BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00012630
         (1599 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   737   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   736   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   733   0.0  
gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tu...   722   0.0  
gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum de...   720   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   719   0.0  
gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum de...   719   0.0  
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   718   0.0  
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   718   0.0  
gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tu...   718   0.0  
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...   717   0.0  
gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum de...   717   0.0  
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   716   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   716   0.0  
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   714   0.0  
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   713   0.0  
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola...   713   0.0  
gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tu...   713   0.0  
gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solan...   713   0.0  
gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]   711   0.0  

>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  737 bits (1902), Expect = 0.0
 Identities = 380/533 (71%), Positives = 441/533 (82%), Gaps = 1/533 (0%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            VGPPQG  LP+ ILFKIN+LVQNG L+GPTLD  FFR V P  I NI+ IE ALEKL + 
Sbjct: 260  VGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFRWVDPQRI-NISFIEHALEKLYYL 318

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            +E CYEPV+WL EQY+ Y+ SK    SP+ISLD GLVY RRVQ+TP KVY+CGPE+NVSN
Sbjct: 319  EECCYEPVRWLHEQYRTYI-SKQVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSN 377

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSF+DE+ EK+ S  +SPR S ++G+R T +Y+RILS L+NGIVI
Sbjct: 378  RVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPRMS-NEGRR-TGVYRRILSILQNGIVI 435

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKF+FLA SSSQLRDNS WMFA    +TAA+IR  MGDF +IRNVAKY+ARLGQSFSS
Sbjct: 436  GDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSS 495

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L V KHEIE IPD+E  ++G  YVFSDGIGKISA+ A RVA KCG ++STPSAFQI
Sbjct: 496  SKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQI 555

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDPTS  KLSLRKSM KY S+NT+LDVL+WSK++PCFLNRQLITLLSTLG
Sbjct: 556  RYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLG 615

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            VKDH+FEKKQ+EAVDQLD IL DPLRAQEALE+MS GE  ++LKEML CGYKPD EPFLS
Sbjct: 616  VKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLS 675

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNK-LFGNNA 162
            MMLQTFRA+KLL+LR KTRIF+  GRSMMGCLDET TLEYG+VFVQ+S  G +  FG++ 
Sbjct: 676  MMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSL 735

Query: 161  LSTSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
            +    G+ S+  + I+E KV VAKNPCLHPGDVRIL AV+VPAL HMVDCVVF
Sbjct: 736  M--FYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVF 786


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  736 bits (1901), Expect = 0.0
 Identities = 380/533 (71%), Positives = 434/533 (81%), Gaps = 1/533 (0%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            +GPPQG  LP+ ILFKIN+LVQNG L+GPTLD +FFRLV P   P I+ IE ALEKL H 
Sbjct: 262  LGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLVDPERFP-ISFIEHALEKLYHL 320

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CYEPV+WLSEQY+ Y+  K    SP+ISLD GLVY RRVQ+TP KVY+CGPE+NVSN
Sbjct: 321  KECCYEPVRWLSEQYRTYV-KKPVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSN 379

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSF+DE+ EK+ S  +SPR S  +G+R T +Y+RILS L+NGIVI
Sbjct: 380  RVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMS-KEGRR-TGVYRRILSILQNGIVI 437

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKF+FLAFSSSQLRDNS WMFA    +TAA IR WMGDF +IRNVAKY+ARLGQSFSS
Sbjct: 438  GDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSS 497

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L V K EIE IPD+EI K    YVFSDGIGKIS + A RVA KCG +SSTPSAFQI
Sbjct: 498  SKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQI 557

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDPTS  KLSLRKSM KY S NT+LDVL WSK+QP FLNRQLITLLSTLG
Sbjct: 558  RYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLG 617

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            VKDH+FEKKQ+ AVDQLD IL DP+ AQEALE+MS GE  +VLKEML CGYKPD EPFLS
Sbjct: 618  VKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLS 677

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNK-LFGNNA 162
            MMLQTFRA+KLL+LR KTRIF+  GRSMMGCLDET TLEYG+VFVQ+S  G +  FG++ 
Sbjct: 678  MMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSL 737

Query: 161  LSTSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
            +   RG+ S+  + I+E K+ VAKNPCLHPGDVR+L AVNVP L HMVDCVVF
Sbjct: 738  M--FRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVF 788


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  733 bits (1893), Expect = 0.0
 Identities = 372/535 (69%), Positives = 438/535 (81%), Gaps = 3/535 (0%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIP-NITHIERALEKLSH 1422
            VGPP G+ LPY ILFKIN LVQNG +AGP LD+ F+RLV P   P +I+ IE AL+KL H
Sbjct: 272  VGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH 331

Query: 1421 SKESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVS 1242
             KE CYEP +WL++QY+KY+TS+  P SP+ISLDDGLVY  RVQVTPS+VY+CGPEINVS
Sbjct: 332  LKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVS 391

