BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00014369
         (1288 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007205588.1| hypothetical protein PRUPE_ppa008866mg [Prun...   451   e-124
ref|XP_007031140.1| Pseudouridine synthase family protein isofor...   430   e-118
ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [...   429   e-117
ref|XP_006433526.1| hypothetical protein CICLE_v10001637mg [Citr...   429   e-117
ref|XP_007031141.1| Pseudouridine synthase family protein isofor...   427   e-117
ref|XP_004304865.1| PREDICTED: RNA pseudourine synthase 1-like [...   427   e-117
ref|XP_006472187.1| PREDICTED: RNA pseudouridine synthase 1-like...   425   e-116
gb|EXC51319.1| RNA pseudourine synthase 1 [Morus notabilis]           412   e-112
gb|EXB98832.1| RNA pseudourine synthase 1 [Morus notabilis]           411   e-112
ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [...   409   e-111
ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   409   e-111
ref|XP_002278016.2| PREDICTED: RNA pseudourine synthase 1-like [...   409   e-111
ref|XP_004495663.1| PREDICTED: RNA pseudourine synthase 1-like [...   407   e-111
ref|XP_006344754.1| PREDICTED: RNA pseudouridine synthase 1-like...   403   e-109
ref|XP_004230301.1| PREDICTED: RNA pseudourine synthase 1-like [...   401   e-109
ref|XP_003591214.1| Lon protease-like protein [Medicago truncatu...   396   e-108
gb|EYU37245.1| hypothetical protein MIMGU_mgv1a010081mg [Mimulus...   389   e-105
ref|XP_003555184.1| PREDICTED: RNA pseudouridine synthase 1-like...   386   e-104
ref|XP_006855276.1| hypothetical protein AMTR_s00057p00025150 [A...   385   e-104
ref|XP_007144996.1| hypothetical protein PHAVU_007G200900g [Phas...   383   e-104

>ref|XP_007205588.1| hypothetical protein PRUPE_ppa008866mg [Prunus persica]
            gi|462401230|gb|EMJ06787.1| hypothetical protein
            PRUPE_ppa008866mg [Prunus persica]
          Length = 316

 Score =  451 bits (1159), Expect = e-124
 Identities = 225/312 (72%), Positives = 255/312 (81%), Gaps = 2/312 (0%)
 Frame = +3

Query: 129  FDSAKRDNLNDPKTL-NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIVFEDE 305
            FD+    + N  +T  NYP PLSPPLP ISK IEL RA SAS KS+LFSLS  D+VFED+
Sbjct: 5    FDAINPSSQNALQTSQNYPVPLSPPLPPISKHIELARAMSASSKSSLFSLSRDDVVFEDQ 64

Query: 306  WLIVVNKPGGVYCESVLSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHK 485
            WLIVVNKP GVYCESVL S+P  L DS       + LELH+ANRLDRDTSGLMVITKSHK
Sbjct: 65   WLIVVNKPQGVYCESVLESVPQLLCDSAESGTPANQLELHLANRLDRDTSGLMVITKSHK 124

Query: 486  IAGKLVKAFTDHKVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPG 665
            +A KLVKAFTDHK++KTYIA CIG APKWE I++KSGHGRSKFG WRVY+ASDVGR LPG
Sbjct: 125  VASKLVKAFTDHKISKTYIARCIGSAPKWERITLKSGHGRSKFGAWRVYAASDVGRTLPG 184

Query: 666  GSVVRDMATKFEVLSISGQGSFKEPTKSRPNGEEFLVVEDPSV-KGDDENDEILVRAYPQ 842
            GS+VRDM T FEVLSI+GQGS KEP++ + +    +VV++ +V   D + DEILVRA P+
Sbjct: 185  GSMVRDMETSFEVLSINGQGSLKEPSEFKKDEANTIVVQEKAVIDKDTKKDEILVRARPR 244

Query: 843  SGRTHQIRLHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQA 1022
            SGRTHQIRLHCQYLGISIRGDVKYEGVYEW+GRTYDGH LHAESLSF+HPITGL V FQA
Sbjct: 245  SGRTHQIRLHCQYLGISIRGDVKYEGVYEWKGRTYDGHELHAESLSFEHPITGLPVMFQA 304

Query: 1023 PLPQWASQAFQP 1058
            P+P WASQA QP
Sbjct: 305  PVPSWASQALQP 316


>ref|XP_007031140.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
            gi|508719745|gb|EOY11642.1| Pseudouridine synthase family
            protein isoform 1 [Theobroma cacao]
          Length = 345

 Score =  430 bits (1105), Expect = e-118
 Identities = 219/347 (63%), Positives = 258/347 (74%), Gaps = 6/347 (1%)
 Frame = +3

Query: 45   PTIFSKSSTTIRFLCNSTCLPIMADKTHFDSAKRDNLNDPKTLNYPKPLSPPLPAISKQI 224
            P + SK   T+ FLC                  + + N     NYP PLSPPLP+ISK I
Sbjct: 16   PKLLSKFPKTLLFLC-----------------PKMSTNPNSHQNYPTPLSPPLPSISKDI 58

Query: 225  ELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPGGVYCESVLSSIPLFLTDS-----M 389
            EL RA +AS KS+LF LS +DI++EDEWLI VNKP G+YC+SVL+SIP FL+DS     +
Sbjct: 59   ELARAMTASSKSSLFELSRSDILYEDEWLIAVNKPQGIYCDSVLASIPRFLSDSTVSDRL 118

Query: 390  RPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTKTYIALCIGQAPK 569
                Q  P ELH+ANRLDRDTSG+MVITKSHK+A  LVKAFT+H V KTY+A CIG APK
Sbjct: 119  SDGNQASPFELHLANRLDRDTSGIMVITKSHKVAAALVKAFTNHMVHKTYVAFCIGSAPK 178

Query: 570  WETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSISGQGSFKEPTKS 749
             E I+IKSGHGRSKFG WRVY+A DVGRKLPGGS+VRDM T FEVLSI+GQ S+KEP++S
Sbjct: 179  SERITIKSGHGRSKFGAWRVYAAGDVGRKLPGGSIVRDMGTTFEVLSINGQQSYKEPSES 238

