BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00027706
         (747 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   291   2e-76
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       272   1e-70
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      261   1e-67
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      261   2e-67
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   259   5e-67
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   254   2e-65
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   247   3e-63
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   246   8e-63
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   245   1e-62
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   239   6e-61
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   234   2e-59
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   230   5e-58
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   228   2e-57
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...   227   4e-57
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...   227   4e-57
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   226   7e-57
ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   224   3e-56
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   224   3e-56
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   218   1e-54
ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutr...   218   2e-54

>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  291 bits (745), Expect = 2e-76
 Identities = 149/249 (59%), Positives = 182/249 (73%), Gaps = 1/249 (0%)
 Frame = -1

Query: 744 TVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQRLCYAGSVLKVWDMDHDIVP 565
           TVYALKIR  K  GR   ++AIVQFT +  AE I  L NQRL Y  S LK  +M++DIVP
Sbjct: 31  TVYALKIRQQKNGGR---AYAIVQFTKSTDAELIIRLTNQRLYYGSSYLKAREMENDIVP 87

Query: 564 KPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYKLEL 385
           KPR  +   E + LHFGCQVS++KF  LW+ VDV VNFG G+RKL+FLL+H  VEY+L+L
Sbjct: 88  KPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEVDVTVNFGMGMRKLQFLLSHHCVEYRLDL 147

Query: 384 SYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNPTLNYFRDSVDD-W 208
            YE IWQI+L   +N+  K+LLIQ+  APRIYEK  +  SG  ++NP LNYF D  DD W
Sbjct: 148 FYENIWQIELHRPRNQTSKYLLIQLFGAPRIYEK-DVRSSGLVFENPLLNYFMDVPDDQW 206

Query: 207 VRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDEGRFFLESGSTFSQSLDLV 28
           VR TDFT SSCIGQSS +CLELPY  +LP  RENF  YKE EG+F LESGS++S++L+LV
Sbjct: 207 VRTTDFTQSSCIGQSSVLCLELPYYLQLPNFRENFAYYKESEGKFVLESGSSYSRNLNLV 266

Query: 27  PIVGPPQGL 1
           PIVGP  G+
Sbjct: 267 PIVGPSLGI 275


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  272 bits (695), Expect = 1e-70
 Identities = 142/250 (56%), Positives = 179/250 (71%), Gaps = 1/250 (0%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQRLCYAGSVLKVWDMDHDIV 568
           GTVYA+KIRP+K  G   +S+AIVQF T ++AE I  L N RL Y  S L    M+ DIV
Sbjct: 30  GTVYAIKIRPTKNGGS--RSYAIVQFMTVETAELIIRLANPRLWYGRSYLLARVMERDIV 87

Query: 567 PKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYKLE 388
           PKPRAT+ + + + LHFGCQ+S +KF  LW+  +V V+FG GLR+L F LT+  VEY+L+
Sbjct: 88  PKPRATLYSLQNVTLHFGCQISKEKFSFLWRVGNVSVDFGLGLRRLNFYLTYGPVEYRLQ 147

Query: 387 LSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNPTLNYFRDSVDD- 211
           L YE +WQI+L   + +  K+LLIQ+L APR+YEK  +  S    +NP  NYF+D+ DD 
Sbjct: 148 LLYENVWQIELHRPRGQTAKYLLIQLLGAPRVYEK-EVRISFDILENPLFNYFKDTPDDQ 206

Query: 210 WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDEGRFFLESGSTFSQSLDL 31
           WVRATDFT S CIG SSA+ LELPY   LP +RENF  YKE E RF LESGS+FS++LDL
Sbjct: 207 WVRATDFTESCCIGHSSALYLELPYGVDLPDLRENFVYYKESEERFILESGSSFSRNLDL 266

Query: 30  VPIVGPPQGL 1
           VPIVGPP G+
Sbjct: 267 VPIVGPPSGI 276


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  261 bits (668), Expect = 1e-67
 Identities = 140/245 (57%), Positives = 173/245 (70%), Gaps = 1/245 (0%)
 Frame = -1

