BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00026421
         (1378 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16226.3| unnamed protein product [Vitis vinifera]              592   e-166
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   592   e-166
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao...   567   e-159
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...   545   e-152
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr...   535   e-149
ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phas...   511   e-142
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...   509   e-142
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s...   506   e-140
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...   503   e-139
ref|XP_007208145.1| hypothetical protein PRUPE_ppa024521mg, part...   498   e-138
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...   495   e-137
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s...   491   e-136
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...   491   e-136
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...   483   e-134
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s...   483   e-133
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...   479   e-133
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo...   478   e-132
gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus...   476   e-132
tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family...   470   e-130
ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arab...   470   e-130

>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  592 bits (1526), Expect = e-166
 Identities = 295/403 (73%), Positives = 342/403 (84%), Gaps = 9/403 (2%)
 Frame = -3

Query: 1184 VQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLL 1005
            ++D +QFTKEPYIEDVGPRKI+SI+F++FS +EI KAAEVQVWRG +YD+ RKPIENGLL
Sbjct: 1    MKDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLL 60

Query: 1004 DSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARIL 825
            D  MGPANK+G CATC G+F  CPGH GYL L LPV+NVGY S+I+DILK ICKSC+R+L
Sbjct: 61   DPRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVL 120

Query: 824  LPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP--------TCHRCGYVNGGVKKAG 669
            L EK  +DYLKKMRS KME+L+K+ L K+IV+KC           C RCGY+NG VKKA 
Sbjct: 121  LDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAV 180

Query: 668  SMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELL 489
            S+LGIIHDRSKI DG+ EEC SAISH KESKASF VV +LNPV+VLSLF+RM+DEDC+LL
Sbjct: 181  SVLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLL 240

Query: 488  YLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDLQCTA 312
             L +RPEKL++T+I VPPI+IRPSVFMD G +SNE+D+T RL  II  NASL Q+LQ T 
Sbjct: 241  NLAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTG 300

Query: 311  PTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRV 132
             TSKCLA W+ LQIEVAQYINSDVRGVP +MQ A+PL GF+QRLKGKQGRFRGNLSGKRV
Sbjct: 301  STSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRV 360

Query: 131  EYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            EYTGRTVISPDPNLKITEVAIPILMA+IL+YPERVS+HNIEKL
Sbjct: 361  EYTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKL 403


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score =  592 bits (1526), Expect = e-166
 Identities = 295/403 (73%), Positives = 342/403 (84%), Gaps = 9/403 (2%)
 Frame = -3

Query: 1184 VQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLL 1005
            ++D +QFTKEPYIEDVGPRKI+SI+F++FS +EI KAAEVQVWRG +YD+ RKPIENGLL
Sbjct: 1    MKDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLL 60

Query: 1004 DSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARIL 825
            D  MGPANK+G CATC G+F  CPGH GYL L LPV+NVGY S+I+DILK ICKSC+R+L
Sbjct: 61   DPRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVL 120

Query: 824  LPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP--------TCHRCGYVNGGVKKAG 669
            L EK  +DYLKKMRS KME+L+K+ L K+IV+KC           C RCGY+NG VKKA 
Sbjct: 121  LDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAV 180

Query: 668  SMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELL 489
            S+LGIIHDRSKI DG+ EEC SAISH KESKASF VV +LNPV+VLSLF+RM+DEDC+LL
Sbjct: 181  SVLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLL 240

Query: 488  YLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDLQCTA 312
             L +RPEKL++T+I VPPI+IRPSVFMD G +SNE+D+T RL  II  NASL Q+LQ T 
Sbjct: 241  NLAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTG 300

Query: 311  PTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRV 132
             TSKCLA W+ LQIEVAQYINSDVRGVP +MQ A+PL GF+QRLKGKQGRFRGNLSGKRV
Sbjct: 301  STSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRV 360

Query: 131  EYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            EYTGRTVISPDPNLKITEVAIPILMA+IL+YPERVS+HNIEKL
Sbjct: 361  EYTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKL 403


>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 1395

 Score =  567 bits (1462), Expect = e-159
 Identities = 289/399 (72%), Positives = 329/399 (82%), Gaps = 8/399 (2%)
 Frame = -3

Query: 1175 QLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSH 996
            Q +FTK PYIEDVGPRKIKSI+FSM S +EI KAAEVQV++  +YD   +PIE GLLD  
Sbjct: 2    QQKFTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPR 61

Query: 995  MGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 816
            MGPANKSG CATCHG+FA CPGH+GYL+L LPV+NVGY S+I+DILK ICKSC+RI+L E
Sbjct: 62   MGPANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDE 121

Query: 815  KLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKPT-------CHRCGYVNGGVKKAGSMLG 657
            KL +DYLK+MRS K+++L+K  + K IVKKC          C RCGYVNG VKKA +MLG
Sbjct: 122  KLCKDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLG 181

Query: 656  IIHDRSKIVDGTWEECKSAISHIKESKASFHVV-HLLNPVRVLSLFRRMLDEDCELLYLW 480
            IIHDRSKI D + EE +SAISH KESKASF+V  ++LNPV+VLSLF+RM D DCELLYL 
Sbjct: 182  IIHDRSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLS 241

Query: 479  DRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSK 300
            DRPEKLIIT+IAVPPI IRPSV MD  +SNE+DIT RL  II  NASLRQ+L  T    K
Sbjct: 242  DRPEKLIITNIAVPPIPIRPSVIMDGSQSNENDITERLKRIIQANASLRQELVETNAAFK 301