Query: 750  RPNGEEFLVVEDPSV-KGDDENDEILVRAYPQSGRTHQIRLHCQYLGISIRGDVKYEGVY 926
              + E  ++VE+ +V   D + DEILVRA+P+SGRTHQIRLHCQYLGI IRGDVKYEGVY
Sbjct: 239  VKDEETSVIVEEKAVIDVDAQKDEILVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYEGVY 298

Query: 927  EWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQPASN 1067
            EW+GR YD H LHAESLSF HP+TG  V  QAPLP WASQA QP ++
Sbjct: 299  EWKGRRYDAHELHAESLSFQHPVTGFPVMIQAPLPLWASQALQPLTD 345


>ref|XP_002512503.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223548464|gb|EEF49955.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 321

 Score =  429 bits (1104), Expect = e-117
 Identities = 215/308 (69%), Positives = 251/308 (81%), Gaps = 7/308 (2%)
 Frame = +3

Query: 156  NDPKTL-NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPG 332
            NDP TL NYP PLSPPLP+ISKQIEL RA SAS +S+LF+LS +D+++ED+WLI VNKP 
Sbjct: 14   NDPLTLQNYPTPLSPPLPSISKQIELARALSASSRSSLFTLSRSDVLYEDQWLIAVNKPQ 73

Query: 333  GVYCESVLSSIPLFLTDSMR-----PRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGK 497
            GVYCE+VL S+P  L  S          + +P E H+ANRLDRDTSG+MVITKSHK+A K
Sbjct: 74   GVYCETVLESVPRVLAASAELTDPSEGAEGNPHEFHLANRLDRDTSGVMVITKSHKVASK 133

Query: 498  LVKAFTDHKVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVV 677
            LVKAFTDHK+ KTYIALCIG APKWE I+IKSGHGRSKFGVWRVY+ASDVG+ LPGGS V
Sbjct: 134  LVKAFTDHKIKKTYIALCIGLAPKWEKITIKSGHGRSKFGVWRVYAASDVGQTLPGGSTV 193

Query: 678  RDMATKFEVLSISGQGSFKEPTKSRPNGEEFLVVEDPSVKGDD-ENDEILVRAYPQSGRT 854
            +DM T FE+LS++GQGSFKE ++   + E  LVVE+ + K  D +  EILVRA+PQSGRT
Sbjct: 194  KDMETSFELLSVNGQGSFKELSEFEKD-ENILVVEEKAAKNADVKKVEILVRAFPQSGRT 252

Query: 855  HQIRLHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQ 1034
            HQIRLHCQYLGISIRGDVKYEGVYEW GRTYDGH LHAE+LSF+HP+TG+ V  +APLP 
Sbjct: 253  HQIRLHCQYLGISIRGDVKYEGVYEWEGRTYDGHELHAETLSFEHPVTGVPVMLRAPLPS 312

Query: 1035 WASQAFQP 1058
            WA QA QP
Sbjct: 313  WAIQASQP 320


>ref|XP_006433526.1| hypothetical protein CICLE_v10001637mg [Citrus clementina]
            gi|567881937|ref|XP_006433527.1| hypothetical protein
            CICLE_v10001637mg [Citrus clementina]
            gi|557535648|gb|ESR46766.1| hypothetical protein
            CICLE_v10001637mg [Citrus clementina]
            gi|557535649|gb|ESR46767.1| hypothetical protein
            CICLE_v10001637mg [Citrus clementina]
          Length = 357

 Score =  429 bits (1103), Expect = e-117
 Identities = 218/331 (65%), Positives = 256/331 (77%), Gaps = 16/331 (4%)
 Frame = +3

Query: 120  KTHFDSAKRDNLNDPKT-------LNYPKPLSPPLPAISKQIELNRANSASLKSNLFSLS 278
            KT F  A   N  +P          NYP PLSPPLPAISK IEL RA SAS KS+L+ LS
Sbjct: 26   KTFFSLASMLNPTEPTCENAPQIQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLS 85

Query: 279  ETDIVFEDEWLIVVNKPGGVYCESVLSSIPLFLT-DSMRPRF-------QTDPLELHMAN 434
             +D+++EDEW + VNKP GVYCESVL+S+P FL  DS   +        + + LELH+AN
Sbjct: 86   RSDVLYEDEWFVAVNKPQGVYCESVLASVPCFLAGDSAESKSGRLSEGTKLNLLELHLAN 145

Query: 435  RLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTKTYIALCIGQAPKWETISIKSGHGRSKF 614
            RLDRDTSG+MVITKSHK+A KLVKAFTDHKV+KTYIALCIG APKW+ I+I SGHGRSKF
Sbjct: 146  RLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKF 205

Query: 615  GVWRVYSASDVGRKLPGGSVVRDMATKFEVLSISGQGSFKEPTKSRPNGEEFLVVEDPSV 794
            G WRVY+ASDVGR LPGGSVVRDM T FEVLS++G+GSFKEP++ + + E  +VVE  +V
Sbjct: 206  GAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKAV 265

Query: 795  -KGDDENDEILVRAYPQSGRTHQIRLHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHAE 971
               D + +EILVRA+P+SGRTHQIRLHCQYLGISIRGDVKYEGVYEW G+ YDGH LHAE
Sbjct: 266  LDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAE 325

Query: 972  SLSFDHPITGLQVEFQAPLPQWASQAFQPAS 1064
            SLSFDHP+TG  V  QAPLP W ++A Q +S
Sbjct: 326  SLSFDHPVTGCPVMVQAPLPLWGTEALQSSS 356


>ref|XP_007031141.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
            gi|508719746|gb|EOY11643.1| Pseudouridine synthase family
            protein isoform 2 [Theobroma cacao]
          Length = 313

 Score =  427 bits (1099), Expect = e-117
 Identities = 211/304 (69%), Positives = 246/304 (80%), Gaps = 6/304 (1%)
 Frame = +3

Query: 174  NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPGGVYCESV 353
            NYP PLSPPLP+ISK IEL RA +AS KS+LF LS +DI++EDEWLI VNKP G+YC+SV
Sbjct: 10   NYPTPLSPPLPSISKDIELARAMTASSKSSLFELSRSDILYEDEWLIAVNKPQGIYCDSV 69

Query: 354  LSSIPLFLTDS-----MRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTD 518
            L+SIP FL+DS     +    Q  P ELH+ANRLDRDTSG+MVITKSHK+A  LVKAFT+
Sbjct: 70   LASIPRFLSDSTVSDRLSDGNQASPFELHLANRLDRDTSGIMVITKSHKVAAALVKAFTN 129

