BLASTX nr result
ID: Akebia24_contig00013365
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia24_contig00013365
(4046 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 1325 0.0
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 1309 0.0
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu... 1306 0.0
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1299 0.0
emb|CBI21038.3| unnamed protein product [Vitis vinifera] 1289 0.0
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 1289 0.0
ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prun... 1283 0.0
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1280 0.0
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca... 1274 0.0
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1264 0.0
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1263 0.0
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu... 1263 0.0
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 1263 0.0
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 1263 0.0
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 1259 0.0
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 1258 0.0
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis] 1255 0.0
ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis tha... 1243 0.0
ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1241 0.0
ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 1241 0.0
>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1200
Score = 1325 bits (3429), Expect = 0.0
Identities = 629/866 (72%), Positives = 736/866 (84%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
V+F+VNAVMHKG+ NQHQLS+ FF+LLR+Q EVN++AL+HIC+YR PVF+A +RLK VQ
Sbjct: 335 VLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQ 394
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
EWLLKNP L KN E+RRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT
Sbjct: 395 EWLLKNPNLFKNPKQLGDVVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 454
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEG+Q++NS+VL YYVAPIVRDITSN FPQKT +FKRV++I++ GFYLCGR+YSFLAF
Sbjct: 455 FMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAF 514
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
S+NQL+D+SAWFF+E+ I+VL++K WMGKF +RNIAKC ARMG CFSSTYATI VP EE
Sbjct: 515 SANQLRDQSAWFFSEERNISVLDVKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEE 574
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
N D+PDIERNGY FSDGIG++TPDLA EVA KL+L +PPCAYQIR+AGCKGV+ACWPG
Sbjct: 575 VNSDLPDIERNGYVFSDGIGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPG 634
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
K DG+RLSLR SMNKF S+HT LEI SWTRFQPGFLNRQI+TLLS L VPD VF KMQ++
Sbjct: 635 KGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQET 694
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
MV +LN+M N DVAFD++T+SCA+QGN AA+MLSAGF+P EPHLRGML +RAAQL D
Sbjct: 695 MVSKLNQMFVNSDVAFDVLTASCADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWD 754
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L K RIFV GRWLMGCLDELG+LE GQCFIQ S SLE CF +HG KFSEA++N QVI
Sbjct: 755 LREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVI 814
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KG VVIAKNPCLHPGD+RVLEAVD PGL HL DCLVFPQKG+RPHTNEASGSDLDGDLYF
Sbjct: 815 KGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYF 874
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTWDENL+PPSK+SW PM YD+ EAK L RPVN QDII+FF KNMVN+ +G ICNAHVVH
Sbjct: 875 VTWDENLIPPSKRSWIPMQYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVH 934
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
ADLSEYGA D+ C+ LAELAATAVDF KTGKVVSMP LKPK+YPDFM KE +Q+YKS K
Sbjct: 935 ADLSEYGATDKNCLTLAELAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEK 994
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
ILGRLYR+IKD D D+ + S+++ P DI YD+ LE+ G++D+I DAW+QKC+YDGQL
Sbjct: 995 ILGRLYRQIKDAYDEDVAASSELNLVPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLN 1054
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
LL QYKV EEE+VTGHIWSMPKY+SRKQG++K+++KHSY++L +EF+ +FE + +
Sbjct: 1055 GLLSQYKVKREEEVVTGHIWSMPKYSSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFE 1114
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDGDGAPAMLSFAWIPAEYLVRIK 3702
+L + EK LYEQKASAWYQV YHP WVKKSLEL+DPDG G MLSFAWI A+YL RIK
Sbjct: 1115 QLEDGEKNKLYEQKASAWYQVVYHPHWVKKSLELQDPDGAGTSVMLSFAWIAADYLARIK 1174
Query: 3703 VRHRRTENLDARKPINSLARYLAQRI 3780
+RHR T N+D+ KP+NSLA+YLA R+
Sbjct: 1175 IRHRETGNVDSAKPVNSLAKYLADRM 1200
Score = 416 bits (1070), Expect = e-113
Identities = 195/316 (61%), Positives = 248/316 (78%), Gaps = 3/316 (0%)
Frame = +3
Query: 240 ENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMNT 419
E K+ V+TQVS GGFD H++AK+L ++L+ IG++WRCRLK SWTPPESYPNF++ +
Sbjct: 4 EGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEITDI 63
Query: 420 ANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQK 599
I+ T+DY +V PHAFVHFA P++AT A+N +G CEL LN L+VSLGP+N F +NQ+
Sbjct: 64 TKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTLNQR 123
Query: 600 RRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSFK 779
RRTT PFK S+V E+G LVSRDEF VGW+GP SGV+F+VDPFD TCK F++ TAFS K
Sbjct: 124 RRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAFSLK 183
Query: 780 GTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVPF 959
T++HAVIKCDFK+EFLVR+I +I QY S L++LLQLAS+P ++YRTADDDI VPF
Sbjct: 184 STSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAWVPF 243
Query: 960 DLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRI---PNDCPR 1130
DLLDD+DPWIRT DFT GAIGRC+SYR+S+ PR G KL K++KYLKE R+ + R
Sbjct: 244 DLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEENHR 303
Query: 1131 PKLTVQDEPDYGMPMS 1178
++ + DEPD+GMPMS
Sbjct: 304 RRIRILDEPDFGMPMS 319
>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 1203
Score = 1309 bits (3388), Expect = 0.0
Identities = 630/872 (72%), Positives = 730/872 (83%), Gaps = 6/872 (0%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
++F+VNAVMHKG+ NQHQLSD FF+LLR+Q +VNIAALRHICSY+HPVFDA KRLK VQ
Sbjct: 332 LMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPLDVNIAALRHICSYKHPVFDAHKRLKAVQ 391
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
+WLLKNPKL ++S D E+RRL ITPT+AYCLPPEVELSNRVLR+YKD+AD+FLRVT
Sbjct: 392 QWLLKNPKLFRSSKQLDDIVEIRRLAITPTRAYCLPPEVELSNRVLRRYKDIADQFLRVT 451
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEG+Q +N++ LTYY APIVRDITSN F QKT +FKRVK+I++ GFYLCGRKYSFLAF
Sbjct: 452 FMDEGLQTMNANTLTYYCAPIVRDITSNSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAF 511
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
SSNQL+DRSAWFFAED K +V I++WMGKF +RNIAKC ARMG CFSSTYAT+ VPS E
Sbjct: 512 SSNQLRDRSAWFFAEDGKTSVSKIRNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSAE 571
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
LD+PDIERN Y FSDGIGM+TPDLA EVA KL+L NPPCAYQIR+AGCKGV+ACWP
Sbjct: 572 AILDLPDIERNNYIFSDGIGMITPDLAKEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPA 631
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
DGIRLSLR SMNKF S+HT LEI SWTRFQPGFLNRQI+TLLS L+VPD +F KMQ
Sbjct: 632 HIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIV 691
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
MV +LN+M + DVAFD++T+SCAEQGNTAA+MLSAGF P++EPHL GML IRAAQL
Sbjct: 692 MVSKLNQMFMDADVAFDVVTASCAEQGNTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWG 751
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L K RIFV GRWLMGCLDELGVLEHGQCFIQ S PSLE+CF +HG +FSE+K+ QV+
Sbjct: 752 LREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSLESCFWKHGSRFSESKKKLQVV 811
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KG VV+AKNPCLHPGDIR+LEAVDAP L HL DCLVFPQKGDRPHTNEASGSDLDGDLYF
Sbjct: 812 KGTVVVAKNPCLHPGDIRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYF 871
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTWDENL+PPSK+SW PM YD+ EAK+L RPVN QDIIDFF KNMVNE +G ICNAHVVH
Sbjct: 872 VTWDENLIPPSKRSWLPMQYDAAEAKQLNRPVNHQDIIDFFAKNMVNENLGAICNAHVVH 931
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
ADLSEYGALDE CI+LAELAATAVDF KTGK+V+MP LKPKLYPDFM KE +Q+Y SNK
Sbjct: 932 ADLSEYGALDENCIKLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNK 991
Query: 3163 ILGRLYRKIK------DGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCA 3324
ILGRLYR++K D D D + S+++ DI YD LE+ GS+D+I DAW+QKC+
Sbjct: 992 ILGRLYRQVKDDYNDDDDDDDDAATSSELNLVRGDIPYDKDLEVSGSSDYILDAWDQKCS 1051
Query: 3325 YDGQLMALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFEN 3504
YDGQL LL QYKV EEE+VTGHIWSMPK NSRKQG++KE++K SYH+L +EF+ +FE
Sbjct: 1052 YDGQLKGLLAQYKVKREEEVVTGHIWSMPKCNSRKQGELKERLKQSYHSLKKEFRQVFEK 1111
Query: 3505 VGQDSLKLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDGDGAPAMLSFAWIPAE 3684
+ D +LTEDEK +LYEQKASAWYQV YHP+WV KS+EL++PD G +MLSFAWI A+
Sbjct: 1112 MDSDFEQLTEDEKNLLYEQKASAWYQVAYHPKWVNKSMELQEPDAAGCASMLSFAWIAAD 1171
Query: 3685 YLVRIKVRHRRTENLDARKPINSLARYLAQRI 3780
YL RIK+R R + +D KP+NSL +YLA RI
Sbjct: 1172 YLARIKIRCRGFDGVDTSKPVNSLVKYLADRI 1203
Score = 453 bits (1166), Expect = e-124
Identities = 211/314 (67%), Positives = 259/314 (82%)
Frame = +3
Query: 237 TENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMN 416
T+ +K+ V+TQVSFGGFDK ++A++L +L+NEIG +WRCRLK SWTPPESYPNF++ +
Sbjct: 3 TKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITD 62
Query: 417 TANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQ 596
TA IQ D Y +VEPHAFVHFASP++AT A N AG CEL N P++VSLGPEN FH+NQ
Sbjct: 63 TAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQ 122
Query: 597 KRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSF 776
+RRTT PFK S+VHVE+GTLVSRDEFLVGW+GP SGV+F+VDPFD CK FT++TAFSF
Sbjct: 123 RRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSF 182
Query: 777 KGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVP 956
KGTT+HAVI+CDFKLEFLVR+I +IKQY S L++LLQLAS+P ++YRTADDDI VP
Sbjct: 183 KGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVP 242
Query: 957 FDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRPK 1136
FDLLDD+DPWIRT DFTP GAIGRCNSYR+S+ PR G KL++++ +L+E R+ DC R
Sbjct: 243 FDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRP 302
Query: 1137 LTVQDEPDYGMPMS 1178
L V EP+Y MPMS
Sbjct: 303 LHVTAEPEYEMPMS 316
>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
protein [Populus trichocarpa]
Length = 1198
Score = 1306 bits (3381), Expect = 0.0
Identities = 629/867 (72%), Positives = 726/867 (83%), Gaps = 1/867 (0%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
V+F+VNAVMHKG+ NQHQLS+ FF+LLR+Q EVN+AAL+HI YR PVFDA K+LK Q
Sbjct: 332 VLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQ 391
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
EWLLKNPK KN D AE+RRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT
Sbjct: 392 EWLLKNPKFFKNQKKLDDIAEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 451