Query: 299  CLADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTG 120
            CL  WE+LQ+EVAQYINSDVRGVP SMQ +KPL GF+QR+KGK GRFRGNLSGKRVEYTG
Sbjct: 302  CLGGWEMLQVEVAQYINSDVRGVPFSMQVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYTG 361

Query: 119  RTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            RTVISPDPNLKITEVAIPI MA+ILTYPERVSNHNIEKL
Sbjct: 362  RTVISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKL 400


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score =  545 bits (1404), Expect = e-152
 Identities = 279/407 (68%), Positives = 326/407 (80%), Gaps = 7/407 (1%)
 Frame = -3

Query: 1202 SQHMAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKP 1023
            +Q +      + FTK+PYIEDVGPRKI+SI+FSM S +EI KAAEVQV++G +Y S R P
Sbjct: 2    TQQLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVP 61

Query: 1022 IENGLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICK 843
            IE GLLD  MGPANKS  CATCHG F+ CPGH+GYL L LPV+NVGY S+I+DILK ICK
Sbjct: 62   IEGGLLDPRMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCICK 121

Query: 842  SCARILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKPT------CHRCGYVNGGV 681
             C+R+LL EKL +DYLKKMR+ KME+L+K+ L K IVKKC         C RCGY+NG V
Sbjct: 122  YCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMV 181

Query: 680  KKAGSMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHVV-HLLNPVRVLSLFRRMLDE 504
            KKA ++LGIIHDRSK+ +   +E  SAI+H KESKA+ +V  ++LNPV VL LF+RM D 
Sbjct: 182  KKAVAVLGIIHDRSKVTESL-QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDT 240

Query: 503  DCELLYLWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDL 324
            DCE+LYL +RPEKLIIT+IAVPPI+IRPSV MD  +SNE+DIT RL  II TNASL+Q+L
Sbjct: 241  DCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQEL 300

Query: 323  QCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLS 144
                   K LA WE LQ+EVAQYINSDVRGVP SMQ A+PL GF+QRLKGKQGRFRGNLS
Sbjct: 301  VEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLS 360

Query: 143  GKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            GKRVEYTGRTVISPDPNLKITEVAIPI MA+ILTYPERVS+HNIEKL
Sbjct: 361  GKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKL 407


>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
            gi|557526635|gb|ESR37941.1| hypothetical protein
            CICLE_v10027681mg [Citrus clementina]
          Length = 1397

 Score =  535 bits (1378), Expect = e-149
 Identities = 279/422 (66%), Positives = 326/422 (77%), Gaps = 22/422 (5%)
 Frame = -3

Query: 1202 SQHMAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKP 1023
            +Q +      + FTK+PYIEDVGPRKI+SI+FSM S +EI KAAEVQV++G +Y S R P
Sbjct: 2    TQQLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVP 61

Query: 1022 IENGLLDSHM---------------GPANKSGICATCHGSFAACPGHFGYLNLVLPVFNV 888
            IE GLLD  M               GPANKS  CATCHG F+ CPGH+GYL L LPV+NV
Sbjct: 62   IEGGLLDPRMEKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNV 121

Query: 887  GYFSSIIDILKSICKSCARILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKPT-- 714
            GY S+I+DILK ICK C+R+LL EKL +DYLKKMR+ KME+L+K+ L K IVKKC     
Sbjct: 122  GYLSTILDILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMAS 181

Query: 713  ----CHRCGYVNGGVKKAGSMLGIIHDRSKIVDGTWEECKSAISHIKESKASFHVV-HLL 549
                C RCGY+NG VKKA ++LGIIHDRSK+ +   +E  SAI+H KESKA+ +V  ++L
Sbjct: 182  KAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTESL-QEFASAITHTKESKAAVNVATYIL 240

Query: 548  NPVRVLSLFRRMLDEDCELLYLWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSR 369
            NPV VL LF+RM D DCE+LYL +RPEKLIIT+IAVPPI+IRPSV MD  +SNE+DIT R
Sbjct: 241  NPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITER 300

Query: 368  LSTIIATNASLRQDLQCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFI 189
            L  II TNASL+Q+L       K LA WE LQ+EVAQYINSDVRGVP SMQ A+PL GF+
Sbjct: 301  LKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFV 360

Query: 188  QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIE 9
            QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPI MA+ILTYPERVS+HNIE
Sbjct: 361  QRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIE 420

Query: 8    KL 3
            KL
Sbjct: 421  KL 422


>ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
            gi|561005141|gb|ESW04135.1| hypothetical protein
            PHAVU_011G070100g [Phaseolus vulgaris]
          Length = 1392

 Score =  511 bits (1315), Expect = e-142
 Identities = 261/394 (66%), Positives = 308/394 (78%), Gaps = 4/394 (1%)
 Frame = -3

Query: 1172 LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 993
            + FTKEP++ED GPRKIK++KFSM S +EI K  EVQVW+G +YDS +KPI  GLLD  M
Sbjct: 9    ITFTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHGGLLDPRM 68

Query: 992  GPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEK 813
            GPANKS  CATCHG+F  CPGH+GYLNL LPVFNVGY  SI++ILK ICK CARILL E 
Sbjct: 69   GPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCICKGCARILLDED 128