Query: 519  HKVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKF 698
            H V KTY+A CIG APK E I+IKSGHGRSKFG WRVY+A DVGRKLPGGS+VRDM T F
Sbjct: 130  HMVHKTYVAFCIGSAPKSERITIKSGHGRSKFGAWRVYAAGDVGRKLPGGSIVRDMGTTF 189

Query: 699  EVLSISGQGSFKEPTKSRPNGEEFLVVEDPSV-KGDDENDEILVRAYPQSGRTHQIRLHC 875
            EVLSI+GQ S+KEP++S  + E  ++VE+ +V   D + DEILVRA+P+SGRTHQIRLHC
Sbjct: 190  EVLSINGQQSYKEPSESVKDEETSVIVEEKAVIDVDAQKDEILVRAFPRSGRTHQIRLHC 249

Query: 876  QYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQ 1055
            QYLGI IRGDVKYEGVYEW+GR YD H LHAESLSF HP+TG  V  QAPLP WASQA Q
Sbjct: 250  QYLGIPIRGDVKYEGVYEWKGRRYDAHELHAESLSFQHPVTGFPVMIQAPLPLWASQALQ 309

Query: 1056 PASN 1067
            P ++
Sbjct: 310  PLTD 313


>ref|XP_004304865.1| PREDICTED: RNA pseudourine synthase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 347

 Score =  427 bits (1097), Expect = e-117
 Identities = 207/296 (69%), Positives = 244/296 (82%), Gaps = 2/296 (0%)
 Frame = +3

Query: 174  NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPGGVYCESV 353
            NYP PLSPPLP ISK +EL RA SAS KS+LF+LS  D+V+ED+WLIVVNKP G+YCE+V
Sbjct: 51   NYPVPLSPPLPLISKNMELARAMSASSKSSLFTLSRNDVVYEDQWLIVVNKPQGIYCETV 110

Query: 354  LSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTK 533
            L S+P  L +S     +    E+H+ANRLDRDTSG+M+ITKSHK+A KLVKAFTDHKV+K
Sbjct: 111  LESVPKLLAES---GLEGKAPEIHLANRLDRDTSGVMIITKSHKVAAKLVKAFTDHKVSK 167

Query: 534  TYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSI 713
            TYIA CIG APKWE I++KSGHGRSKFG WRVY+ASDVGR LPGGSVVRDM T FE+LSI
Sbjct: 168  TYIACCIGSAPKWERITVKSGHGRSKFGAWRVYAASDVGRPLPGGSVVRDMETSFEILSI 227

Query: 714  SGQGSFKEPTKSRPNGEEFLVVEDPSV--KGDDENDEILVRAYPQSGRTHQIRLHCQYLG 887
            +GQG F+EP++ R + ++ LVVE+ +V   GD + DEILV A P+SGRTHQIRLHCQYLG
Sbjct: 228  NGQGCFREPSEFRIDDDKILVVEEKAVIIDGDAKKDEILVIARPRSGRTHQIRLHCQYLG 287

Query: 888  ISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQ 1055
            ISIRGDVKYEGVYEW+G TY GH LHAES+S DHPITGL + F+APLP WA+Q  Q
Sbjct: 288  ISIRGDVKYEGVYEWKGTTYGGHELHAESMSLDHPITGLPILFRAPLPSWANQLIQ 343


>ref|XP_006472187.1| PREDICTED: RNA pseudouridine synthase 1-like [Citrus sinensis]
          Length = 324

 Score =  425 bits (1092), Expect = e-116
 Identities = 215/313 (68%), Positives = 252/313 (80%), Gaps = 10/313 (3%)
 Frame = +3

Query: 156  NDPKTL-NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPG 332
            N P+T  NYP PLSPPLPAISK IEL RA SAS KS+L+ LS +D+++EDEWL+ VNKP 
Sbjct: 11   NAPQTQQNYPTPLSPPLPAISKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQ 70

Query: 333  GVYCESVLSSIPLFLT-DSMRPRF-------QTDPLELHMANRLDRDTSGLMVITKSHKI 488
            GVYCESVL+S+P  L  DS   +        + + LELH+ANRLDRDTSG+MVITKSHK+
Sbjct: 71   GVYCESVLASVPCLLAGDSAESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKV 130

Query: 489  AGKLVKAFTDHKVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGG 668
            A KLVKAFTDHKV+KTYIALCIG APKW+ I+I SGHGRSKFG WRVY+ASDVGR LPGG
Sbjct: 131  ASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGG 190

Query: 669  SVVRDMATKFEVLSISGQGSFKEPTKSRPNGEEFLVVEDPSV-KGDDENDEILVRAYPQS 845
            SVVRDM T FEVLS++G+GSFKEP++ + + E  +VVE  +V   D + +EILVR +P+S
Sbjct: 191  SVVRDMVTSFEVLSVNGEGSFKEPSELQEDEENNIVVEKKAVLDADAKKNEILVRVFPRS 250

Query: 846  GRTHQIRLHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAP 1025
            GRTHQIRLHCQYLGISIRGDVKYEGVYEW G+ YDGH LHAESLS +HPITG  V  QAP
Sbjct: 251  GRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSLEHPITGCPVMVQAP 310

Query: 1026 LPQWASQAFQPAS 1064
            LP WA+QA Q +S
Sbjct: 311  LPLWATQAPQSSS 323


>gb|EXC51319.1| RNA pseudourine synthase 1 [Morus notabilis]
          Length = 319

 Score =  412 bits (1058), Expect = e-112
 Identities = 201/298 (67%), Positives = 236/298 (79%), Gaps = 4/298 (1%)
 Frame = +3

Query: 174  NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPGGVYCESV 353
            NYP PLSPP P +SK +EL+RA SAS KS+LFS+S  D VFEDE L+ VNKP G+YCESV
Sbjct: 21   NYPVPLSPPPPPVSKDVELSRAMSASSKSSLFSISRNDFVFEDECLVAVNKPQGIYCESV 80

Query: 354  LSSIPLFLTDSMRP---RFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHK 524
              S+   L+DS  P     +  P ELH+ANRLDRDTSGLM+ITKSHK+A KLVKAFT HK
Sbjct: 81   FDSVRKVLSDSSEPGQLETEASPPELHLANRLDRDTSGLMLITKSHKVASKLVKAFTTHK 140

