BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00011423
         (3558 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]             1457   0.0  
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]    1434   0.0  
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...  1426   0.0  
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...  1425   0.0  
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                        1405   0.0  
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...  1404   0.0  
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...  1388   0.0  
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...  1385   0.0  
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...  1379   0.0  
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]      1377   0.0  
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...  1369   0.0  
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                 1367   0.0  
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                 1363   0.0  
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                1233   0.0  
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                1217   0.0  
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...  1189   0.0  
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...  1142   0.0  
ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prun...  1094   0.0  
gb|AAM15062.1| putative retroelement integrase [Arabidopsis thal...  1088   0.0  
ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prun...  1086   0.0  

>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score = 1457 bits (3771), Expect = 0.0
 Identities = 710/1186 (59%), Positives = 885/1186 (74%), Gaps = 1/1186 (0%)
 Frame = +3

Query: 3    LHKAIKVEKQIKXXXXXXXXXXNNPWRPNWKDNKIPFKPKEDAKSKPLISIPKDRPETKS 182
            LHKAI  EKQ+K            P     KD +  F+       KP +     + + K+
Sbjct: 593  LHKAIMFEKQLKRRSSKPSFGSGKP--SYHKDERSGFQKDYKPFIKPKVEDQDQKGKGKA 650

Query: 183  LI-KSRQIKCFRCQGFGHIASECPNKRVMVVLANGDIESASSSDNEMPPLEDCSDVEVEE 359
            ++ ++R IK F+CQG GH ASEC NKR+M++   G+IES      E    ED      E 
Sbjct: 651  VMTRTRDIKGFKCQGHGHYASECSNKRIMIIKDTGEIESEDEQLEESSSTED-----YEA 705

Query: 360  PVHGDLLVTRRALSIQPKDEGDEEQREHIFHTRCHVKDKVCTLIIDSGSCTNVASTLLVE 539
            P  G+LLVT +ALS+  K + ++EQRE++FH+ C V DKVC+LIID GSCTNVAS  +VE
Sbjct: 706  PSKGELLVTMKALSVIAKTD-EQEQRENLFHSSCMVNDKVCSLIIDGGSCTNVASETMVE 764

Query: 540  KLNLKWQKLPKPYKLQWLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRP 719
            KL LK  K P+PYKLQWLN+ GE+ V++QV+VP SIGK                      
Sbjct: 765  KLGLKVMKHPRPYKLQWLNEDGEMSVDRQVKVPLSIGK---------------------- 802

Query: 720  WQFDRRVSHDGYKNCYSFVMNNRKIILAPLKPLQAYEDQVRIASECKKREKQRCEQKGEQ 899
                                   K IL P+ P + Y DQ+ +    K R+KQ  +     
Sbjct: 803  -----------------------KTILVPMTPHEVYLDQLSM----KMRKKQTVKPSNLM 835

Query: 900  SEQPEEKNKVLSVLVDKYDVKSVMIARPQVQVLMYKDVYFSTDDLNXXXXXXXXXXXQDF 1079
              + ++K                   +    + ++K+   S  +             QD+
Sbjct: 836  INESKQKGSGF---------------QSSKLLFVFKETLMSLTNPEQAIPSKIKFLLQDY 880

Query: 1080 EDLFPEEIPHGLPPLRGIEHQIDFIPGSAIPNRPAYRANPEKTKEIQRQVDELLQKGFVR 1259
             D+FPEE P GLPP+RGIEHQIDF+PG+++PNRPAYR NP +TKE+++QV EL+++G +R
Sbjct: 881  TDVFPEENPVGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELEKQVTELMERGHIR 940

Query: 1260 ESLSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHHIPRLDDMFDELHGSRLFSKID 1439
            ES+SPC+VPVLLVPKKDG+WRMCVDCRAIN ITVKYRH IPRLDDM DELHGS +FSK+D
Sbjct: 941  ESMSPCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSSIFSKVD 1000

Query: 1440 LKNGYYQIRMKEGDEWKTAFKTRYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFMGKFVV 1619
            LK+GY+QIRMKEGDEWKTAFKT  GLYEWLVMPFGLTNAPSTFMRLMNHVLRAF+G+FV+
Sbjct: 1001 LKSGYHQIRMKEGDEWKTAFKTIQGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGRFVI 1060

Query: 1620 VYFDDILVYSKNVDDHVKHLHAVFSVLREHQLYVNLKKYTFCMESVVFLGFVVSSQGISV 1799
            VYFDDILVYSK++++HV+HL  V  VLR+ +LY NLKK TF  +++VFLGFVVS+ G+ V
Sbjct: 1061 VYFDDILVYSKSLEEHVEHLKMVLEVLRKEKLYANLKKCTFGTDNLVFLGFVVSTDGVKV 1120

Query: 1800 DEEKVRAIKDWPTPKNANEVRSFHGLASFYRRFVQDFSSIAAPLNELXXXXXXXXXXXXH 1979
            DEEKV+AI++WP+PK+  EVRSFHGLA FYRRFV+DFS++AAPL E+             
Sbjct: 1121 DEEKVKAIREWPSPKSVGEVRSFHGLAGFYRRFVKDFSTLAAPLTEVIKKNVGFKWEQAQ 1180

Query: 1980 DQAFQTLKDKLTNAPLLCLPNFDKAFEIECDASGIGVGAVLMQDSKPIAYFSEKLSGAAL 2159
            + AFQ LK+KLT+AP+L LP+F K FEIECDASG+G+G VLMQD KPIAYFSEKL GA L
Sbjct: 1181 EDAFQALKEKLTHAPVLSLPDFLKTFEIECDASGVGIGVVLMQDKKPIAYFSEKLGGATL 1240

Query: 2160 NYPTYDKELYALVRTLRTWQHYLWPREFIIHSDHESLKFLKTQGKLNKRHAKWLEFIKTF 2339
            NYPTYDKELYALVR L+T QHYLWP+EF+IH+DHESLK LK Q KLNKRHA+W+EFI+TF
Sbjct: 1241 NYPTYDKELYALVRALQTGQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHARWVEFIETF 1300

Query: 2340 PYVIKYKRGKENVVADALSRRYVLLTSLQTKLLGFELIKDLYANDSDFSQVWNACAKCAF 2519
            PYVIKYK+GK+NVVADALSRRYVLL+SL  KLLGFE IK LYANDSDF +++++C K AF
Sbjct: 1301 PYVIKYKKGKDNVVADALSRRYVLLSSLDAKLLGFEHIKSLYANDSDFEKIYSSCEKFAF 1360

Query: 2520 GDFYRHEGFLFKKDKLCVPNCSVRELLVRESHGGGLMGHFGVLKTLDILREHFYWPLIKH 2699
            G +YRH+GFLF  ++LC+PN S+REL +RE+HGGGLMGHFGV KT+ ++++HF+WP +K 
Sbjct: 1361 GKYYRHDGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTIKVMQDHFHWPHMKR 1420

Query: 2700 DVQSVCDKCITCRQAKSKIRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNGKDSIFVVV 2879
            DV+ +C++C TC+QAK+K +PHGLYTPLP+P+ PW DISMDFV+GLPRT+ GKDSIFVVV
Sbjct: 1421 DVERICERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIFVVV 1480