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEG+Q +NS+ L Y+ APIVR ITS FPQKT +FKRV++I++ GFYLCGR+YSFLAF
Sbjct: 452 FMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAF 511
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
SSNQL+DRSAWFFAED I V+ IK WMGKF ++NIAKC ARMG CFSSTYATI VP EE
Sbjct: 512 SSNQLRDRSAWFFAEDRNINVMAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEE 571
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
N D+PDI+RNGY+FSDGIGM+TPDLA EVA KL+ +PPCAYQIR+AGCKGV+ACWP
Sbjct: 572 VNSDLPDIKRNGYDFSDGIGMITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPE 631
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
+ DGIRLSLR SMNKF S+HT+LEI SWTRFQPGFLNRQI+TLLSAL VPD VF KMQ+
Sbjct: 632 QGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQEL 691
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
MV +LN+ML + DVAFD++T+SCAEQGN AA+MLSAGF+PQ EPHLRGML +RAAQL
Sbjct: 692 MVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWG 751
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L KARIFV GRWLMGCLDELGVLE GQCFIQ S LENCF +HG KFSE K+N QV+
Sbjct: 752 LREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSNSYLENCFVKHGSKFSETKKNLQVV 811
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KG VVIAKNPCLHPGDIR+LEAVDAPGL HL DCLVFPQKG+RPH NEASGSDLDGDLYF
Sbjct: 812 KGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHANEASGSDLDGDLYF 871
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTWDENL+PPSK+SW PM YD+ EAK+LTRPVN QDI++FF KNM NE +G ICNAHVV
Sbjct: 872 VTWDENLIPPSKRSWIPMQYDAAEAKQLTRPVNHQDIVEFFAKNMANENLGAICNAHVVR 931
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
ADLSEYGALDEKC+ LAELAATAVDF KTGK+VSMP LKPK+YPDFM KE Q+YKS K
Sbjct: 932 ADLSEYGALDEKCLTLAELAATAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKK 991
Query: 3163 ILGRLYRKIKDG-TDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQL 3339
ILGRLYR+IKD D D+ + S+++ DI YD LE+ G+ DFI DAW++KC+YDGQL
Sbjct: 992 ILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDLDLEVLGATDFISDAWDRKCSYDGQL 1051
Query: 3340 MALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDS 3519
LL QYKV EEE+VTGH+WSMPK +SRKQGD+KE++KHSY+ L REF+ +FE + D
Sbjct: 1052 NGLLAQYKVKREEEVVTGHVWSMPKGSSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDF 1111
Query: 3520 LKLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDGDGAPAMLSFAWIPAEYLVRI 3699
+L +DEK +LYE+KASAWYQVTYHP W++KSLEL+D DG G MLSFAWI A+YL RI
Sbjct: 1112 GQLDDDEKNMLYERKASAWYQVTYHPHWIQKSLELQDSDGAGISVMLSFAWIAADYLARI 1171
Query: 3700 KVRHRRTENLDARKPINSLARYLAQRI 3780
K+RH R N+D+ KP+NSLA+YLA R+
Sbjct: 1172 KIRHSRIGNVDSAKPVNSLAKYLADRM 1198
Score = 429 bits (1103), Expect = e-117
Identities = 198/314 (63%), Positives = 250/314 (79%)
Frame = +3
Query: 237 TENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMN 416
TE K+ V+TQVS GGFD H++AK+L ++LE EIG++WRCRLK SWTPPESYPNF++ +
Sbjct: 3 TEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITD 62
Query: 417 TANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQ 596
I T+DY +VEPHAFVHFA P++AT A++ A CEL LN L+ SLGPEN F +NQ
Sbjct: 63 ITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQ 122
Query: 597 KRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSF 776
+RR T PFK S V VE+GTLVSRDEF VGW+GP +GV+F+VDPFD TC+ F++ TAFSF
Sbjct: 123 RRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSF 182
Query: 777 KGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVP 956
K T +HAVIKCDFK+EFLVR+I +IKQY S L++LLQLAS+P ++YRTADDDI SVP
Sbjct: 183 KSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVP 242
Query: 957 FDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRPK 1136
FDLLDD+DPWIRT DFT GAIGRC+SYR+S+ PR GPKL K++ +LKE R+ + R
Sbjct: 243 FDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRP 302
Query: 1137 LTVQDEPDYGMPMS 1178
+ ++DEPD+GMPM+
Sbjct: 303 IRIRDEPDFGMPMT 316
>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
sinensis]
Length = 1197
Score = 1299 bits (3362), Expect = 0.0
Identities = 630/867 (72%), Positives = 729/867 (84%), Gaps = 1/867 (0%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
++F+VNAVMHKG+INQHQLSD FF+LLR Q REVN+AAL+HI SY+ PVFDACKRLK VQ
Sbjct: 332 IMFLVNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQ 391
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
EWLLK+P+L K D EVRRLVITPTKAYCLPPEVELSNRVLRKYKD+ADRFLRVT
Sbjct: 392 EWLLKDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVT 451
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEG+Q +N++VL+Y++APIVRDIT N F QKT VFKRV++I+S GFYLCGRK+SFLAF
Sbjct: 452 FMDEGLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAF 511
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
SS+QL+D SAWFF+ED K +VL+IK WMG+F D+NIAKC ARMG CFSSTYAT+ VP E
Sbjct: 512 SSSQLRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTE 571
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPP-CAYQIRFAGCKGVIACWP 2079
+ ++PDI+RNGY FSDGIG +TPDLAMEVA KL+L NPP CAYQIR+AGCKGV+ACWP
Sbjct: 572 VDPELPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWP 631
Query: 2080 GKDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQD 2259
K DGIR+SLR SMNKF S HT LEI SWTRFQPGFLNRQI+TLLS L VPD +F MQD
Sbjct: 632 AKGDGIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQD 691
Query: 2260 SMVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLG 2439
SM+ +LN+ML + DVAF+++T++CAEQGNTAA+MLSAGF PQ+EPHLRGML IRAAQL
Sbjct: 692 SMLSKLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLW 751
Query: 2440 DLLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQV 2619
L KARIFV GRWLMGCLDELGVLE GQCFIQ S P L NCFS+HG +F+E K+ QV
Sbjct: 752 GLREKARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAETKK-LQV 810
Query: 2620 IKGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLY 2799
IKG VVIAKNPCLHPGDIR+LEAVD P L HL DCLVFPQKGDRPHTNEASGSDLDGDLY
Sbjct: 811 IKGFVVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLY 870
Query: 2800 FVTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVV 2979
FVTWDENL+PPSKKSWPPM+Y++ EAK LTRPV+ +DII+FF K+MVNE +GTICNAHVV
Sbjct: 871 FVTWDENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVV 930
Query: 2980 HADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSN 3159
HAD SEYGALDE CI LAELAATAVDF KTGK+V+MP LKPKLYPDFM KE +Q+YKSN
Sbjct: 931 HADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSN 990
Query: 3160 KILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQL 3339
KILGRLYR+ KD D DI S++ P DI YDT LE+P S DFI DAWNQKC+YDGQL
Sbjct: 991 KILGRLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQL 1050
Query: 3340 MALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDS 3519
LL QYKV+ EEE+VTGHIWSMPKYNSRKQG++KE++KHSY AL +EF+ +FE + D
Sbjct: 1051 NGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDC 1110
Query: 3520 LKLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDGDGAPAMLSFAWIPAEYLVRI 3699
L+EDEK L+E+KASAWYQVTYHP+WVKKSL+L++ D + +LSFAWI +YL RI
Sbjct: 1111 ELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARI 1170
Query: 3700 KVRHRRTENLDARKPINSLARYLAQRI 3780
K+R R N+D KP+N LARY+A RI
Sbjct: 1171 KIRCREMANIDTSKPVNYLARYVADRI 1197
Score = 398 bits (1022), Expect = e-107
Identities = 192/313 (61%), Positives = 238/313 (76%)
Frame = +3
Query: 240 ENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMNT 419
E +K +V QVSFGGFD+++ A EL +LENE+G +WRCRLK S TP ESYP+F + NT
Sbjct: 4 EGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSVTNT 63
Query: 420 ANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQK 599
A ++ TDDYEKVEPHAFVHFA P TRA++ AG EL LN L+VSLGPEN F +NQ+
Sbjct: 64 AEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRLNQR 123
Query: 600 RRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSFK 779
RT+ PFK +V VE+GTLVSRDEF V W+GP SG +F+VDPFD TCK FT++ AF+ K
Sbjct: 124 GRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAFALK 183
Query: 780 GTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVPF 959
+T+HAVIKC+FK+EFLVREI +KQY S + +LLQLASSP ++YRTADDDI VPF
Sbjct: 184 SSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVLVPF 243
Query: 960 DLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRPKL 1139
D+LDD+DPWIRT DFTP GAIGRCNSYRIS+S R KL K + YL E R+ D +
Sbjct: 244 DMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDSLSRPI 303
Query: 1140 TVQDEPDYGMPMS 1178
T+++EPD+ +PMS
Sbjct: 304 TIREEPDFEVPMS 316
>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 1289 bits (3336), Expect = 0.0
Identities = 626/867 (72%), Positives = 731/867 (84%), Gaps = 1/867 (0%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
V+F+VNAVMHKG+INQHQLSD FF+LLRSQ++++NIAAL+HICSYRHPVFDA +RLK V
Sbjct: 172 VMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVH 231
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
+WLLKNPKLLK+ D EVRRLVITP+KAYCLPPEVELSNRVLR YK+V+DRFLRVT
Sbjct: 232 KWLLKNPKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVT 291
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEGMQ +N++VL YYVAPIV+ ITSN FPQKT VFKRVKTI++ GFYLCGRKYSFLAF
Sbjct: 292 FMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAF 351
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
SSNQL+DRSAWFFAED K +V IK WMGKF +RN+AKC ARMG CFSSTYAT+ VPS E
Sbjct: 352 SSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWE 411
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
++PDI+RNGY+FSDGIG + PDLAMEVA KL+L P AYQIR+AGCKGV+ACWP
Sbjct: 412 VK-ELPDIKRNGYDFSDGIGKIVPDLAMEVAEKLKLE-GTPSAYQIRYAGCKGVVACWPS 469
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
+DGIRLS R SMNKF+SDHT+LEI SWTRFQPGFLNRQI+TLLSAL VPD +F KMQ+S
Sbjct: 470 DNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQES 529
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
M+ +LN+ML + DVAFD++ +SCAEQGNTAA+MLSAGF+PQ+EPHL+GML IRAAQ
Sbjct: 530 MISKLNQMLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWG 589
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L KARIFV GRWLMGCLDELGVLE GQCFIQ S+PSLENCF +HG +FS A++N +VI
Sbjct: 590 LREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFS-AQKNLKVI 648
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KG+V IAKNPCLHPGD+R+LEAVDAPGL HLVDCLVFPQKGDRPH+NEASGSDLDGDLYF
Sbjct: 649 KGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYF 708
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTW+E L+PPSK+SWPPM YDS EAK L R V + DIIDFFTKNMVNE +G ICNAHVVH
Sbjct: 709 VTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVH 768
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
AD SEYGALDE C+ LAE AATAVDF KTGK+V++P LKPK+YPDFM KE FQTY+SNK
Sbjct: 769 ADRSEYGALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNK 828
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
ILG++YR+IKD + D+ S+ + + +D L IPGSADFI+DAW KC+YDGQL
Sbjct: 829 ILGKMYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLN 888
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
LLGQYKV EEE+VTGH+WSMPKY SRKQG++ E++KH+Y +L +EF+ +FE + D
Sbjct: 889 GLLGQYKVKREEEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFD 948