Query: 525  VTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEV 704
            V+KTYIA C+G APKWE I+IKSGHGRSKFG WRVY+ASDVGR LPGGSVVRDM T FEV
Sbjct: 141  VSKTYIAFCVGSAPKWENITIKSGHGRSKFGAWRVYAASDVGRTLPGGSVVRDMETSFEV 200

Query: 705  LSISGQGSFKEPTKSRPNGEEFLVVEDPS-VKGDDENDEILVRAYPQSGRTHQIRLHCQY 881
            LS++GQ   KEP++ R +G   L+VE+ + +  D + DEILVRA P+SGR+HQIRLHCQY
Sbjct: 201  LSVNGQRVSKEPSEFRKDGNNVLIVEEKALIDRDGKKDEILVRARPKSGRSHQIRLHCQY 260

Query: 882  LGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQ 1055
            LGIS+RGDVKYEGV +W+G+TY+GH LHAESLSF+HPIT L V    PLP WASQ  Q
Sbjct: 261  LGISLRGDVKYEGVSQWKGKTYNGHELHAESLSFEHPITSLPVVLSTPLPMWASQVTQ 318


>gb|EXB98832.1| RNA pseudourine synthase 1 [Morus notabilis]
          Length = 319

 Score =  411 bits (1057), Expect = e-112
 Identities = 201/298 (67%), Positives = 236/298 (79%), Gaps = 4/298 (1%)
 Frame = +3

Query: 174  NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPGGVYCESV 353
            NYP PLSPP P +SK +EL+RA SAS KS+LFS+S  D VFEDE L+ VNKP G+YCESV
Sbjct: 21   NYPVPLSPPPPPVSKDVELSRAMSASSKSSLFSISRNDFVFEDECLVAVNKPQGIYCESV 80

Query: 354  LSSIPLFLTDSMRP---RFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHK 524
              S+   L+DS  P     +  P ELH+ANRLDRDTSGLM+ITKSHK+A KLVKAFT HK
Sbjct: 81   FDSVRKVLSDSSEPGQLETEASPPELHLANRLDRDTSGLMLITKSHKVASKLVKAFTTHK 140

Query: 525  VTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEV 704
            V+KTYIA C+G APKWE I+IKSGHGRSKFG WRVY+ASDVGR LPGGSVVRDM T FEV
Sbjct: 141  VSKTYIAFCVGSAPKWENITIKSGHGRSKFGAWRVYAASDVGRTLPGGSVVRDMETSFEV 200

Query: 705  LSISGQGSFKEPTKSRPNGEEFLVVEDPS-VKGDDENDEILVRAYPQSGRTHQIRLHCQY 881
            LS++GQ   KEP++ R +G   L+VE+ + +  D + DEILVRA P+SGR+HQIRLHCQY
Sbjct: 201  LSVNGQRVSKEPSEFRKDGNNVLIVEEKALIDRDGKKDEILVRARPKSGRSHQIRLHCQY 260

Query: 882  LGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQ 1055
            LGIS+RGDVKYEGV +W+G+TY+GH LHAESLSF+HPIT L V    PLP WASQ  Q
Sbjct: 261  LGISLRGDVKYEGVSQWKGKTYNGHELHAESLSFEHPITSLLVVLSTPLPMWASQVTQ 318


>ref|XP_004144814.1| PREDICTED: RNA pseudourine synthase 1-like [Cucumis sativus]
          Length = 366

 Score =  409 bits (1052), Expect = e-111
 Identities = 210/348 (60%), Positives = 255/348 (73%), Gaps = 2/348 (0%)
 Frame = +3

Query: 21   LAPHLLLPPTIFSKSSTTIRFLCNSTCLPIMADKTHFDSAKRDNLNDPKTL-NYPKPLSP 197
            L P+  + P  F++   T  F C      +    T  DS++    N P T  NYP PLSP
Sbjct: 7    LHPNFSISPKTFTEFPFTKSF-CFHRFKSVSNSMT--DSSEPVTGNCPSTAENYPVPLSP 63

Query: 198  PLPAISKQIELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPGGVYCESVLSSIPLFL 377
            PLPAISK +EL RA  AS KS+L++LS  D+++EDEWLI VNKP G+YCE+VL+++P  L
Sbjct: 64   PLPAISKNLELARAMVASSKSSLYALSANDVIYEDEWLIAVNKPQGIYCENVLAAVPRLL 123

Query: 378  TDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTKTYIALCIG 557
             DS     +T   ELH+ANRLDRDTSG+MVITKSHK+A KLVKAFTDH V+K+YIA C+G
Sbjct: 124  GDSANAGIKTSLPELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHTVSKSYIAFCVG 183

Query: 558  QAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSISGQGSFKE 737
             +PKW+ I++KSGHGRSKFGVWRVY+A+DVGR LPGGSVVRDM T FEVLS++G+ + +E
Sbjct: 184  TSPKWKKINVKSGHGRSKFGVWRVYAAADVGRSLPGGSVVRDMETYFEVLSVNGKNTMEE 243

Query: 738  PTKSRPNGEEFLVVEDPS-VKGDDENDEILVRAYPQSGRTHQIRLHCQYLGISIRGDVKY 914
              K R   EE +VV   S V  D   DEIL+RA P+SGRTHQIRLHCQYLGI IRGDVKY
Sbjct: 244  LQKFRRGEEETIVVHTKSLVDIDSHKDEILIRARPRSGRTHQIRLHCQYLGIPIRGDVKY 303

Query: 915  EGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQP 1058
            EGV EW  + YD H LHAESL F HP+TG+ ++ QAPLP WASQA QP
Sbjct: 304  EGVTEWNEKIYDSHELHAESLYFVHPVTGIPLKLQAPLPSWASQALQP 351


>ref|XP_004158751.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 1-like
            [Cucumis sativus]
          Length = 366

 Score =  409 bits (1050), Expect = e-111
 Identities = 210/348 (60%), Positives = 254/348 (72%), Gaps = 2/348 (0%)
 Frame = +3