Query: 2880 DKFSKMSHFIACTKTNDATHIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFWRTLWSKLG 3059
            D+FSKM+HFI C KT+DA HIA LFF+EVVRLHG+PK+IVSDRD KFLSYFW+TLWSKLG
Sbjct: 1481 DRFSKMAHFIPCHKTDDAIHIANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLG 1540

Query: 3060 TKLLFSTVAHPQTDGQTEVVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNRTIHSTTSF 3239
            TKLLFST  HPQTDGQTEVVNRTL+TLLRA+I+KNLK WE CLPH+EFAYN ++HS + F
Sbjct: 1541 TKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKF 1600

Query: 3240 SPFEIVYGFNPLTPVDILPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNEQYAKQAN 3419
            SPF+IVYGFNP TP+D++PLP +E  +LDGKKKA+ V+ +H + + NI+ K +QYAK AN
Sbjct: 1601 SPFQIVYGFNPTTPLDLMPLPLSERVSLDGKKKAELVQQIHEQAKKNIEEKTKQYAKHAN 1660

Query: 3420 KGRLKVIFHPGDWVWVHLRKERFPTQRKSKLQPRGDGPFQVLERIN 3557
            K R +VIF+ GD VW+HLRKERFP +RKSKL  R DGPF+VL+RIN
Sbjct: 1661 KSRKEVIFNEGDLVWIHLRKERFPKERKSKLMSRIDGPFKVLKRIN 1706


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score = 1434 bits (3712), Expect = 0.0
 Identities = 690/1145 (60%), Positives = 869/1145 (75%), Gaps = 19/1145 (1%)
 Frame = +3

Query: 180  SLIKSRQIKCFRCQGFGHIASECPNKRVMVVLANGDIESASSSDNEMPPLEDCSDVEVEE 359
            S  KS  I+CF+C G GH+A ECPN R +VV   G+ ES S  + E    E+  + ++ E
Sbjct: 379  SSTKSSGIQCFKCGGRGHVARECPNNRTIVVNDQGEYESTSEEEQEDSEEENNLEKDICE 438

Query: 360  PVHGDLLVTRRALSIQPKDEGDEEQREHIFHTRCHVKDKVCTLIIDSGSCTNVASTLLVE 539
               G  LV  + LS+Q  D  +  QR ++F TR  V+DKV  +IID GSC N+AS  +VE
Sbjct: 439  FESGAALVVTQILSVQMSD-AENGQRHNLFQTRAKVQDKVVKVIIDGGSCHNLASKEMVE 497

Query: 540  KLNLKWQKLPKPYKLQWLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRP 719
            KL LK  K P PY +QWLN+ G +K+ ++V+VPF IG+Y+D + CDVAPM   H+LLGRP
Sbjct: 498  KLGLKLLKHPHPYHVQWLNNSGSIKIAQRVKVPFKIGEYIDTMECDVAPMTVCHMLLGRP 557

Query: 720  WQFDRRVSHDGYKNCYSFVMNNRKIILAPLKPLQAYEDQVRIASECKKREKQRCEQKG-- 893
            WQ+DR   H G  N Y+     +++IL P+ P Q   + ++ +SE +    +  ++    
Sbjct: 558  WQYDRSSLHCGRTNQYTIKWKGKELILKPMTPQQILAEHLQKSSEVRNESAKEGQKNNLS 617

Query: 894  ------EQSEQP------EEKNKVLSVLVDKYDVKSVMIARPQVQ-VLMYKDVYFSTDDL 1034
                   +S +P      + + + L ++  K +++ V     QV  +L+ KD   S +DL
Sbjct: 618  APHKSVSESHKPNMRDNKKREGENLVMIATKSEMRDVRRNPEQVLFILVCKDTLLSANDL 677

Query: 1035 NXXXXXXXXXXXQDFEDLFPEEIPHGLPPLRGIEHQIDFIPGSAIPNRPAYRANPEKTKE 1214
                        Q++ED+FPEE P GLPPLRGIEHQID IPG+ +PNRPAYR NPE+TKE
Sbjct: 678  TSVPSVVARVL-QEYEDVFPEETPVGLPPLRGIEHQIDLIPGATLPNRPAYRTNPEETKE 736

Query: 1215 IQRQVDELLQKGFVRESLSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHHIPRLDD 1394
            IQRQV  LL KG+VRESLSPC+VPV+LVPKKDG+WRMCVDCRAIN ITV+YRH IPRLDD
Sbjct: 737  IQRQVQALLDKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITVRYRHPIPRLDD 796

Query: 1395 MFDELHGSRLFSKIDLKNGYYQIRMKEGDEWKTAFKTRYGLYEWLVMPFGLTNAPSTFMR 1574
            M DEL GS +FSKIDL++G++QIRMK GDEWKTAFKT++GLYEWLVMPFGLTNAPSTFMR
Sbjct: 797  MLDELSGSMIFSKIDLRSGFHQIRMKIGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMR 856

Query: 1575 LMNHVLRAFMGKFVVVYFDDILVYSKNVDDHVKHLHAVFSVLREHQLYVNLKKYTFCMES 1754
            LMNHVLRAF+GKFVVVYFDDIL+YSK +++HV H+  V  VLR+ QLY NL+K TFC + 
Sbjct: 857  LMNHVLRAFIGKFVVVYFDDILIYSKTLEEHVAHIQQVLDVLRKEQLYANLEKCTFCTDQ 916

Query: 1755 VVFLGFVVSSQGISVDEEKVRAIKDWPTPKNANEVRSFHGLASFYRRFVQDFSSIAAPLN 1934
            VVFLGFVVS  GI VDE KV+AIKDWPTP+N ++V+SF GLA FYRRFV+ FS+IAAPLN
Sbjct: 917  VVFLGFVVSGLGIQVDESKVKAIKDWPTPENVSQVKSFRGLAGFYRRFVRGFSTIAAPLN 976

Query: 1935 ELXXXXXXXXXXXXHDQAFQTLKDKLTNAPLLCLPNFDKAFEIECDASGIGVGAVLMQDS 2114
            EL             ++AFQ LK +L+  PLL LP+F K FE+ECDASGIG+G VLMQ+ 
Sbjct: 977  ELTKKGVAFQWGEPQEKAFQELKKRLSEGPLLVLPDFTKTFEVECDASGIGIGGVLMQNG 1036

Query: 2115 KPIAYFSEKLSGAALNYPTYDKELYALVRTLRTWQHYLWPREFIIHSDHESLKFLKTQGK 2294
            +P+AYFSEKL GA LNY  YDKELYALVR L TWQHYLWP+EF+IHSDHE+LK+LK Q K
Sbjct: 1037 QPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHSDHEALKYLKGQAK 1096

Query: 2295 LNKRHAKWLEFIKTFPYVIKYKRGKENVVADALSRRYVLLTSLQTKLLGFELIKDLYAND 2474
            LN+RHAKW+EFI+TFPYV+KYK+GKEN+VADALSR+ VLL  L+ K+ G E IK+LY+ D
Sbjct: 1097 LNRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNVLLNQLEVKVTGIESIKELYSAD 1156

Query: 2475 SDFSQVWNACAKCAFG----DFYRHEGFLFKKDKLCVPNCSVRELLVRESHGGGLMGHFG 2642
             DFS+ +   AKC  G     ++ H+GFLF+ +KLCVP+CSVR LL++E+H GGLMGHFG
Sbjct: 1157 LDFSEPY---AKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQETHAGGLMGHFG 1213