Query: 744 TVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQRLCYAGSVLKVWDMDHDIVP 565
           TVYALKIR  K  GR   +FAIVQFT +  A  I  L NQRL Y  S LK  +M+ DIVP
Sbjct: 31  TVYALKIRQHKKSGR---AFAIVQFTRSSDAGLIIRLANQRLYYGRSYLKAREMETDIVP 87

Query: 564 KPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYKLEL 385
           KPR  +   E + ++FGCQVS++KF  LWK  +V +NFG G+RKLEFLL++ + +YKLEL
Sbjct: 88  KPRVFLHTMERVTVNFGCQVSEEKFYVLWKADNVTLNFGTGMRKLEFLLSYCSSKYKLEL 147

Query: 384 SYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNPTLNYFRDSVDD-W 208
            YE IWQI+LR   ++  K LLIQ+  APRIYEK  +  S   +D+P LNYF+D  DD W
Sbjct: 148 FYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEK-EVPASECVFDDPLLNYFKDMPDDQW 206

Query: 207 VRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDEGRFFLESGSTFSQSLDLV 28
           VR TDFT S+CIGQSS + LELP+N +LP  RENF  YKE+EGR  LESGS++S +L LV
Sbjct: 207 VRTTDFTRSNCIGQSSVLWLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLV 266

Query: 27  PIVGP 13
           PIV P
Sbjct: 267 PIVCP 271


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  261 bits (667), Expect = 2e-67
 Identities = 139/245 (56%), Positives = 172/245 (70%), Gaps = 1/245 (0%)
 Frame = -1

Query: 744 TVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQRLCYAGSVLKVWDMDHDIVP 565
           TVYALKIR  K  GR   +FAIVQFT +  A  I  L NQRL Y  S LK  +M+ DIVP
Sbjct: 31  TVYALKIRQHKKSGR---AFAIVQFTRSSDAGLIIRLANQRLYYGRSYLKAREMETDIVP 87

Query: 564 KPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYKLEL 385
           KPR  +   E + ++F C VS++KF  LWK  +V +NFG G+RKLEFLL++ + +YKLEL
Sbjct: 88  KPRVFLHTMERVTVNFDCHVSEEKFYVLWKADNVTLNFGTGMRKLEFLLSYCSSKYKLEL 147

Query: 384 SYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNPTLNYFRDSVDD-W 208
            YE IWQI+LR   ++  K LLIQ+  APRIYEK  +  S   +D+P LNYF+D  DD W
Sbjct: 148 FYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEK-EVPASECVFDDPLLNYFKDMPDDQW 206

Query: 207 VRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDEGRFFLESGSTFSQSLDLV 28
           VR TDFT S+CIGQSS +CLELP+N +LP  RENF  YKE+EGR  LESGS++S +L LV
Sbjct: 207 VRTTDFTRSNCIGQSSVLCLELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLV 266

Query: 27  PIVGP 13
           PIV P
Sbjct: 267 PIVCP 271


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  259 bits (663), Expect = 5e-67
 Identities = 135/253 (53%), Positives = 178/253 (70%), Gaps = 4/253 (1%)
 Frame = -1

Query: 747 GTVYALKIR-PSKTKGRHPKSFAIVQFTTTKSAETIFTLI--NQRLCYAGSVLKVWDMDH 577
           GTVYALK+R P K  GR    +AIVQFTT ++A+TI +L    ++L Y  S L    M+ 
Sbjct: 30  GTVYALKLRTPKKGVGR---LYAIVQFTTKEAADTIISLACRTEKLWYGRSYLNARRMEQ 86

Query: 576 DIVPKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEY 397
           D VP+PR  M   E I LHFGC++S++KF  LW+GV+V VNFGFG+RK+ FLL+H   EY
Sbjct: 87  DTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEY 146

Query: 396 KLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNPTLNYFRDSV 217
           +LEL YE IW+I+L   + +  K+LLIQ+L APRI++K    P    Y++P  N+F++  
Sbjct: 147 RLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPD-LLYESPVFNFFKEVP 205

Query: 216 DD-WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDEGRFFLESGSTFSQS 40
           DD WVR TDFT S+ IGQS+ +C+ELPY  +LP  +ENF  YKE E RF LE+GS +S+S
Sbjct: 206 DDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRS 265