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDG-DGAPAMLSFAWIPAEYLVRI 3699
+LT+DEK LYEQKASAWYQVTYHP WVKKSLEL++PD G MLSFAWI A+YL RI
Sbjct: 949 QLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARI 1008
Query: 3700 KVRHRRTENLDARKPINSLARYLAQRI 3780
K+R + T N+D+ KPINSLAR+L RI
Sbjct: 1009 KIRRKGTGNVDSSKPINSLARFLVDRI 1035
Score = 135 bits (340), Expect = 2e-28
Identities = 63/97 (64%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Frame = +3
Query: 894 LASSPLLFYRTADDDIYDSVPFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPK 1073
L+SSP ++YRTADDDI ++VPFDLLDD+DPWIRT DFT GAIGRCNSYRIS+ PR+G K
Sbjct: 60 LSSSPFVYYRTADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAK 119
Query: 1074 LEKSMKYLKEWRIP--NDCPRPKLTVQDEPDYGMPMS 1178
L+K+M YL+ R+ D P+ +L V+DEPD+G+PMS
Sbjct: 120 LKKAMDYLRARRVNVLEDSPKWQLRVRDEPDFGLPMS 156
>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 1289 bits (3336), Expect = 0.0
Identities = 626/867 (72%), Positives = 731/867 (84%), Gaps = 1/867 (0%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
V+F+VNAVMHKG+INQHQLSD FF+LLRSQ++++NIAAL+HICSYRHPVFDA +RLK V
Sbjct: 334 VMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVH 393
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
+WLLKNPKLLK+ D EVRRLVITP+KAYCLPPEVELSNRVLR YK+V+DRFLRVT
Sbjct: 394 KWLLKNPKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVT 453
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEGMQ +N++VL YYVAPIV+ ITSN FPQKT VFKRVKTI++ GFYLCGRKYSFLAF
Sbjct: 454 FMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAF 513
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
SSNQL+DRSAWFFAED K +V IK WMGKF +RN+AKC ARMG CFSSTYAT+ VPS E
Sbjct: 514 SSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWE 573
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
++PDI+RNGY+FSDGIG + PDLAMEVA KL+L P AYQIR+AGCKGV+ACWP
Sbjct: 574 VK-ELPDIKRNGYDFSDGIGKIVPDLAMEVAEKLKLE-GTPSAYQIRYAGCKGVVACWPS 631
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
+DGIRLS R SMNKF+SDHT+LEI SWTRFQPGFLNRQI+TLLSAL VPD +F KMQ+S
Sbjct: 632 DNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQES 691
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
M+ +LN+ML + DVAFD++ +SCAEQGNTAA+MLSAGF+PQ+EPHL+GML IRAAQ
Sbjct: 692 MISKLNQMLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWG 751
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L KARIFV GRWLMGCLDELGVLE GQCFIQ S+PSLENCF +HG +FS A++N +VI
Sbjct: 752 LREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFS-AQKNLKVI 810
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KG+V IAKNPCLHPGD+R+LEAVDAPGL HLVDCLVFPQKGDRPH+NEASGSDLDGDLYF
Sbjct: 811 KGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYF 870
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTW+E L+PPSK+SWPPM YDS EAK L R V + DIIDFFTKNMVNE +G ICNAHVVH
Sbjct: 871 VTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVH 930
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
AD SEYGALDE C+ LAE AATAVDF KTGK+V++P LKPK+YPDFM KE FQTY+SNK
Sbjct: 931 ADRSEYGALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNK 990
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
ILG++YR+IKD + D+ S+ + + +D L IPGSADFI+DAW KC+YDGQL
Sbjct: 991 ILGKMYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLN 1050
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
LLGQYKV EEE+VTGH+WSMPKY SRKQG++ E++KH+Y +L +EF+ +FE + D
Sbjct: 1051 GLLGQYKVKREEEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFD 1110
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDG-DGAPAMLSFAWIPAEYLVRI 3699
+LT+DEK LYEQKASAWYQVTYHP WVKKSLEL++PD G MLSFAWI A+YL RI
Sbjct: 1111 QLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARI 1170
Query: 3700 KVRHRRTENLDARKPINSLARYLAQRI 3780
K+R + T N+D+ KPINSLAR+L RI
Sbjct: 1171 KIRRKGTGNVDSSKPINSLARFLVDRI 1197
Score = 436 bits (1120), Expect = e-119
Identities = 205/316 (64%), Positives = 262/316 (82%), Gaps = 2/316 (0%)
Frame = +3
Query: 237 TENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMN 416
+E +KDMV+TQ+S GGFD++++A ELT +LE+ IG + RCRLK S TPPESYP+F++++
Sbjct: 3 SEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIID 62
Query: 417 TANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQ 596
TA I+ T+DY+KVEPHAFVHF SPEAAT AL+ AG EL L+ PL+VSLGPE FH+NQ
Sbjct: 63 TAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQ 122
Query: 597 KRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSF 776
+RRTT PFKF +V +E+G LVSRDE+ GW+GP+SGV+F+VDPFD TCK FTK+TAFSF
Sbjct: 123 RRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSF 182
Query: 777 KGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVP 956
KG KHAVIKC+FK+EFLVREI +++Q R +S LI+LLQL+SSP ++YRTADDDI ++VP
Sbjct: 183 KGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVP 242
Query: 957 FDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP--NDCPR 1130
FDLLDD+DPWIRT DFT GAIGRCNSYRIS+ PR+G KL+K+M YL+ R+ D P+
Sbjct: 243 FDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPK 302
Query: 1131 PKLTVQDEPDYGMPMS 1178
+L V+DEPD+G+PMS
Sbjct: 303 WQLRVRDEPDFGLPMS 318
>ref|XP_007225440.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
gi|462422376|gb|EMJ26639.1| hypothetical protein
PRUPE_ppa000422mg [Prunus persica]
Length = 1196
Score = 1283 bits (3319), Expect = 0.0
Identities = 617/867 (71%), Positives = 724/867 (83%), Gaps = 1/867 (0%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
++F+VNAVMHKG +NQHQLSD FF LLRSQ +E+N+AAL+H+CSYR PVFDAC+RLK VQ
Sbjct: 331 IMFLVNAVMHKGTVNQHQLSDSFFHLLRSQPKEINVAALKHLCSYRSPVFDACERLKVVQ 390
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
+WLLKNPKL+K+ D AEVRRLVITPTKAYCLPPEVELSNRVLRKYK+VADRFLRVT
Sbjct: 391 DWLLKNPKLVKDPKRLDDIAEVRRLVITPTKAYCLPPEVELSNRVLRKYKEVADRFLRVT 450
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEGMQ++NS+VL YYVAPIV++ITSN F QKT VFKR +TI++ GFYLCGRKY+FLAF
Sbjct: 451 FMDEGMQKINSNVLNYYVAPIVKEITSNSFLQKTNVFKRFRTILNDGFYLCGRKYTFLAF 510
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
SSNQL+DRSAWFFAE I+V I WMGKF ++N+AKC ARMG CFSSTYAT+ V S E
Sbjct: 511 SSNQLRDRSAWFFAECVNISVGKITSWMGKFNNKNVAKCAARMGQCFSSTYATVEVTSSE 570
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
N D+PDI+RNGY FSDGIGM+TPDLA+EVA KL+L NPPCAYQIRFAGCKGV+ACWP
Sbjct: 571 VN-DIPDIKRNGYVFSDGIGMITPDLALEVAEKLKLDRNPPCAYQIRFAGCKGVVACWPS 629
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
K DG RLSLR SMNKF S HT LEI SWTR+QPGFLNRQI+TLLS L V D +F +MQ+
Sbjct: 630 KGDGFRLSLRTSMNKFESKHTTLEICSWTRYQPGFLNRQIITLLSTLNVEDEIFWRMQEK 689
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
MV +LN+ML + DVAFD++T+SCAEQGN AA+MLSAGF+PQ+EPHLRGML I+AAQL
Sbjct: 690 MVLKLNQMLVDTDVAFDVLTASCAEQGNAAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWG 749
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L KARIFV GRWLMG LDELGVLE GQCF+Q STP LE+CF++HG F++ +RN QVI
Sbjct: 750 LREKARIFVHSGRWLMGVLDELGVLEQGQCFVQVSTPLLESCFAKHGSSFAQIERNLQVI 809
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KG VVIAKNPCLHPGDIR+LEAVDAPGL HL DCLVFPQKGDRPHT+EASGSDLDGDLYF
Sbjct: 810 KGHVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGDRPHTDEASGSDLDGDLYF 869
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTWDENL+PPSKKSW PM YD EAK RPV QDIIDFF KNM NE +G ICNAHVVH
Sbjct: 870 VTWDENLIPPSKKSWMPMQYDPAEAKLQGRPVTQQDIIDFFVKNMTNENLGPICNAHVVH 929
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
AD S+YGALD C++LAELAA AVDF KTGK+VS+PQ LKP+LYPDF+ KE Q+YKS K
Sbjct: 930 ADRSDYGALDVNCLKLAELAALAVDFPKTGKIVSLPQHLKPRLYPDFLGKEDNQSYKSTK 989
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
ILGRLYRK++D D D + S++ P DI YD LE+PG+ADF+ DAW +KC+YDGQL
Sbjct: 990 ILGRLYRKVRDAYDEDAATSSELHYFPSDIPYDMDLEVPGAADFVFDAWEKKCSYDGQLK 1049
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
L+GQYKV EEE+VTGH+WS+PK NS+KQG++KE++ HSY+AL +EF+ +FEN+ +
Sbjct: 1050 GLMGQYKVKREEEIVTGHVWSIPKSNSKKQGELKERLSHSYNALKKEFRQMFENLDSNLE 1109
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDGDG-APAMLSFAWIPAEYLVRI 3699
LT+DEK +L E+KASAWYQVTYHP+WVK+S L++PDG G MLSFAWI A+YL RI
Sbjct: 1110 ALTDDEKNLLCEKKASAWYQVTYHPKWVKQSPPLQEPDGPGDVVVMLSFAWIAADYLARI 1169
Query: 3700 KVRHRRTENLDARKPINSLARYLAQRI 3780
K++ E++D+ KPINSL RYLA RI
Sbjct: 1170 KIKCHGVEHIDSTKPINSLKRYLADRI 1196
Score = 422 bits (1085), Expect = e-115
Identities = 196/310 (63%), Positives = 244/310 (78%)
Frame = +3
Query: 240 ENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMNT 419
E + V+TQVSFGGF H AK+L +LE+EIG+++RCRLK SWTPPES+PNF++ NT
Sbjct: 4 EGSENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEI-NT 62
Query: 420 ANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQK 599
A+++ TDDY +VEPHAFVHF SP++ T A++ AG CEL N PL+VSLGPEN + +N++
Sbjct: 63 ADVKRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLNRR 122
Query: 600 RRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSFK 779
RRT PFK S+VHVE+G+LV +DEF W+GP GV+F+VDPFD TCK FT +TAFSFK
Sbjct: 123 RRTKTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFSFK 182
Query: 780 GTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVPF 959
GT KHAVIKCDFK+EFLVREI +IKQY S L++LL+L SSP + YRTADDDI SVPF
Sbjct: 183 GTKKHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSVPF 242
Query: 960 DLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRPKL 1139
DLLDD+DPWIRT DFTP GAIGRCNSYR+ + PR G KL+K+M YL+E R+ C +
Sbjct: 243 DLLDDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKWPP 302
Query: 1140 TVQDEPDYGM 1169
+QDEPD+GM
Sbjct: 303 KIQDEPDFGM 312
>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
vesca]
Length = 1197
Score = 1280 bits (3311), Expect = 0.0
Identities = 603/866 (69%), Positives = 715/866 (82%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
++F+VNAVMHKG++NQHQLS+ FF+LLR+Q E+N+AAL+H+CSY+HPVFDA KRLK VQ
Sbjct: 332 ILFLVNAVMHKGILNQHQLSESFFDLLRNQPEEINVAALKHLCSYKHPVFDASKRLKLVQ 391
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
EWLL+NPKL+KN D AEVRRLVITPTKAYCLPPEVELSNRVLRKYK+VADRFLRVT
Sbjct: 392 EWLLRNPKLIKNPKRLDDIAEVRRLVITPTKAYCLPPEVELSNRVLRKYKEVADRFLRVT 451
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEGMQ +NS+V+ YVAPIV++IT N FPQKT V+ R++ I+ GF+LCGRKYSFLAF
Sbjct: 452 FMDEGMQTMNSNVMNSYVAPIVKEITENTFPQKTKVYVRIRAILMNGFHLCGRKYSFLAF 511
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
SSNQL+DRSAWFFAED I++ IK+WMG+F +RN+AKC ARMG CFSSTYAT+ VPS +
Sbjct: 512 SSNQLRDRSAWFFAEDKTISIQGIKNWMGRFTNRNVAKCAARMGQCFSSTYATVEVPSTQ 571
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
N ++PDIERNGY FSDGIG +TPDLAMEVA KL+L +PP AYQIR+ GCKGV+ACWP
Sbjct: 572 VNHELPDIERNGYVFSDGIGRITPDLAMEVAEKLKLDRDPPSAYQIRYGGCKGVVACWPS 631
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
DG RLSLRRSMNKF SDHT LEI SWTR QPGFLNRQI+TLLSAL VPD +F MQ++
Sbjct: 632 TGDGFRLSLRRSMNKFASDHTTLEICSWTRLQPGFLNRQIITLLSALNVPDEIFWTMQET 691
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
MV +L +ML + DVAFD++T+SCAEQGN+AA+MLSAGF+PQ+EPHLRGML I+AAQL
Sbjct: 692 MVSKLKQMLVDTDVAFDVLTASCAEQGNSAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWG 751