Query: 2643 VLKTLDILREHFYWPLIKHDVQSVCDKCITCRQAKSKIRPHGLYTPLPVPNQPWTDISMD 2822
              KT D+L +HFYWP ++ DVQ +  +C+TC +AKSK+ PHGLYTPLPVP+ PW DISMD
Sbjct: 1214 WRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMD 1273

Query: 2823 FVLGLPRTQNGKDSIFVVVDKFSKMSHFIACTKTNDATHIAELFFKEVVRLHGLPKSIVS 3002
            FVLGLPRT+ G+DSIFVVVD+FSKM+HFI C K++DA+HIA LFF E+VRLHG+PK+IVS
Sbjct: 1274 FVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVS 1333

Query: 3003 DRDVKFLSYFWRTLWSKLGTKLLFSTVAHPQTDGQTEVVNRTLTTLLRAIIQKNLKQWEK 3182
            DRD KFLSYFW+TLW+KLGT+LLFST  HPQTDGQTEVVNRTL+ LLRA+I+KNLK+WE+
Sbjct: 1334 DRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEE 1393

Query: 3183 CLPHIEFAYNRTIHSTTSFSPFEIVYGFNPLTPVDILPLPTNEHANLDGKKKADFVKDLH 3362
            CLPH+EFAYNR +HSTT+  PFE+VYGF PL+P+D+LPLP  E ++++  K+A +VK +H
Sbjct: 1394 CLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLPLPLQERSDMEASKRATYVKKIH 1453

Query: 3363 AKVRANIDRKNEQYAKQANKGRLKVIFHPGDWVWVHLRKERFPTQRKSKLQPRGDGPFQV 3542
             K +  I+++++ YA  ANK R KV F PGD VWVHLRK+RFP +RKSKL PRGDGPF+V
Sbjct: 1454 EKTKEAIEKRSKYYAAWANKNRKKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRV 1513

Query: 3543 LERIN 3557
            L +IN
Sbjct: 1514 LSKIN 1518


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score = 1426 bits (3691), Expect = 0.0
 Identities = 719/1234 (58%), Positives = 888/1234 (71%), Gaps = 53/1234 (4%)
 Frame = +3

Query: 12   AIKVEKQIKXXXXXXXXXXNNPWR--PN------W--KDNKIPFKPKEDAKSKPLISIPK 161
            ++KVEKQI+          NN WR  PN      W  ++ K P KP++D + K  +    
Sbjct: 276  SVKVEKQIEKKQQ------NNSWRSRPNTISKKPWSTQEGKAPSKPQDD-RGKGKVEKGG 328

Query: 162  DRPETKSLIKSRQIKCFRCQGFGHIASECPNKRVMVVLANGDIESASSSDNEMPPLEDCS 341
                 KS   S  I+C +C G GH+  ECP++R +++  NG+ ES  S   E        
Sbjct: 329  KTFNPKSSKPSSSIQCHKCHGRGHMMHECPSRRNILLRENGEYESEKSEREEEEGEGVSE 388

Query: 342  DVEVEEPVHGDLLVTRRALSIQPKDEGDEEQREHIFHTRCHVKDKVCTLIIDSGSCTNVA 521
            + ++E P  G + V RR ++I      DE QRE++FHTRC +K K  ++IID GSC NV 
Sbjct: 389  EDDLELPNDGIIGVVRRIMTIN-LGSVDEGQRENLFHTRCGIKGKTYSMIIDGGSCANVV 447

Query: 522  STLLVEKLNLKWQKLPKPYKLQWLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGH 701
            S+ LV+KL +   K   PY+LQWLNDCGEV+VNKQ  + F++G+Y DE++CDV PM A H
Sbjct: 448  SSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVNKQCMISFNVGRYEDEILCDVVPMQACH 507

Query: 702  ILLGRPWQFDRRVSHDGYKNCYSFVMNNRKIILAPLKPLQAYEDQVR-----------IA 848
            +LLGRPWQ+DR  +H G KN YS + N +K  LAPL P Q +EDQ R           + 
Sbjct: 508  VLLGRPWQYDRDTTHHGRKNRYSLLHNGKKYTLAPLSPSQVFEDQKRLRETMGKQKGEVK 567

Query: 849  SECKKREK-QRCEQK----------------------------GEQSEQPEEKNKVLSVL 941
            SE + +EK Q  E+K                            GE+ E  E+KN+ L + 
Sbjct: 568  SELEGKEKGQEIEKKKDGREKEREGSDLSKEVKEGVSKKIKCFGERKEAKEKKNESLYI- 626

Query: 942  VDKYDVKSVMIARPQ---VQVLMYKDVYFSTDDLNXXXXXXXXXXXQDFEDLFPEEIPHG 1112
                  K  + AR +   + +L YK++  + + L            Q+FED+FP++ P G
Sbjct: 627  ----KAKECLNARREGLPIILLTYKEILINFEQLTPSLPNSVSSLLQNFEDVFPDDTPKG 682

Query: 1113 LPPLRGIEHQIDFIPGSAIPNRPAYRANPEKTKEIQRQVDELLQKGFVRESLSPCSVPVL 1292
            LPPLRGIEHQIDF+PGS +PNRPAYR+NPE+TKE+QRQV+ELL KGFVRES+SPCSVPVL
Sbjct: 683  LPPLRGIEHQIDFVPGSQLPNRPAYRSNPEETKELQRQVEELLVKGFVRESMSPCSVPVL 742

Query: 1293 LVPKKDGTWRMCVDCRAINKITVKYRHHIPRLDDMFDELHGSRLFSKIDLKNGYYQIRMK 1472
            LVPKKDGTWRMCVDCRAINKITVKYRH IPRLDDM D+L GS++FSKIDLK+GY+QIR+ 
Sbjct: 743  LVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDQLCGSKIFSKIDLKSGYHQIRLN 802

Query: 1473 EGDEWKTAFKTRYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFMGKFVVVYFDDILVYSK 1652
             GDEWKTAFKT+YGLYEWLVMPFGLTNAPSTFMRLMNHV + F GKF+VVYFDDIL++S+
Sbjct: 803  PGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHVFKDFHGKFIVVYFDDILIFSQ 862

Query: 1653 NVDDHVKHLHAVFSVLREHQLYVNLKKYTFCMESVVFLGFVVSSQGISVDEEKVRAIKDW 1832
            N+D+H++HL  VF VLR  +L+ NLKK TFC++ VVFLGFVVSS G+ VD+EK++AIK+W
Sbjct: 863  NLDEHLEHLKKVFEVLRNQRLFANLKKCTFCVDRVVFLGFVVSSMGVEVDDEKIKAIKEW 922

Query: 1833 PTPKNANEVRSFHGLASFYRRFVQDFSSIAAPLNELXXXXXXXXXXXXHDQAFQTLKDKL 2012
            P P +  EVRSFHGLASFYRRFV+DFS+IAAPL E+             D AF  LKDKL
Sbjct: 923  PKPNSVTEVRSFHGLASFYRRFVRDFSTIAAPLTEVIKKDKVFTWGKEQDDAFNLLKDKL 982

Query: 2013 TNAPLLCLPNFDKAFEIECDASGIGVGAVLMQDSKPIAYFSEKLSGAALNYPTYDKELYA 2192
             +APLL LP+F K+FE+ECDASG G+GAVLMQDSKPIAYFSEKLSGA LNY T DKELYA
Sbjct: 983  CSAPLLQLPDFSKSFEVECDASGKGIGAVLMQDSKPIAYFSEKLSGATLNYSTNDKELYA 1042