Query: 39  LDLVPIVGPPQGL 1
           LDLVPIVGPP G+
Sbjct: 266 LDLVPIVGPPDGI 278


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
           family protein [Populus trichocarpa]
          Length = 1133

 Score =  254 bits (650), Expect = 2e-65
 Identities = 134/250 (53%), Positives = 171/250 (68%), Gaps = 1/250 (0%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQRLCYAGSVLKVWDMDHDIV 568
           GTV ALKIR  +T G   + +AIVQFTTT++AE I +L N RL Y  S L    MD DI+
Sbjct: 30  GTVEALKIREIRTGGA--RKYAIVQFTTTRAAEQIISLANPRLWYGHSYLNARPMDRDII 87

Query: 567 PKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYKLE 388
           P+PR+ +   E + LHFG Q S +KF A+W G +V VNFG G+RKL F L+H   EYKL 
Sbjct: 88  PQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGNNVSVNFGLGMRKLHFFLSHNLAEYKLN 147

Query: 387 LSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNPTLNYFRDSVDD- 211
           L +E IWQI+L   + +  K+LLIQ+  APRIYE+  +  S + +++P LNYFRD  D+ 
Sbjct: 148 LLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYER-DVPSSSNVFEDPLLNYFRDVPDEQ 206

Query: 210 WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDEGRFFLESGSTFSQSLDL 31
           WVR TDFT S  IG SS++CLELP + +LP   ENF  YKE+EG F LESG TFS++ DL
Sbjct: 207 WVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNENFFYYKENEGTFVLESGLTFSRNPDL 266

Query: 30  VPIVGPPQGL 1
           VPIVGP  G+
Sbjct: 267 VPIVGPSSGV 276


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  247 bits (631), Expect = 3e-63
 Identities = 131/250 (52%), Positives = 174/250 (69%), Gaps = 2/250 (0%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQRLCYAGSVLKVWDMDHDIV 568
           GT+ AL+I+  ++      + A VQFT+ + AE I TL  +++ Y  + LK  +MD DI+
Sbjct: 30  GTIEALEIKQPRSGAS--MTHAKVQFTSFELAEFIITLCKKKVWYGRNYLKAREMDLDII 87

Query: 567 PKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYKLE 388
           PKPRA + + + I LHFGCQ+SD++F  LWK ++V V FG GLRK  F L+H + EYKLE
Sbjct: 88  PKPRAFLHSMDRITLHFGCQMSDERFCVLWKAINVSVKFGSGLRKFYFFLSHGSEEYKLE 147

Query: 387 LSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNPTLN-YFRDSVDD 211
           LSYE IWQIQL++ + +  KFLLIQ+L AP+IYEK          D P L+ YF+++ DD
Sbjct: 148 LSYENIWQIQLQHPRGQITKFLLIQLLGAPQIYEK----------DVPVLSYYFKEAPDD 197

Query: 210 -WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDEGRFFLESGSTFSQSLD 34
            WVR  DFT S  IGQS A+CLELPY  +LP  RENF  YKE++G+F LESGS++S +L 
Sbjct: 198 QWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLH 257

Query: 33  LVPIVGPPQG 4
           LVPI+GPPQG
Sbjct: 258 LVPILGPPQG 267


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca
           subsp. vesca]
          Length = 1119

 Score =  246 bits (627), Expect = 8e-63
 Identities = 126/249 (50%), Positives = 171/249 (68%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQRLCYAGSVLKVWDMDHDIV 568
           G+V+ALK+RP+K+ GR    +AI+QF +   AE I +L N RL Y  S L      HDIV
Sbjct: 30  GSVFALKLRPAKSGGRF---YAIIQFQSISQAEKIISLANARLWYGRSYLNARPA-HDIV 85

Query: 567 PKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYKLE 388
           PKPR  + +   ++LH GCQV+ DKF  LW   +V V+FGFG+R L+F L +R   Y+L+
Sbjct: 86  PKPRTFLHSLRDLVLHVGCQVAKDKFSVLWGTAEVSVDFGFGMRNLQFRLLYRQKVYRLQ 145