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L K RIFV GRWLMGCLDELGVLE GQCF+Q STPSLENCF++HG +F + +N QVI
Sbjct: 752 LREKTRIFVPSGRWLMGCLDELGVLEQGQCFVQVSTPSLENCFAKHGSRFDQTDKNLQVI 811
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KG VV+AKNPCLHPGDIR+LEAVDAPGL HL DCLVFPQKG RPHT+EASGSDLDGDLYF
Sbjct: 812 KGFVVVAKNPCLHPGDIRILEAVDAPGLHHLHDCLVFPQKGHRPHTDEASGSDLDGDLYF 871
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTWDENL+PP KKSW PM+Y+ EAK R V +QD+I+FF +NMVNE +G ICNAHVVH
Sbjct: 872 VTWDENLIPPRKKSWQPMEYEPAEAKLSGRSVTSQDLIEFFVRNMVNENLGAICNAHVVH 931
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
+D SEYGA DE C++LAELAA AVDF KTGK+V+MP LKPKLYPDFM K+ +Q+YKSNK
Sbjct: 932 SDRSEYGAFDENCLKLAELAAVAVDFPKTGKIVTMPPHLKPKLYPDFMGKQDYQSYKSNK 991
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
ILGRLYRKI D D D+ + S+ + P D+ YD LE+P +ADFI DAW +KC+YD QL
Sbjct: 992 ILGRLYRKICDAYDEDVANSSEQNHVPSDVKYDMDLEVPKAADFIADAWERKCSYDSQLR 1051
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
L+ QYK+ EEE+VTGH+WSMPKY SRKQG+++E++KHSY AL +EF+ FE +
Sbjct: 1052 GLMTQYKIMREEEIVTGHVWSMPKYTSRKQGELQERLKHSYSALKKEFRQFFEKMDTGFE 1111
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDGDGAPAMLSFAWIPAEYLVRIK 3702
L +D+K YEQKASAWYQVTYHP WVKKSL+L PDG G MLSFAWI A+YL RIK
Sbjct: 1112 SLIDDQKNSFYEQKASAWYQVTYHPDWVKKSLDLHGPDGPGDVVMLSFAWIAADYLARIK 1171
Query: 3703 VRHRRTENLDARKPINSLARYLAQRI 3780
++ R N+D +KPIN L +YLA RI
Sbjct: 1172 IKRREVSNIDPKKPINILTKYLADRI 1197
Score = 394 bits (1012), Expect = e-106
Identities = 187/313 (59%), Positives = 232/313 (74%)
Frame = +3
Query: 240 ENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMNT 419
E + D V+TQVSFGGF H++AKEL +LE+EIG+++RCRLK SWTPPES PNF++ +
Sbjct: 4 EERENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEISDA 63
Query: 420 ANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQK 599
A+I+ TDDY KVEPHAFVHFASPE+ T ++ G C+L N L+ SLGPEN F++N++
Sbjct: 64 ADIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNMNKR 123
Query: 600 RRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSFK 779
RRT PFK ++V +E+G+LV DEF V WKGP GV+FVVDPFD TCK F ++TAFSFK
Sbjct: 124 RRTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAFSFK 183
Query: 780 GTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVPF 959
G KHAVI CDFK EF VREI + K Y ++LL+L SSP + YRTADDDI SV F
Sbjct: 184 GLNKHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQSVLF 243
Query: 960 DLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRPKL 1139
DLLDD+DPWIRT DFTP GAIGRCN YR+ + PR G KL+K+M YLKE R+ +
Sbjct: 244 DLLDDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQELFIKKPP 303
Query: 1140 TVQDEPDYGMPMS 1178
+QDEP +G PMS
Sbjct: 304 RIQDEPGFGNPMS 316
>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
6 [Theobroma cacao]
Length = 1197
Score = 1274 bits (3297), Expect = 0.0
Identities = 618/866 (71%), Positives = 719/866 (83%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
++F+VNAVMHKG+ NQHQLS+ FF LLR Q REVN+AAL+HI SYR PVFDA KRLK V
Sbjct: 332 IMFLVNAVMHKGIFNQHQLSEDFFNLLRDQPREVNVAALKHIYSYRRPVFDAYKRLKTVH 391
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
+WLL+NP L K+ D E+RRLVITPTKA+CL PEVELSNRVLRKYK+VADRFLRVT
Sbjct: 392 DWLLRNPILFKSPKQLDDIVEIRRLVITPTKAHCLLPEVELSNRVLRKYKEVADRFLRVT 451
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEGMQ +N++VLTYY A IVRD+TS F QKT VFKRV++I++ GFYLCGRKYSFLAF
Sbjct: 452 FMDEGMQTINANVLTYYAASIVRDVTSTFFSQKTGVFKRVRSILTDGFYLCGRKYSFLAF 511
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
S+NQL+D SAWFFAED K +VL I WMGKF +RNIAKC ARMG CFSSTYAT+ VPS E
Sbjct: 512 SANQLRDSSAWFFAEDGKTSVLQILRWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTE 571
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
N +PDIERNGY FSDGIG +TPDLA EVA KL+L NPPCAYQIR+AGCKGV+ACWP
Sbjct: 572 VNPFLPDIERNGYVFSDGIGKITPDLAKEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPE 631
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
+ DG+RLSLR SMNKF SDHT LEI SWTRFQPGFLNRQI+TLLS VPD VF +MQ++
Sbjct: 632 EGDGVRLSLRCSMNKFFSDHTTLEICSWTRFQPGFLNRQIITLLSTQYVPDEVFWEMQNT 691
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
MV +LN++L + DVAF+++TSSC+EQGN AA+MLSAGF+PQ+EPHLRG+L +RA+QL
Sbjct: 692 MVSKLNKILVDTDVAFEVLTSSCSEQGNAAAIMLSAGFKPQTEPHLRGILTCVRASQLCG 751
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L KARIFV GRWLMG LDELGVLE GQCFIQ S PS+ENCF +HG +F+E K+N +VI
Sbjct: 752 LREKARIFVPSGRWLMGVLDELGVLEQGQCFIQVSNPSVENCFLKHGSRFAETKKNFEVI 811
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
+GLVVIAKNPCLHPGDIR+LEAVDAPGL HL DCLVFPQKG+RPHTNEASGSDLDGDLYF
Sbjct: 812 QGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYF 871
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTW++ L+PP KKSWPPM YD E K++ R VN +DIIDFF KNMVNE +GTICNAHVVH
Sbjct: 872 VTWEDLLIPPGKKSWPPMQYDPGETKEIQREVNHKDIIDFFAKNMVNEHLGTICNAHVVH 931
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
ADLSEYGALDEKCI LAELAATAVDF KTGK+VSMP +LKPKLYPDFM KE +Q+YKS K
Sbjct: 932 ADLSEYGALDEKCIHLAELAATAVDFPKTGKIVSMPANLKPKLYPDFMGKEEYQSYKSRK 991
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
ILGRLYR IKD D D+ S+I+ DI YDT LE+ GSAD+IDDAW +KC+YD QL+
Sbjct: 992 ILGRLYRHIKDVYDEDLSESSEINLDSPDINYDTDLEVTGSADYIDDAWVKKCSYDRQLI 1051
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
LLGQYKV EEE+VTGHIWSMPKY SRK GD+KEK+ HSY AL +EF+ +FE++ +
Sbjct: 1052 GLLGQYKVKREEEVVTGHIWSMPKYTSRKLGDLKEKLGHSYGALRKEFRQIFESMDSEIE 1111
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDGDGAPAMLSFAWIPAEYLVRIK 3702
+L EDE+ LYE+KASAWYQVTYHP+WV+K LEL+ DG MLSFAWI A+YL RIK
Sbjct: 1112 QLNEDERNELYERKASAWYQVTYHPKWVEKKLELQKSDGADPVVMLSFAWIAADYLARIK 1171
Query: 3703 VRHRRTENLDARKPINSLARYLAQRI 3780
+R + T N+D KP+NSL +YLA +I
Sbjct: 1172 IRSQGTGNVDFSKPVNSLVKYLADKI 1197
Score = 425 bits (1093), Expect = e-116
Identities = 194/314 (61%), Positives = 255/314 (81%)
Frame = +3
Query: 237 TENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMN 416
++ +KD V+TQVS GGF +H++AK+L ++ +NE+GV+WRCRLK SWTPPESYPNF++++
Sbjct: 3 SQGSEKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEILD 62
Query: 417 TANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQ 596
+ IQ TDDY+KVEPHAFVHFASP AT A++ AG EL+ N L+VSLGPEN +++N+
Sbjct: 63 STVIQRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYLNR 122
Query: 597 KRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSF 776
+RR T PFK S+V +++G +VSRDEF VGW+GP GV+F+VDPFD TCK F+++TAFSF
Sbjct: 123 RRRNTTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAFSF 182
Query: 777 KGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVP 956
KGTT++AVIKCDFK+EFLVR+I +IKQY S L++ LQLASSP ++YRTADD+I +SVP
Sbjct: 183 KGTTEYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEESVP 242
Query: 957 FDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRPK 1136
FDLLDD+D WIRT DFTP GAIGRCN+YR+ + PR G KL+K++ YL+E R+P D R
Sbjct: 243 FDLLDDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVRWP 302
Query: 1137 LTVQDEPDYGMPMS 1178
L + DEPD+G MS
Sbjct: 303 LRISDEPDFGRSMS 316
>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1264 bits (3271), Expect = 0.0
Identities = 608/866 (70%), Positives = 720/866 (83%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
V+F+VNAV+HKG++NQHQ+++ FF LLRS++ EVN AAL+H+ SY+ PV DA ++L +Q
Sbjct: 332 VMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQ 391
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
+WLLKNPKLL + D EVRRLVITPTKAYCLPP VELSNRVLR YK VADRFLRVT
Sbjct: 392 KWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVT 451
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEGM+ LN +VLTYY A IVR+ITSN PQ+T +F+RVK+I+S GF+LCGRKYSFLAF
Sbjct: 452 FMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAF 511
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
S+NQL+DRSAWFFAED KI V I WMG+F +RN+AKC ARMG CFSSTYAT+ VPS E
Sbjct: 512 SANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSRE 571
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
N ++PDIERNGY FSDGIGM++ DLA+EVA KL L+ NPP AYQIR+AGCKGV+ACWP
Sbjct: 572 VNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPT 631
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
K+DGIRLSLR SM KF S+HT+LEI SWTRFQPGFLNRQI+TLLS+L+V D +F +MQ
Sbjct: 632 KNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKE 691
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
M+ L++ML + DVAFD+IT+SCAE GNTAA+MLSAGF+PQSEPHLRGML SIRA+QLGD
Sbjct: 692 MISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGD 751
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L KARIFV GRWLMGCLDELG LE GQCFIQ S+PSLENCF +HGPKFS+ K+N QV+
Sbjct: 752 LRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKQNLQVV 811
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KGLVVIAKNPCLHPGD+R+LEAVD P L HL DCLVFPQKGDRPH+NEASGSDLDGDLYF
Sbjct: 812 KGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYF 871
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTWDENL+PPSKKSW PM+Y+ E K+L R VN DIIDFF+KNMV E +G ICNAHVVH
Sbjct: 872 VTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVH 931
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
ADLSE+GALDEKC++LAELAA AVDF KTGK+V+MP LKPK+YPDFM KE FQ+YKS K
Sbjct: 932 ADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKK 991
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
ILG+LYR++KD D + + + P+DI YD+ LEI GS FIDDAWN KC+YDGQL
Sbjct: 992 ILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDSTLEILGSTAFIDDAWNSKCSYDGQLH 1051
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
LLGQYKV+ EEE+VTGHIWSMPKY+++KQG++KE++KH+Y+ L +EF+N+FE + D
Sbjct: 1052 GLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMDPDFD 1111
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDGDGAPAMLSFAWIPAEYLVRIK 3702
L +DEK +YE+KASAWYQVTYHP WV +SLEL+ PD MLSFAWI A+YL RIK
Sbjct: 1112 LLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQLPDAVSNTVMLSFAWIAADYLARIK 1171
Query: 3703 VRHRRTENLDARKPINSLARYLAQRI 3780
+RHRR + D+ KPINSL RYL I
Sbjct: 1172 IRHRRLQYSDSTKPINSLGRYLVDNI 1197
Score = 400 bits (1028), Expect = e-108
Identities = 190/317 (59%), Positives = 248/317 (78%), Gaps = 2/317 (0%)
Frame = +3
Query: 234 GTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLM 413
G+E +K++V+TQ+S GGFD ++AK L+++LE ++G +WRCRLK S TPP+SYP +D+
Sbjct: 2 GSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI- 60
Query: 414 NTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHIN 593
+ +Q ++YEKV PHAFVHFAS E+A AL AG ELIL + PL VSLGPEN + +N
Sbjct: 61 DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 594 QKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFS 773
Q+RRTT PFKFS+V VE+G LVS+D+F+VGW+GP +GV+F VDPF+ TCKI FTK+TAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFS 180
Query: 774 FKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSV 953
F+G +HA+IKC+FK+EF+VREI +IK+ + + L++LLQLASSPL+FYRTADDDI +SV
Sbjct: 181 FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 954 PFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP--NDCP 1127