Query: 2193 LVRTLRTWQHYLWPREFIIHSDHESLKFLKTQGKLNKRHAKWLEFIKTFPYVIKYKRGKE 2372
            L                             +QGKL++RHAKW+EFI+TFPYVI YK+GKE
Sbjct: 1043 L-----------------------------SQGKLSRRHAKWVEFIETFPYVIAYKQGKE 1073

Query: 2373 NVVADALSRRYVLLTSLQTKLLGFELIKDLYANDSDFSQVWNACAKCAFGDFYRHEGFLF 2552
            NVVADALSRRYVL+++L +KLLGF+ IK LYANDSDF +++  C    F  F   + FLF
Sbjct: 1074 NVVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLF 1133

Query: 2553 KKDKLCVPNCSVRELLVRESHGGGLMGHFGVLKTLDILREHFYWPLIKHDVQSVCDKCIT 2732
            K++KLCVPNCS+REL VRE+H GGLMGHFGV KTL+IL EHFYWP ++ DV+ VC  C+ 
Sbjct: 1134 KENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFYWPSMRKDVEKVCSYCLE 1193

Query: 2733 CRQAKSKIRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNGKDSIFVVVDKFSKMSHFIA 2912
            C+QAKS+  PHGLYTPLPV N PW DISMDF+LGLPRT+ GKDSIFVVVD+FSKM+ FI 
Sbjct: 1194 CKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMARFIP 1253

Query: 2913 CTKTNDATHIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFWRTLWSKLGTKLLFSTVAHP 3092
            C KTNDA+H+A+LF KEVV+LHG+P++IVSDRD KFLS+FWR LW KLGTKLLFST  HP
Sbjct: 1254 CKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHP 1313

Query: 3093 QTDGQTEVVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNRTIHSTTSFSPFEIVYGFNP 3272
            QTDGQTEVVNRTL  +LRAI++  L  WE  LP +EFAYNRT HS+T  +PFE+VYGFNP
Sbjct: 1314 QTDGQTEVVNRTLGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNP 1373

Query: 3273 LTPVDILPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNEQYAKQANKGRLKVIFHPG 3452
            LTP+D+LPLPTN+ ANLDGKKKAD +K +H + R  I++KN++ A + NKGR  VIF PG
Sbjct: 1374 LTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVIFKPG 1433

Query: 3453 DWVWVHLRKERFPTQRKSKLQPRGDGPFQVLERI 3554
            D VWVH+RKERFP++RK+KL PRG GP++VLERI
Sbjct: 1434 DLVWVHMRKERFPSKRKTKLDPRGSGPYKVLERI 1467


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score = 1425 bits (3688), Expect = 0.0
 Identities = 719/1234 (58%), Positives = 888/1234 (71%), Gaps = 53/1234 (4%)
 Frame = +3

Query: 12   AIKVEKQIKXXXXXXXXXXNNPWR--PN------W--KDNKIPFKPKEDAKSKPLISIPK 161
            ++KVEKQI+          NN WR  PN      W  ++ K P KP++D + K  +    
Sbjct: 276  SVKVEKQIEKKQQ------NNSWRSRPNTISKKPWSTQEGKAPSKPQDD-RGKGKVEKGG 328

Query: 162  DRPETKSLIKSRQIKCFRCQGFGHIASECPNKRVMVVLANGDIESASSSDNEMPPLEDCS 341
                 KS   S  I+C +C G GH+  ECP++R +++  NG+ ES  S   E        
Sbjct: 329  KTFNPKSSKPSSSIQCHKCHGRGHMMHECPSRRNILLRENGEYESEKSEREEEEGEGVSE 388

Query: 342  DVEVEEPVHGDLLVTRRALSIQPKDEGDEEQREHIFHTRCHVKDKVCTLIIDSGSCTNVA 521
            + ++E P  G + V RR ++I      DE QRE++FHTRC +K K  ++IID GSC NV 
Sbjct: 389  EDDLELPNDGIIGVVRRIMTIN-LGSVDEGQRENLFHTRCGIKGKTYSMIIDGGSCANVV 447

Query: 522  STLLVEKLNLKWQKLPKPYKLQWLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGH 701
            S+ LV+KL +   K   PY+LQWLNDCGEV+VNKQ  + F++G+Y DE++CDV PM A H
Sbjct: 448  SSYLVDKLGIACMKRSTPYRLQWLNDCGEVQVNKQCMISFNVGRYEDEILCDVVPMQACH 507

Query: 702  ILLGRPWQFDRRVSHDGYKNCYSFVMNNRKIILAPLKPLQAYEDQVR-----------IA 848
            +LLGRPWQ+DR  +H G KN YS + N +K  LAPL P Q +EDQ R           + 
Sbjct: 508  VLLGRPWQYDRDTTHHGRKNRYSLLHNGKKYTLAPLSPSQVFEDQKRLRETMGKQKGEVK 567

Query: 849  SECKKREK-QRCEQK----------------------------GEQSEQPEEKNKVLSVL 941
            SE + +EK Q  E+K                            GE+ E  E+KN+ L + 
Sbjct: 568  SELEGKEKGQEIEKKKDGREKEREGSDLSKEVKEGVSKKIKCFGERKEAKEKKNESLYI- 626

Query: 942  VDKYDVKSVMIARPQ---VQVLMYKDVYFSTDDLNXXXXXXXXXXXQDFEDLFPEEIPHG 1112
                  K  + AR +   + +L YK++  + + L            Q+FED+FP++ P G
Sbjct: 627  ----KAKECLNARREGLPIILLTYKEILINFEQLTPSLPNSVSSLLQNFEDVFPDDTPKG 682

Query: 1113 LPPLRGIEHQIDFIPGSAIPNRPAYRANPEKTKEIQRQVDELLQKGFVRESLSPCSVPVL 1292
            LPPLRGIEHQIDF+PGS +PNRPAYR+NPE+TKE+QRQV+ELL KGFVRES+SPCSVPVL
Sbjct: 683  LPPLRGIEHQIDFVPGSQLPNRPAYRSNPEETKELQRQVEELLVKGFVRESMSPCSVPVL 742

Query: 1293 LVPKKDGTWRMCVDCRAINKITVKYRHHIPRLDDMFDELHGSRLFSKIDLKNGYYQIRMK 1472
            LVPKKDGTWRMCVDCRAINKITVKYRH IPRLDDM D+L GS++FSKIDLK+GY+QIR+ 
Sbjct: 743  LVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDQLCGSKIFSKIDLKSGYHQIRLN 802

Query: 1473 EGDEWKTAFKTRYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFMGKFVVVYFDDILVYSK 1652
             GDEWKTAFKT+YGLYEWLVMPFGLTNAPSTFMRLMNHV + F GKF+VVYFDDIL++S+
Sbjct: 803  PGDEWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHVFKDFHGKFIVVYFDDILIFSQ 862

Query: 1653 NVDDHVKHLHAVFSVLREHQLYVNLKKYTFCMESVVFLGFVVSSQGISVDEEKVRAIKDW 1832
            N+D+H++HL  VF VLR  +L+ NLKK TFC++ VVFLGFVVSS G+ VD+EK++AIK+W
Sbjct: 863  NLDEHLEHLKKVFEVLRNQRLFANLKKCTFCVDRVVFLGFVVSSMGVEVDDEKIKAIKEW 922