Query: 812  LRRDYLKKMRSSKMESLQKSGLAK-QIVKKCKPT--CHRCGYVNGGVKKAGSMLGIIHDR 642
             R+ +LKKMRSSK   L K    K +I+K C     C RCGY+NG VKK  + L I+HD 
Sbjct: 129  TRKKHLKKMRSSKKSELDKMDFVKVRIIKDCSKVVNCPRCGYINGSVKKLPASLIIMHDC 188

Query: 641  SKIVDGTWEECKSAISHIKESKASFHVVH-LLNPVRVLSLFRRMLDEDCELLYLWDRPEK 465
            SK  +   EE +S +S IK+SKA+ +V + +LNP +VLSLFR+MLDEDCELLY+ +RPEK
Sbjct: 189  SKCKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDCELLYVAERPEK 248

Query: 464  LIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSKCLADW 285
            LIIT+I VPPI+IRPSV MD   SNE+DIT RL  II  NA LRQ+LQ ++ +SK L  W
Sbjct: 249  LIITNIVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESSVSSKFLDGW 308

Query: 284  ELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVIS 105
            E+LQ EVAQ+INS+VRG+P  MQ  K L GF+QRLKGK GRFRGNLSGKRVEYTGRTVIS
Sbjct: 309  EILQNEVAQFINSEVRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVIS 368

Query: 104  PDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            PDPNLKI+EVAIPILMA ILTYPERV++HNIEKL
Sbjct: 369  PDPNLKISEVAIPILMASILTYPERVTHHNIEKL 402


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score =  509 bits (1312), Expect = e-142
 Identities = 257/399 (64%), Positives = 316/399 (79%), Gaps = 9/399 (2%)
 Frame = -3

Query: 1172 LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 993
            L FTK+PYIEDVGPRKIKS++F+ FSGAEI K AEVQV++G +YD+TRKPI+ GLLD  M
Sbjct: 9    LVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRM 68

Query: 992  GPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEK 813
            GPANK   CATCH +F  CPGH+GY+NL LPVFNVGYF++I++ILK ICKSC+RILL EK
Sbjct: 69   GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 128

Query: 812  LRRDYLKKMRSSKMESLQKSGLAKQIVKKCKPT--------CHRCGYVNGGVKKAGSMLG 657
            L +D+L+KMR+ K+E+L+K  L K+I+KKC           C RCGY+NG VKKA SMLG
Sbjct: 129  LFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSVKKAVSMLG 188

Query: 656  IIHDRSKIVDGTWEECKSAISHIKESKASFHVVH-LLNPVRVLSLFRRMLDEDCELLYLW 480
            I+H R++  D         +S  ++ +A ++V + +LNP RVL LF+RM DEDCELL+L 
Sbjct: 189  ILHYRARSKDA------GVVS--EDLRAPYNVSNDILNPFRVLCLFQRMSDEDCELLFLS 240

Query: 479  DRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSK 300
            +RPEKLIIT++ VPPI+IRPSV MD  +SNE+DIT RL  II  NAS+ Q+L  +   +K
Sbjct: 241  NRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQAK 300

Query: 299  CLADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTG 120
            CL  W++LQ EVAQ INSDVRG+P SMQ +KPL GF+QRLKGKQGRFRGNL GKRVE+TG
Sbjct: 301  CLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360

Query: 119  RTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            RTVISPDPNLKITEVA+PI MA+ILTYPERV+ HNIEKL
Sbjct: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKL 399


>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
            max]
          Length = 1391

 Score =  506 bits (1302), Expect = e-140
 Identities = 257/394 (65%), Positives = 309/394 (78%), Gaps = 4/394 (1%)
 Frame = -3

Query: 1172 LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 993
            + FTKEP++ED GPRKIK++KFS  S +EI K AEVQVW+G +YDS +KPI  GLLD  M
Sbjct: 9    ITFTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHGGLLDPRM 68

Query: 992  GPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEK 813
            GPANKS +CATC G+F  CPGH+GYLNL LPVFNVGY S+I++ILK ICK CARILL E 
Sbjct: 69   GPANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGCARILLDED 128

Query: 812  LRRDYLKKMRSSKMESLQKSGLAK-QIVKKCKPT--CHRCGYVNGGVKKAGSMLGIIHDR 642
             R+ +LKKMRSSK   L K    K +++K C     C RCGY+NG VKK  + L IIHD 
Sbjct: 129  TRKKHLKKMRSSKKSELDKIDFVKVRVIKDCSKVVNCPRCGYINGSVKKLPASLTIIHDC 188

Query: 641  SKIVDGTWEECKSAISHIKESKASFHVVH-LLNPVRVLSLFRRMLDEDCELLYLWDRPEK 465
            SK  +   EE  SA+S +K+S+A+ +V + +LNP +VLSLF+RMLDEDCELLY+ +RPEK
Sbjct: 189  SKCRNYIVEELDSALSRMKDSRATTNVSNRILNPFQVLSLFKRMLDEDCELLYVAERPEK 248

Query: 464  LIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSKCLADW 285
            LI+T++ VPPI+IRPSV MD   SNE+DIT RL  II  NA LRQ+LQ +  +SK L  W
Sbjct: 249  LIMTNVVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESTFSSKFLDGW 308

Query: 284  ELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGRTVIS 105
            ++LQ EVAQ+INSDVRG+P  MQP K L GF+QRLKGK GRFRGNLSGKRVEYTGRTVIS
Sbjct: 309  DILQNEVAQFINSDVRGIPFYMQPTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVIS 368