Query: 387 LSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNPTLNYFRDSVDDW 208
           LSYE IWQI+L +Q+ R+ K+L+IQ+   PRIY++      G+ Y++  +NYFRD  DDW
Sbjct: 146 LSYENIWQIELHHQRGRSAKYLVIQLYGNPRIYQQEVCSSGGNGYED--MNYFRDP-DDW 202

Query: 207 VRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDEGRFFLESGSTFSQSLDLV 28
           VR TDFT  SCIGQSS++CL L  + +LP   ENF  YK+ +G+F LE+GSTFS++ DLV
Sbjct: 203 VRTTDFTPGSCIGQSSSLCLVLTSDGELPDFEENFAYYKKTDGQFILENGSTFSRNRDLV 262

Query: 27  PIVGPPQGL 1
           PIVG P G+
Sbjct: 263 PIVGSPAGI 271


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
           max] gi|571439308|ref|XP_006574822.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
           max] gi|571439310|ref|XP_006574823.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
           max]
          Length = 1125

 Score =  245 bits (626), Expect = 1e-62
 Identities = 126/253 (49%), Positives = 175/253 (69%), Gaps = 4/253 (1%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLIN---QRLCYAGSVLKVWDMDH 577
           GTV+A+K+R  K  GR P++FAI+QFTT  SA ++ +  N   + L Y  S LK  +M+ 
Sbjct: 30  GTVFAIKLRHGK--GRVPRAFAIIQFTTANSATSMMSRANNILRTLRYGTSYLKAREMER 87

Query: 576 DIVPKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEY 397
           DIVP+PR  + + + + L FGCQ+S  +F  LWK  DV+VNFG G+RK+ FL +H NV+Y
Sbjct: 88  DIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLWKKQDVIVNFGSGMRKMHFLFSHNNVQY 147

Query: 396 KLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNPTLNYFRDSV 217
           KLELSYE IW+I+L   +N   ++LLIQ+L APR++E   +  S + +D+P  N+F+D+ 
Sbjct: 148 KLELSYENIWKIELHRPRNETTRYLLIQLLGAPRVFEN-DVPTSTNIFDDPLFNFFKDAP 206

Query: 216 DD-WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDEGRFFLESGSTFSQS 40
           D+ W+RA DFT  S IGQSSAICLELP   +LP  RENF  Y+E E ++ L++G  FSQ+
Sbjct: 207 DEQWIRAIDFTPESRIGQSSAICLELPNGRQLPNFRENFAYYEESERQYTLQTGVPFSQN 266

Query: 39  LDLVPIVGPPQGL 1
             LVPIV PP G+
Sbjct: 267 WGLVPIVAPPLGV 279


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  239 bits (611), Expect = 6e-61
 Identities = 131/249 (52%), Positives = 170/249 (68%), Gaps = 1/249 (0%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQRLCYAGSVLKVWDMDHDIV 568
           GT+ AL+I+  + K     + A VQFT+ + AE I +L  Q L Y G+ LK  +MD DI+
Sbjct: 30  GTIEALEIK--QPKSGVSMTHAKVQFTSLRLAELIISLAKQ-LWYGGNYLKAREMDLDII 86

Query: 567 PKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYKLE 388
           PKPR  + + + I LHFG Q+S+++F  LWK ++V V FGFGLRK  F L+H + EYKLE
Sbjct: 87  PKPRTFLHSMDRITLHFGYQMSNERFCVLWKAINVSVKFGFGLRKFYFFLSHGSEEYKLE 146

Query: 387 LSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNPTLNYFRDSVDD- 211
           LS E IWQIQLR  + +N KFLLIQ+L AP+IYEK          D   L+YF+++ DD 
Sbjct: 147 LSCENIWQIQLREPRGQNTKFLLIQLLDAPQIYEK----------DVSALSYFKETPDDQ 196

Query: 210 WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDEGRFFLESGSTFSQSLDL 31
           WVR  DFT S  IGQSSA+CLELP+  +LP   ENF  YKE++ +F LESG++FS +L L
Sbjct: 197 WVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHL 256