Query: 21   LAPHLLLPPTIFSKSSTTIRFLCNSTCLPIMADKTHFDSAKRDNLNDPKTL-NYPKPLSP 197
            L P+  + P  F++   T  F C      +    T  DS++    N P T  NYP PLSP
Sbjct: 7    LHPNFSISPKTFTEFPFTKSF-CFHRFKSVSNSMT--DSSEPVTGNCPSTAENYPVPLSP 63

Query: 198  PLPAISKQIELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPGGVYCESVLSSIPLFL 377
            PLPAISK +EL RA  AS KS+L++LS  D+++EDEWLI VNKP G+YCE+VL+++P  L
Sbjct: 64   PLPAISKNLELARAMVASSKSSLYALSANDVIYEDEWLIAVNKPQGIYCENVLAAVPRLL 123

Query: 378  TDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTKTYIALCIG 557
             DS     +T   ELH+ANRLDRDTSG+MVITKSHK+A KLVKAFTDH V+K+YIA C+G
Sbjct: 124  GDSANAGIKTSLPELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHTVSKSYIAFCVG 183

Query: 558  QAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSISGQGSFKE 737
             +PKW  I++KSGHGRSKFGVWRVY+A+DVGR LPGGSVVRDM T FEVLS++G+ + +E
Sbjct: 184  TSPKWXKINVKSGHGRSKFGVWRVYAAADVGRSLPGGSVVRDMETYFEVLSVNGKNTMEE 243

Query: 738  PTKSRPNGEEFLVVEDPS-VKGDDENDEILVRAYPQSGRTHQIRLHCQYLGISIRGDVKY 914
              K R   EE +VV   S V  D   DEIL+RA P+SGRTHQIRLHCQYLGI IRGDVKY
Sbjct: 244  LQKFRRGEEETIVVHTKSLVDIDSHKDEILIRARPRSGRTHQIRLHCQYLGIPIRGDVKY 303

Query: 915  EGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQP 1058
            EGV EW  + YD H LHAESL F HP+TG+ ++ QAPLP WASQA QP
Sbjct: 304  EGVTEWNEKIYDSHELHAESLYFVHPVTGIPLKLQAPLPSWASQALQP 351


>ref|XP_002278016.2| PREDICTED: RNA pseudourine synthase 1-like [Vitis vinifera]
          Length = 348

 Score =  409 bits (1050), Expect = e-111
 Identities = 200/297 (67%), Positives = 238/297 (80%), Gaps = 1/297 (0%)
 Frame = +3

Query: 174  NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPGGVYCESV 353
            NYPKP+SPPLPAISK IE +RA SAS +S+LFSL  +DI+FED+WL+ VNKP GVYCE++
Sbjct: 53   NYPKPISPPLPAISKHIEQSRAMSASSRSSLFSLCRSDILFEDQWLMAVNKPQGVYCETI 112

Query: 354  LSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTK 533
            L S+   L DS           LH+ANRLDRDTSG+MVITKSH++A KL+KAF+D KVTK
Sbjct: 113  LLSVSRMLDDSDG---HDSCRSLHLANRLDRDTSGVMVITKSHQVAAKLMKAFSDRKVTK 169

Query: 534  TYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSI 713
            TY+ALCIG AP WE I+IKSGHGRSKFG WRVY+ASDVGR LP    ++DM T FEVLS+
Sbjct: 170  TYLALCIGAAPTWEKITIKSGHGRSKFGAWRVYAASDVGRALPNAPAIKDMVTSFEVLSV 229

Query: 714  SGQGSFKEPTKSRPNGEEFLVVEDPSV-KGDDENDEILVRAYPQSGRTHQIRLHCQYLGI 890
            +GQG+ KE  +SR   E  LVVE+ SV   +   DEILVRA+P+SGRTHQIRLHCQYLGI
Sbjct: 230  NGQGNVKELPESRKADETVLVVEERSVIDSNARQDEILVRAFPRSGRTHQIRLHCQYLGI 289

Query: 891  SIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQPA 1061
            SIRGDVKYEGV+EW+G+ YDGH LHAESLSF+HP+TG+ V F+APLP WA QA QP+
Sbjct: 290  SIRGDVKYEGVHEWKGKIYDGHELHAESLSFEHPVTGVDVAFRAPLPSWAVQALQPS 346


>ref|XP_004495663.1| PREDICTED: RNA pseudourine synthase 1-like [Cicer arietinum]
          Length = 313

 Score =  407 bits (1046), Expect = e-111
 Identities = 201/300 (67%), Positives = 236/300 (78%), Gaps = 6/300 (2%)
 Frame = +3

Query: 174  NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPGGVYCESV 353
            NYP PLSP LPAISK+IELNRA  AS  S LFSLS+  I++EDEWL+VVNKP G+YC+SV
Sbjct: 22   NYPVPLSPQLPAISKEIELNRAKIASTNSQLFSLSKIHIIYEDEWLLVVNKPNGIYCDSV 81

Query: 354  LSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTK 533
            L+S+            QT P ELH+ANRLDRDTSG+MVITKSHK+A KLVKAFTDHKV K
Sbjct: 82   LTSLQ---------SQQTLPSELHLANRLDRDTSGIMVITKSHKVASKLVKAFTDHKVQK 132

Query: 534  TYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSI 713
            TYIA C G  P WETI+++SGHGRSKFG WRVY+ SD GR LPGGSVVR M T FEVLS+
Sbjct: 133  TYIARCTGSIPNWETITVRSGHGRSKFGAWRVYAFSDSGRVLPGGSVVRSMETSFEVLSV 192

Query: 714  SGQGSFKEPTKSRPNGEEFLVVEDPSVK---GDDEND---EILVRAYPQSGRTHQIRLHC 875
            +G G+F++ ++S   G   LVVE+ SVK   GDDEN+   EI+VRAYP+SGRTHQIRLHC
Sbjct: 193  NGNGNFRDVSESEFEGSSSLVVEEKSVKLDGGDDENENHHEIVVRAYPRSGRTHQIRLHC 252

Query: 876  QYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQ 1055
            QYLGISI GDVKYEGVYEW+G  + GH LHAE+LSFDHP+TG+ +  +APLPQW +Q  Q
Sbjct: 253  QYLGISIIGDVKYEGVYEWKGEIHHGHHLHAETLSFDHPVTGIHLMLRAPLPQWVNQVLQ 312


>ref|XP_006344754.1| PREDICTED: RNA pseudouridine synthase 1-like [Solanum tuberosum]
          Length = 332

