +    
Sbjct: 201  RDVVSWNTMILGFAEGGYADEALKMFHRMGEENVRPNGVTMMAVLSA-CGKKLDLEFGRW 259

Query: 176  VEQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVT------------- 316
            V   +    +  S+ +  AIL +Y K G I+DA R+F ++ EKDIV+             
Sbjct: 260  VHVFIKRNGIRESLILDNAILDMYMKCGSIEDAERLFHKMGEKDIVSWTTMLVGYARAGN 319

Query: 317  ------------------WNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSI 442
                              WNA+I+ Y Q+ +P EA+ +F  +Q       +PD VT+V  
Sbjct: 320  FNAARSILNTMPSQDIAAWNALISAYEQSGKPKEALSVFNELQ--LIKKAEPDEVTLVCA 377

Query: 443  ITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRDL 622
            +++CAQ+GA+ LG W+H YI+K  I+L+  L T+LIDMY+KCGD++++  MF  +  RD+
Sbjct: 378  LSACAQLGAIDLGGWIHVYIKKQGIKLNCHLTTALIDMYSKCGDVEKALEMFDSVNIRDV 437

Query: 623  ASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALLTASSHGGLASKGLVLFDL 802
              W+AM+ GLA+HG+G EA  +F  M+ + V PN +T I +L A SH GL  +G  +F+ 
Sbjct: 438  FVWSAMVAGLAMHGRGKEAISLFLKMQEHKVKPNSVTLINVLCACSHSGLVEEGREIFNQ 497

Query: 803  MQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVRNMPIEPDKVVWGALLSACRSHQNLE 982
            M+  YGIVP ++HY C+VD+LGRAG +E+A E + NMP+ P   VWGALL AC+ H NLE
Sbjct: 498  MENIYGIVPGVKHYACLVDILGRAGELEEAEELINNMPVTPGPSVWGALLGACKLHGNLE 557

Query: 983  LAEEAAHRLVELDPRHDGNYVLLSNVYASVGKWRDVEKVRARMRAQHVKKTPGCSAVELE 1162
            LAE+A +RLVEL+P + G YVLLSN+YA  GKW +V  +R  M+   +KK PGCS++E+ 
Sbjct: 558  LAEQACNRLVELEPENHGAYVLLSNIYAKSGKWDEVSLLRKHMKECGLKKEPGCSSIEVH 617

Query: 1163 GVVHEFVAGDRSHPRFQEIYGAWDELVKRIKPMGYVPDTGAILRNLDEED-REEAIYRHS 1339
             +VHEF+ GD SHP+ Q+IY   DE+  R+K +GYV +   IL+ ++EED +E+A+  HS
Sbjct: 618  SIVHEFLVGDNSHPQSQKIYAKLDEIAARLKHVGYVSNKSQILQLVEEEDMQEQALNLHS 677

Query: 1340 EKLALTFALISSKPKTPIRIVKNLRICGDCH 1432
            EKLA+ F LIS  P  PIR+VKNLR+C DCH
Sbjct: 678  EKLAMAFGLISVAPSQPIRVVKNLRVCADCH 708



 Score =  147 bits (370), Expect = 1e-32
 Identities = 96/357 (26%), Positives = 171/357 (47%), Gaps = 36/357 (10%)
 Frame = +2

Query: 8    NLVSWNALISGFSQNGQNDEALSIFSQML-KTRIKPDNTTILSVVSA---VSGANLSEDE 175
            NL SWNALI  +S +    +++ +F  M+ + R  P   T   V  A   +         
Sbjct: 99   NLFSWNALIRAYSSSQDPIQSILMFVNMICEGREFPSKFTYPFVFKASAKMKALRFGRGL 158

Query: 176  VEQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQR 355
               +V    +   I V  +++  YA  G +D+A  +F+ +  +D+V+WN MI G+++   
Sbjct: 159  HGMVVKGRDVGLDIFVLNSLIHFYADCGCLDEAYLVFENMQTRDVVSWNTMILGFAEGGY 218