Query: 104  PDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            PDPNLKI+EVAIPI MA+ILTYPERV++HNIEKL
Sbjct: 369  PDPNLKISEVAIPIHMARILTYPERVTHHNIEKL 402


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score =  503 bits (1294), Expect = e-139
 Identities = 259/397 (65%), Positives = 310/397 (78%), Gaps = 9/397 (2%)
 Frame = -3

Query: 1166 FTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHMGP 987
            +TK+PYIEDVGPR+IKSI+FS  SG++I KA+E QV  G +YD+ +K I  GLLD+ MG 
Sbjct: 10   YTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVGGLLDTRMGA 69

Query: 986  ANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEKLR 807
             NK G C TC GSF  CPGHFGYLNLVLPV+NVGY S+I+DILK ICKSC+R+L+ EKLR
Sbjct: 70   PNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCSRVLVDEKLR 129

Query: 806  RDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSMLGIIH 648
            + YLK+MR+ + E L+K+ L K+IVKKC          C RCGY+NG VKKAGS++GIIH
Sbjct: 130  KSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKKAGSVVGIIH 189

Query: 647  DRSKIVDGTWEECKSAISHIKESKASFHV-VHLLNPVRVLSLFRRMLDEDCELLYLWDRP 471
            DRSK++DG  EECKSAI H +E++A   +  ++LNPVRVLSLF+RM++EDCELLYL  RP
Sbjct: 190  DRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEEDCELLYLQGRP 249

Query: 470  EKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTS-KCL 294
            EKLIIT IAVPPISIRPSVF +  +SNE+DIT RL  II  NA LR +L     T  K L
Sbjct: 250  EKLIITTIAVPPISIRPSVFTEGSQSNENDITERLKQIIQFNAKLRLELLEGRRTGIKYL 309

Query: 293  ADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTGRT 114
              W+ LQ  V  YINSDVR +P  MQ  +PL GF+QRL GKQGRFR NL+GKRVE+TGRT
Sbjct: 310  IGWDELQAVVTLYINSDVR-IPLDMQVGRPLSGFVQRLTGKQGRFRQNLAGKRVEFTGRT 368

Query: 113  VISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            VISPDPNLKITEVAIPI MA+ILTYPERV++HNIEKL
Sbjct: 369  VISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKL 405


>ref|XP_007208145.1| hypothetical protein PRUPE_ppa024521mg, partial [Prunus persica]
            gi|462403787|gb|EMJ09344.1| hypothetical protein
            PRUPE_ppa024521mg, partial [Prunus persica]
          Length = 867

 Score =  498 bits (1283), Expect = e-138
 Identities = 256/400 (64%), Positives = 308/400 (77%), Gaps = 10/400 (2%)
 Frame = -3

Query: 1172 LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 993
            L FTK+P+IED G RKI+  +FS  S  EI   AE Q+++  +YD  +KPIE GLLD  +
Sbjct: 12   LIFTKQPFIEDEGHRKIEKWQFSAMSDTEIVNMAETQIYKCNYYDPNQKPIEGGLLDPRL 71

Query: 992  GPANKS-GICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 816
            GPANKS G CATC      CPGHFG+L L LPV NVGY S+++DILK ICK C+ ILL E
Sbjct: 72   GPANKSSGECATCGAVMKDCPGHFGFLVLALPVLNVGYLSTVVDILKCICKLCSGILLEE 131

Query: 815  KLRRDYLKKMRSSKMESLQKSGLAKQIVKKC-------KPT-CHRCGYVNGGVKKAGSML 660
             +R D+LKKMRS KME L+K+ L K+IVKKC       +P  C +CG++NG VKKA  +L
Sbjct: 132  GMRNDFLKKMRSPKMEPLRKTELMKKIVKKCNNLTTNYRPVKCSKCGFINGSVKKAVGVL 191

Query: 659  GIIHDRSKIVDGTWEECKSAISHIKESKASFHVV-HLLNPVRVLSLFRRMLDEDCELLYL 483
            GIIHDRSK+ +G  ++ ++ +SH KESKASF+V  H+LNP R+ SLF+RM+DEDCELL L
Sbjct: 192  GIIHDRSKL-NGVMDDFRTTLSHTKESKASFNVATHMLNPARIYSLFKRMVDEDCELLNL 250

Query: 482  WDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTS 303
             +RP+ LII +IAVPPI+IRPSV +D   SNE+DIT RL  II +NA LR+DL       
Sbjct: 251  SNRPQNLIIKNIAVPPIAIRPSVIVDRSLSNENDITERLKRIIQSNAILRRDLLEAKSAP 310

Query: 302  KCLADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYT 123
            KCLA W++LQ+EVAQYINSD+RGVP SMQ AKPL GF+QRLKGK GRFRGNLSGKRVEYT
Sbjct: 311  KCLASWDILQVEVAQYINSDIRGVPFSMQTAKPLSGFVQRLKGKGGRFRGNLSGKRVEYT 370

Query: 122  GRTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            GRTVISPDPNLKITEV +PI MAQILTYPERVS+HNIEKL
Sbjct: 371  GRTVISPDPNLKITEVGVPIKMAQILTYPERVSHHNIEKL 410


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score =  495 bits (1274), Expect = e-137
 Identities = 261/403 (64%), Positives = 309/403 (76%), Gaps = 10/403 (2%)
 Frame = -3