Query: 1241 NRVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIV 1062
            NRVLR +   IDNF+R+SF+DED +K+ S DLSPR S++     T IY RILSTL+NGI+
Sbjct: 392  NRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGIL 451

Query: 1061 IGDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFS 882
            IGD+KFEFLAFSSSQLR++S WMFA    +TAA IREWMG+F EIRNVAKY+ARLGQSFS
Sbjct: 452  IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 511

Query: 881  SSMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQ 702
            SS ++L+V+  EIE IPDV+IE    KYVFSDGIGK+SA+FA++VA+KCG++ + PSAFQ
Sbjct: 512  SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQ 571

Query: 701  IRYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTL 522
            IRYGGYKGVVA DPTS  KLSLR SM KY S+ T LDVL WSK+QPCFLNRQLI+LLSTL
Sbjct: 572  IRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTL 631

Query: 521  GVKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFL 342
            G+ D IFEKKQ+EAV QLD ILTDPL+AQEALE+MS GE  ++LKE+L CGYKPD EPFL
Sbjct: 632  GIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFL 691

Query: 341  SMMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVG-NKLFGNN 165
            SMMLQTFRASKLL+LR KTRIF+  GRSMMGCLDET TL YGQVFVQ+S  G  +L G +
Sbjct: 692  SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES 751

Query: 164  AL-STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
            +L S+SR  +      IV+  V VAKNPCLHPGDVR+L+AVNVPAL HMVDCVVF
Sbjct: 752  SLFSSSRSRQ----RFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 802


>gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
          Length = 1050

 Score =  722 bits (1863), Expect = 0.0
 Identities = 370/532 (69%), Positives = 431/532 (81%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            V PP+G+ +PY ILFKI+SLVQ+G + GP+L+  FFRLV P    N+  IE+ALEKL + 
Sbjct: 108  VQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQR-RNVACIEQALEKLYYL 166

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CY+PV+WL+EQY  YL  +  PKSPSI+LDDGLVY RRV VTP KVY+CGPE+NVSN
Sbjct: 167  KECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 226

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSFVDE+WEK+ S +L P+AST  G R TNIY+RILSTL+ G VI
Sbjct: 227  RVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVI 285

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKFEFLAFSSSQLRDNSVWMFA    +TA +IR WMGDF +I+NVAKY+ARLGQSF S
Sbjct: 286  GDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGS 345

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V +HEIE IPDV++  +G  YVFSDGIGKISA FA+RVA+KCG+Q  TPSAFQI
Sbjct: 346  STETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQI 402

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDP S  KLSLRKSMSKY S N  LDVL WSK+QPCFLNRQLITLLSTLG
Sbjct: 403  RYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCFLNRQLITLLSTLG 462

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            VKD I E+KQKEAVDQLD IL D L+AQEALE+MS GE  ++LK ML CGY PD EPFLS
Sbjct: 463  VKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLS 522

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLLDLR K+RIF+  GR+MMGCLDE+ TLEYGQVFVQ +  G++ F  + L
Sbjct: 523  MMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSED-L 581

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
                 + S   + I++  V VAKNPCLHPGD+R+L+AVNVPAL HMVDCVVF
Sbjct: 582  HPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVNVPALHHMVDCVVF 633


>gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1180

 Score =  720 bits (1858), Expect = 0.0
 Identities = 367/532 (68%), Positives = 430/532 (80%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            V PP+G+ +PY ILFKI+SLVQ+G + GP LD  FFRLV P    N+  IE+ALEKL + 
Sbjct: 226  VQPPEGIAIPYKILFKISSLVQHGCIPGPALDVYFFRLVDPQR-RNVACIEQALEKLYYL 284

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CY+PV+WL+EQY  YL  +  PKSPSI+LDDGLVY RRV VTP KVY+CGPE+NVSN
Sbjct: 285  KECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 344

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSFVDE+WEK+ S DL P+AST  G R TNIY+RILSTL+ G VI
Sbjct: 345  RVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYERILSTLRKGFVI 403

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKFEFLAFSSSQLRDNSVWMFA    +TA +IR WMGDF +I+NVAKY+ARLGQSF S
Sbjct: 404  GDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGS 463

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V +HEIE IPDV++  +G  YVFSDGIGKISA FA+RVA+KCG+Q  TPSAFQI
Sbjct: 464  SKETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQI 520

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDP S  KLSLRKSMSKY S N  LDVL WSK+QPC+LNRQL+TLLSTLG
Sbjct: 521  RYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLG 580

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            VKD + E+KQKEAVDQLD IL D L+AQEALE+MS GE  ++LK ML CGY PD EPFLS
Sbjct: 581  VKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLS 640

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLLDLR ++RIF+  GR+MMGCLDE+ TLEYGQVFVQ +  G++ F  + L
Sbjct: 641  MMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSED-L 699

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
                 + S   + I++  V VAKNPCLHPGD+R+L+AV+VPAL HMVDCVVF
Sbjct: 700  HPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVF 751