Query: 1833 PTPKNANEVRSFHGLASFYRRFVQDFSSIAAPLNELXXXXXXXXXXXXHDQAFQTLKDKL 2012
            P P +  EVRSFHGLASFYRRFV+DFS+IAAPL E+             D AF  LKDKL
Sbjct: 923  PKPNSVTEVRSFHGLASFYRRFVRDFSTIAAPLTEVIKKDKVFTWGKEQDDAFNLLKDKL 982

Query: 2013 TNAPLLCLPNFDKAFEIECDASGIGVGAVLMQDSKPIAYFSEKLSGAALNYPTYDKELYA 2192
             +APLL LP+F K+FE+ECDASG G+GAVLMQDSKPIAYFSEKLSGA LNY T DKELYA
Sbjct: 983  CSAPLLQLPDFSKSFEVECDASGKGIGAVLMQDSKPIAYFSEKLSGATLNYSTNDKELYA 1042

Query: 2193 LVRTLRTWQHYLWPREFIIHSDHESLKFLKTQGKLNKRHAKWLEFIKTFPYVIKYKRGKE 2372
            L                             +QGKL++RHAKW+EFI+TFPYVI YK+GKE
Sbjct: 1043 L-----------------------------SQGKLSRRHAKWVEFIETFPYVIAYKQGKE 1073

Query: 2373 NVVADALSRRYVLLTSLQTKLLGFELIKDLYANDSDFSQVWNACAKCAFGDFYRHEGFLF 2552
            NVVADALSRRYVL+++L +KLLGF+ IK LYANDSDF +++  C    F  F   + FLF
Sbjct: 1074 NVVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLF 1133

Query: 2553 KKDKLCVPNCSVRELLVRESHGGGLMGHFGVLKTLDILREHFYWPLIKHDVQSVCDKCIT 2732
            K++KLCVPNCS+REL VRE+H GGLMGHFGV KTL+IL EHFYWP ++ DV+ VC  C+ 
Sbjct: 1134 KENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFYWPSMRKDVEKVCSYCLE 1193

Query: 2733 CRQAKSKIRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNGKDSIFVVVDKFSKMSHFIA 2912
            C+QAKS+  PHGLYTPLPV N PW DISMDF+LGLPRT+ GKDSIFVVVD+FSKM+ FI 
Sbjct: 1194 CKQAKSRTLPHGLYTPLPVSNFPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMARFIP 1253

Query: 2913 CTKTNDATHIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFWRTLWSKLGTKLLFSTVAHP 3092
            C KTNDA+H+A+LF KEVV+LHG+P++IVSDRD KFLS+FWR LW KLGTKLLFST  HP
Sbjct: 1254 CKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHP 1313

Query: 3093 QTDGQTEVVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNRTIHSTTSFSPFEIVYGFNP 3272
            QTDGQTEVVNRTL  +LRAI++  L  WE  LP +EFAYNRT HS+T  +PFE+VYGFNP
Sbjct: 1314 QTDGQTEVVNRTLGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNP 1373

Query: 3273 LTPVDILPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNEQYAKQANKGRLKVIFHPG 3452
            LTP+D+LPLPTN+ ANLDGKKKAD +K +H + R  I++KN++ A + NKGR  VIF PG
Sbjct: 1374 LTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVIFKPG 1433

Query: 3453 DWVWVHLRKERFPTQRKSKLQPRGDGPFQVLERI 3554
            D VWVH+RKERFP++RK+KL PRG GP++VLERI
Sbjct: 1434 DLVWVHMRKERFPSKRKTKLDPRGSGPYKVLERI 1467


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score = 1405 bits (3636), Expect = 0.0
 Identities = 676/1162 (58%), Positives = 855/1162 (73%), Gaps = 14/1162 (1%)
 Frame = +3

Query: 114  KPKEDAKSKPLISIPKDRPETKSLI---KSRQIKCFRCQGFGHIASECPNKRVMVVLANG 284
            KP+  + +    S  K      S+    ++R + C+RC+G+GH+  +CPN+RV+VV  +G
Sbjct: 360  KPRASSTNSATKSAQKPAGSASSVASTGRTRDVLCYRCKGYGHVQRDCPNQRVLVVKDDG 419

Query: 285  DIESASSSDNEMPPLEDCSDVEVEEPV----------HGDLLVTRRALSIQPKDEGDEEQ 434
               SAS  D     L    D   +EP           H + L+ +R LS Q  ++ ++ Q
Sbjct: 420  GYSSASDLDEATLALLAADDAGTKEPPEEQIGADDAEHYESLIVQRVLSAQ-MEKAEQNQ 478

Query: 435  REHIFHTRCHVKDKVCTLIIDSGSCTNVASTLLVEKLNLKWQKLPKPYKLQWLNDCGEVK 614
            R  +F T+C +K++ C LIID GSC N+AS+ +VEKL L  +  P PY +QWLN+ G+VK
Sbjct: 479  RHTLFQTKCVIKERSCRLIIDGGSCNNLASSDMVEKLALTTKPHPHPYHIQWLNNSGKVK 538

Query: 615  VNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWQFDRRVSHDGYKNCYSFVMNNRKI 794
            V K VR+ F+IG Y D V CDV PM A +ILLGRPWQFD    H G  N YS + +++KI
Sbjct: 539  VTKLVRINFAIGSYRDVVDCDVVPMDACNILLGRPWQFDSDCMHHGRSNQYSLIHHDKKI 598

Query: 795  ILAPLKPLQAYEDQVRIASECKKREKQRCEQKGEQSEQPEEKNKVLSVLVDKYDVKSVMI 974
            IL P+ P     D V  A++ K    +  +  G   +  + K   L  L  K DV  +  
Sbjct: 599  ILLPMSPEAIVRDDVAKATKAKTENNKNIKVVGNNKDGIKLKGHCL--LATKTDVNELFA 656

Query: 975  ARPQVQVLMYKDVYFSTDDLNXXXXXXXXXXXQDFEDLFPEEIPHGLPPLRGIEHQIDFI 1154
            +      L+ KD   S  D+            Q++ D+FP EIP GLPP+RGIEHQID I
Sbjct: 657  STTVAYALVCKDALISIQDMQHSLPPVITNILQEYSDVFPSEIPEGLPPIRGIEHQIDLI 716

Query: 1155 PGSAIPNRPAYRANPEKTKEIQRQVDELLQKGFVRESLSPCSVPVLLVPKKDGTWRMCVD 1334
            PG+++PNR  YR NPE+TKEIQRQV ELL KG+VRESLSPC+VPV+LVPKKDGTWRMCVD
Sbjct: 717  PGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCAVPVILVPKKDGTWRMCVD 776

Query: 1335 CRAINKITVKYRHHIPRLDDMFDELHGSRLFSKIDLKNGYYQIRMKEGDEWKTAFKTRYG 1514
            CRAIN IT++YRH IPRLDDM DEL G+ +FSK+DL++GY+QIRMK GDEWKTAFKT++G
Sbjct: 777  CRAINNITIRYRHPIPRLDDMLDELSGAIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFG 836

Query: 1515 LYEWLVMPFGLTNAPSTFMRLMNHVLRAFMGKFVVVYFDDILVYSKNVDDHVKHLHAVFS 1694
            LYEWLVMPFGLTNAPSTFMRLMN VLRAF+GKFVVVYFDDIL+YSK++D+HV H+ AVF+
Sbjct: 837  LYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGKFVVVYFDDILIYSKSMDEHVDHMRAVFN 896