Query: 30  VPIVGPPQG 4
           VPIVGPPQG
Sbjct: 257 VPIVGPPQG 265


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
           gi|548853371|gb|ERN11375.1| hypothetical protein
           AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  234 bits (598), Expect = 2e-59
 Identities = 129/249 (51%), Positives = 167/249 (67%), Gaps = 3/249 (1%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQ--RLCYAGSVLKVWDMDHD 574
           GTVY LKIR  K+K  + + FAIVQFTT+KSAE I++L  Q   L +  S + V  M++D
Sbjct: 103 GTVYHLKIRIHKSKP-NSRVFAIVQFTTSKSAEVIYSLAPQPKSLYFGNSYVIVRYMEND 161

Query: 573 IVPKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYK 394
           IVP PR T    E I L+FG Q+S++ F  LW   +V V FGFGL+K+ F L H  V+YK
Sbjct: 162 IVPNPRVTYHVLESIQLYFGNQISEESFAILWSNTNVKVEFGFGLKKIFFYLAHTGVDYK 221

Query: 393 LELSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNPTLNYFRDSVD 214
           L+L YE IWQIQLR       ++L++Q+  APRI++KP  F S   YD+P  NY++D  D
Sbjct: 222 LDLYYENIWQIQLRRPGTEGTRYLVLQMQGAPRIFQKPLSF-SSDIYDSPLFNYYKDFPD 280

Query: 213 D-WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDEGRFFLESGSTFSQSL 37
           + WVR+ DFT S  IGQSS++CL LP   ++P IRENF  YKE  G F L++GS+FS SL
Sbjct: 281 EQWVRSIDFTPSCSIGQSSSLCLALPNGTRIPNIRENFAYYKEIGGAFNLKTGSSFSHSL 340

Query: 36  DLVPIVGPP 10
            LVPIV PP
Sbjct: 341 HLVPIVHPP 349


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
           gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
           1a [Cucumis sativus]
          Length = 1130

 Score =  230 bits (586), Expect = 5e-58
 Identities = 125/245 (51%), Positives = 167/245 (68%), Gaps = 2/245 (0%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQRLCYAGSVLKVWDMDHDIV 568
           GTVYA+K+RP K  G   + +AIVQFT+   AE I +L NQRL Y  S LK    + DIV
Sbjct: 30  GTVYAIKVRPPKRGGG--RLYAIVQFTSATQAELIISLANQRLWYGSSYLKARATEVDIV 87

Query: 567 PKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYKLE 388
           PKPR  M   E ++L FGCQVS +KF  LW+G   +V FG G+RK+ F L +++VEY+LE
Sbjct: 88  PKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGNVDLVTFGIGMRKMNFHLKYKSVEYRLE 147

Query: 387 LSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNPTLNYFRDSVDD- 211
           LSYE IWQIQL   ++++ K+LLIQ+  APRIY+K +   SG  +DNP LN+F+++ DD 
Sbjct: 148 LSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIYKKVAP-NSGQIFDNPLLNFFKEASDDQ 206

Query: 210 WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDEGRF-FLESGSTFSQSLD 34
           WVR TDFT+S  IGQSS++CL+LP   +LP  ++NF  Y+E E  F  ++  + FS   D
Sbjct: 207 WVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRD 266

Query: 33  LVPIV 19
           L PIV
Sbjct: 267 LAPIV 271


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  228 bits (581), Expect = 2e-57
 Identities = 125/258 (48%), Positives = 164/258 (63%), Gaps = 10/258 (3%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFT-LINQRLCYAGSVLKVWDMDHDI 571
           GTVYA+K+R  K  G  P+ FAIVQFT  + A  I T    +RL Y  S L  +++D DI
Sbjct: 30  GTVYAIKVRQPKKGG--PRVFAIVQFTNERYARQIITGAAERRLYYGRSYLNAFEVDQDI 87

Query: 570 VPKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYKL 391
           VPKPRA++ N   + ++FGCQVS  KFL LW   DV V+FG G+RKL F  +    +Y+L
Sbjct: 88  VPKPRASLHNISGLKMYFGCQVSTQKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRL 147

Query: 390 ELSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNP------TLNYF 229
           ELSYE IWQI L   Q R+ KFL+IQV+ AP+I+EK          D P       ++++
Sbjct: 148 ELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKE---------DQPINLLFGMMDFY 198