Query: 1181 QDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLD 1002
            Q+ LQ TK+PYIEDVGPRKIKSIKFS+FS +EI K AEV+V+ G +Y+ST+KPI+NGLLD
Sbjct: 5    QESLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKLAEVEVYLGLYYESTKKPIQNGLLD 64

Query: 1001 SHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILL 822
              MGP NKSG C TCHG+F  CPGH+GYL L LPV+NVGY  +++DILK ICK C+ ILL
Sbjct: 65   PRMGPPNKSGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILL 124

Query: 821  PEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK--------PTCHRCGYVNGGVKKAGS 666
             +K RRD LKKMR+ + E L+KS L K++VK+C          TC +CGY+NG VKK   
Sbjct: 125  DDKERRDILKKMRNPRTEFLKKSELHKRVVKRCNAMAGGQKTATCSKCGYMNGMVKKL-- 182

Query: 665  MLGIIHDR-SKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELL 489
             L I H++ ++I+D    E   AIS  +E +AS  V   ++P  V SLF+ M DEDCELL
Sbjct: 183  QLKITHEQGNRILD----EINVAISDKRELRASVSVPPEIDPKVVYSLFKNMSDEDCELL 238

Query: 488  YLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDLQCTA 312
            YL DRPEKL++T I VPPI+IRPSVF+D G +SNE+DIT RL  II  NASL Q++  ++
Sbjct: 239  YLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSS 298

Query: 311  PTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRV 132
            P  K L  W  LQ+EVAQYINSDVRGVP  MQP +PL GF QRLKGKQGRFRGNLSGKRV
Sbjct: 299  PV-KSLNQWIDLQMEVAQYINSDVRGVPLQMQPPRPLSGFTQRLKGKQGRFRGNLSGKRV 357

Query: 131  EYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            EYTGRTVISPDPNLKITEVAIPILMAQILTYPERVS HNIEKL
Sbjct: 358  EYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKL 400


>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X2 [Solanum tuberosum]
          Length = 1243

 Score =  491 bits (1265), Expect = e-136
 Identities = 261/407 (64%), Positives = 311/407 (76%), Gaps = 10/407 (2%)
 Frame = -3

Query: 1193 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 1014
            M  +Q+ LQ TK+PYIEDVGPRKIKSIKFS+FS +EI K+AEV+V+ G +Y+ST+KPI+N
Sbjct: 1    MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60

Query: 1013 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 834
            GLLD  MGP NK+G C TCHG+F  CPGH+GYL L LPV+NVGY  +++DILK ICK C+
Sbjct: 61   GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120

Query: 833  RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK--------PTCHRCGYVNGGVK 678
             ILL +K RRD LKKMR+ + E L+KS L K++VK+C          TC +CGY+NG VK
Sbjct: 121  SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180

Query: 677  KAGSMLGIIHDR-SKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDED 501
            K    L I H++ ++I+D    E   AIS  +E +AS  V   L+P  V SLF+ M DED
Sbjct: 181  KL--QLKITHEQGNRILD----EINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDED 234

Query: 500  CELLYLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDL 324
            CELLYL DRPEKL++T I VPPI+IRPSVF+D G +SNE+DIT RL  II  NASL Q++
Sbjct: 235  CELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEM 294

Query: 323  QCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLS 144
              ++P  K L  W  LQ+EVAQYINSDVRGVP  MQ  +PL GF QRLKGKQGRFRGNLS
Sbjct: 295  SDSSPV-KSLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLS 353

Query: 143  GKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            GKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVS HNIEKL
Sbjct: 354  GKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKL 400


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score =  491 bits (1265), Expect = e-136
 Identities = 261/407 (64%), Positives = 311/407 (76%), Gaps = 10/407 (2%)
 Frame = -3

Query: 1193 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 1014
            M  +Q+ LQ TK+PYIEDVGPRKIKSIKFS+FS +EI K+AEV+V+ G +Y+ST+KPI+N
Sbjct: 1    MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60

Query: 1013 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 834
            GLLD  MGP NK+G C TCHG+F  CPGH+GYL L LPV+NVGY  +++DILK ICK C+
Sbjct: 61   GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120

Query: 833  RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK--------PTCHRCGYVNGGVK 678
             ILL +K RRD LKKMR+ + E L+KS L K++VK+C          TC +CGY+NG VK
Sbjct: 121  SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180

Query: 677  KAGSMLGIIHDR-SKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDED 501
            K    L I H++ ++I+D    E   AIS  +E +AS  V   L+P  V SLF+ M DED
Sbjct: 181  KL--QLKITHEQGNRILD----EINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDED 234

Query: 500  CELLYLWDRPEKLIITDIAVPPISIRPSVFMDAG-RSNEDDITSRLSTIIATNASLRQDL 324
            CELLYL DRPEKL++T I VPPI+IRPSVF+D G +SNE+DIT RL  II  NASL Q++
Sbjct: 235  CELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEM 294

Query: 323  QCTAPTSKCLADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLS 144
              ++P  K L  W  LQ+EVAQYINSDVRGVP  MQ  +PL GF QRLKGKQGRFRGNLS
Sbjct: 295  SDSSPV-KSLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLS 353

Query: 143  GKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            GKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVS HNIEKL
Sbjct: 354  GKRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKL 400


>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
            brachyantha]
          Length = 1389