FDLLDD+D WIRT D T GAIGRCN+YRIS+ PR GP EK+M Y R+P C
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 1128 RPKLTVQDEPDYGMPMS 1178
R L V+DEPD+G+ MS
Sbjct: 301 RKMLRVKDEPDFGVSMS 317
>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1263 bits (3269), Expect = 0.0
Identities = 608/866 (70%), Positives = 718/866 (82%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
V+F+VNAV+HKG++NQHQ+++ FF LLRS + EVN AAL+H+ SY+ PV DA ++L +Q
Sbjct: 332 VLFLVNAVLHKGIVNQHQMANEFFYLLRSHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQ 391
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
+WLLKNPKLL + D EVRRLVITPTKAYCLPP VELSNRVLR YK VADRFLRVT
Sbjct: 392 KWLLKNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVT 451
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEGM+ LN +VLTYY A IVR+ITSN PQ+T +F+RVK+I+S GF+LCGRKYSFLAF
Sbjct: 452 FMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAF 511
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
S+NQL+DRSAWFFAED KI V I WMG+F +RN+AKC ARMG CFSSTYAT+ VPS E
Sbjct: 512 SANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSE 571
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
N ++PDIERNGY FSDGIGM++ DLA+EVA KL L+ NPP AYQIR+AGCKGV+ACWP
Sbjct: 572 VNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPT 631
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
K+DGIRLSLR SM KF S+HT+LEI SWTRFQPGFLNRQI+TLLS+L+V D +F +MQ
Sbjct: 632 KNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKE 691
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
M+ L++ML + DVAFD+IT+SCAE GNTAA+MLSAGF+PQSEPHLRGML SIRA+QLGD
Sbjct: 692 MISGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGD 751
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L KARIFV GRWLMGCLDELG LE GQCFIQ S+PSLENCF +HGPKFS+ K+N QV+
Sbjct: 752 LRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVV 811
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KGLVVIAKNPCLHPGD+R+LEAVD P L HL DCLVFPQKGDRPH+NEASGSDLDGDLYF
Sbjct: 812 KGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYF 871
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTWDENL+PPSKKSW PM+Y+ E K+L R VN DIIDFF+KNMV E +G ICNAHVVH
Sbjct: 872 VTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVH 931
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
ADLSE+GALDEKC++LAELAA AVDF KTGK+V+MP LKPK+YPDFM KE FQ+YKS K
Sbjct: 932 ADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKK 991
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
ILG+LYR++KD D + + + P+DI YDT LEI GS FIDDAWN KC+YDGQL
Sbjct: 992 ILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLN 1051
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
LLGQYKV+ EEE+VTG+IWSMPKYN++KQG++KE++KH+Y+ L +EF+N+FE + D
Sbjct: 1052 GLLGQYKVNREEEVVTGYIWSMPKYNAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFD 1111
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDGDGAPAMLSFAWIPAEYLVRIK 3702
L +DEK +YE+KASAWYQVTYHP WV +SLEL+ D MLSFAWI A+YL RIK
Sbjct: 1112 LLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQLADAVSNTVMLSFAWIAADYLARIK 1171
Query: 3703 VRHRRTENLDARKPINSLARYLAQRI 3780
+RHRR + D+ KPINSL RYL I
Sbjct: 1172 IRHRRLQYSDSTKPINSLGRYLVDNI 1197
Score = 399 bits (1025), Expect = e-108
Identities = 190/317 (59%), Positives = 248/317 (78%), Gaps = 2/317 (0%)
Frame = +3
Query: 234 GTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLM 413
G+E +K++V+TQ+S GGFD ++AK L+++LE ++G +WRCRLK S TPP+SYP +D+
Sbjct: 2 GSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI- 60
Query: 414 NTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHIN 593
+ +Q ++YEKV PHAFVHFAS E+A AL AG ELIL + PL VSLGPEN + +N
Sbjct: 61 DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 594 QKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFS 773
Q+RRTT PFKFS+V VE+G LVS+D+F+VGW+GP +GV+F+VDPF+ TCKI FTK+TAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180
Query: 774 FKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSV 953
F+G +HA+IKC+FK+EFLVREI +IK+ + + L++L QLASSPL+FYRTADDDI +SV
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240
Query: 954 PFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP--NDCP 1127
FDLLDD+D WIRT D T GAIGRCN+YRIS+ PR GP EK+M Y R+P C
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300
Query: 1128 RPKLTVQDEPDYGMPMS 1178
R L V+DEPD+G+ MS
Sbjct: 301 RKMLRVKDEPDFGVSMS 317
>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
6 [Gossypium hirsutum]
Length = 1196
Score = 1263 bits (3269), Expect = 0.0
Identities = 615/866 (71%), Positives = 714/866 (82%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
++F+VNAV+HKG+ NQHQLS FF LLR+Q EVN+AAL+HI SYRHPV+DA +RLK V
Sbjct: 331 IMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSMEVNVAALKHIYSYRHPVYDAYERLKDVH 390
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
+WLLKNPKL K+ D E+RRLVITPTKAYCL PEVELSNRVLRKYKDVADRFLRVT
Sbjct: 391 DWLLKNPKLFKSPPQLDDIVEIRRLVITPTKAYCLLPEVELSNRVLRKYKDVADRFLRVT 450
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEGMQ +N++VLTYY A IVRD+TS F QKT VFKRVK+I++ GFYLCGRKYSFLAF
Sbjct: 451 FMDEGMQIMNANVLTYYNAAIVRDVTSTSFSQKTGVFKRVKSILTDGFYLCGRKYSFLAF 510
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
S+NQL+DR+AWFFAED KI VL I WMGKF +RNIAKC ARMG CFSSTYAT+ VPS +
Sbjct: 511 SANQLRDRAAWFFAEDGKINVLQIIGWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSGQ 570
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
N+ +PDI+RNGY+FSDGIG +TPDLAMEVA KL+L NPPCAYQIR+AGCKGV+ACWP
Sbjct: 571 VNMHLPDIKRNGYDFSDGIGKITPDLAMEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPE 630
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
+ D IRLSLR SM KF S HT LEI SWTRFQPGFLNRQI+TLLS L VPD VF MQ+S
Sbjct: 631 EGDRIRLSLRSSMIKFFSHHTTLEICSWTRFQPGFLNRQIITLLSTLGVPDEVFWGMQNS 690
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
MV +L+++L + D AF+++ SSC EQG+T A+MLSAGF+PQ+EPHLRGML +RA+QL
Sbjct: 691 MVSKLDKVLVDTDAAFEVVISSCGEQGHTPAIMLSAGFKPQTEPHLRGMLTCVRASQLWG 750
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L K+RIF+ GRWLMG LDELGVLE GQCFIQ S PSL+NCF +HG +F+E K+N +VI
Sbjct: 751 LREKSRIFIHSGRWLMGVLDELGVLEQGQCFIQVSNPSLQNCFLKHGSRFAETKKNFEVI 810
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KGLVVIAKNPCLHPGDIR+LEAVDAPGL HL DCLVFPQKG+RPHTNEASGSDLDGDLYF
Sbjct: 811 KGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYF 870
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTW+E L+PPSKKS PM YD ++L R V +DII+FF+KNMVNE +G+ICNAHVVH
Sbjct: 871 VTWEEALIPPSKKSSQPMQYDLDAPRELNRSVTHKDIIEFFSKNMVNEHLGSICNAHVVH 930
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
+DLSE+GA DEKCI LAELAA AVDF KTGK+VSMP LKPKLYPDFM KE FQ+YKSNK
Sbjct: 931 SDLSEHGASDEKCIHLAELAAIAVDFPKTGKIVSMPAQLKPKLYPDFMGKEEFQSYKSNK 990
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
ILGRLYR IKD D D+ S+++ DI YD LEI GSAD+I DAW +KC+YDGQL+
Sbjct: 991 ILGRLYRYIKDAYDKDVSESSELNFGASDINYDADLEITGSADYITDAWAKKCSYDGQLI 1050
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
LL QYKV EEE+VTG IWSMPKY S+K GD+KEK+ HSY +L +EF+ LFEN+ +
Sbjct: 1051 GLLKQYKVKREEEVVTGQIWSMPKYASKKLGDLKEKLGHSYGSLRKEFRQLFENMDSEFE 1110
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDGDGAPAMLSFAWIPAEYLVRIK 3702
+L EDEK LYE+KASAWYQVTYHP+WV+K LE + PDGD MLSFAWI A+YL RIK
Sbjct: 1111 QLNEDEKNKLYERKASAWYQVTYHPEWVQKKLEFQKPDGDEGVVMLSFAWIAADYLARIK 1170
Query: 3703 VRHRRTENLDARKPINSLARYLAQRI 3780
VRH+ TENLD KP+NSL RYLA RI
Sbjct: 1171 VRHQGTENLDFAKPVNSLVRYLADRI 1196
Score = 414 bits (1063), Expect = e-112
Identities = 191/313 (61%), Positives = 247/313 (78%)
Frame = +3
Query: 240 ENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMNT 419
E K+ V+TQVS GGFD+H+ A++L +LENE+G++WRCRLK SWTPPESYPNF++ +T
Sbjct: 4 EGSVKETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEITDT 63
Query: 420 ANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQK 599
IQ D+Y+KVEPHAFVHFASP+A T A++ AG EL N L+VSLGPEN +++N++
Sbjct: 64 TVIQRKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYLNRR 123
Query: 600 RRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSFK 779
RR T PFK +V +E+GTL S DEF+VGW+GP SGV F+VDPFD TCK F+++TAFSFK
Sbjct: 124 RRDTTPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAFSFK 183
Query: 780 GTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVPF 959
GT +HAVIKCDFK+EFLVREI ++KQY + ++LLQLASSP ++YRTADDD +VPF
Sbjct: 184 GTNEHAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKTVPF 243
Query: 960 DLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRPKL 1139
LLDD+D WIRT DFT GAIGRCN+YR+ + PR G KL+K+M YL+E R+P + R +L
Sbjct: 244 GLLDDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLRSQL 303
Query: 1140 TVQDEPDYGMPMS 1178
++DEPD+G MS
Sbjct: 304 RIRDEPDFGRSMS 316
>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 1263 bits (3269), Expect = 0.0
Identities = 606/866 (69%), Positives = 719/866 (83%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
V+F+ NAV+HKG++NQHQ+ + FF LLRS + EVN+AAL+H+ SY+ PV DA ++L +Q
Sbjct: 332 VLFLANAVLHKGIVNQHQMINEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQ 391
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
+WLLKNPKLL+ + D EVRRLVITPTKAYCLPP VELSNRVLR YK VADRFLRVT
Sbjct: 392 KWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVT 451
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEGM+ LN +VLTYY A IVR+ITSN PQ+T +F+RVK+I+S GF+LCGRKYSFLAF
Sbjct: 452 FMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAF 511
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
S+NQL+DRSAWFFAED KI V I WMG+F +RN+AKC ARMG CFSSTYAT+ VPS E
Sbjct: 512 SANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSE 571
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
N ++PDIERNGY FSDGIGM++ DLA+EVA KL L+ NPP AYQIR+AGCKGV+ACWP
Sbjct: 572 VNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPPAAYQIRYAGCKGVVACWPT 631
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
K+DGIRLSLR SM KF S+HT+LEI SWTRFQPGFLNRQI+TLLS+L+V D +F +MQ
Sbjct: 632 KNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKE 691
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
M+ L++ML + DVAFD+IT+SCAE GNTAA+MLSAGF+PQSEPHLRGML SIRA+QLGD
Sbjct: 692 MIAGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGD 751
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L KARIFV GRWLMGCLDELG LE GQCFIQ S+PSLENCF +HG KFS+ K+N QV+
Sbjct: 752 LRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGSKFSDIKKNLQVV 811
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KGLVVIAKNPCLHPGD+R+LEAVD P L HL DCLVFPQKGDRPH+NEASGSDLDGDLYF
Sbjct: 812 KGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYF 871
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTWDEN++PPSKKSW PM+Y+ E K+L R VN DIIDFF+KNMV E +G ICNAHVVH
Sbjct: 872 VTWDENIIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVH 931
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
ADLSE+GALDEKC++LAELAA AVDF KTGK+V+MP LKPK+YPDFM KE FQ+YKS K
Sbjct: 932 ADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKK 991