Query: 228 RDSVDD-WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDEGR-FFLESGS 55
            D  D+ W+R TDFT+SSCIGQS+A CLELP +  +P  RENF NY E     F +ESGS
Sbjct: 199 SDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASPFLIESGS 258

Query: 54  TFSQSLD-LVPIVGPPQG 4
           ++S + + LVP+V PP G
Sbjct: 259 SYSSNANKLVPVVDPPPG 276


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  227 bits (578), Expect = 4e-57
 Identities = 122/257 (47%), Positives = 163/257 (63%), Gaps = 9/257 (3%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQRLCYAGSVLKVWDMDHDIV 568
           GTVYA+K+R  K  G  P+ +AIVQFT+ +    I T   +RL Y  S LK ++++ DIV
Sbjct: 30  GTVYAIKVRQPKKGG--PRVYAIVQFTSERHTRLIITAAAERLYYGRSYLKAFEVEQDIV 87

Query: 567 PKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYKLE 388
           PKPRA++     + + FGCQVS  KFL LW   DV V+FG G+RKL F  +    +Y+LE
Sbjct: 88  PKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLE 147

Query: 387 LSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNP------TLNYFR 226
           LSYE IWQI L   Q R+ KFL+IQV+ AP+I+EK          D P       ++++ 
Sbjct: 148 LSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKE---------DQPINLLFGIMDFYS 198

Query: 225 DSVDD-WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDE-GRFFLESGST 52
           D  D+ W+R TDFT+SSCIGQS+A CLELP +  +P  RENF NY E     F +ESGS+
Sbjct: 199 DGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSS 258

Query: 51  FSQSLD-LVPIVGPPQG 4
           +S + + LVP+V PP G
Sbjct: 259 YSSNANTLVPVVDPPPG 275


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
           gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
           Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
           AltName: Full=RNA-directed RNA polymerase 1
           gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
           [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
           putative RNA-directed RNA polymerase [Arabidopsis
           thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
           polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  227 bits (578), Expect = 4e-57
 Identities = 122/257 (47%), Positives = 163/257 (63%), Gaps = 9/257 (3%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQRLCYAGSVLKVWDMDHDIV 568
           GTVYA+K+R  K  G  P+ +AIVQFT+ +    I T   +RL Y  S LK ++++ DIV
Sbjct: 30  GTVYAIKVRQPKKGG--PRVYAIVQFTSERHTRLIITAAAERLYYGRSYLKAFEVEQDIV 87

Query: 567 PKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYKLE 388
           PKPRA++     + + FGCQVS  KFL LW   DV V+FG G+RKL F  +    +Y+LE
Sbjct: 88  PKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLE 147

Query: 387 LSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNP------TLNYFR 226
           LSYE IWQI L   Q R+ KFL+IQV+ AP+I+EK          D P       ++++ 
Sbjct: 148 LSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKE---------DQPINLLFGIMDFYS 198

Query: 225 DSVDD-WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDE-GRFFLESGST 52
           D  D+ W+R TDFT+SSCIGQS+A CLELP +  +P  RENF NY E     F +ESGS+
Sbjct: 199 DGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSS 258

Query: 51  FSQSLD-LVPIVGPPQG 4
           +S + + LVP+V PP G
Sbjct: 259 YSSNANTLVPVVDPPPG 275


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
           gi|482575337|gb|EOA39524.1| hypothetical protein
           CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  226 bits (576), Expect = 7e-57
 Identities = 122/254 (48%), Positives = 167/254 (65%), Gaps = 6/254 (2%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQRLCYAGSVLKVWDMDHDIV 568
           GTVYA+K+R  K  G  P+ FAIVQFT+ + A  I T+  +RL Y  S LK ++M+ DIV
Sbjct: 30  GTVYAIKVRQPKRGG--PRVFAIVQFTSERHARLIITMAAERLYYGRSYLKAFEMEQDIV 87

Query: 567 PKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYKLE 388
           PKPRA++ +   + ++FGCQVS  K L LW   +V V+FG G+RKL F ++    +Y+LE
Sbjct: 88  PKPRASLHSISNLKMYFGCQVSPKKLLTLWSAHNVCVSFGTGMRKLHFSMSWYQKDYRLE 147