 Score =  483 bits (1243), Expect = e-134
 Identities = 245/399 (61%), Positives = 302/399 (75%), Gaps = 2/399 (0%)
 Frame = -3

Query: 1193 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 1014
            MA  +++L+ TKEP+IED G R+IKSI+FSMFSG E+R++AEVQVW    Y+   +P+ N
Sbjct: 1    MARPEEKLRCTKEPFIEDAGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNQEMRPVPN 60

Query: 1013 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 834
            GLLD+ MG ANK G C+TCHGSFA CPGHFGYL L LPVFNVG+F+ I+D+LK ICK C+
Sbjct: 61   GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGCS 120

Query: 833  RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAGSMLG 657
            R+LL EK R ++LKKMR+ K + LQKS + K++  KCK   C  CG++NG  KK  + L 
Sbjct: 121  RVLLVEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI 180

Query: 656  IIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLWD 477
            I+HD SK +DG+ EE K A+SH KE K SF  VH+L+P  VLSLF+RM DEDCELL L D
Sbjct: 181  ILHDCSKTLDGSTEELKEALSHKKE-KLSFSAVHMLDPATVLSLFKRMTDEDCELLNLGD 239

Query: 476  RPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTSK 300
            RPEKLI+T+IAVPP+ IRPSVF+  GR SNED IT  L +I  TN+ L+++LQ      K
Sbjct: 240  RPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMK 299

Query: 299  CLADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTG 120
            C   W+ LQ++V +YINSD   +P S       RG +QRLKGK GRFRGNLSGKR EYTG
Sbjct: 300  CFDCWQHLQLQVVEYINSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTG 354

Query: 119  RTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            RTVISPDPNL+ITEVAIPILMA++LTYPERVS +NIEKL
Sbjct: 355  RTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKL 393


>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1392

 Score =  483 bits (1242), Expect = e-133
 Identities = 249/399 (62%), Positives = 302/399 (75%), Gaps = 2/399 (0%)
 Frame = -3

Query: 1193 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 1014
            MA  +++L+ TKEP++EDVG R+IKS++FSMFSG EIR++AE QVW    Y +  KP+ N
Sbjct: 1    MARPEEKLRCTKEPFVEDVGTRRIKSMRFSMFSGKEIRQSAETQVWNNRIYGNDMKPVPN 60

Query: 1013 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 834
            GLLD  MG ANK G CATCHGS+  CPGHFGYL LVLPVFNVG+F++I+D+LKSICK C+
Sbjct: 61   GLLDPRMGAANKFGECATCHGSYHECPGHFGYLKLVLPVFNVGFFNNILDVLKSICKGCS 120

Query: 833  RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAGSMLG 657
            RILL EK +R++LKKMR+ ++E L K+ L K++  KCK   C  CGY+NG  KK    L 
Sbjct: 121  RILLHEKDQREFLKKMRNPRLEPLHKAALMKKVRDKCKLSRCPSCGYINGVAKKGRPGLL 180

Query: 656  IIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLWD 477
            I+HD SK +DG+ EE +SA+SH KE K S   VH L+P  VLSLF+RM DEDCELL L D
Sbjct: 181  IVHDCSKTLDGSTEELRSALSHKKE-KLSISSVHTLDPATVLSLFKRMTDEDCELLNLGD 239

Query: 476  RPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTSK 300
            RPEKLIIT+IAVPP+ IRPSVF+  GR SNED IT  L  I+ TN+ L+  LQ   P  K
Sbjct: 240  RPEKLIITEIAVPPVPIRPSVFVGGGRMSNEDGITCILRNIVNTNSILKGILQNGDPLMK 299

Query: 299  CLADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTG 120
            C   W+LLQ++V +YINSD    PS   P    RG +QRLKGK GRFRGNLSGKR EYTG
Sbjct: 300  CFDCWQLLQLQVVEYINSD---APSLTDPQN--RGLVQRLKGKTGRFRGNLSGKRTEYTG 354

Query: 119  RTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            RTVISPDPNL+ITEVAIP+LMA++LTYPERVS +NIEKL
Sbjct: 355  RTVISPDPNLRITEVAIPVLMARVLTYPERVSYYNIEKL 393


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
            gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
            Japonica Group] gi|38347455|emb|CAD41360.2|
            OSJNBa0076N16.24 [Oryza sativa Japonica Group]
            gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
            Japonica Group] gi|116310339|emb|CAH67354.1|
            OSIGBa0130B08.14 [Oryza sativa Indica Group]
            gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
            Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218195112|gb|EEC77539.1| hypothetical protein
            OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score =  479 bits (1234), Expect = e-133
 Identities = 245/399 (61%), Positives = 302/399 (75%), Gaps = 2/399 (0%)
 Frame = -3

Query: 1193 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 1014
            MA  +++L+ TKEP+IEDVG R+IKSI+FSMFSG E+R++AEVQVW    Y+   KP+ N
Sbjct: 1    MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60

Query: 1013 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 834
            GLLD+ MG ANK G C+TCHGSFA CPGHFGYL L LPVFNVG+F+ I+D+LK ICKSC+
Sbjct: 61   GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120

Query: 833  RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAGSMLG 657
            R+LL EK R ++LKKMR+ K + LQKS + K++  KCK   C  CG++NG  KK  + L 
Sbjct: 121  RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI 180