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  719 bits (1857), Expect = 0.0
 Identities = 366/533 (68%), Positives = 431/533 (80%), Gaps = 1/533 (0%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            VGP  G+ LPYNILF++N LVQNG LAG  LD  F+RLV P+ +P +  IE ALEKL H 
Sbjct: 270  VGPSSGVNLPYNILFRVNLLVQNGCLAGSMLDDIFYRLVDPNRMP-VRCIEYALEKLYHL 328

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CYEP KW +EQYKKYLTS + P+SP +SLD GLVY  +VQ+TP KV++CGPE+NVSN
Sbjct: 329  KECCYEPSKWFNEQYKKYLTSGNPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSN 388

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR+Y E IDNF+RVSFVDE+ EK+ S D+SPR S+    R T IY RILSTL+NGIVI
Sbjct: 389  RVLRQYREDIDNFLRVSFVDEELEKIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVI 448

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKFEFLAFSSSQLR+NS WMFA    +TAA+IR WMG F +IRNVA+Y+ARLGQSF S
Sbjct: 449  GDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGS 508

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V+ HEIE IPD+E+ + G +Y+FSDGIGKISA+FA++VA KCG +  TPSAFQI
Sbjct: 509  STETLSVSSHEIEIIPDIEVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQI 568

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RY GYKGVVAVDPTS  KLSLR+SM KY S+NT LDVL  SK+QPCFLNRQLITLLSTLG
Sbjct: 569  RYAGYKGVVAVDPTSSKKLSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLG 628

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            V DH FE+KQ+EAVDQLD +LTDPLRAQEALE+MS GE  ++LKEML CGY+PD EPFLS
Sbjct: 629  VPDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLS 688

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLL+LR KTRIF+  GRSMMGCLDET TLE+GQVFV+ S      F N   
Sbjct: 689  MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFS---GSRFRNLYD 745

Query: 158  STSRGNESNQGS-LIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
            S+   +E  +G   +++  V VAKNPCLHPGD+RIL+AV+VPAL HMVDCVVF
Sbjct: 746  SSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVF 798


>gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1139

 Score =  719 bits (1856), Expect = 0.0
 Identities = 367/532 (68%), Positives = 429/532 (80%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            V PP+G+ +PY ILFKI+SLVQ+G + GP LD  FFRLV P    N+  IE+ALEKL + 
Sbjct: 252  VQPPEGIAIPYKILFKISSLVQHGCIPGPALDVYFFRLVDPQR-RNVACIEQALEKLYYL 310

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CY+PV+WL+EQY  YL  +  PKSPSI+LDDGLVY RRV VTP KVY+CGPE+NVSN
Sbjct: 311  KECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 370

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSFVDE+WEK+ S DL P+AST  G R TNIY+RILSTL+ G VI
Sbjct: 371  RVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYERILSTLRKGFVI 429

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKFEFLAFSSSQLRDNSVWMFA    +TA +IR WMGDF +I+NVAKY+ARLGQSF S
Sbjct: 430  GDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGS 489

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V +HEIE IPDV++  +G  YVFSDGIGKISA FA+RVA+KCG+Q  TPSAFQI
Sbjct: 490  SKETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQI 546

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDP S  KLSLRKSMSKY S N  LDVL WSK+QPC+LNRQL+TLLSTLG
Sbjct: 547  RYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLG 606

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            VKD + E+KQKEAVDQLD IL D L+AQEALE+MS GE   +LK ML CGY PD EPFLS
Sbjct: 607  VKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTTILKAMLNCGYMPDAEPFLS 666

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLLDLR ++RIF+  GR+MMGCLDE+ TLEYGQVFVQ +  G++ F  + L
Sbjct: 667  MMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSED-L 725

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
                 + S   + I++  V VAKNPCLHPGD+R+L+AV+VPAL HMVDCVVF
Sbjct: 726  HPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVF 777


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score =  718 bits (1853), Expect = 0.0
 Identities = 367/532 (68%), Positives = 429/532 (80%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            V PP+G+ +PY ILFKI+SLVQ+G + GP L+  FFRLV P    N+  IE+ALEKL + 
Sbjct: 260  VQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQR-RNVACIEQALEKLYYL 318

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CY+PV+WL+EQY  YL  +  PKSPSI+LDDGLVY RRV VTP KVY+CGPE+NVSN
Sbjct: 319  KECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 378

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSFVDE+WEK+ S DL P+AST  G R TNIY+RILSTL+ G VI
Sbjct: 379  RVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYERILSTLRKGFVI 437

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKFEFLAFSSSQLRDNSVWMFA    +TA +IR WMGDF +I+NVAKY+ARLGQSF S
Sbjct: 438  GDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGS 497

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V +HEIE IPDV++  +G  YVFSDGIGKISA FA+RVA+KCG+Q  TPSAFQI
Sbjct: 498  STETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQH-TPSAFQI 554