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
ILG+LYR++KD D + + + P+DI YDT LEI GS FIDDAWN KC+YDGQL
Sbjct: 992 ILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLN 1051
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
LLGQYKV+ EEE+VTGHIWSMPKY+++KQG++KE++KH+Y+ L +EF+N+FE + D
Sbjct: 1052 GLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFD 1111
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDGDGAPAMLSFAWIPAEYLVRIK 3702
L +DEK +YE+KASAWYQVTYHP WV +SLEL+ PD + MLSFAWI A+YL RIK
Sbjct: 1112 LLPDDEKNDMYERKASAWYQVTYHPHWVARSLELQIPDAVSSTVMLSFAWIAADYLARIK 1171
Query: 3703 VRHRRTENLDARKPINSLARYLAQRI 3780
+RHR D+ KPINSL RYLA +I
Sbjct: 1172 IRHRGLPYSDSTKPINSLGRYLADKI 1197
Score = 397 bits (1020), Expect = e-107
Identities = 188/317 (59%), Positives = 246/317 (77%), Gaps = 2/317 (0%)
Frame = +3
Query: 234 GTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLM 413
G+E +K++V+TQ+S GGFD ++AK L+++LE ++G +WRCRLK S TPP+SYP +D+
Sbjct: 2 GSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI- 60
Query: 414 NTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHIN 593
+ +Q ++YEKV PHAFVHFAS E+A AL AG EL+L + PL VSLGPEN + +N
Sbjct: 61 DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120
Query: 594 QKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFS 773
Q+RRTT PFKFS+V VE+G LVS+ +F+VGW+GP +GV+F+VDPF+ TCKI FTK+T FS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180
Query: 774 FKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSV 953
F+G +HA+IKC+FK+EFLVREI +IK+ + L++LLQLASSPL+FYRTADDDI +SV
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 954 PFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP--NDCP 1127
FDLLDD+D WIRT D T GAIGRCN+YRIS+ PR GP EK+M Y R+P C
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 1128 RPKLTVQDEPDYGMPMS 1178
R L V+DEPD+G+ MS
Sbjct: 301 RKMLRVRDEPDFGVSMS 317
>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 1263 bits (3268), Expect = 0.0
Identities = 606/866 (69%), Positives = 722/866 (83%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
V+F+VNAV+HKG++NQHQ+++ FF LLRS + EVN+AAL+H+ SY+ PV DA ++L ++
Sbjct: 332 VMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAIQKLVGIR 391
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
+WLLKNPKLL+ + D EVRRLVITPTKAYCLPP VELSNRVLR YK VADRFLRVT
Sbjct: 392 KWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVT 451
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEGM+ LN +VLTYY A IVR+ITSN PQ+T +F+RVK+I+S GF+LCGRKYSFLAF
Sbjct: 452 FMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAF 511
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
S+NQL+DRSAWFFAED KI V I WMG+F +RN+AKC ARMG CFSSTYAT+ VPS E
Sbjct: 512 SANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSE 571
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
N ++PDIERNGY FSDGIGM++ DLA+EVA KL L+ NPP AYQIR+AGCKGV+ACWP
Sbjct: 572 VNSELPDIERNGYVFSDGIGMISADLAVEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPT 631
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
K+DGIRLSLR SM KF S+HT+LEI SWTRFQPGFLNRQI+TLLS+L+V D +F +MQ
Sbjct: 632 KNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKE 691
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
M+ L++ML + DVAFD+IT+SCAE GNTAA+MLSAGF+PQSEPHLRGML SIRA+QLGD
Sbjct: 692 MISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGD 751
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L KARIFV GRWLMGCLDELG LE GQCFIQ S+PSLENCF +HGPKFS+ K+N QV+
Sbjct: 752 LRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVV 811
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KGLVVIAKNPCLHPGD+R+LEAVD PGL HL DCLVFPQKGDRPH+NEASGSDLDGDLYF
Sbjct: 812 KGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYF 871
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTWDENL+PPSKKSW PM+Y+ E K++ R VN DIIDFF+KNMV E +G ICNAHVVH
Sbjct: 872 VTWDENLIPPSKKSWIPMNYEPAEVKQMGRQVNHMDIIDFFSKNMVQESLGEICNAHVVH 931
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
ADLSE+GALDEKC++LAELAA AVDF KTGK+V+MP LKPK+YPDFM KE FQ+YKS K
Sbjct: 932 ADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKK 991
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
ILG+LYR++KD D + + + P DI YD+ LEIPGS FIDDAWN KC+YDGQL
Sbjct: 992 ILGKLYRQVKDVCDTEGEVSAGLELVPNDIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLH 1051
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
LLGQYKV+ EEE+VTGHIWSMPKY+++KQG++KE++KH+Y+ L +EF+N+FE + D
Sbjct: 1052 GLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFD 1111
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDGDGAPAMLSFAWIPAEYLVRIK 3702
L +DEK +YE+KASAWYQVTY+P WV +SLEL+ PD + MLSFAWI A+YL RIK
Sbjct: 1112 LLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAVSSTVMLSFAWIAADYLARIK 1171
Query: 3703 VRHRRTENLDARKPINSLARYLAQRI 3780
+RHR + D+ KPINSL RYL I
Sbjct: 1172 IRHRGLQYSDSTKPINSLGRYLVDNI 1197
Score = 404 bits (1037), Expect = e-109
Identities = 192/317 (60%), Positives = 247/317 (77%), Gaps = 2/317 (0%)
Frame = +3
Query: 234 GTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLM 413
G+E +KD+V+TQ+S GGFD ++AK L+++LE ++G +WRCRLK S TPP+SYP FD+
Sbjct: 2 GSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV- 60
Query: 414 NTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHIN 593
+ +Q DYEKV PHAFVHFAS E+A AL AG ELIL + PL VSLGPEN + +N
Sbjct: 61 DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 594 QKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFS 773
Q+RRTT PFKFS+V +E+G LVS+D+F+VGW+GP +GV+F+VDPF+ CKI FTK+TAFS
Sbjct: 121 QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180
Query: 774 FKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSV 953
F+G +HA+IKC+FK+EFLVREI +IK+ + + L++LLQLASSPL+FYRTADDDI +SV
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 954 PFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP--NDCP 1127
FDLLDD+D WIRT D T GAIGRCN+YRIS+ PR GP EK+M Y R+P C
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 1128 RPKLTVQDEPDYGMPMS 1178
R L V+DEPD+G+ MS
Sbjct: 301 RKMLRVRDEPDFGVSMS 317
>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 1259 bits (3257), Expect = 0.0
Identities = 605/866 (69%), Positives = 720/866 (83%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
V+F+VNAV+HKG++NQHQ+++ FF LLRS++ EVN+AAL+H+ SY+ PV DA ++L +Q
Sbjct: 332 VMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQ 391
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
+WLLKNPKLL+ + D EVRRLVITPTKAYCLPP VELSNRVLR YK VADRFLRVT
Sbjct: 392 KWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVT 451
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEGM+ LN +VLTYY A IVR+ITSN PQ+T +F+RVK+I+S GF+LCGRKYSFLAF
Sbjct: 452 FMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAF 511
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
S+NQL+DRSAWFFAED KI V I WMG+F +RN+AKC ARMG CFSSTYAT+ VPS E
Sbjct: 512 SANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSE 571
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
N ++PDIERNGY FSDGIGM++ DLA+EVA KL L NPP AYQIR+AG KGV+ACWP
Sbjct: 572 VNSELPDIERNGYVFSDGIGMISADLAIEVAEKLHLNVNPPSAYQIRYAGYKGVVACWPT 631
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
K+DGI LSLR SM KF S+HT+LEI SWTRFQPGFLNRQI+TLLS+L+V D +F +MQ
Sbjct: 632 KNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKE 691
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
M+ L++ML + DVAFD+IT+SCAE GNTAA+MLSAGF+PQSEPHLRGML SIRA+QLGD
Sbjct: 692 MISGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGD 751
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L KARIFV GRWLMGCLDELG LE GQCFIQ S+PSLENCF +HGPKFS+ K+N QV+
Sbjct: 752 LRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVV 811
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KGLVVIAKNPCLHPGD+R+LEAVD P L HL DCLVFPQKGDRPH+NEASGSDLDGDLYF
Sbjct: 812 KGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYF 871
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTWDENL+PPSKKSW PM+Y+ E K+L R VN DIIDFF+KNMV E +G ICNAHVVH
Sbjct: 872 VTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVH 931
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
ADLSE+GALDEKC++LAELAA AVDF KTGK+V+MP LKPK+YPDFM KE FQ+YKS K
Sbjct: 932 ADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKK 991
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
ILG+LYR++KD D + + + P+DI YDT L IPGS FIDDAWN KC+YDGQL
Sbjct: 992 ILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLH 1051
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
LLGQYKV+ EEE+VTGHIWSMPKY+++KQG++KE++KH+Y+ L +EF+N+FE + D
Sbjct: 1052 GLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMDPDFD 1111
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDGDGAPAMLSFAWIPAEYLVRIK 3702
L +DEK +YE+KASAWYQVTY+P WV +SLEL+ PD + MLSFAWI A+YL RIK
Sbjct: 1112 LLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAISSTVMLSFAWIAADYLARIK 1171
Query: 3703 VRHRRTENLDARKPINSLARYLAQRI 3780
+RHR + D+ KPINSL RYL +I
Sbjct: 1172 IRHRGLQYSDSTKPINSLGRYLVDKI 1197
Score = 401 bits (1031), Expect = e-108
Identities = 191/317 (60%), Positives = 246/317 (77%), Gaps = 2/317 (0%)
Frame = +3
Query: 234 GTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLM 413
G+E +KD+V+TQ+S GGFD ++AK L+++LE ++G +WRCRLK S TPP+SYP +D+
Sbjct: 2 GSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI- 60
Query: 414 NTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHIN 593
+ + DYEKV PHAFVHFAS E+A AL AG ELIL + PL VSLGPEN + +N
Sbjct: 61 DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120
Query: 594 QKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFS 773
Q+RRTT PFKFS+V VE+G LVS+D+F+VGW+GP +GV+F+VDPF+ TCKI FTK+TAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180
Query: 774 FKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSV 953
F+G +HA+IKC+FK+EFLVREI +IK+ + + L++L QLASSPL+FYRTADDDI +SV
Sbjct: 181 FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240
Query: 954 PFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP--NDCP 1127
FDLLDD+D WIRT D T GAIGRCN+YRIS+ PR GP EK+M Y R+P C
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300
Query: 1128 RPKLTVQDEPDYGMPMS 1178
R L V+DEPD+G+ MS
Sbjct: 301 RKMLRVKDEPDFGVSMS 317
>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 1258 bits (3254), Expect = 0.0
Identities = 605/866 (69%), Positives = 719/866 (83%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
V+F+VNAV+HKG++NQHQ+++ FF LLRS + EVN+AAL+H+ SY+ PV DA ++L +Q
Sbjct: 332 VMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQ 391
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
+WLLKNPKLL+ + D EVRRLVITPTKAYCLPP VELSNRVLR YK VADRFLRVT
Sbjct: 392 KWLLKNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVT 451
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEGM+ LN +VLTYY A IVR+ITSN PQ+T +F+RVK+I+S GF+LCGRKYSFLAF
Sbjct: 452 FMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAF 511
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