 Score =  403 bits (1035), Expect = e-109
 Identities = 210/345 (60%), Positives = 253/345 (73%), Gaps = 5/345 (1%)
 Frame = +3

Query: 27   PHLLLPPTIFSKSSTTI----RFLCNSTCLPIMADKTHFDSAKRDNLNDPKTLNYPKPLS 194
            P   +P   F  SST I    RF+        MA +++FDS          T +YP PLS
Sbjct: 6    PLFQIPLINFFASSTRISRHRRFI-------FMASQSYFDSPSA------ATTDYPVPLS 52

Query: 195  PPLPAISKQIELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPGGVYCESVLSSIPLF 374
            PPLPA+SK IE NRA +AS KS LFSLS + ++FEDEW+I VNKP G+YCESVLSS+P  
Sbjct: 53   PPLPALSKDIEPNRALTASSKSALFSLSRSHVIFEDEWIIAVNKPQGIYCESVLSSLPDL 112

Query: 375  LTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTKTYIALCI 554
            L D+       +  ELH+ANRLDRDTSG+M+ITK HK+A K VKAFTDHKV KTY+A C+
Sbjct: 113  LNDT-----GANVSELHLANRLDRDTSGVMLITKLHKVAAKFVKAFTDHKVRKTYLAYCV 167

Query: 555  GQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSISGQGSFK 734
            G APKWE I++KSGHGRSK+G WRVY+ASD GRKLPGGS+V+DM T FEVLS++G G FK
Sbjct: 168  GLAPKWEKITVKSGHGRSKYGAWRVYAASDAGRKLPGGSLVKDMETSFEVLSVNGLGCFK 227

Query: 735  EPTKSRPNGEEFLVVEDPSVKGDD-ENDEILVRAYPQSGRTHQIRLHCQYLGISIRGDVK 911
            E +    + E+ ++V++ SV G D + DEILVRA P+SGRTHQIRLHCQYLGI IRGDV+
Sbjct: 228  EVSDFHKD-EDVVIVQEKSVIGCDLKKDEILVRASPRSGRTHQIRLHCQYLGIPIRGDVR 286

Query: 912  YEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQ 1046
            YEGVYEW+G  YD H LHAESLSF+HPITG  +  QAPLP WA Q
Sbjct: 287  YEGVYEWKGSRYDSHELHAESLSFEHPITGKPMLLQAPLPSWAIQ 331


>ref|XP_004230301.1| PREDICTED: RNA pseudourine synthase 1-like [Solanum lycopersicum]
          Length = 308

 Score =  401 bits (1030), Expect = e-109
 Identities = 200/313 (63%), Positives = 241/313 (76%), Gaps = 1/313 (0%)
 Frame = +3

Query: 111  MADKTHFDSAKRDNLNDPKTLNYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDI 290
            MA +++FDS          T +YP PLSPPLP +SK IE NRA +AS KS LFSLS + +
Sbjct: 1    MASQSYFDSPS------VATTDYPVPLSPPLPTLSKDIEPNRALTASSKSALFSLSRSHV 54

Query: 291  VFEDEWLIVVNKPGGVYCESVLSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVI 470
            +FEDEW+I VNKP G+YCESVLSS+P  L D+       +  ELH+ANRLDRDTSG+M+I
Sbjct: 55   IFEDEWIIAVNKPQGIYCESVLSSLPDLLNDT-----GANVSELHLANRLDRDTSGVMLI 109

Query: 471  TKSHKIAGKLVKAFTDHKVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVG 650
            TK HK+A K VKAFTDHKV KTY+A C+G APKWE I++KSGHGRSK+G WRVY+ASD G
Sbjct: 110  TKLHKVAAKFVKAFTDHKVRKTYLAYCVGLAPKWEKITVKSGHGRSKYGAWRVYAASDAG 169

Query: 651  RKLPGGSVVRDMATKFEVLSISGQGSFKEPTKSRPNGEEFLVVEDPSVKGDD-ENDEILV 827
            RKLPGGS+V+DM T FEVLS++G G FKE +    + E+ ++V++ SV G D + DEILV
Sbjct: 170  RKLPGGSLVKDMETSFEVLSVNGLGCFKEVSDLHKD-EDIVIVQEKSVIGCDLKKDEILV 228

Query: 828  RAYPQSGRTHQIRLHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQ 1007
            RA P+SGRTHQIRLHCQYLGI IRGDV+YEGVYEW+G  YD H LHAESLSF+HPITG  
Sbjct: 229  RASPRSGRTHQIRLHCQYLGIPIRGDVRYEGVYEWKGNIYDSHELHAESLSFEHPITGKS 288

Query: 1008 VEFQAPLPQWASQ 1046
            +  QAPLP WA Q
Sbjct: 289  MLLQAPLPSWAIQ 301


>ref|XP_003591214.1| Lon protease-like protein [Medicago truncatula]
            gi|355480262|gb|AES61465.1| Lon protease-like protein
            [Medicago truncatula]
          Length = 1262

 Score =  396 bits (1018), Expect = e-108
 Identities = 200/301 (66%), Positives = 238/301 (79%), Gaps = 3/301 (0%)
 Frame = +3

Query: 156  NDPKTL-NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPG 332
            N P  L NYP PLSP LPAISKQIELNRA  A+  S LFSL++T I++EDE+L+ VNKP 
Sbjct: 10   NTPTVLSNYPIPLSPQLPAISKQIELNRATIATSNSELFSLAQTHIIYEDEYLLAVNKPQ 69

Query: 333  GVYCESVLSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAF 512
            G+YC++VL+S+    T            ELH+ANRLDRDTSG+M+ITKSHKIA KLVKAF
Sbjct: 70   GIYCDNVLTSLQSQSTVGS---------ELHLANRLDRDTSGVMLITKSHKIASKLVKAF 120

Query: 513  TDHKVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMAT 692
            TD +V KTYIA C G+ P W+TI++KSGHGRSKFG WRVY  SD GR LPGGSVVR+M T
Sbjct: 121  TDREVKKTYIAFCTGRVPDWKTITVKSGHGRSKFGAWRVYGFSDSGRGLPGGSVVREMET 180