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDP S  KLSLRKSMSKY S N  LDVL WSK+QPC+LNRQL+TLLSTLG
Sbjct: 555  RYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLG 614

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            VKD + E+KQKEAVDQLD IL D L+AQEALE+MS GE  ++LK ML CGY PD EPFLS
Sbjct: 615  VKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLS 674

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLLDLR K+RIF+  GR MMGCLDE+ TLEYGQVFVQ +  G++ F  + L
Sbjct: 675  MMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTLEYGQVFVQFTGSGHREFSED-L 733

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
                 + S   + I++  V VAKNPCLHPGD+R+L+AV+VPAL HMVDCVVF
Sbjct: 734  HPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVF 785


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  718 bits (1853), Expect = 0.0
 Identities = 367/532 (68%), Positives = 429/532 (80%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            V PP+G+ +PY ILFKI+SLVQ+G + GP L+  FFRLV P    N+  IE+ALEKL + 
Sbjct: 260  VQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFRLVDPQR-RNVACIEQALEKLYYL 318

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CY+PV+WL+EQY  YL  +  PKSPSI+LDDGLVY RRV VTP KVY+CGPE+NVSN
Sbjct: 319  KECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 378

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSFVDE+WEK+ S DL P+AST  G R TNIY RILSTL+ G VI
Sbjct: 379  RVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYVRILSTLQKGFVI 437

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKFEFLAFSSSQLRDNSVWMFA    +TA +IR WMGDF +I+NVAKY+ARLGQSF S
Sbjct: 438  GDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGS 497

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V +HEIE IPDV++  +G  YVFSDGIGKISA FA+RVA+KCG+Q  TPSAFQI
Sbjct: 498  SKETLSVLRHEIEIIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQI 554

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDP S  KLSLRKSMSKY S N  LDVL WSK+QPCFLNRQL+TLLSTLG
Sbjct: 555  RYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCFLNRQLVTLLSTLG 614

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            VKD + E+KQKEAVDQLD IL D L+AQEALE+MS GE  ++LK ML CGY PD EPFLS
Sbjct: 615  VKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLS 674

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLLDLR ++RIF+  GR+MMGCLDE+ TLEYGQVFVQ +  G++ F  + L
Sbjct: 675  MMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGSGHREFSED-L 733

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
                 + S   + I++  V VAKNPCLHPGD+R+L+AV+VPAL HMVDCVVF
Sbjct: 734  HPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVF 785


>gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 841

 Score =  718 bits (1853), Expect = 0.0
 Identities = 366/532 (68%), Positives = 430/532 (80%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            V PP+G+ +PY ILFKI+SLVQ+G + GP L+  FFRLV P    N+  IE+ALEKL + 
Sbjct: 260  VQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQR-RNVACIEQALEKLYYL 318

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CY+PV+WL+EQY  YL  +  PKSPSI+LDDGLVY RRV VTP KVY+CGPE+NVSN
Sbjct: 319  KECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 378

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSFVDE+WEK+ S DL P+AST  G R TNIY+RILSTL+ G VI
Sbjct: 379  RVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGIR-TNIYERILSTLRKGFVI 437

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKFEFLAFSSSQLRDNSVWMFA    +TA +IR WMGDF +I+NVAKY+ARLGQSF S
Sbjct: 438  GDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGS 497

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V +HEIE IPDV++  +G  YVFSDGIGKISA FA+RVA+KCG+Q  TPSAFQI
Sbjct: 498  SKETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQI 554

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDP S  KLSLRKSMSKY S N  LDVL WSK+QPC+LNRQL+TLLSTLG
Sbjct: 555  RYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLG 614

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            VKD + E+KQKEAVDQLD IL D L+AQEALE+MS GE  ++LK ML CGY PD EPFLS
Sbjct: 615  VKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLS 674

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLLDLR ++RIF+  GR+MMGCLDE+ TLEYGQVFVQ +  G++ F  + L
Sbjct: 675  MMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSED-L 733

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
                 + S   + I++  V VAKNPCLHPGD+R+L+AV+VPAL HMVDCVVF
Sbjct: 734  HPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVF 785


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  717 bits (1852), Expect = 0.0
 Identities = 367/532 (68%), Positives = 431/532 (81%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            V PP+G+ +PY ILFKI+SLVQ+G + GP+L+  FFRLV P    N+  IE+ALEKL + 
Sbjct: 259  VQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQR-RNVACIEQALEKLYYL 317

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CY+PV+WL+EQY  YL  +  PKSPSI+LDDGLVY RRV VTP KVY+CGPE+NVSN
Sbjct: 318  KECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 377

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSFVDE+WEK+ S +L P+AST  G R TNIY+RILST++ G VI
Sbjct: 378  RVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTMQKGFVI 436

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKFEFLAFSSSQLRDNSVWMFA    +TA +IR WMGDF +I+NVAKY+ARLGQSF S
Sbjct: 437  GDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGS 496