Query: 356  PAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFL 535
              EA+++F RM  E    V+P+GVTM++++++C +   L  G WVH +I++N I   L L
Sbjct: 219  ADEALKMFHRMGEE---NVRPNGVTMMAVLSACGKKLDLEFGRWVHVFIKRNGIRESLIL 275

Query: 536  ETSLIDMYAKCGDLDRSRRMF-------------------------------QGMTTRDL 622
            + +++DMY KCG ++ + R+F                                 M ++D+
Sbjct: 276  DNAILDMYMKCGSIEDAERLFHKMGEKDIVSWTTMLVGYARAGNFNAARSILNTMPSQDI 335

Query: 623  ASWNAMIKGLAIHGKGDEAFKIFSMMER-NGVMPNEITFIALLTASSHGGLASKGLVLFD 799
            A+WNA+I      GK  EA  +F+ ++      P+E+T +  L+A +  G    G  +  
Sbjct: 336  AAWNALISAYEQSGKPKEALSVFNELQLIKKAEPDEVTLVCALSACAQLGAIDLGGWIHV 395

Query: 800  LMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVRNMPIEPDKVVWGALLSACRSH 970
             ++ Q GI         ++D+  + G +E A E   ++ I  D  VW A+++    H
Sbjct: 396  YIKKQ-GIKLNCHLTTALIDMYSKCGDVEKALEMFDSVNIR-DVFVWSAMVAGLAMH 450



 Score =  130 bits (327), Expect = 1e-27
 Identities = 98/321 (30%), Positives = 155/321 (48%), Gaps = 14/321 (4%)
 Frame = +2

Query: 263  IDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSI 442
            +D A ++FDEIP+ ++ +WNA+I  YS +Q P ++I +F  M   C     P   T   +
Sbjct: 85   LDYAHKVFDEIPQPNLFSWNALIRAYSSSQDPIQSILMFVNM--ICEGREFPSKFTYPFV 142

Query: 443  ITSCAQMGALGLGEWVHAYIEKNR-IELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRD 619
              + A+M AL  G  +H  + K R + LD+F+  SLI  YA CG LD +  +F+ M TRD
Sbjct: 143  FKASAKMKALRFGRGLHGMVVKGRDVGLDIFVLNSLIHFYADCGCLDEAYLVFENMQTRD 202

Query: 620  LASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALLTASSHGGLASKGLVLFD 799
            + SWN MI G A  G  DEA K+F  M    V PN +T +A+L+A         G  +  
Sbjct: 203  VVSWNTMILGFAEGGYADEALKMFHRMGEENVRPNGVTMMAVLSACGKKLDLEFGRWVHV 262

Query: 800  LMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVRNMPIEPDKVVWGALLSACRSHQNL 979
             ++ + GI   +     ++D+  + G IEDA      M  E D V W  +L       N 
Sbjct: 263  FIK-RNGIRESLILDNAILDMYMKCGSIEDAERLFHKMG-EKDIVSWTTMLVGYARAGNF 320

Query: 980  ELAEEAAHRLVELDPRHD-GNYVLLSNVYASVGKWRDV----EKVRARMRAQHVKKTPGC 1144
                 AA  ++   P  D   +  L + Y   GK ++      +++   +A+  + T  C
Sbjct: 321  ----NAARSILNTMPSQDIAAWNALISAYEQSGKPKEALSVFNELQLIKKAEPDEVTLVC 376

Query: 1145 S--------AVELEGVVHEFV 1183
            +        A++L G +H ++
Sbjct: 377  ALSACAQLGAIDLGGWIHVYI 397


>ref|XP_006306854.1| hypothetical protein CARUB_v10008399mg [Capsella rubella]
            gi|482575565|gb|EOA39752.1| hypothetical protein
            CARUB_v10008399mg [Capsella rubella]
          Length = 740