Query: 656  IIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLWD 477
            I+HD SK +DG+ EE + A+SH KE K S   V +L+P  VLSLF+RM DEDCELL L D
Sbjct: 181  ILHDCSKTLDGSTEELRDALSHKKE-KLSISAVRMLDPAIVLSLFKRMTDEDCELLNLGD 239

Query: 476  RPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTSK 300
            RPEKLI+T+IAVPP+ IRPSVF+  GR SNED IT  L +I  TN+ L+++LQ      K
Sbjct: 240  RPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMK 299

Query: 299  CLADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTG 120
            C   W+ LQ++V +YINSD   +P S       RG +QRLKGK GRFRGNLSGKR EYTG
Sbjct: 300  CFDCWQHLQLQVVEYINSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTG 354

Query: 119  RTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            RTVISPDPNL+ITEVAIPILMA++LTYPERVS +NIEKL
Sbjct: 355  RTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKL 393


>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
          Length = 1321

 Score =  478 bits (1230), Expect = e-132
 Identities = 246/400 (61%), Positives = 303/400 (75%), Gaps = 3/400 (0%)
 Frame = -3

Query: 1193 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 1014
            MA  +++L+ TKEP+IEDVG R+IKSI+FSMFSG E+R++AEVQVW    Y+   KP+ N
Sbjct: 1    MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60

Query: 1013 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 834
            GLLD+ MG ANK G C+TCHGSFA CPGHFGYL L LPVFNVG+F+ I+D+LK ICKSC+
Sbjct: 61   GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120

Query: 833  RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAG-SML 660
            R+LL EK R ++LKKMR+ K + LQKS + K++  KCK   C  CG++NG V K G + L
Sbjct: 121  RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGSVAKKGRAGL 180

Query: 659  GIIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLW 480
             I+HD SK +DG+ EE + A+SH KE K S   V +L+P  VLSLF+RM DEDCELL L 
Sbjct: 181  IILHDCSKTLDGSTEELRDALSHKKE-KLSISAVRMLDPAIVLSLFKRMTDEDCELLNLG 239

Query: 479  DRPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTS 303
            DRPEKLI+T+IAVPP+ IRPSVF+  GR SNED IT  L +I  TN+ L+++LQ      
Sbjct: 240  DRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFM 299

Query: 302  KCLADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYT 123
            KC   W+ LQ++V +YINSD   +P S       RG +QRLKGK GRFRGNLSGKR EYT
Sbjct: 300  KCFDCWQHLQLQVVEYINSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYT 354

Query: 122  GRTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            GRTVISPDPNL+ITEVAIPILMA++LTYPERVS +NIEKL
Sbjct: 355  GRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKL 394


>gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus guttatus]
          Length = 1394

 Score =  476 bits (1226), Expect = e-132
 Identities = 240/399 (60%), Positives = 300/399 (75%), Gaps = 9/399 (2%)
 Frame = -3

Query: 1172 LQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSHM 993
            +QFTK PY+EDVGPR+I+SI+FS FS AE+ KA EV+V +  +YD  RKPI+NGLLD  M
Sbjct: 7    IQFTKRPYVEDVGPRRIESIQFSTFSAAEVLKAGEVEVNKIAYYDENRKPIDNGLLDQRM 66

Query: 992  GPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPEK 813
            GPANKS +C TC G F  CPGH+GYL L LPV+NVG+F +IIDILK ICK+C+R+LL +K
Sbjct: 67   GPANKSILCKTCGGKFVDCPGHYGYLPLALPVYNVGFFLTIIDILKCICKNCSRVLLADK 126

Query: 812  LRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP--------TCHRCGYVNGGVKKAGSMLG 657
              + +LK+MR+ K E+L+K  + K++VKKC           C RCGY+NG VKKA   L 
Sbjct: 127  DHQVFLKQMRNPKCETLKKIEIQKRVVKKCNSLAGSKRAVKCSRCGYINGMVKKAKEPLK 186

Query: 656  IIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLWD 477
            I HDR+K+VD   +E +SA++H K+ K +  V+  ++P     L   MLDEDCELLYL D
Sbjct: 187  IQHDRAKVVDNCLDERRSALAHTKDIKGNPVVISTIDPKTAYHLLENMLDEDCELLYLHD 246

Query: 476  RPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPTSKC 297
            RPEKLI+T+I VPPI+IRPSVF     SNE+DITSRL  II  NA++ Q++   +  S+ 
Sbjct: 247  RPEKLIVTNILVPPIAIRPSVFSTRAMSNENDITSRLKQIIQINAAVLQEMSDQSSQSQS 306

Query: 296  LA-DWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTG 120
            L  +W+ LQ+EVAQYINSDVR      +  KPL GF+QRLKGKQGRFRGNLSGKRVE+TG
Sbjct: 307  LTNNWDSLQVEVAQYINSDVRVPLQYSENTKPLSGFVQRLKGKQGRFRGNLSGKRVEFTG 366

Query: 119  RTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            RTVISPDPNLKI EVA+PILMAQIL+YPERVS+HNIE+L
Sbjct: 367  RTVISPDPNLKINEVAVPILMAQILSYPERVSHHNIERL 405


>tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
          Length = 1030

 Score =  470 bits (1210), Expect = e-130
 Identities = 240/399 (60%), Positives = 298/399 (74%), Gaps = 2/399 (0%)
 Frame = -3

Query: 1193 MAIVQDQLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIEN 1014
            MA  +++L+ TKEP+IEDVG R+IKSI+FS+ SG+EIRK+AEVQVW    YD    P+ N
Sbjct: 1    MAKPEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYDRDMTPVPN 60