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V +HEIE IPDV++  +G  YVFSDGIGKISA FA+RVA+KCG+Q  TPSAFQI
Sbjct: 497  SKETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQI 553

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDP S  KLSLRKSMSKY S N  LDVL WSK+QPC+LNRQLITLLSTLG
Sbjct: 554  RYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLITLLSTLG 613

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            VKD I E+KQKEAVDQLD IL D L+AQEALE+MS GE  ++LK ML CGY PD EPFLS
Sbjct: 614  VKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLS 673

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLLDLR K+RIF+  GR+MMGCLDE+ TLEYGQVFVQ +  G++ F  + L
Sbjct: 674  MMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSED-L 732

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
                 + S   + I++  V VAKNPCLHPGD+R+L+AV+VPAL HMVDCVVF
Sbjct: 733  HPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVF 784


>gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1021

 Score =  717 bits (1852), Expect = 0.0
 Identities = 367/532 (68%), Positives = 431/532 (81%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            V PP+G+ +PY ILFKI+SLVQ+G + GP+L+  FFRLV P    N+  IE+ALEKL + 
Sbjct: 108  VQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFRLVDPQR-RNVACIEQALEKLYYL 166

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CY+PV+WL+EQY  YL  +  PKSPSI+LDDGLVY RRV VTP KVY+CGPE+NVSN
Sbjct: 167  KECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 226

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSFVDE+WEK+ S +L P+AST  G R TNIY+RILSTL+ G VI
Sbjct: 227  RVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVI 285

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKFEFLAFSSSQLRDNSVWMFA    +TA +IR WMGDF +I+NVAKY+ARLGQSF S
Sbjct: 286  GDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGS 345

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V +HEIE IPDV++  +G  YVFSDGIGKISA FA+RVA+KCG+Q  TPSAFQI
Sbjct: 346  SKETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQI 402

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDP S  KL+LRKSMSKY S N  LDVL WSK+QPCFLNRQLITLLSTLG
Sbjct: 403  RYGGYKGVVAVDPYSSMKLTLRKSMSKYESDNNKLDVLGWSKYQPCFLNRQLITLLSTLG 462

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            V+D I E+KQKEAVDQLD IL D L+AQEALE+MS GE  ++LK ML CGY PD EPFLS
Sbjct: 463  VRDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLS 522

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLLDLR K+RIF+  GR+MMGCLDE+ TLEYGQVFVQ +  G++ F  + L
Sbjct: 523  MMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSED-L 581

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
                 + S   + I++  V VAKNPCLHPGD+R+L+AV+VPAL HMVDCVVF
Sbjct: 582  HPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVF 633


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  716 bits (1848), Expect = 0.0
 Identities = 366/532 (68%), Positives = 429/532 (80%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            V PP+G+ +PY ILFKI+SLVQ+G + GP L+  FFRLV P    N+  IE+ALEKL + 
Sbjct: 108  VQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQR-RNVACIEQALEKLYYL 166

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CY+PV+WL+EQY  YL  +  PKSPSI+LDDGLVY RRV VTP KVY+CGPE+NVSN
Sbjct: 167  KECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 226

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSFVDE+WEK+ S +L P+AST  G R TNIY+RILSTL+ G VI
Sbjct: 227  RVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVI 285

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKK EFLAFSSSQLRDNSVWMFA    +TA +IR WMGDF +I+NVAKY+ARLGQSF S
Sbjct: 286  GDKKIEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGS 345

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V +HEIE IPDV++  +G  YVFSDGIGKISA FA+RVA+KCG+Q  TPSAFQI
Sbjct: 346  SKETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQI 402

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDP S  KLSLRKSMSKY S N  LDVL WSK+QPC+LNRQLITLLSTLG
Sbjct: 403  RYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLITLLSTLG 462

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            VKD + E+KQKEAVDQLD IL D L+AQEALE+MS GE  ++LK ML CGY PD EPFLS
Sbjct: 463  VKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLS 522

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLLDLR K+RIF+  GR+MMGCLDE+ TLEYGQVFVQ +  G++ F  + L
Sbjct: 523  MMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSED-L 581

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
                 + S   + I++  V VAKNPCLHPGD+R+L+AV+VPAL HMVDCVVF
Sbjct: 582  HPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVF 633


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  716 bits (1848), Expect = 0.0
 Identities = 366/532 (68%), Positives = 426/532 (80%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            V PP+G+ +PY ILFKI+SLVQ+G + GP L+  FFRLV P    N+  IE ALEKL + 
Sbjct: 260  VQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPRR-RNVACIEHALEKLYYI 318

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CY+PV+WL+EQY  YL  +  PKSPSI+LDDGLVY RRV VTP KVY+CGPE+NVSN
Sbjct: 319  KECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 378

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSFVDE+WEK+ S DL P+AST  G R TNIY+RILSTL+ G VI
Sbjct: 379  RVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGSGVR-TNIYERILSTLRKGFVI 437