Query: 1695 VLREHQLYVNLKKYTFCMESVVFLGFVVSSQGISVDEEKVRAIKDWPTPKNANEVRSFHG 1874
             LR+ +L+ NL+K TFC + V FLG+VV+ QGI VD+ KV AI  WP PK   +VRSF G
Sbjct: 897  ALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHGWPMPKTITQVRSFLG 956

Query: 1875 LASFYRRFVQDFSSIAAPLNELXXXXXXXXXXXXHDQAFQTLKDKLTNAPLLCLPNFDKA 2054
            LA FYRRFV+DFS+IAAPLNEL             + AF  LKDKLT+APLL LP+F+K 
Sbjct: 957  LAGFYRRFVKDFSTIAAPLNELTKKGVHFSWGKVQEHAFNVLKDKLTHAPLLQLPDFNKT 1016

Query: 2055 FEIECDASGIGVGAVLMQDSKPIAYFSEKLSGAALNYPTYDKELYALVRTLRTWQHYLWP 2234
            FE+ECDASGIG+G VL+Q+ KP+AYFSEKLSG+ LNY TYDKELYALVRTL TWQHYLWP
Sbjct: 1017 FELECDASGIGLGGVLLQEGKPVAYFSEKLSGSVLNYSTYDKELYALVRTLETWQHYLWP 1076

Query: 2235 REFIIHSDHESLKFLKTQGKLNKRHAKWLEFIKTFPYVIKYKRGKENVVADALSRRYVLL 2414
            +EF+IHSDHESLK +++QGKLN+RHAKW+EFI++FPYVIK+K+GKEN++ADALSRRY LL
Sbjct: 1077 KEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLL 1136

Query: 2415 TSLQTKLLGFELIKDLYANDSDFSQVWNACAK-CAFGDFYRHEGFLFKKDKLCVPNCSVR 2591
              L  K+ G E IKD Y +D+DF  V   C     +  +   +GF+F+ +KLC+P  SVR
Sbjct: 1137 NQLDYKIFGLETIKDQYVHDADFKDVLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVR 1196

Query: 2592 ELLVRESHGGGLMGHFGVLKTLDILREHFYWPLIKHDVQSVCDKCITCRQAKSKIRPHGL 2771
             LL++E+HGGGLMGHFG  KT DIL  HF+WP ++ DV  +  +C TC++AKS++ PHGL
Sbjct: 1197 LLLLQEAHGGGLMGHFGAKKTEDILAGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGL 1256

Query: 2772 YTPLPVPNQPWTDISMDFVLGLPRTQNGKDSIFVVVDKFSKMSHFIACTKTNDATHIAEL 2951
            Y PLPVP+ PW DISMDFVLGLPRT+ G+DS+FVVVD+FSKM+HFI C KT+DATHIA+L
Sbjct: 1257 YLPLPVPSAPWEDISMDFVLGLPRTRKGRDSVFVVVDRFSKMAHFIPCHKTDDATHIADL 1316

Query: 2952 FFKEVVRLHGLPKSIVSDRDVKFLSYFWRTLWSKLGTKLLFSTVAHPQTDGQTEVVNRTL 3131
            FF+E+VRLHG+P +IVSDRD KFLS+FWRTLW+KLGTKLLFST  HPQTDGQTEVVNRTL
Sbjct: 1317 FFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1376

Query: 3132 TTLLRAIIQKNLKQWEKCLPHIEFAYNRTIHSTTSFSPFEIVYGFNPLTPVDILPLPTNE 3311
            +T+LRA+++KN+K WE CLPHIEFAYNR++HSTT   PF+IVYG  P  P+D++PLP++E
Sbjct: 1377 STMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSE 1436

Query: 3312 HANLDGKKKADFVKDLHAKVRANIDRKNEQYAKQANKGRLKVIFHPGDWVWVHLRKERFP 3491
              N D  ++A+ +  LH   + NI+R N +Y   ++KGR ++ F PGD VW+HLRKERFP
Sbjct: 1437 KLNFDATRRAELMLKLHETTKENIERMNARYKFASDKGRKEINFEPGDLVWLHLRKERFP 1496

Query: 3492 TQRKSKLQPRGDGPFQVLERIN 3557
              RKSKL PR DGPF+VLE+IN
Sbjct: 1497 ELRKSKLLPRADGPFKVLEKIN 1518


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score = 1404 bits (3634), Expect = 0.0
 Identities = 671/1133 (59%), Positives = 851/1133 (75%), Gaps = 10/1133 (0%)
 Frame = +3

Query: 189  KSRQIKCFRCQGFGHIASECPNKRVMVVLANGDIESASSSDNEMPPLEDCSDVEVEEPV- 365
            + R ++C RC+GFGH+  +CP+KRV+VV  +G+  SAS  D++   L      + E P  
Sbjct: 386  RMRDVQCHRCKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEE 445

Query: 366  --------HGDLLVTRRALSIQPKDEGDEEQREHIFHTRCHVKDKVCTLIIDSGSCTNVA 521
                    H + L+ +R LS Q  ++ ++ QR  +F T+C VK++ C +IID GSC N+A
Sbjct: 446  HIGAAFADHYESLIVQRVLSAQ-MEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLA 504

Query: 522  STLLVEKLNLKWQKLPKPYKLQWLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGH 701
            S+ +VEKL L  +  P PY +QWLN+ G+ KV K V + F+IG Y D V CDV PM A +
Sbjct: 505  SSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACN 564

Query: 702  ILLGRPWQFDRRVSHDGYKNCYSFVMNNRKIILAPLKPLQAYEDQVRIASECKKREKQRC 881
            ILLGRPWQFDR   H G  N YSF+ +++KI+L  + P     D V  A++ K    ++ 
Sbjct: 565  ILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHSMSPEDILRDDVAKAAKSKCESDKKA 624

Query: 882  EQKGEQSEQPEEKNKVLSVLVDKYDVKSVMIARPQVQVLMYKDVYFSTDDLNXXXXXXXX 1061
            +  G++ E    K K L  L  K D+  ++ +      L+ KD   S  D+         
Sbjct: 625  QSDGKKPETINLKPKCL--LATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVA 682

Query: 1062 XXXQDFEDLFPEEIPHGLPPLRGIEHQIDFIPGSAIPNRPAYRANPEKTKEIQRQVDELL 1241
               Q++ D+FP+E+P GLPP+RGIEHQID IPG+++PNR  YR NPE+TKEIQRQV ELL
Sbjct: 683  NILQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELL 742

Query: 1242 QKGFVRESLSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHHIPRLDDMFDELHGSR 1421
             KG+VRESLSPC+VPV+LVPKKDG+WRMCVDCRAIN IT++YRH IPRLDDM DEL GS 
Sbjct: 743  DKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSI 802

Query: 1422 LFSKIDLKNGYYQIRMKEGDEWKTAFKTRYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAF 1601
            +FSK+DL++GY+QIRMK GDEWKTAFKT++GLYEWLVMPFGLTNAPSTFMRLMN VLR F
Sbjct: 803  VFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPF 862