S+NQL+DRSAWFFAED KI V I WMG+F +RN+AKC ARMG CFSSTYAT+ VPS E
Sbjct: 512 SANQLRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSE 571
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
N ++PDIERNGY FSDGIGM++ DLA+EVA KL L+ NPP AYQIR+AGCKGV+ACWP
Sbjct: 572 VNSELPDIERNGYVFSDGIGMISADLALEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPT 631
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
K+DGI LSLR SM KF S+HT+LEI SWTRFQPGFLNRQI+TLLS+L+V D +F +MQ
Sbjct: 632 KNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKE 691
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
M+ LN+ML + DVAFD+IT+SCAE GNTAA+MLSAGF+PQSEPHLRGML SIRA+QLGD
Sbjct: 692 MISGLNKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGD 751
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L KARIFV GRWLMGCLDELG LE GQCFIQ S+PSLENCF +HGPKFS+ K+N QV+
Sbjct: 752 LRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVV 811
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KGLVVIAKNPCLHPGD+R+LEAVD PGL HL DCLVFPQKGDRPH+NEASGSDLDGDLYF
Sbjct: 812 KGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYF 871
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTWDENL+PPSKKSW PM+Y+ E K+L R VN DIIDFF+KNMV E +G ICNAHVVH
Sbjct: 872 VTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVH 931
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
ADLSE+GALDEKC++LAELAA AVDF KTGK+V+MP LKPK+YPDFM KE FQ+YKS K
Sbjct: 932 ADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKK 991
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
ILG+LYR++KD D + + + P DI YD+ LEIPGS F+ DAWN KC+YDGQL
Sbjct: 992 ILGKLYRQVKDVCDTEGEVSAGLELVPNDIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLH 1051
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
LLGQYKV+ EEE+VTGHIWSMPKY+++KQG++KE++KH+Y+ L +EF+N+FE + D
Sbjct: 1052 GLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNMLRKEFRNVFERMDPDFD 1111
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDGDGAPAMLSFAWIPAEYLVRIK 3702
L +DEK +YE+KASAWYQVTY+P WV +SLEL+ PD + MLSFAWI A+YL RI
Sbjct: 1112 LLPDDEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAVSSTVMLSFAWIAADYLARIN 1171
Query: 3703 VRHRRTENLDARKPINSLARYLAQRI 3780
+RHR + D+ KPINSL RYL I
Sbjct: 1172 IRHRGLQYSDSTKPINSLGRYLVDNI 1197
Score = 401 bits (1030), Expect = e-108
Identities = 191/317 (60%), Positives = 246/317 (77%), Gaps = 2/317 (0%)
Frame = +3
Query: 234 GTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLM 413
G+E +KD+V+TQ+S GGFD ++AK L+++LE ++G +WRCRLK S TPP+SYP +D+
Sbjct: 2 GSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV- 60
Query: 414 NTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHIN 593
+ A + DYEKV PHAFVHFAS E+A AL AG LIL + PL VSLGPEN + +N
Sbjct: 61 DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLN 120
Query: 594 QKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFS 773
Q+RRTT PFKFS+V VE+G LVS+D+F+VGW+GP +GV+F VDPF+ CKI FTK+TAFS
Sbjct: 121 QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFS 180
Query: 774 FKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSV 953
F+G KHA+IKC+FK+EF+VREI +IK+++ + L++LLQLASSPL+FYRTADDDI +SV
Sbjct: 181 FRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESV 240
Query: 954 PFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIP--NDCP 1127
FDLLDD+D WIRT D T GAIGRCN+YRIS+ PR GP EK+M Y R+P C
Sbjct: 241 AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300
Query: 1128 RPKLTVQDEPDYGMPMS 1178
R L V+DEPD+G+ MS
Sbjct: 301 RKMLRVRDEPDFGVSMS 317
>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
Length = 1194
Score = 1255 bits (3247), Expect = 0.0
Identities = 603/867 (69%), Positives = 714/867 (82%), Gaps = 1/867 (0%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
++F++N ++HKG+ NQH +SD F+L R+Q RE+N+AAL+HI SY+ PVFDA +LK VQ
Sbjct: 328 IMFLLNVIVHKGIFNQHNISDGLFDLFRNQPREINLAALKHISSYKRPVFDAYAKLKNVQ 387
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
EWLL+NPKLLK D AEVRRLVITPT+AYCLPPEVELSNRVLRKYK+V+DRFLRVT
Sbjct: 388 EWLLRNPKLLKIPRQLDDIAEVRRLVITPTRAYCLPPEVELSNRVLRKYKEVSDRFLRVT 447
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEGMQ +N +VLTYY APIV+++TSN QKT VFKRVK++++ GFYLCG++YSFLAF
Sbjct: 448 FMDEGMQTMNLNVLTYYPAPIVKELTSNSTSQKTKVFKRVKSLLTDGFYLCGQRYSFLAF 507
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
SSNQL+DRSAWFFAED KITV IK WMG+F +RNIAKC ARMG CFSSTYAT+ VP E
Sbjct: 508 SSNQLRDRSAWFFAEDGKITVNGIKKWMGRFNNRNIAKCAARMGQCFSSTYATVEVPLTE 567
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
N D+ +IERN Y FSDGIGM+TPDLA EVA KL+L NPP AYQIR+AGCKGV+ACWP
Sbjct: 568 VNFDLEEIERNTYVFSDGIGMITPDLAKEVAEKLKLDINPPSAYQIRYAGCKGVVACWPP 627
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
K DGIRLSLRRSMNKF S HT+LEI SWTRFQPGFLNRQI+TLLS L V D +F KMQ++
Sbjct: 628 KGDGIRLSLRRSMNKFDSKHTILEICSWTRFQPGFLNRQIVTLLSTLNVRDEIFWKMQET 687
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
M+ +LN+ML + DVAF+++T+SC EQGN A+MLSAGF+PQSEPHL+GML IRAAQL
Sbjct: 688 MLFKLNQMLTDADVAFNVLTASCPEQGNVGAIMLSAGFKPQSEPHLQGMLTCIRAAQLWG 747
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L KARIFV GRWLMGCLDELGVLE GQCFIQ STPSLENCFS+HG +FSE K N +VI
Sbjct: 748 LREKARIFVPLGRWLMGCLDELGVLEQGQCFIQVSTPSLENCFSKHGSRFSETKNNLEVI 807
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KG VVIAKNPCLHPGDIR+LEAVD PGL HL DCLVFPQKGDRPH NEASGSDLDGDLYF
Sbjct: 808 KGFVVIAKNPCLHPGDIRILEAVDVPGLHHLYDCLVFPQKGDRPHANEASGSDLDGDLYF 867
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTWDENL+PPSKKSW PM YD + + L R V +DIIDFF++NMVNE +G ICNAHVVH
Sbjct: 868 VTWDENLIPPSKKSWNPMQYDPAKPRTLPRDVTQKDIIDFFSRNMVNESLGAICNAHVVH 927
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
ADLS+YGALDEKC+ LAELAA AVDF KTG +V+MP LKPK+YPDFM KE +Q+YKS K
Sbjct: 928 ADLSDYGALDEKCLSLAELAAIAVDFPKTGIIVTMPAHLKPKIYPDFMGKEEYQSYKSTK 987
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
I+GRLYR+IKD D+ S+++ +I +DT LE+PG+ADF+DDAW +KC+YDGQL
Sbjct: 988 IMGRLYRQIKDEYSDDVSPSSELNIVSSNIPFDTDLEVPGAADFLDDAWEKKCSYDGQLK 1047
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
L+ QYKV EEE+VTG IWSMPK+NSRK+GD+KE++KHSY L +EF+ +FE V D
Sbjct: 1048 GLMIQYKVKREEEVVTGQIWSMPKHNSRKEGDLKERLKHSYTGLRKEFRQVFEKVDSDFE 1107
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDP-DGDGAPAMLSFAWIPAEYLVRI 3699
+LT+DEK VLYE++ASAWYQ+TYHP+WVKKS ++ D + MLSFAWI A+YL RI
Sbjct: 1108 QLTDDEKNVLYEKRASAWYQITYHPKWVKKSQDMHDQLEEVKNVVMLSFAWIAADYLARI 1167
Query: 3700 KVRHRRTENLDARKPINSLARYLAQRI 3780
K+R R + D+ KPINSL +YLA RI
Sbjct: 1168 KIRCRGVGDADSTKPINSLGKYLADRI 1194
Score = 383 bits (983), Expect = e-103
Identities = 184/313 (58%), Positives = 235/313 (75%)
Frame = +3
Query: 240 ENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMNT 419
E +KD V+TQ+S GGFD+H+ AK+L DFLE E+G+++RCRLK S T ESYP F+ +N+
Sbjct: 4 EGSEKDTVVTQISIGGFDRHVKAKDLMDFLEYEVGIVYRCRLKTSCTARESYPTFENINS 63
Query: 420 ANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQK 599
NI + D +VEPHAFVHFASPE+ L+ L+LN L+V+LGPE + +NQ+
Sbjct: 64 ENIMESIDIRQVEPHAFVHFASPESVNWTLSNP----LMLNNQTLKVTLGPETLYRMNQR 119
Query: 600 RRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSFK 779
RRTT P K ++V VE+G LV RDEF V W+GP+ GV+F+VDPFD CK FT++TAFSFK
Sbjct: 120 RRTTTPIKLADVIVEIGNLVRRDEFFVAWRGPSYGVDFLVDPFDGLCKFCFTRDTAFSFK 179
Query: 780 GTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVPF 959
K A++KCDFK+EFLVR+I +IKQY S L++LL LASSP ++YRTADDDI SVPF
Sbjct: 180 DMAKLAMMKCDFKVEFLVRDINEIKQYTDTSHLVVLLLLASSPRVWYRTADDDIEVSVPF 239
Query: 960 DLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRPKL 1139
DLLDD+DPWIRT DFTP GAIGRCNSYR+S+ PR G KL+K+M YL+E R+ R L
Sbjct: 240 DLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGSKLKKAMSYLRERRVQETPLRKAL 299
Query: 1140 TVQDEPDYGMPMS 1178
+Q EPD+ +PMS
Sbjct: 300 RIQSEPDFAVPMS 312
>ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName:
Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6;
AltName: Full=Protein SILENCING DEFECTIVE 1; AltName:
Full=Protein SUPPRESSOR OF GENE SILENCING 2; AltName:
Full=RNA-directed RNA polymerase 6
gi|12324444|gb|AAG52184.1|AC012329_11 putative
RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
thaliana] gi|6899955|emb|CAB71285.1| RNA-directed RNA
polymerase-like protein [Arabidopsis thaliana]
gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase
6 [Arabidopsis thaliana]
Length = 1196
Score = 1243 bits (3217), Expect = 0.0
Identities = 590/867 (68%), Positives = 720/867 (83%), Gaps = 1/867 (0%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
++F+VN+V+H+GV NQ QL++ FF+LLR+Q ++VNIA+L+H+C+Y+ PVFDA KRLK VQ
Sbjct: 330 IMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQ 389
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
EW+ KNPKLL + S+ +E+RRLVITPT+AYCLPPEVELSNRVLR+YK VA+RFLRVT
Sbjct: 390 EWIQKNPKLLGSHEQSEDISEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVT 449
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDE MQ +NS+VL+Y+VAPIV+D+TS+ F QKT VFKRVK+I++ GF LCGRKYSFLAF
Sbjct: 450 FMDESMQTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAF 509
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
S+NQL+DRSAWFFAED K V +IK WMGKF D+N+AKC ARMGLCFSSTYAT++V E
Sbjct: 510 SANQLRDRSAWFFAEDGKTRVSDIKTWMGKFKDKNVAKCAARMGLCFSSTYATVDVMPHE 569
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTN-PPCAYQIRFAGCKGVIACWP 2079
+ +VPDIERNGY FSDGIG +TPDLA EV KL+L + PCAYQIR+AG KGV+A WP
Sbjct: 570 VDTEVPDIERNGYVFSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWP 629
Query: 2080 GKDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQD 2259
K DGIRL+LR SM KF S HT+LEI SWTRFQPGFLNRQI+TLLS L VPD +F MQ+
Sbjct: 630 SKSDGIRLALRDSMKKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQE 689
Query: 2260 SMVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLG 2439
SM+ +LN +L++ DVAF+++T+SCAEQGNTAA+MLSAGF+P++EPHLRGML S+R AQL
Sbjct: 690 SMLYKLNRILDDTDVAFEVLTASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLW 749
Query: 2440 DLLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQV 2619
L K+RIFV+ GRWLMGCLDE G+LEHGQCFIQ S PS+ENCFS+HG +F E K + +V
Sbjct: 750 GLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEV 809
Query: 2620 IKGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLY 2799
+KG V IAKNPCLHPGD+R+LEAVD P L H+ DCL+FPQKGDRPHTNEASGSDLDGDLY
Sbjct: 810 VKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLY 869
Query: 2800 FVTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVV 2979
FV WD+ L+PP++KS+P M YD+ E K L R VN QDIIDFF +N+ NE++GTICNAHVV
Sbjct: 870 FVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVV 929
Query: 2980 HADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSN 3159
HAD SEYGA+DE+C+ LAELAATAVDF KTGK+VSMP LKPKLYPDFM KE +QTYKSN
Sbjct: 930 HADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSN 989
Query: 3160 KILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQL 3339
KILGRLYR++K+ D D + S+ S P I YD VLEIPG D I +AW KC YDGQL
Sbjct: 990 KILGRLYRRVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQL 1049