 Score =  453 bits (1166), Expect = e-125
 Identities = 210/480 (43%), Positives = 329/480 (68%), Gaps = 4/480 (0%)
 Frame = +2

Query: 5    RNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSE--DEV 178
            +++VSWNALISG+++ G   EAL +F +M++T +KPD +T+++V+SA   +   E   +V
Sbjct: 228  KDVVSWNALISGYAETGNYKEALELFKEMMQTNVKPDESTMVTVLSACGQSASIELGRQV 287

Query: 179  EQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRP 358
               +      +++ +  A++ LY K G ++ A  +F+ +  KD+++WN +I GY+     
Sbjct: 288  HSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLY 347

Query: 359  AEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNR--IELDLF 532
             EA+ LF+ M     +G  P+ VTM+SI+ +CA +GA+ +G W+H YI+K    +     
Sbjct: 348  KEALLLFQEMLR---LGEIPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSS 404

Query: 533  LETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNG 712
            L TSLIDMYAKCGD++ ++++F  M  R L+SWNAMI G A+HG+ + AF IFS M +NG
Sbjct: 405  LRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMGKNG 464

Query: 713  VMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDA 892
            + P++ITF+ LL+A SH G+   G  +F  M   Y I P++EHYGC++DLLG +G  ++A
Sbjct: 465  IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEVYKITPKLEHYGCMIDLLGHSGLFKEA 524

Query: 893  FEFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYASV 1072
             E + +M ++PD V+W +LL AC+ H N+EL E  A  L++++P++ G+YVLLSN+YA+ 
Sbjct: 525  EEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATA 584

Query: 1073 GKWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKRI 1252
            G+W +V K+RA +  + +KK PGCS++E++ VVHEF+ GD+ HPR +EIYG  +E+   +
Sbjct: 585  GRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLL 644

Query: 1253 KPMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDCH 1432
            +  G+VPDT  +L+ ++EE +E A+  HSEKLA+ F LIS+KP T + IVKNLR+C +CH
Sbjct: 645  EEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCH 704



 Score =  157 bits (398), Expect = 8e-36
 Identities = 111/409 (27%), Positives = 191/409 (46%), Gaps = 70/409 (17%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVE 181
            E NL+ WN +  G + +     AL ++  M+   + P++ T   ++ + + +     E +
Sbjct: 95   EPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKSCAKSRAFR-EGQ 153

Query: 182  QIVGFASLAN---SISVSTAILSLYAKLGRIDDARRIFD--------------------- 289
            QI G          + V T+++++Y K GR++DAR++FD                     
Sbjct: 154  QIHGHVLKLGCDLDLYVHTSLIAMYVKNGRLEDARKVFDQSSHRDVVSYTALIKGYASNG 213

Query: 290  ----------EIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVS 439
                      EIP KD+V+WNA+I+GY++     EA+ELF+ M       VKPD  TMV+
Sbjct: 214  YIESAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMQ---TNVKPDESTMVT 270

Query: 440  IITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRD 619
            ++++C Q  ++ LG  VH++I+ +    +L +  +LID+Y KCG+++ +  +F+G++ +D
Sbjct: 271  VLSACGQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKD 330

Query: 620  LASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALLTASSH------------ 763
            + SWN +I G        EA  +F  M R G +PNE+T +++L A +H            
Sbjct: 331  VISWNTLIGGYTHMNLYKEALLLFQEMLRLGEIPNEVTMLSILPACAHLGAIDIGRWIHV 390

Query: 764  ------GGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLL------------------GR 871
                   G+++   +   L+ + Y     IE    V D +                  GR
Sbjct: 391  YIDKRLKGVSNPSSLRTSLIDM-YAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGR 449

Query: 872  AGRIEDAFEFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVEL 1018
            A    D F  +    IEPD + +  LLSAC     L+L       + E+
Sbjct: 450  ANAAFDIFSRMGKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEV 498