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKFEFLAFSSSQLRDNSVWMFA    +TA +IR WMGDF +I+NVAKY+ARLGQSF S
Sbjct: 438  GDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGS 497

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V +HEIE IPDV++  +G  YVFSDGIGKIS  FA RVA+KCG+Q  TPSAFQI
Sbjct: 498  SRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISGDFAHRVASKCGLQY-TPSAFQI 554

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVV VDP S  KLSLRKSMSKY S N  LDVL WSK+QPC+LNRQLITLLSTLG
Sbjct: 555  RYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLG 614

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            VKD + E+KQKEAVDQLD IL D L+AQEALE+MS GE  ++LK ML CGYKPD EPFLS
Sbjct: 615  VKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLS 674

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLLDLR ++RIF+  GR+MMGCLDE+ TLEYGQVFVQ +  G+  F ++ L
Sbjct: 675  MMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDD-L 733

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
                 + S   + I++  V VAKNPCLHPGD+R+L+AVNV AL HMVDCVVF
Sbjct: 734  HPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVF 785


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  714 bits (1844), Expect = 0.0
 Identities = 369/532 (69%), Positives = 425/532 (79%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            VGP  G++LPY ILFKIN LVQNG + GP LDA F+RLV+P  I  + +I+ ALEKL + 
Sbjct: 269  VGPSLGIDLPYEILFKINLLVQNGCIPGPALDANFYRLVNPCRIDKV-YIDHALEKLYYL 327

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE C+EP KWL EQYK Y+ SK NP SP ISLDDGLV  RRVQ+TPS+VY+CGPEINVSN
Sbjct: 328  KECCFEPSKWLLEQYKGYIASKKNPGSPVISLDDGLVNVRRVQITPSRVYFCGPEINVSN 387

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR +H+ IDNF+R++FVDE+ EK+ S DL  R       R T IY RILSTLKNGIVI
Sbjct: 388  RVLRHFHDDIDNFLRITFVDEELEKIHSTDLLTR------NRITEIYGRILSTLKNGIVI 441

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDK+FEFLAFSSSQLR+NS WMFA    +TAA+IR WMG+F +IRNVAKY+ARLGQSFSS
Sbjct: 442  GDKQFEFLAFSSSQLRENSAWMFASREGLTAADIRTWMGEFSKIRNVAKYAARLGQSFSS 501

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V K EIE I DVEI+++G  YVFSDGIGKISAKFA++VA KC +   TPSAFQI
Sbjct: 502  STETLSVAKDEIEIIDDVEIKRDGINYVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQI 561

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            R GG+KGVVAVDPTS  KLSLR SMSKY S+NT LDVL WSK+QPCFLNRQLITLLSTLG
Sbjct: 562  RIGGFKGVVAVDPTSSKKLSLRGSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLG 621

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            V DH FE+KQ+E VDQL+ ILTDPL+AQEALE+MS GE  ++LKEML CGY+PD EPFLS
Sbjct: 622  VPDHAFEEKQREVVDQLNAILTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLS 681

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLL+LR K+RIF++ GRSMMGCLDET TL+YGQVFVQVS            
Sbjct: 682  MMLQTFRASKLLELRTKSRIFVANGRSMMGCLDETRTLDYGQVFVQVS------------ 729

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
                G+ S Q   IV+ KV VAKNPCLHPGDVR+L AVNVP L HMVDCVVF
Sbjct: 730  ----GSRSEQ-RFIVQGKVVVAKNPCLHPGDVRVLTAVNVPDLHHMVDCVVF 776


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  713 bits (1841), Expect = 0.0
 Identities = 363/532 (68%), Positives = 428/532 (80%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            V PP+G+ +PY ILFKI+SLVQ+G + GP L+  FFRLV P    N+  IE+ALEKL + 
Sbjct: 260  VQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQR-RNVACIEQALEKLYYL 318

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CY+PV+WL+EQY  YL  +  PKSPSI+LDDGLVY RRV VTP KVY+CGPE+NVSN
Sbjct: 319  KECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 378

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSFVDE+WEK+ S +L P+AST  G R TNIY+RILSTL+ G VI
Sbjct: 379  RVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVI 437

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKFEFLAFSSSQLRDNSVWMFA    +T  +IR WMGDF +I+NVAKY+ARLGQSF S
Sbjct: 438  GDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGS 497

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V +HEIE IPDV++  +G  YVFSDGIGKISA FA+RVA+KCG+Q  TPSAFQI
Sbjct: 498  SRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQI 554

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDP S  KLSLRKSMSKY S N  LDVL WSK+QPC+LNRQL+TLLSTLG
Sbjct: 555  RYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLG 614

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            VKD + E+KQKEAV QLD IL D L+AQEALE+MS GE  ++LK ML CGY PD EPFLS
Sbjct: 615  VKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLS 674