Query: 387 LSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEK---PSLFPSGHSYDNPTLNYFRDSV 217
           LSYE IWQI L   Q  + KFL+IQV+ AP+I+EK   P  F  G       ++++ D  
Sbjct: 148 LSYENIWQIDLHSPQGGSSKFLVIQVIGAPKIFEKEDQPVNFLFG------MMDFYSDGS 201

Query: 216 DD-WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDE-GRFFLESGSTFSQ 43
           D+ W+R TDFT+SSCIGQS+A CLELP +  +P  RENF NY E     F ++SGS++S 
Sbjct: 202 DEQWIRTTDFTSSSCIGQSTAFCLELPVHVHVPDFRENFANYAEHRASTFLIQSGSSYSS 261

Query: 42  SLD-LVPIVGPPQG 4
           + + LVP+V PP G
Sbjct: 262 NANKLVPVVDPPPG 275


>ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Cicer
           arietinum]
          Length = 1100

 Score =  224 bits (570), Expect = 3e-56
 Identities = 118/254 (46%), Positives = 167/254 (65%), Gaps = 5/254 (1%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQR---LCYAGSVLKVWDMDH 577
           G+V A+KIR  K   R  +++AI+QF T   A  + +L N+    L Y  S LK+ +M  
Sbjct: 32  GSVVAIKIREGKA--RVQRAYAIIQFNTANQATHMLSLHNRSSTMLRYGNSYLKIREMVR 89

Query: 576 DIVPKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEY 397
           DIVP PR  + + + + L+FGCQ+S ++F  LW+  DV V+   G+RK  F + H N ++
Sbjct: 90  DIVPNPRTYLESLDDVTLYFGCQISKERFSILWRKRDVSVDLSAGMRKWRFCMCHDNKKF 149

Query: 396 KLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYE-KPSLFPSGHSYDNPTLNYFRDS 220
           K +LSYE IW+I+      +  K+LLIQ++ APRI+E       S + Y++P  NYF++S
Sbjct: 150 KFDLSYENIWKIEQYQPWGKTAKYLLIQLIGAPRIFELYVPTSTSTNVYEDPLKNYFKES 209

Query: 219 VDD-WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDEGRFFLESGSTFSQ 43
            DD W+RA DFT  +CIGQSSAICLELP +   P IRE F +Y+E+EG++ LESGS FS 
Sbjct: 210 PDDQWIRAVDFTPFNCIGQSSAICLELPCDRDFPNIREYFVHYQENEGQYTLESGSPFSH 269

Query: 42  SLDLVPIVGPPQGL 1
           +LD+VPIV PPQG+
Sbjct: 270 NLDVVPIVAPPQGI 283


>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
           arietinum]
          Length = 1126

 Score =  224 bits (570), Expect = 3e-56
 Identities = 118/254 (46%), Positives = 167/254 (65%), Gaps = 5/254 (1%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQR---LCYAGSVLKVWDMDH 577
           G+V A+KIR  K   R  +++AI+QF T   A  + +L N+    L Y  S LK+ +M  
Sbjct: 32  GSVVAIKIREGKA--RVQRAYAIIQFNTANQATHMLSLHNRSSTMLRYGNSYLKIREMVR 89

Query: 576 DIVPKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEY 397
           DIVP PR  + + + + L+FGCQ+S ++F  LW+  DV V+   G+RK  F + H N ++
Sbjct: 90  DIVPNPRTYLESLDDVTLYFGCQISKERFSILWRKRDVSVDLSAGMRKWRFCMCHDNKKF 149

Query: 396 KLELSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYE-KPSLFPSGHSYDNPTLNYFRDS 220
           K +LSYE IW+I+      +  K+LLIQ++ APRI+E       S + Y++P  NYF++S
Sbjct: 150 KFDLSYENIWKIEQYQPWGKTAKYLLIQLIGAPRIFELYVPTSTSTNVYEDPLKNYFKES 209

Query: 219 VDD-WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDEGRFFLESGSTFSQ 43
            DD W+RA DFT  +CIGQSSAICLELP +   P IRE F +Y+E+EG++ LESGS FS 
Sbjct: 210 PDDQWIRAVDFTPFNCIGQSSAICLELPCDRDFPNIREYFVHYQENEGQYTLESGSPFSH 269