 Score =  103 bits (256), Expect = 2e-19
 Identities = 69/264 (26%), Positives = 120/264 (45%), Gaps = 31/264 (11%)
 Frame = +2

Query: 281 IFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQ 460
           +F+ I E +++ WN M  G++ +  P  A+ L+  M S   +G+ P+  T   ++ SCA+
Sbjct: 89  VFESIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMIS---LGLVPNSYTFPFLLKSCAK 145

Query: 461 MGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDLDRSR----------------- 589
             A   G+ +H ++ K   +LDL++ TSLI MY K G L+ +R                 
Sbjct: 146 SRAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRLEDARKVFDQSSHRDVVSYTAL 205

Query: 590 --------------RMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNE 727
                         +MF  +  +D+ SWNA+I G A  G   EA ++F  M +  V P+E
Sbjct: 206 IKGYASNGYIESAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMQTNVKPDE 265

Query: 728 ITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVR 907
            T + +L+A         G  +   +   +G    ++    ++DL  + G +E A     
Sbjct: 266 STMVTVLSACGQSASIELGRQVHSWID-DHGFGSNLKIVNALIDLYIKCGEVETASGLFE 324

Query: 908 NMPIEPDKVVWGALLSACRSHQNL 979
            +  + D + W  L+    +H NL
Sbjct: 325 GLSYK-DVISWNTLIGG-YTHMNL 346


>gb|AEP33760.1| organelle transcript processing 82, partial [Capsella bursa-pastoris]
          Length = 706

 Score =  453 bits (1166), Expect = e-125
 Identities = 210/480 (43%), Positives = 328/480 (68%), Gaps = 4/480 (0%)
 Frame = +2

Query: 5    RNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSE--DEV 178
            +++VSWNALISG+++ G   EAL +F +M+KT +KPD +T+++V+SA + +   E   +V
Sbjct: 198  KDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQV 257

Query: 179  EQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRP 358
               +      +++ +  A++ LY K G ++ A  +F+ +  KD+++WN +I GY+     
Sbjct: 258  HSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLY 317

Query: 359  AEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNR--IELDLF 532
             EA+ LF+ M      G  P+ VTM+SI+ +CA +GA+ +G W+H YI+K    +     
Sbjct: 318  KEALLLFQEMLRS---GESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSS 374

Query: 533  LETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNG 712
            L TSLIDMYAKCGD++ ++++F  M  R L+SWNAMI G A+HG+ + AF IFS M ++G
Sbjct: 375  LRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDG 434

Query: 713  VMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDA 892
            + P++ITF+ LL+A SH G+   G  +F  M   Y I P++EHYGC++DLLG +G  ++A
Sbjct: 435  IEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEA 494

Query: 893  FEFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYASV 1072
             E + +M ++PD V+W +LL AC+ H N+EL E  A  L++++P++ G+YVLLSN+YA+ 
Sbjct: 495  EEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATA 554

Query: 1073 GKWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKRI 1252
            G+W +V K RA +  + +KK PGCS++E++ VVHEF+ GD+ HPR +EIYG  +E+   +
Sbjct: 555  GRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLL 614

Query: 1253 KPMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDCH 1432
            +  G+VPDT  +L+ ++EE +E A+  HSEKLA+ F LIS+KP T + IVKNLR+C +CH
Sbjct: 615  EEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCH 674



 Score =  102 bits (254), Expect = 4e-19
 Identities = 68/264 (25%), Positives = 120/264 (45%), Gaps = 31/264 (11%)
 Frame = +2

Query: 281 IFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQ 460
           +FD I E +++ WN M  G++ +  P  A+ L+  M S   +G+ P+  T   ++ +CA+
Sbjct: 59  VFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMIS---LGLVPNSYTFPFLLKACAK 115

Query: 461 MGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDLDRSRR---------------- 592
             A   G+ +H ++ K   +LDL++ TSLI MY K G  + +R+                
Sbjct: 116 SKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTAL 175