Query: 693  KFEVLSISGQGSFKEPTKSRPNGEEFLVVEDPSVK--GDDENDEILVRAYPQSGRTHQIR 866
             FE LS++G+G F+E T+        +VVE+ +VK  GDDEN EI+VRAYP+SGRTHQIR
Sbjct: 181  SFEFLSVNGKGGFREVTELGFEEGNVVVVEEKAVKMEGDDEN-EIVVRAYPRSGRTHQIR 239

Query: 867  LHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQ 1046
            LHCQYLGISI GDVKYEGVYEW+GR YDGH LHAE+LSFDHP+TG++V F+APLPQWA+Q
Sbjct: 240  LHCQYLGISIIGDVKYEGVYEWKGRVYDGHHLHAETLSFDHPVTGVRVMFRAPLPQWANQ 299

Query: 1047 A 1049
            A
Sbjct: 300  A 300



 Score =  125 bits (313), Expect = 5e-26
 Identities = 97/278 (34%), Positives = 122/278 (43%), Gaps = 3/278 (1%)
 Frame = +3

Query: 258  SNLFSLSETDIVFEDEWLIVVNKPGGVYCESVLSSIPLFLTDSMRPRFQTDPLELHMANR 437
            SN F  SET  +F    LI +        ES++S  PL    S  PR             
Sbjct: 893  SNGFRSSETRQIFHSNILIKL-----AVVESLVSG-PLVFLQSTIPR------------- 933

Query: 438  LDRDTSGLMVITKSHKIAGKLVKAFTDHKVTKTYIALCIGQAPKWETISIKSGHGRSKFG 617
                 + +M+I KSHK+A KLVKAFTDHKV KTYI+LC GQ P WETI+++S +GRSKFG
Sbjct: 934  ----QTYVMLIIKSHKVASKLVKAFTDHKVQKTYISLCTGQTPNWETITVRSCYGRSKFG 989

Query: 618  VWRVY---SASDVGRKLPGGSVVRDMATKFEVLSISGQGSFKEPTKSRPNGEEFLVVEDP 788
              RVY     +++G ++  G VV + A K E +                           
Sbjct: 990  TRRVYVFLEVAELGFEVSDGVVVEEKAVKMEGI--------------------------- 1022

Query: 789  SVKGDDENDEILVRAYPQSGRTHQIRLHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHA 968
                                     + HCQYLGISI GDVKYEG                
Sbjct: 1023 -------------------------QFHCQYLGISIIGDVKYEG---------------- 1041

Query: 969  ESLSFDHPITGLQVEFQAPLPQWASQAFQPASNGERDT 1082
                FDH +TG++V   A LPQW +Q     SN   DT
Sbjct: 1042 ----FDHLVTGVRVMLCASLPQWVNQVL---SNMNIDT 1072



 Score = 59.3 bits (142), Expect = 4e-06
 Identities = 27/34 (79%), Positives = 29/34 (85%)
 Frame = +3

Query: 888 ISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDH 989
           ISI  DVKYEGVYE +GR YDGH LHAE+LSFDH
Sbjct: 796 ISIFRDVKYEGVYECKGRVYDGHHLHAETLSFDH 829


>gb|EYU37245.1| hypothetical protein MIMGU_mgv1a010081mg [Mimulus guttatus]
          Length = 323

 Score =  389 bits (1000), Expect = e-105
 Identities = 196/328 (59%), Positives = 242/328 (73%), Gaps = 5/328 (1%)
 Frame = +3

Query: 111  MADKTHFDSAKRDNLNDPKTL-NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETD 287
            MA ++  +S      N P++L NYP PLSPP P ISK +ELNRA +AS KS+LFSLS  D
Sbjct: 1    MAAESRLNSPNTQPENAPQSLQNYPVPLSPPPPLISKNVELNRALTASSKSSLFSLSRKD 60

Query: 288  IVFEDEWLIVVNKPGGVYCESVLSSIPLFL-TDSMRPRFQTDPLELHMANRLDRDTSGLM 464
            ++FEDEWLI VNKP G+YCE++LSS+ + L TD ++ +      ELH++NRLDRDTSG++
Sbjct: 61   VLFEDEWLIAVNKPNGIYCETILSSVQILLNTDQVKLQ------ELHLSNRLDRDTSGVI 114

Query: 465  VITKSHKIAGKLVKAFTDHKVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASD 644
            +ITKSHK+A KLVKAFT+H V KTY+A C+G  PKW+ + IKSGHGRSK G WRVY+ SD
Sbjct: 115  LITKSHKVAAKLVKAFTNHMVKKTYLASCVGTFPKWKNMIIKSGHGRSKHGAWRVYAYSD 174

Query: 645  VGRKLPGGSVVRDMATKFEVLSISGQGSFKEPTKSRPNGEEFLVVEDPSVKG---DDEND 815
            VGR LPGGS VRDM T F+VLS++G+   +E   +    E+ +  E   V G    DE D
Sbjct: 175  VGRVLPGGSFVRDMETSFDVLSVNGKSCSQESDANHEEEEKIVAEEKSEVVGSCCSDERD 234

Query: 816  EILVRAYPQSGRTHQIRLHCQYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPI 995
            E++VRA+P+SGRTHQIRLHCQYLGI I GDVKYEGVYEW+ RTY+GH LHAE+LSF+HPI
Sbjct: 235  EVVVRAHPRSGRTHQIRLHCQYLGIPIIGDVKYEGVYEWKDRTYEGHELHAETLSFEHPI 294

Query: 996  TGLQVEFQAPLPQWASQAFQPASNGERD 1079
            TG  V  QAPLP WASQA   A     D
Sbjct: 295  TGQSVFIQAPLPLWASQALAQAQLSSLD 322


>ref|XP_003555184.1| PREDICTED: RNA pseudouridine synthase 1-like [Glycine max]
          Length = 320

 Score =  386 bits (991), Expect = e-104
 Identities = 190/301 (63%), Positives = 235/301 (78%), Gaps = 4/301 (1%)
 Frame = +3

Query: 168  TLNYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPGGVYCE 347
            T NYP PLSPPLP ISKQ+EL+RA SA+  S+LFSLS  DI++ D+ LI VNK  G+YCE
Sbjct: 32   TENYPVPLSPPLPPISKQLELSRAMSAASNSSLFSLSPADILYHDDHLIAVNKHPGIYCE 91