Query: 3340 MALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDS 3519
+ LLGQYKV EEE+VTGHIWSMPKY S+KQG++KE++KHSY++L +EF+ +FE D
Sbjct: 1050 IGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDH 1109
Query: 3520 LKLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELRDPDGDGAPAMLSFAWIPAEYLVRI 3699
L+E+EK +LYE+KASAWY VTYHP+WVKKSLEL+DPD AMLSFAWI A+YL RI
Sbjct: 1110 ENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARI 1169
Query: 3700 KVRHRRTENLDARKPINSLARYLAQRI 3780
K+R R ++D+ KP++SLA++LAQR+
Sbjct: 1170 KIRSREMGSIDSAKPVDSLAKFLAQRL 1196
Score = 383 bits (983), Expect = e-103
Identities = 178/315 (56%), Positives = 240/315 (76%)
Frame = +3
Query: 234 GTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLM 413
G+E K V+TQVS GGF + +AK+LTD+LE+E+G++WRCRLK SWTPP SYPNF++
Sbjct: 2 GSEGNMKKSVVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEIA 61
Query: 414 NTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHIN 593
+T+NI D+Y+KVEPHAFVHFA E+A RA++ AG C LIL+ PL+VSLGP+N + +N
Sbjct: 62 DTSNIPSIDEYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLN 121
Query: 594 QKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFS 773
Q+RRTT P+K + + +E+GTLVSRD+F V W+ GV+F+VDPFD+TCK F K TAFS
Sbjct: 122 QRRRTTVPYKLAGITLEIGTLVSRDDFFVSWR--AEGVDFLVDPFDNTCKFCFRKSTAFS 179
Query: 774 FKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSV 953
FK HAVI CD+KLE LVR+I ++QY+ + +++LQLASSP ++YRTADDDIYD+V
Sbjct: 180 FKDAVMHAVINCDYKLELLVRDIQTVRQYKTLHGFVLILQLASSPRVWYRTADDDIYDTV 239
Query: 954 PFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRP 1133
P DLLDD+DPWIRT DFT GAIGRC+SYR+ +SPR+ KL ++ Y + R+ + R
Sbjct: 240 PGDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRW 299
Query: 1134 KLTVQDEPDYGMPMS 1178
+++EP +G P+S
Sbjct: 300 PPRIRNEPCFGEPVS 314
>ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Cicer
arietinum] gi|502132369|ref|XP_004501326.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X3 [Cicer
arietinum]
Length = 1201
Score = 1241 bits (3212), Expect = 0.0
Identities = 606/873 (69%), Positives = 715/873 (81%), Gaps = 7/873 (0%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
++F++NA++HKG+ NQ+ LS FFELLRSQ ++VN+AAL+H+CSY+ PVFDA KRLK VQ
Sbjct: 332 IMFLINAIVHKGIFNQYSLSYKFFELLRSQPKDVNVAALKHLCSYKRPVFDAAKRLKTVQ 391
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
EWLL+NPKL + S D EVRRLVITPTKAYC+ PEVELSNRVLR++++V+DRFLRVT
Sbjct: 392 EWLLRNPKLYEISKQFDDIMEVRRLVITPTKAYCIAPEVELSNRVLRRFREVSDRFLRVT 451
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEGMQ LN H L YYVAPIV++ITSN FPQKT ++KRVKTI+ GFY CGRKYSFLAF
Sbjct: 452 FMDEGMQTLNVHALNYYVAPIVKEITSNSFPQKTRIYKRVKTILEEGFYFCGRKYSFLAF 511
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
SSNQL+DRSAWFFAED+ IT +I++WMGKF RN+AKC ARMG CFSSTYA++ V + E
Sbjct: 512 SSNQLRDRSAWFFAEDNNITCDDIRNWMGKFNQRNVAKCAARMGQCFSSTYASVEVAANE 571
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
N + D+ERN Y FSDGIG++T DLA+EVA KL+L P AYQIR+AG KGV+ACWP
Sbjct: 572 VNSMLADVERNNYVFSDGIGIITNDLAVEVAEKLKL-DKVPSAYQIRYAGFKGVVACWPP 630
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
K DGIRLSLR SMNKF S HT LEI +WTRFQPGFLNRQI+TLLSAL+V D +F MQ+
Sbjct: 631 KGDGIRLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSALDVSDGIFWDMQEV 690
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
M+ RLN+ML + DVAFD++T SCAE GN AA+MLS GF P++EPHLRGML SIRAAQL
Sbjct: 691 MISRLNQMLVDADVAFDVLTKSCAEHGNAAAIMLSCGFSPKTEPHLRGMLNSIRAAQLWG 750
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L K+RIFVS GRWLMG LDELGVLE GQCF+Q STPSLENCFS+HG +FSE K QV+
Sbjct: 751 LREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETK-TLQVV 809
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KGLVVIAKNPCLHPGD+RVLEAVD P L HL DCLVFPQKG+RPHTNEASGSDLDGDLYF
Sbjct: 810 KGLVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYF 869
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTWD NL+PPSK+SW PM+Y + E+K TR V +DIIDFF KNMVNE +G+ICNAHVVH
Sbjct: 870 VTWDGNLIPPSKRSWTPMEYAAQESKLHTRQVTIRDIIDFFVKNMVNEHLGSICNAHVVH 929
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
AD S+YGALDEKCI LAELAATAVDF KTGK+V+MP LKPKLYPDFM KE Q+YKS K
Sbjct: 930 ADCSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEHHQSYKSKK 989
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
ILGRLYR+IKD D DI +P ++CA DI YDT LE+PGSADFI DAW QKC+YDGQL
Sbjct: 990 ILGRLYRQIKDAYDKDIDAPD-LNCASSDIHYDTDLEVPGSADFISDAWYQKCSYDGQLS 1048
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
LLGQYKV TEEE+VTG IWSMPKYNSRKQG++KE++KHSY AL +EF+ FE + D
Sbjct: 1049 GLLGQYKVKTEEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQTFEKLNLDIG 1108
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELR-------DPDGDGAPAMLSFAWIPA 3681
+L+++EK +LYEQKASAWYQV YHP+WVK+S +L+ + D G MLSF WI
Sbjct: 1109 ELSDEEKNLLYEQKASAWYQVAYHPKWVKRSHDLKVKSSDNQEADSLGNMVMLSFPWIAV 1168
Query: 3682 EYLVRIKVRHRRTENLDARKPINSLARYLAQRI 3780
+YL R K+R RR EN D+ KP++SLA+YL++R+
Sbjct: 1169 DYLARTKIRRRRVENFDSVKPVDSLAKYLSERL 1201
Score = 389 bits (999), Expect = e-105
Identities = 186/313 (59%), Positives = 235/313 (75%)
Frame = +3
Query: 240 ENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPNFDLMNT 419
E + D V+TQVS GGFD + A +L FLE+ IG + RCRLK S TPPESYP F++ NT
Sbjct: 4 EESETDSVMTQVSIGGFDNEVKAYDLVSFLESRIGYVDRCRLKTSCTPPESYPEFNITNT 63
Query: 420 ANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENSFHINQK 599
A I+ TDDY+KV PHAFVHF E+AT ALN +G C+L L+ PL V GP+N +N++
Sbjct: 64 AQIETTDDYKKVAPHAFVHFTLQESATEALNASGQCDLFLHNQPLTVLCGPQNPNFLNRR 123
Query: 600 RRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKETAFSFK 779
RRT PFK S+V VE+GTLVS +EF+V W+GP G+NF+VDPFDS CK+ F ++TAFSFK
Sbjct: 124 RRTATPFKMSDVIVEIGTLVSPEEFVVAWRGPDKGLNFLVDPFDSMCKLCFNRDTAFSFK 183
Query: 780 GTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDIYDSVPF 959
G K VIKCDFK+ FLVR+I +IK+Y S L++LL LASSPL++YRTADDDI +SV
Sbjct: 184 GIAKTTVIKCDFKVGFLVRDIEEIKRYDDTSHLVVLLHLASSPLVWYRTADDDIEESVTI 243
Query: 960 DLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPNDCPRPKL 1139
DLLDD+DPWIRT DFTP GAIGRCN YRIS+ PR+G KL K+M+YL+ R+ + L
Sbjct: 244 DLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRYGAKLNKAMEYLRCQRVQRVPLKRPL 303
Query: 1140 TVQDEPDYGMPMS 1178
+ +EPD+G+PMS
Sbjct: 304 RILNEPDFGVPMS 316
>ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Cicer
arietinum]
Length = 1247
Score = 1241 bits (3212), Expect = 0.0
Identities = 606/873 (69%), Positives = 715/873 (81%), Gaps = 7/873 (0%)
Frame = +1
Query: 1183 VIFMVNAVMHKGVINQHQLSDMFFELLRSQKREVNIAALRHICSYRHPVFDACKRLKQVQ 1362
++F++NA++HKG+ NQ+ LS FFELLRSQ ++VN+AAL+H+CSY+ PVFDA KRLK VQ
Sbjct: 378 IMFLINAIVHKGIFNQYSLSYKFFELLRSQPKDVNVAALKHLCSYKRPVFDAAKRLKTVQ 437
Query: 1363 EWLLKNPKLLKNSWNSDYNAEVRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVT 1542
EWLL+NPKL + S D EVRRLVITPTKAYC+ PEVELSNRVLR++++V+DRFLRVT
Sbjct: 438 EWLLRNPKLYEISKQFDDIMEVRRLVITPTKAYCIAPEVELSNRVLRRFREVSDRFLRVT 497
Query: 1543 FMDEGMQQLNSHVLTYYVAPIVRDITSNGFPQKTCVFKRVKTIMSCGFYLCGRKYSFLAF 1722
FMDEGMQ LN H L YYVAPIV++ITSN FPQKT ++KRVKTI+ GFY CGRKYSFLAF
Sbjct: 498 FMDEGMQTLNVHALNYYVAPIVKEITSNSFPQKTRIYKRVKTILEEGFYFCGRKYSFLAF 557
Query: 1723 SSNQLKDRSAWFFAEDSKITVLNIKHWMGKFMDRNIAKCTARMGLCFSSTYATINVPSEE 1902
SSNQL+DRSAWFFAED+ IT +I++WMGKF RN+AKC ARMG CFSSTYA++ V + E
Sbjct: 558 SSNQLRDRSAWFFAEDNNITCDDIRNWMGKFNQRNVAKCAARMGQCFSSTYASVEVAANE 617
Query: 1903 FNLDVPDIERNGYEFSDGIGMMTPDLAMEVANKLQLTTNPPCAYQIRFAGCKGVIACWPG 2082
N + D+ERN Y FSDGIG++T DLA+EVA KL+L P AYQIR+AG KGV+ACWP
Sbjct: 618 VNSMLADVERNNYVFSDGIGIITNDLAVEVAEKLKL-DKVPSAYQIRYAGFKGVVACWPP 676
Query: 2083 KDDGIRLSLRRSMNKFISDHTVLEISSWTRFQPGFLNRQIMTLLSALEVPDNVFSKMQDS 2262
K DGIRLSLR SMNKF S HT LEI +WTRFQPGFLNRQI+TLLSAL+V D +F MQ+
Sbjct: 677 KGDGIRLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSALDVSDGIFWDMQEV 736
Query: 2263 MVCRLNEMLENPDVAFDIITSSCAEQGNTAAMMLSAGFEPQSEPHLRGMLYSIRAAQLGD 2442
M+ RLN+ML + DVAFD++T SCAE GN AA+MLS GF P++EPHLRGML SIRAAQL
Sbjct: 737 MISRLNQMLVDADVAFDVLTKSCAEHGNAAAIMLSCGFSPKTEPHLRGMLNSIRAAQLWG 796
Query: 2443 LLAKARIFVSQGRWLMGCLDELGVLEHGQCFIQASTPSLENCFSRHGPKFSEAKRNTQVI 2622
L K+RIFVS GRWLMG LDELGVLE GQCF+Q STPSLENCFS+HG +FSE K QV+
Sbjct: 797 LREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETK-TLQVV 855
Query: 2623 KGLVVIAKNPCLHPGDIRVLEAVDAPGLCHLVDCLVFPQKGDRPHTNEASGSDLDGDLYF 2802
KGLVVIAKNPCLHPGD+RVLEAVD P L HL DCLVFPQKG+RPHTNEASGSDLDGDLYF
Sbjct: 856 KGLVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYF 915
Query: 2803 VTWDENLLPPSKKSWPPMDYDSCEAKKLTRPVNTQDIIDFFTKNMVNEKVGTICNAHVVH 2982
VTWD NL+PPSK+SW PM+Y + E+K TR V +DIIDFF KNMVNE +G+ICNAHVVH
Sbjct: 916 VTWDGNLIPPSKRSWTPMEYAAQESKLHTRQVTIRDIIDFFVKNMVNEHLGSICNAHVVH 975
Query: 2983 ADLSEYGALDEKCIQLAELAATAVDFAKTGKVVSMPQSLKPKLYPDFMEKEPFQTYKSNK 3162
AD S+YGALDEKCI LAELAATAVDF KTGK+V+MP LKPKLYPDFM KE Q+YKS K
Sbjct: 976 ADCSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEHHQSYKSKK 1035
Query: 3163 ILGRLYRKIKDGTDGDILSPSKISCAPEDITYDTVLEIPGSADFIDDAWNQKCAYDGQLM 3342
ILGRLYR+IKD D DI +P ++CA DI YDT LE+PGSADFI DAW QKC+YDGQL
Sbjct: 1036 ILGRLYRQIKDAYDKDIDAPD-LNCASSDIHYDTDLEVPGSADFISDAWYQKCSYDGQLS 1094
Query: 3343 ALLGQYKVSTEEEMVTGHIWSMPKYNSRKQGDMKEKIKHSYHALNREFKNLFENVGQDSL 3522
LLGQYKV TEEE+VTG IWSMPKYNSRKQG++KE++KHSY AL +EF+ FE + D
Sbjct: 1095 GLLGQYKVKTEEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQTFEKLNLDIG 1154
Query: 3523 KLTEDEKIVLYEQKASAWYQVTYHPQWVKKSLELR-------DPDGDGAPAMLSFAWIPA 3681
+L+++EK +LYEQKASAWYQV YHP+WVK+S +L+ + D G MLSF WI
Sbjct: 1155 ELSDEEKNLLYEQKASAWYQVAYHPKWVKRSHDLKVKSSDNQEADSLGNMVMLSFPWIAV 1214
Query: 3682 EYLVRIKVRHRRTENLDARKPINSLARYLAQRI 3780
+YL R K+R RR EN D+ KP++SLA+YL++R+
Sbjct: 1215 DYLARTKIRRRRVENFDSVKPVDSLAKYLSERL 1247
Score = 391 bits (1005), Expect = e-105
Identities = 187/319 (58%), Positives = 238/319 (74%)
Frame = +3
Query: 222 MGSFGTENEKKDMVITQVSFGGFDKHISAKELTDFLENEIGVIWRCRLKNSWTPPESYPN 401
+G+ E + D V+TQVS GGFD + A +L FLE+ IG + RCRLK S TPPESYP
Sbjct: 44 IGNMDLEESETDSVMTQVSIGGFDNEVKAYDLVSFLESRIGYVDRCRLKTSCTPPESYPE 103
Query: 402 FDLMNTANIQVTDDYEKVEPHAFVHFASPEAATRALNVAGCCELILNRNPLRVSLGPENS 581
F++ NTA I+ TDDY+KV PHAFVHF E+AT ALN +G C+L L+ PL V GP+N
Sbjct: 104 FNITNTAQIETTDDYKKVAPHAFVHFTLQESATEALNASGQCDLFLHNQPLTVLCGPQNP 163
Query: 582 FHINQKRRTTDPFKFSNVHVELGTLVSRDEFLVGWKGPTSGVNFVVDPFDSTCKIFFTKE 761
+N++RRT PFK S+V VE+GTLVS +EF+V W+GP G+NF+VDPFDS CK+ F ++
Sbjct: 164 NFLNRRRRTATPFKMSDVIVEIGTLVSPEEFVVAWRGPDKGLNFLVDPFDSMCKLCFNRD 223
Query: 762 TAFSFKGTTKHAVIKCDFKLEFLVREITDIKQYRGISKLIMLLQLASSPLLFYRTADDDI 941
TAFSFKG K VIKCDFK+ FLVR+I +IK+Y S L++LL LASSPL++YRTADDDI
Sbjct: 224 TAFSFKGIAKTTVIKCDFKVGFLVRDIEEIKRYDDTSHLVVLLHLASSPLVWYRTADDDI 283
Query: 942 YDSVPFDLLDDEDPWIRTFDFTPGGAIGRCNSYRISMSPRFGPKLEKSMKYLKEWRIPND 1121
+SV DLLDD+DPWIRT DFTP GAIGRCN YRIS+ PR+G KL K+M+YL+ R+
Sbjct: 284 EESVTIDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRYGAKLNKAMEYLRCQRVQRV 343
Query: 1122 CPRPKLTVQDEPDYGMPMS 1178
+ L + +EPD+G+PMS
Sbjct: 344 PLKRPLRILNEPDFGVPMS 362