Query: 593 ---------------MFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNE 727
                          MF  +  +D+ SWNA+I G A  G   EA ++F  M +  V P+E
Sbjct: 176 IKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDE 235

Query: 728 ITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVR 907
            T + +L+A +       G  +   +   +G    ++    ++DL  + G +E A     
Sbjct: 236 STMVTVLSACAQSASIELGRQVHSWID-DHGFGSNLKIVNALIDLYIKCGEVETASGLFE 294

Query: 908 NMPIEPDKVVWGALLSACRSHQNL 979
            +  + D + W  L+    +H NL
Sbjct: 295 GLSYK-DVISWNTLIGG-YTHMNL 316


>gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  453 bits (1166), Expect = e-125
 Identities = 213/480 (44%), Positives = 325/480 (67%), Gaps = 4/480 (0%)
 Frame = +2

Query: 5    RNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAV--SGANLSEDEV 178
            +++VSWNA+ISG++  G N EAL +F +M+KT +KPD +T+++VVSA   SG+     +V
Sbjct: 198  KDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQV 257

Query: 179  EQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRP 358
               +    L +++ +  A++ LY+K G ++ A  +F  +  KD+++WN MI GY+     
Sbjct: 258  HSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLY 317

Query: 359  AEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKN--RIELDLF 532
             EA+ LF+ M      G  P+ VTM+SI+ +CAQ+GA+  G W+H YI+K    +     
Sbjct: 318  KEALLLFQEMLRS---GENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASS 374

Query: 533  LETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNG 712
            L TSLIDMYAKCGD++ + ++F  M  R L++ NAMI G A+HG+ + AF IFS M +NG
Sbjct: 375  LRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNG 434

Query: 713  VMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDA 892
            + P++ITF+ LL+A SH G+   G  +F  M   Y I P++EHYGC++DLLG  G  ++A
Sbjct: 435  IEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEA 494

Query: 893  FEFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYASV 1072
             E +  M +EPD V+W +LL AC+ H N+EL E  A +L++++P + G+YVLLSN+YA+ 
Sbjct: 495  EEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATA 554

Query: 1073 GKWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKRI 1252
            G+W +V  +RA +  + +KK PGCS++E++ VVHEF+ GD+ HPR +EIYG  +E+   +
Sbjct: 555  GRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLL 614

Query: 1253 KPMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDCH 1432
            +  G+VPDT  +L+ ++EE ++ A+  HSEKLA+ F LIS+KP T + IVKNLR+C +CH
Sbjct: 615  EEAGFVPDTSEVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCH 674



 Score =  163 bits (413), Expect = 2e-37
 Identities = 113/438 (25%), Positives = 209/438 (47%), Gaps = 72/438 (16%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVE 181
            E NL+ WN +  G + +     A+ ++  M+   + P++ T   ++ + +   +S+ E +
Sbjct: 65   EPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSK-EGQ 123

Query: 182  QIVGFASLAN---SISVSTAILSLYAKLGR------------------------------ 262
            QI G          + V T+++S+Y K GR                              
Sbjct: 124  QIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRG 183

Query: 263  -IDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVS 439
             I+ A+++FDEIP KD+V+WNA+I+GY+      EA++LF+ M       VKPD  TMV+
Sbjct: 184  YIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMK---TNVKPDESTMVT 240

Query: 440  IITSCAQMGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRD 619
            ++++CAQ G++ LG  VH++I+ + +  +L +  +LID+Y+KCG+++ +  +FQG++ +D
Sbjct: 241  VVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKD 300

Query: 620  LASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALLTASSHGGLASKGLVLFD 799
            + SWN MI G        EA  +F  M R+G  PN++T +++L A +  G    G  +  
Sbjct: 301  VISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHV 360

Query: 800  LMQIQY-GIVPRIEHYGCVVDLLGRAGRIE------------------------------ 886
             +  +  G+         ++D+  + G IE                              
Sbjct: 361  YIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRA 420