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLLDLR ++RIF+  GR+MMGCLDE+ TLEYGQVFVQ +  G++ F  + L
Sbjct: 675  MMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSED-L 733

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
                 + S   + I++  V VAKNPCLHPGD+R+L+AV+VPAL HMVDCVVF
Sbjct: 734  HPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVF 785


>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  713 bits (1841), Expect = 0.0
 Identities = 363/532 (68%), Positives = 428/532 (80%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            V PP+G+ +PY ILFKI+SLVQ+G + GP L+  FFRLV P    N+  IE+ALEKL + 
Sbjct: 108  VQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQR-RNVACIEQALEKLYYL 166

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CY+PV+WL+EQY  YL  +  PKSPSI+LDDGLVY RRV VTP KVY+CGPE+NVSN
Sbjct: 167  KECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 226

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSFVDE+WEK+ S +L P+AST  G R TNIY+RILSTL+ G VI
Sbjct: 227  RVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVI 285

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKFEFLAFSSSQLRDNSVWMFA    +T  +IR WMGDF +I+NVAKY+ARLGQSF S
Sbjct: 286  GDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGS 345

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V +HEIE IPDV++  +G  YVFSDGIGKISA FA+RVA+KCG+Q  TPSAFQI
Sbjct: 346  SRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQI 402

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDP S  KLSLRKSMSKY S N  LDVL WSK+QPC+LNRQL+TLLSTLG
Sbjct: 403  RYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLG 462

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            VKD + E+KQKEAV QLD IL D L+AQEALE+MS GE  ++LK ML CGY PD EPFLS
Sbjct: 463  VKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLS 522

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLLDLR ++RIF+  GR+MMGCLDE+ TLEYGQVFVQ +  G++ F  + L
Sbjct: 523  MMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSED-L 581

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
                 + S   + I++  V VAKNPCLHPGD+R+L+AV+VPAL HMVDCVVF
Sbjct: 582  HPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVF 633


>gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 935

 Score =  713 bits (1840), Expect = 0.0
 Identities = 362/532 (68%), Positives = 427/532 (80%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            V PP+G+ +PY ILFKI+SLVQ+G + GP L+  FFRLV P    N+  IE+ALEKL + 
Sbjct: 260  VQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQR-RNVACIEQALEKLYYL 318

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CY+PV+WL+EQY  Y   +  PKSPSI+LDDGLVY RRV VTP KVY+CGPE+NVSN
Sbjct: 319  KECCYDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 378

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSFVDE+WEK+ S +L P+AST  G R TNIY+RILSTL+ G VI
Sbjct: 379  RVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVI 437

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKFEFLAFSSSQLRDNSVWMFA    +TA +IR WMGDF +I+NVAKY+AR GQSF S
Sbjct: 438  GDKKFEFLAFSSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGS 497

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V +HEIE IPDV++  +G  YVFSDGIGKISA FA++VA+ CG+Q  TPSAFQI
Sbjct: 498  SRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARKVASNCGLQY-TPSAFQI 554

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDP S  KLSLRKSMSKY S N  LDVL WSK+QPC+LNRQL+TLLSTLG
Sbjct: 555  RYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLG 614

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            VKD + E+KQKEAVDQLD IL D L+AQEALE+MS GE  ++LK ML CGY PD EPFLS
Sbjct: 615  VKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLS 674

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLLDLR K+RIF+  GR+MMGCLDE+ TLEYGQVFVQ +  G++ F  + L
Sbjct: 675  MMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSED-L 733

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
                 + S   + I++  V VAKNPCLHPGD+R+L+AV+VPAL HMVDCVVF
Sbjct: 734  HPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVF 785


>gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
          Length = 1137

 Score =  713 bits (1840), Expect = 0.0
 Identities = 362/532 (68%), Positives = 427/532 (80%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            V PP+G+ +PY ILFKI+SLVQ+G + GP L+  FFRLV P    N+  IE+ALEKL + 
Sbjct: 296  VQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQR-RNVACIEQALEKLYYL 354

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CY+PV+WL+EQY  Y   +  PKSPSI+LDDGLVY RRV VTP KVY+CGPE+NVSN
Sbjct: 355  KECCYDPVRWLTEQYDGYFKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 414

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR Y E IDNF+RVSFVDE+WEK+ S +L P+AST  G R TNIY+RILSTL+ G VI
Sbjct: 415  RVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGIR-TNIYERILSTLRKGFVI 473

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            GDKKFEFLAFSSSQLRDNSVWMFA    +TA +IR WMGDF +I+NVAKY+AR GQSF S
Sbjct: 474  GDKKFEFLAFSSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGS 533

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L+V +HEIE IPDV++  +G  YVFSDGIGKISA FA++VA+ CG+Q  TPSAFQI
Sbjct: 534  SRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARKVASNCGLQY-TPSAFQI 590

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDP S  KLSLRKSMSKY S N  LDVL WSK+QPC+LNRQL+TLLSTLG
Sbjct: 591  RYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLG 650