Query: 42  SLDLVPIVGPPQGL 1
           +LD+VPIV PPQG+
Sbjct: 270 NLDVVPIVAPPQGI 283


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
           gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
           1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  218 bits (556), Expect = 1e-54
 Identities = 121/258 (46%), Positives = 161/258 (62%), Gaps = 10/258 (3%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFT-LINQRLCYAGSVLKVWDMDHDI 571
           GTVYA+K+R  K  G  P+ FAIVQFT    A  I T    +RL Y  S L  ++++ DI
Sbjct: 30  GTVYAIKVRQPKKGG--PRVFAIVQFTNEIYARQIITGAAERRLYYGRSYLNAFEVEQDI 87

Query: 570 VPKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYKL 391
           VPKPRA++ N   + ++FGCQVS    L LW   DV V+FG G+RKL F  +    +Y+L
Sbjct: 88  VPKPRASLHNISGLKMYFGCQVSTQTLLTLWSAQDVSVSFGIGMRKLHFSFSWYQKDYRL 147

Query: 390 ELSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNP------TLNYF 229
           ELSYE IWQI L   Q R+ KFL+IQV+ AP+I+EK          D P       ++++
Sbjct: 148 ELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKE---------DQPINLLFGMMDFY 198

Query: 228 RDSVDD-WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDE-GRFFLESGS 55
            D  D+ W+R TDFT+SSCIGQS+A CLELP +  +P  RENF NY E     + +ESGS
Sbjct: 199 SDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEHRASTYLIESGS 258

Query: 54  TFSQSLD-LVPIVGPPQG 4
           ++S + + LVP+V PP G
Sbjct: 259 SYSSNANKLVPVVDPPPG 276


>ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum]
           gi|557094740|gb|ESQ35322.1| hypothetical protein
           EUTSA_v10006629mg [Eutrema salsugineum]
          Length = 1108

 Score =  218 bits (554), Expect = 2e-54
 Identities = 120/257 (46%), Positives = 160/257 (62%), Gaps = 9/257 (3%)
 Frame = -1

Query: 747 GTVYALKIRPSKTKGRHPKSFAIVQFTTTKSAETIFTLINQRLCYAGSVLKVWDMDHDIV 568
           GTVYA+K+R  K  G  P+ +AIVQFT  + A  I T   + L Y  S LK  +++ DIV
Sbjct: 30  GTVYAIKVRQPKKGG--PRVYAIVQFTNERHARWIITRAEEGLYYGRSYLKASEVEQDIV 87

Query: 567 PKPRATMPNSEVIILHFGCQVSDDKFLALWKGVDVVVNFGFGLRKLEFLLTHRNVEYKLE 388
           PKPRA++     + ++FGCQV+  K   LW   +V V+FG G+RKL F ++    +Y+LE
Sbjct: 88  PKPRASLHKISDLKIYFGCQVTPKKLSVLWSAQNVCVSFGTGMRKLHFSISWYEKDYRLE 147

Query: 387 LSYERIWQIQLRYQQNRNKKFLLIQVLAAPRIYEKPSLFPSGHSYDNPT------LNYFR 226
           L YE IW+I L   Q R  KFL+IQV+ AP+I+EK          D P       L++F 
Sbjct: 148 LPYENIWRIDLYSPQGRASKFLVIQVIGAPKIFEKE---------DQPVNLLFGMLDFFS 198

Query: 225 DSVDD-WVRATDFTTSSCIGQSSAICLELPYNCKLPGIRENFHNYKEDE-GRFFLESGST 52
           D  D+ W+R TDFT+SSCIGQSS+ CLELP    +P  RENF NY E E G F +ESGS+
Sbjct: 199 DGSDEQWIRTTDFTSSSCIGQSSSFCLELPRQLNVPDFRENFANYAEHEAGTFLIESGSS 258

Query: 51  F-SQSLDLVPIVGPPQG 4
           + S + +LVP+V PP G
Sbjct: 259 YSSDATNLVPVVDPPPG 275