Query: 887  ----DAFEFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVE---LDPRHDGNYV 1045
                D F  +R   IEPD + +  LLSAC     L+L       + +   + P+ + +Y 
Sbjct: 421  NAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLE-HYG 479

Query: 1046 LLSNVYASVGKWRDVEKV 1099
             + ++   +G +++ E++
Sbjct: 480  CMIDLLGHLGLFKEAEEM 497



 Score =  106 bits (265), Expect = 2e-20
 Identities = 68/270 (25%), Positives = 126/270 (46%), Gaps = 31/270 (11%)
 Frame = +2

Query: 281 IFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQ 460
           +F+ I E +++ WN M  G++ +  P  AI+L+  M S   +G+ P+  T   ++ SCA+
Sbjct: 59  VFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMIS---LGLLPNSYTFPFLLKSCAK 115

Query: 461 MGALGLGEWVHAYIEKNRIELDLFLETSLIDMYAKCGD---------------------- 574
           +     G+ +H ++ K   ELDL++ TSLI MY K G                       
Sbjct: 116 LKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTAL 175

Query: 575 ---------LDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNE 727
                    ++ +++MF  +  +D+ SWNA+I G A  G   EA  +F  M +  V P+E
Sbjct: 176 ITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDE 235

Query: 728 ITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAFEFVR 907
            T + +++A +  G    G  +   +   +G+   ++    ++DL  + G +E A    +
Sbjct: 236 STMVTVVSACAQSGSIQLGRQVHSWID-DHGLGSNLKIVNALIDLYSKCGEVETACGLFQ 294

Query: 908 NMPIEPDKVVWGALLSACRSHQNLELAEEA 997
            +    D + W  ++     + +L L +EA
Sbjct: 295 GLS-NKDVISWNTMIG---GYTHLNLYKEA 320


>emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  453 bits (1166), Expect = e-125
 Identities = 217/479 (45%), Positives = 329/479 (68%), Gaps = 2/479 (0%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVV--SAVSGANLSEDE 175
            ++ +VSW A+I+G  ++ + +E   +F +M +  I P+  T+LS++     +GA     +
Sbjct: 260  QKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQ 319

Query: 176  VEQIVGFASLANSISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQR 355
            +   +     + S++++TA++ +Y K   I +AR +FD    +D++ W AM++ Y+Q   
Sbjct: 320  LHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANC 379

Query: 356  PAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKNRIELDLFL 535
              +A  LF +M++    GV+P  VT+VS+++ CA  GAL LG+WVH+YI+K R+E+D  L
Sbjct: 380  IDQAFNLFDQMRTS---GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCIL 436

Query: 536  ETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGV 715
             T+L+DMYAKCGD++ + R+F    +RD+  WNA+I G A+HG G+EA  IF+ MER GV
Sbjct: 437  NTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGV 496

Query: 716  MPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDAF 895
             PN+ITFI LL A SH GL ++G  LF+ M   +G+VP+IEHYGC+VDLLGRAG +++A 
Sbjct: 497  KPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAH 556

Query: 896  EFVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELDPRHDGNYVLLSNVYASVG 1075
            E +++MPI+P+ +VWGAL++ACR H+N +L E AA +L+E++P + G  VL+SN+YA+  
Sbjct: 557  EMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAAN 616

Query: 1076 KWRDVEKVRARMRAQHVKKTPGCSAVELEGVVHEFVAGDRSHPRFQEIYGAWDELVKRIK 1255
            +W D   VR  M+   +KK PG S +E+ G VHEF+ GD+SHP+ + I     E+ +++ 
Sbjct: 617  RWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLN 676

Query: 1256 PMGYVPDTGAILRNLDEEDREEAIYRHSEKLALTFALISSKPKTPIRIVKNLRICGDCH 1432
              GYVPDT  +L N+DEE++E A+  HSEKLA+ F LIS+ P TPIRIVKNLR+C DCH
Sbjct: 677  EAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCH 735