Query: 1602 MGKFVVVYFDDILVYSKNVDDHVKHLHAVFSVLREHQLYVNLKKYTFCMESVVFLGFVVS 1781
            +GKFVVVYFDDIL+YSK++ +H  HL AVF+ LR+ +L+ NL+K TFC + V FLG+VV+
Sbjct: 863  IGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVT 922

Query: 1782 SQGISVDEEKVRAIKDWPTPKNANEVRSFHGLASFYRRFVQDFSSIAAPLNELXXXXXXX 1961
             QGI VD+ KV AI+ WPTPK  ++VRSF GLA FYRRFVQDFS+IAAPLN L       
Sbjct: 923  PQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNVLTKKGVPF 982

Query: 1962 XXXXXHDQAFQTLKDKLTNAPLLCLPNFDKAFEIECDASGIGVGAVLMQDSKPIAYFSEK 2141
                  + AF  LKDKLT+APLL LP+F+K FE+ECDASGIG+G VL+Q+ KP+AYFSEK
Sbjct: 983  TWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEK 1042

Query: 2142 LSGAALNYPTYDKELYALVRTLRTWQHYLWPREFIIHSDHESLKFLKTQGKLNKRHAKWL 2321
            LSG  LNY TYDKELYALVRTL TWQHYLWP+EF+IHSDHESLK +++QGKLN+RHAKW+
Sbjct: 1043 LSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWV 1102

Query: 2322 EFIKTFPYVIKYKRGKENVVADALSRRYVLLTSLQTKLLGFELIKDLYANDSDFSQVWNA 2501
            EFI++FPYVIK+K+GKEN++ADALSRRY LLT L  K+ G E IKD YA+D+DF+ V   
Sbjct: 1103 EFIESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLH 1162

Query: 2502 CAK-CAFGDFYRHEGFLFKKDKLCVPNCSVRELLVRESHGGGLMGHFGVLKTLDILREHF 2678
            C     +  F  ++GF+F+ +KLC+P  SVR LL++E+HGGGLMGHFG  KT DIL  HF
Sbjct: 1163 CKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHF 1222

Query: 2679 YWPLIKHDVQSVCDKCITCRQAKSKIRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNGK 2858
            +WP ++ DV     +C TC++AKS++ PHGLY PLPVP  PW DISMDFVLGLPRT+ G+
Sbjct: 1223 FWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGR 1282

Query: 2859 DSIFVVVDKFSKMSHFIACTKTNDATHIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFWR 3038
            DSIFVVVD+FSKM+HFI C KT+DA+HIA+LFF+E+VRLHG+P +IVSDRD KFLS+FWR
Sbjct: 1283 DSIFVVVDRFSKMAHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWR 1342

Query: 3039 TLWSKLGTKLLFSTVAHPQTDGQTEVVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNRT 3218
            TLW+KLGTKLLFST  HPQTDGQTEVVNRTL+T+LRA+++KN+K WE+CLPHIEFAYNR+
Sbjct: 1343 TLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRS 1402

Query: 3219 IHSTTSFSPFEIVYGFNPLTPVDILPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNE 3398
            +HSTT   PF+IVYG  P  P+D++PLP++E  N D K++A+ +  LH   + NI+R N 
Sbjct: 1403 LHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNA 1462

Query: 3399 QYAKQANKGRLKVIFHPGDWVWVHLRKERFPTQRKSKLQPRGDGPFQVLERIN 3557
            +Y    +KGR ++ F PGD VW+HLRKERFP  RKSKL PR DGPF+VL +IN
Sbjct: 1463 KYKFAGDKGRRELTFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKIN 1515



 Score =  504 bits (1298), Expect = e-139
 Identities = 285/717 (39%), Positives = 409/717 (57%), Gaps = 36/717 (5%)
 Frame = +3

Query: 1509 YGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFMGKFVVVYFDDILVYSKNVDDHVKHLHAV 1688
            YGLYE+ VM FGLTNAP+ FM LMN V   ++ KFVVV+ DDILVYS++ +DH  HL  V
Sbjct: 1624 YGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLV 1683

Query: 1689 FSVLREHQLYVNLKKYTFCMESVVFLGFVVSSQGISVDEEKVRAIKDWPTPKNANEVRSF 1868
               LREHQLY  L K  F +  V FLG V+S++G++VD E V A+ DW  PK   ++RSF
Sbjct: 1684 LGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSF 1743

Query: 1869 HGLASFYRRFVQDFSSIAAPLNELXXXXXXXXXXXXHDQAFQTLKDKLTNAPLLCLPNFD 2048
             GLA +YRRF+++FS IA P+ +L             ++AFQTLK+KL ++P+L LP+  
Sbjct: 1744 LGLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTR 1803

Query: 2049 KAFEIECDASGIGVGAVLMQDSKPIAYFSEKLSGAALNYPTYDKELYALVRTLRTWQHYL 2228
            K F + CDAS  G+G VLMQ+   +AY S +L     NYPT+D EL A+V  L+ W+HYL
Sbjct: 1804 KDFMVYCDASPQGLGCVLMQEGHVVAYASRQLWPHEGNYPTHDLELAAVVHALKIWRHYL 1863

Query: 2229 WPREFIIHSDHESLKFLKTQGKLNKRHAKWLEFIKTFPYVIKYKRGKENVVADALSRR-- 2402
                  I++DH+SLK++ TQ  LN R  +WLE IK +   I Y  GK NVVADALSR+  
Sbjct: 1864 IGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKSH 1923

Query: 2403 --------------------------YVLLTSLQTKLLGFELIKDLYANDSDFSQVWNAC 2504
                                         L +L+ K    + I++   ND D   +    
Sbjct: 1924 CNTLGVRGIPPELNQQMEALNLSIVSRGFLATLEAKPTLLDQIREAQKNDPDMRGLLKNM 1983

Query: 2505 AKCAFGDFYRHE-GFLFKKDKLCVPNC-SVRELLVRESHGGGLMGHFGVLKTLDILREHF 2678
             +     F   E G L+ ++++CVP+   +++L+++E+H      H G  K    L+E +
Sbjct: 1984 KQGKAAGFIEDEHGTLWNRNRVCVPDVRELKQLILQEAHESPYSIHPGSTKMYLDLKEKY 2043

Query: 2679 YWPLIKHDVQSVCDKCITCRQAKSK-IRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNG 2855
            +W  +K ++      C  C++ K++  RP GL  PL VP   W +I MDF+ GLP+TQ G
Sbjct: 2044 WWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGG 2103

Query: 2856 KDSIFVVVDKFSKMSHFIACTKTNDATHIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFW 3035
             DSI+VVVD+ +K++ FI    T     +AEL+F  +V LHG+PK IVSDR+ +F S+FW
Sbjct: 2104 YDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRESQFTSHFW 2163

Query: 3036 RTLWSKLGTKLLFSTVAHPQTDGQTEVVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNR 3215
            + L  +LGT+L FST  HPQTDGQTE +N+ L  +L A +    K W+K LP+ EF+YN 
Sbjct: 2164 KKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLHACVLDFGKTWDKSLPYAEFSYNN 2223

Query: 3216 TIHSTTSFSPFEIVYGFNPLTPVDILPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKN 3395
            +  ++   +P+E +YG    TP+        +          D +++  AKVR   D   
Sbjct: 2224 SYQASIQMAPYEALYGRKCRTPL------LWDQVGESQVFGTDILREAEAKVRTIWDNLK 2277