Query: 1013 GLLDSHMGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCA 834
            GLLD  MG   K G C TCHG F+ CPGHFGYL L LPVFNVG+F+ I+D+LK ICKSC+
Sbjct: 61   GLLDPRMGIPTKRGKCNTCHGEFSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120

Query: 833  RILLPEKLRRDYLKKMRSSKMESLQKSGLAKQIVKKCK-PTCHRCGYVNGGVKKAGSMLG 657
            R+LL EK RR++LKKMR+ + ++LQKS   K++  KCK   C RC Y NG VKK  + L 
Sbjct: 121  RVLLIEKDRREFLKKMRNPRADALQKSATMKKVRDKCKLSCCPRCDYRNGVVKKGRAGLI 180

Query: 656  IIHDRSKIVDGTWEECKSAISHIKESKASFHVVHLLNPVRVLSLFRRMLDEDCELLYLWD 477
            ++HD SK++DG  EE K+A+ + KE K S   V +L+P  VLSLFRRM+DEDCELL L D
Sbjct: 181  VVHDCSKVLDGHTEELKNALQNKKE-KVSASSVLVLDPATVLSLFRRMIDEDCELLNLGD 239

Query: 476  RPEKLIITDIAVPPISIRPSVFMDAGR-SNEDDITSRLSTIIATNASLRQDLQCTAPTSK 300
            RPEKLI+T+IAVPP+ IRPSV +   R SNED IT  L +I+ TN+ L++ L    P +K
Sbjct: 240  RPEKLIVTEIAVPPVPIRPSVVVGNSRTSNEDSITVILKSIVNTNSILKETLHTGGPFTK 299

Query: 299  CLADWELLQIEVAQYINSDVRGVPSSMQPAKPLRGFIQRLKGKQGRFRGNLSGKRVEYTG 120
            C   W+ LQ++V +Y+NSD   +P S       RG +QRLKGK GRFRGNLSGKR EYTG
Sbjct: 300  CFDCWQYLQLQVVEYVNSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTG 354

Query: 119  RTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            RTVISPDPNLKITEVAIP+LMA++LTYPERVSN+NIEKL
Sbjct: 355  RTVISPDPNLKITEVAIPVLMARVLTYPERVSNYNIEKL 393


>ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
            lyrata] gi|297310500|gb|EFH40924.1| hypothetical protein
            ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata]
          Length = 1376

 Score =  470 bits (1210), Expect = e-130
 Identities = 244/402 (60%), Positives = 298/402 (74%), Gaps = 11/402 (2%)
 Frame = -3

Query: 1175 QLQFTKEPYIEDVGPRKIKSIKFSMFSGAEIRKAAEVQVWRGGFYDSTRKPIENGLLDSH 996
            +++FTK+PYIEDVGP KIKSI FS+ S  E+ KAAEVQVW+  +Y++  KP ENGLLD+ 
Sbjct: 6    EIEFTKQPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWKNNYYETNLKPYENGLLDAR 65

Query: 995  MGPANKSGICATCHGSFAACPGHFGYLNLVLPVFNVGYFSSIIDILKSICKSCARILLPE 816
            MGP NK  IC TC G+F  CPGH+GYL L LPV+NVG+F+ I+DILK ICK C+ +LL E
Sbjct: 66   MGPPNKKSICTTCDGNFQNCPGHYGYLKLDLPVYNVGFFNFILDILKCICKRCSNMLLDE 125

Query: 815  KLRRDYLKKMRSSKMESLQKSGLAKQIVKKCKP-------TCHRCGYVNGGVKKAGSM-- 663
            KL  D+L+KMR+ KME L+K+ LAK +VKKC         TC +CGY+NG VKK  +   
Sbjct: 126  KLYEDHLRKMRNPKMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQMG 185

Query: 662  LGIIHDRSKIVDGTWEECKSAISHIKESKASFH-VVHLLNPVRVLSLFRRMLDEDCELLY 486
            +GI HDRSKI  G  +ECKSAISH KES  + + + ++L+P  VL LF+ M D+DCELLY
Sbjct: 186  IGISHDRSKIHGGEVDECKSAISHTKESTRAINPLTYVLDPNLVLGLFKGMSDKDCELLY 245

Query: 485  LWDRPEKLIITDIAVPPISIRPSVFMDAGRSNEDDITSRLSTIIATNASLRQDLQCTAPT 306
            +  RPE LI T + VPP+SIRPSV +   RSNE+DIT RL  II  NA L + L     +
Sbjct: 246  IAHRPENLITTCMLVPPLSIRPSVMIGGTRSNENDITERLKLIIQNNACLHRILSQPTTS 305

Query: 305  SKCLADWELLQIEVAQYINSDVRGVPSSMQPAK-PLRGFIQRLKGKQGRFRGNLSGKRVE 129
             K +  W+ +Q EVA+YINS+VRGV +  QP K PL G +QRLKGKQGRFR NLSGKRVE
Sbjct: 306  PKNMQVWDTVQSEVAKYINSEVRGVQN--QPEKTPLSGLLQRLKGKQGRFRANLSGKRVE 363

Query: 128  YTGRTVISPDPNLKITEVAIPILMAQILTYPERVSNHNIEKL 3
            YTGRTVISPDPNLKITEV IPILMA+ILT+PE VS HNIEKL
Sbjct: 364  YTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKL 405