 Score =  172 bits (435), Expect = 4e-40
 Identities = 114/351 (32%), Positives = 182/351 (51%), Gaps = 11/351 (3%)
 Frame = +2

Query: 2    ERNLVSWNALISGFSQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVE 181
            ER++VSW+ +I   S+N + D AL +  +M   +++P      S V+ VS  NL  D   
Sbjct: 157  ERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRP------SEVAMVSMVNLFADTAN 210

Query: 182  QIVGFAS----LANS------ISVSTAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMI 331
              +G A     + NS      +  +TA+L +YAK G +  AR++F+ + +K +V+W AMI
Sbjct: 211  MRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMI 270

Query: 332  AGYSQNQRPAEAIELFRRMQSECGVGVKPDGVTMVSIITSCAQMGALGLGEWVHAYIEKN 511
            AG  ++ R  E  +LF RMQ E    + P+ +TM+S+I  C   GAL LG+ +HAYI +N
Sbjct: 271  AGCIRSNRLEEGTKLFIRMQEE---NIFPNEITMLSLIVECGFTGALQLGKQLHAYILRN 327

Query: 512  RIELDLFLETSLIDMYAKCGDLDRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIF 691
               + L L T+L+DMY KC D+  +R +F     RD+  W AM+   A     D+AF +F
Sbjct: 328  GFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLF 387

Query: 692  SMMERNGVMPNEITFIALLTASSHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGR 871
              M  +GV P ++T ++LL+  +  G    G  +   +  +   V  I +   +VD+  +
Sbjct: 388  DQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILN-TALVDMYAK 446

Query: 872  AGRIEDAFE-FVRNMPIEPDKVVWGALLSACRSHQNLELAEEAAHRLVELD 1021
             G I  A   F+    I  D  +W A+++    H      EEA     E++
Sbjct: 447  CGDINAAGRLFIE--AISRDICMWNAIITGFAMH---GYGEEALDIFAEME 492



 Score =  137 bits (345), Expect = 1e-29
 Identities = 90/310 (29%), Positives = 156/310 (50%), Gaps = 5/310 (1%)
 Frame = +2

Query: 44  SQNGQNDEALSIFSQMLKTRIKPDNTTILSVVSAVSGANLSEDEVEQIVGFASLANSISV 223
           ++NG +D+ +  F             ++L     VS   L + E+   V    L   + V
Sbjct: 83  NRNGDDDDDVDNFMA----------PSVLKACGQVSWTQLGK-EIHGFVLKKGLDRDVFV 131

Query: 224 STAILSLYAKLGRIDDARRIFDEIPEKDIVTWNAMIAGYSQNQRPAEAIELFRRMQSECG 403
             A++ +Y +   ++ AR +FD++ E+D+V+W+ MI   S+N+    A+EL R M     
Sbjct: 132 GNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNF--- 188

Query: 404 VGVKPDGVTMVSIITSCAQMGALGLGEWVHAYI--EKNRIELDLFLETSLIDMYAKCGDL 577
           + V+P  V MVS++   A    + +G+ +HAY+    N   + +   T+L+DMYAKCG L
Sbjct: 189 MQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHL 248

Query: 578 DRSRRMFQGMTTRDLASWNAMIKGLAIHGKGDEAFKIFSMMERNGVMPNEITFIALLTAS 757
             +R++F G+T + + SW AMI G     + +E  K+F  M+   + PNEIT ++L+   
Sbjct: 249 GLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVEC 308

Query: 758 SHGGLASKGLVLFDLMQIQYGIVPRIEHYGCVVDLLGRAGRIEDA---FEFVRNMPIEPD 928
              G    G  L   + ++ G    +     +VD+ G+   I +A   F+  +N     D
Sbjct: 309 GFTGALQLGKQLHAYI-LRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNR----D 363

Query: 929 KVVWGALLSA 958
            ++W A+LSA
Sbjct: 364 VMIWTAMLSA 373