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            VKD + E+KQKEAVDQLD IL D L+AQEALE+MS GE  ++LK ML CGY PD EPFLS
Sbjct: 651  VKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLS 710

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFRASKLLDLR K+RIF+  GR+MMGCLDE+ TLEYGQVFVQ +  G++ F  + L
Sbjct: 711  MMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSED-L 769

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
                 + S   + I++  V VAKNPCLHPGD+R+L+AV+VPAL HMVDCVVF
Sbjct: 770  HPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVF 821


>gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]
          Length = 1101

 Score =  711 bits (1834), Expect = 0.0
 Identities = 352/532 (66%), Positives = 425/532 (79%)
 Frame = -2

Query: 1598 VGPPQGLELPYNILFKINSLVQNGYLAGPTLDATFFRLVHPSYIPNITHIERALEKLSHS 1419
            V PP+GLELPY +LFK+ SLVQ G L G  LD  FF+ ++P     I +IE AL+KL + 
Sbjct: 263  VQPPRGLELPYKLLFKVCSLVQTGCLPGMKLDTEFFQCLNPRRYA-IRYIEHALDKLYYI 321

Query: 1418 KESCYEPVKWLSEQYKKYLTSKHNPKSPSISLDDGLVYTRRVQVTPSKVYYCGPEINVSN 1239
            KE CY+PV WL EQY+KY T +  PK P+ISLDDGLVY  RVQVTP++VY+ GPE+N+SN
Sbjct: 322  KECCYDPVAWLREQYRKYQTFEELPKPPTISLDDGLVYIHRVQVTPTRVYFAGPEVNMSN 381

Query: 1238 RVLRKYHEAIDNFIRVSFVDEDWEKMRSMDLSPRASTSQGKRHTNIYKRILSTLKNGIVI 1059
            RVLR++   IDNF+RVSF+DE+W+KM S DLSP+ +T  G   T +Y+R+LSTL+NGI I
Sbjct: 382  RVLRQFSAHIDNFLRVSFIDEEWDKMYSTDLSPKVATGVGNGRTKLYERVLSTLRNGITI 441

Query: 1058 GDKKFEFLAFSSSQLRDNSVWMFAPLNEITAANIREWMGDFCEIRNVAKYSARLGQSFSS 879
            G+K+F+FLAFSSSQLR+NS+WMFAP++ +TA +IR WMGDF  IRNVAKY+ARLGQSFSS
Sbjct: 442  GEKRFQFLAFSSSQLRENSLWMFAPVDGLTADDIRRWMGDFSSIRNVAKYAARLGQSFSS 501

Query: 878  SMKSLTVNKHEIETIPDVEIEKNGKKYVFSDGIGKISAKFAQRVATKCGIQSSTPSAFQI 699
            S ++L V ++E+E IPDVE+ ++G  Y+FSDGIGKIS+ FA+RVATKCGI+   PSAFQI
Sbjct: 502  STETLKVAQYEVERIPDVEVVRDGTTYIFSDGIGKISSDFARRVATKCGIRDGVPSAFQI 561

Query: 698  RYGGYKGVVAVDPTSVNKLSLRKSMSKYVSKNTSLDVLTWSKFQPCFLNRQLITLLSTLG 519
            RYGGYKGVVAVDPTS  KLSLRKSM KY S NT LDVL+WSK+QPCF+NRQ+ITLLSTLG
Sbjct: 562  RYGGYKGVVAVDPTSSMKLSLRKSMLKYQSDNTKLDVLSWSKYQPCFMNRQIITLLSTLG 621

Query: 518  VKDHIFEKKQKEAVDQLDVILTDPLRAQEALEIMSSGEGIDVLKEMLKCGYKPDVEPFLS 339
            V+DH+FEKKQ+EAV QLD IL DPL+AQ+AL++MS GE  ++LKEMLKCGYKPD EPFLS
Sbjct: 622  VRDHVFEKKQREAVAQLDDILVDPLKAQDALDLMSPGENTNILKEMLKCGYKPDEEPFLS 681

Query: 338  MMLQTFRASKLLDLRNKTRIFLSKGRSMMGCLDETGTLEYGQVFVQVSRVGNKLFGNNAL 159
            MMLQTFR +KLLDLR K RIF+ + R MMGC+DETGTLEYGQVFVQ S  G+        
Sbjct: 682  MMLQTFRLAKLLDLRVKARIFIPQARQMMGCMDETGTLEYGQVFVQFSGTGSSGLYEGTK 741

Query: 158  STSRGNESNQGSLIVEEKVFVAKNPCLHPGDVRILQAVNVPALQHMVDCVVF 3
             T  G            KV VAKNPCLHPGDVR+L+AV+VP LQHMVDCVVF
Sbjct: 742  YTVTG------------KVAVAKNPCLHPGDVRVLRAVDVPELQHMVDCVVF 781