Query: 348  SVLSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKV 527
            ++LSS+             +   +LH+ANRLDRDT+G++++TKSHK+A KLVKAFTDHKV
Sbjct: 92   TLLSSLA------------SQSHQLHLANRLDRDTTGVLLLTKSHKVAAKLVKAFTDHKV 139

Query: 528  TKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVL 707
             KTYIALC G  P WE ++++SGHGRSKFG WRVY+ASDVGR LPGGSVVR M T FE+L
Sbjct: 140  KKTYIALCTGPPPNWERVTLRSGHGRSKFGAWRVYAASDVGRALPGGSVVRSMETSFELL 199

Query: 708  SISGQGSFKEPTKS---RPNGEEFLVVEDPSVKGDDEND-EILVRAYPQSGRTHQIRLHC 875
            S++ +G+F+E + S      GE  LVVE+ +VK D  N+ EI+VRAYP+SGRTHQIRLHC
Sbjct: 200  SVNRKGNFREVSDSEFGNVEGENVLVVEEKAVKEDGNNESEIVVRAYPRSGRTHQIRLHC 259

Query: 876  QYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQ 1055
            QYLGISI GDVKYEGVYEW+G T+  H LHAE+LSF+HP+TGL V+ +APLP WA+ AFQ
Sbjct: 260  QYLGISIVGDVKYEGVYEWKGTTHHAHHLHAETLSFEHPVTGLHVKLRAPLPPWATHAFQ 319

Query: 1056 P 1058
            P
Sbjct: 320  P 320


>ref|XP_006855276.1| hypothetical protein AMTR_s00057p00025150 [Amborella trichopoda]
            gi|548859042|gb|ERN16743.1| hypothetical protein
            AMTR_s00057p00025150 [Amborella trichopoda]
          Length = 326

 Score =  385 bits (990), Expect = e-104
 Identities = 189/299 (63%), Positives = 233/299 (77%), Gaps = 3/299 (1%)
 Frame = +3

Query: 162  PKTLNYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPGGVY 341
            P TL++P PL+   P ISKQ+EL+RA +AS KS  FS++++D+++ED+WLI +NKP GVY
Sbjct: 25   PNTLDFPIPLTRHPPPISKQVELDRAMAASAKSG-FSITKSDVIYEDQWLIAINKPSGVY 83

Query: 342  CESVLSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDH 521
            C+ VL+SIP  L  S       +PLELH+ NRLDRDTSG+M+ITK HK+AGKLV+AFT+H
Sbjct: 84   CDHVLASIPRLLGVSPESSGAENPLELHLGNRLDRDTSGVMLITKLHKVAGKLVQAFTEH 143

Query: 522  KVTKTYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFE 701
            +V KTYIALCIG AP+WE I++KSGHGRSKFG WRVYSASD+GR LPGGSVVR+M T F+
Sbjct: 144  RVKKTYIALCIGLAPQWEEIALKSGHGRSKFGAWRVYSASDIGRTLPGGSVVREMVTSFK 203

Query: 702  VLSISGQGSFKEPTKSRPNGEEFLVVEDPSVK---GDDENDEILVRAYPQSGRTHQIRLH 872
            VLS++G  S       + N  E L+V D   K     D  DEIL+RAYPQSGRTHQIRLH
Sbjct: 204  VLSVNGLSSENIDFIEKRN--EMLIVRDEGSKISSTHDAKDEILIRAYPQSGRTHQIRLH 261

Query: 873  CQYLGISIRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQA 1049
            CQYLGI +RGDVKYEG +EW+ +TYD HALHAE+LSFDHP+TG  +EF APLP WA +A
Sbjct: 262  CQYLGIPLRGDVKYEGPHEWKEKTYDYHALHAENLSFDHPVTGSLMEFHAPLPSWAREA 320


>ref|XP_007144996.1| hypothetical protein PHAVU_007G200900g [Phaseolus vulgaris]
            gi|561018186|gb|ESW16990.1| hypothetical protein
            PHAVU_007G200900g [Phaseolus vulgaris]
          Length = 315

 Score =  383 bits (984), Expect = e-104
 Identities = 186/294 (63%), Positives = 230/294 (78%)
 Frame = +3

Query: 174  NYPKPLSPPLPAISKQIELNRANSASLKSNLFSLSETDIVFEDEWLIVVNKPGGVYCESV 353
            NYP PLSPPLPAISKQ+EL+RA +AS  S++FSLS +DI++ D+ LI VNK  G+YCE++
Sbjct: 34   NYPVPLSPPLPAISKQMELSRAMTASSNSSIFSLSPSDILYHDDHLIAVNKHHGIYCETL 93

Query: 354  LSSIPLFLTDSMRPRFQTDPLELHMANRLDRDTSGLMVITKSHKIAGKLVKAFTDHKVTK 533
            LSS+             +   ELH+ANRLDRDTSG++++TK+HK+A KLVKAFT+H+V K
Sbjct: 94   LSSLA------------SQSHELHLANRLDRDTSGILLLTKAHKVAAKLVKAFTEHRVKK 141

Query: 534  TYIALCIGQAPKWETISIKSGHGRSKFGVWRVYSASDVGRKLPGGSVVRDMATKFEVLSI 713
            TYIALC G  P WE ++++SGHGRSKFG WRVY+ASDVGR LPGGS VR M T FEVLS+
Sbjct: 142  TYIALCTGSPPNWERVTVRSGHGRSKFGAWRVYAASDVGRTLPGGSAVRSMETSFEVLSV 201

Query: 714  SGQGSFKEPTKSRPNGEEFLVVEDPSVKGDDENDEILVRAYPQSGRTHQIRLHCQYLGIS 893
            +G GS +E + S   G   LVVE+ +VK D    EI+VRAYP+SGRTHQIRLHCQYLGIS
Sbjct: 202  NGNGSLREVSDSGNEG-NVLVVEEKAVKEDGNESEIVVRAYPRSGRTHQIRLHCQYLGIS 260

Query: 894  IRGDVKYEGVYEWRGRTYDGHALHAESLSFDHPITGLQVEFQAPLPQWASQAFQ 1055
            I GDVKYEGVYEW+G T+  H LHAE+LSF+HP+TG+ V  +APLP WA+QAFQ
Sbjct: 261  IIGDVKYEGVYEWKGTTHHAHHLHAETLSFEHPVTGVDVMLRAPLPLWATQAFQ 314