Query: 3396 EQYAKQ---ANKGRLKVIFHPGDWVWVHLRKER--FPTQRKSKLQPRGDGPFQVLER 3551
               ++Q   A+  R  + F   D+V++ +   R     Q K KL PR  GPF+++ R
Sbjct: 2278 VAQSRQKSYADNRRRNLEFAVDDFVYLRVTPLRGVHRFQTKGKLAPRFVGPFRIIAR 2334


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score = 1388 bits (3593), Expect = 0.0
 Identities = 679/1193 (56%), Positives = 857/1193 (71%), Gaps = 30/1193 (2%)
 Frame = +3

Query: 69   NNPWRPNWKDNK-IPFKPKEDAKSKPLISIPKDRPETKSLIKSRQIKCFRCQGFGHIASE 245
            NN  RP+  ++   P +P     + P     K      S  ++R I+C RC+G+GH+  +
Sbjct: 356  NNKLRPSTTNSTPCPSEPTRGVAATP----SKSSSSVASSGRTRDIQCLRCKGYGHVRKD 411

Query: 246  CPNKRVMVVLANGDIESASSSDNEM-------------PPLEDCSDVEVEEPVHGDLLVT 386
            CP+ RVM+V A+G   SAS  D E               P +D   +  E   H + LV 
Sbjct: 412  CPSTRVMIVRADGGYSSASDLDEETYALLATNNAGKGDAPHQDEEHIGAEAAEHYESLVV 471

Query: 387  RRALSIQPKDEGDEEQREHIFHTRCHVKDKVCTLIIDSGSCTNVASTLLVEKLNLKWQKL 566
            +R LS Q  +  ++ QR  +F T+C +K++ C +IID GSC N+AS  +VEKL L  Q  
Sbjct: 472  QRVLSAQ-MERAEQNQRHTLFQTKCVIKERSCRVIIDRGSCNNLASAEMVEKLALSTQPH 530

Query: 567  PKPYKLQWLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWQFDRRVSH 746
            P+PY +QWLN  G+VKV + VRV F+IG Y D + CDV PM A  I LGRPWQFD+   H
Sbjct: 531  PQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSIFLGRPWQFDKDSLH 590

Query: 747  DGYKNCYSFVMNNRKIILAPLKPLQAYEDQVRIASECKKREKQRCEQ------------- 887
             G  N YSFV N +K++L P+ P    +D++  AS+ K +E  R E              
Sbjct: 591  FGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEHTRSEHLIAANELEKHKKK 650

Query: 888  --KGEQSEQPEEKNKVLSVLVDKYDVKSVMIARPQVQVLMYKDVYFSTDDLNXXXXXXXX 1061
                 Q+ + E K K    +  K D+  V         L+ K+  F  +D          
Sbjct: 651  PTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVT 710

Query: 1062 XXXQDFEDLFPEEIPHGLPPLRGIEHQIDFIPGSAIPNRPAYRANPEKTKEIQRQVDELL 1241
               Q++ D+FP+E+P GLPP+RGIEHQID IPG+++PNR  YR NPE+TKEIQRQV ELL
Sbjct: 711  NLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELL 770

Query: 1242 QKGFVRESLSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHHIPRLDDMFDELHGSR 1421
             KG+VRESLSPCS+PVLLVPKKDG+WRMCVDCRAIN IT++YRH IPRLDDM DEL GS 
Sbjct: 771  DKGYVRESLSPCSIPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSL 830

Query: 1422 LFSKIDLKNGYYQIRMKEGDEWKTAFKTRYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAF 1601
            +FSKIDL++GY+QIRMK GDEWKTAFKT++GLYEWLVMPFGLTNAPSTF+RLMN VLRAF
Sbjct: 831  VFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFIRLMNEVLRAF 890

Query: 1602 MGKFVVVYFDDILVYSKNVDDHVKHLHAVFSVLREHQLYVNLKKYTFCMESVVFLGFVVS 1781
            +G+FVVVYFDDIL+YS++++DH  HL AVF  LR+ +L+ NL+K TFC + V FLG+VV+
Sbjct: 891  IGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDERLFGNLEKCTFCTDRVSFLGYVVT 950

Query: 1782 SQGISVDEEKVRAIKDWPTPKNANEVRSFHGLASFYRRFVQDFSSIAAPLNELXXXXXXX 1961
             QGI VD+ KV AI  WP P    +VRSF GLA FYRRFV+DFS+IAAPL+EL       
Sbjct: 951  PQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTF 1010

Query: 1962 XXXXXHDQAFQTLKDKLTNAPLLCLPNFDKAFEIECDASGIGVGAVLMQDSKPIAYFSEK 2141
                    AF TLKDKLT+APLL LP+F+K FE+ECDASGIG+G VL+Q+ KPI YFSEK
Sbjct: 1011 TWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPIEYFSEK 1070

Query: 2142 LSGAALNYPTYDKELYALVRTLRTWQHYLWPREFIIHSDHESLKFLKTQGKLNKRHAKWL 2321
            LSG +LNY TYDKEL+ALVRTL TWQHYLWP+EF+IHSDHESLK +++Q KLN+RHAKW+
Sbjct: 1071 LSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWV 1130

Query: 2322 EFIKTFPYVIKYKRGKENVVADALSRRYVLLTSLQTKLLGFELIKDLYANDSDFSQVWNA 2501
            EFI++FPYVIK+K+GKENV+ADALSRRY +L+ L  K+ G E IK+ YA+D DF  V   
Sbjct: 1131 EFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLN 1190

Query: 2502 CAK-CAFGDFYRHEGFLFKKDKLCVPNCSVRELLVRESHGGGLMGHFGVLKTLDILREHF 2678
            C +   +  F    GF+F+ +KLC+P  SVR LL++E+HGGGLMGHFGV KT DIL +HF
Sbjct: 1191 CKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHF 1250

Query: 2679 YWPLIKHDVQSVCDKCITCRQAKSKIRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNGK 2858
            +WP ++ DV+    +C TC++AK ++ PHGLY PLPVP+ PW DISMDFVLGLPRT+ G+
Sbjct: 1251 FWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGR 1310

Query: 2859 DSIFVVVDKFSKMSHFIACTKTNDATHIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFWR 3038
            DSIFVVVD+FSKM+HFI C K++DATH+A+LFF+E+VRLHG+P +IVSDRD KFLS+FWR
Sbjct: 1311 DSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWR 1370

Query: 3039 TLWSKLGTKLLFSTVAHPQTDGQTEVVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNRT 3218
            TLW+KLGTKLLFST  HPQTDGQTEVVNRTL+T+LRA+++KN+K WE+CLPH+EFAYNR+
Sbjct: 1371 TLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRS 1430

Query: 3219 IHSTTSFSPFEIVYGFNPLTPVDILPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNE 3398
             HSTT   PFEIVYG  P  P+D+LPLPT+E  N D K  A+ +  LH   + NI+R N 
Sbjct: 1431 QHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYHAELMLKLHETTKENIERMNI 1490

Query: 3399 QYAKQANKGRLKVIFHPGDWVWVHLRKERFPTQRKSKLQPRGDGPFQVLERIN 3557
            +Y    +KG+  V F PGD VW+HLRK+RFP  RKSKL PR DGPF+VL++IN
Sbjct: 1491 KYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKIN 1543


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score = 1385 bits (3584), Expect = 0.0
 Identities = 678/1193 (56%), Positives = 858/1193 (71%), Gaps = 30/1193 (2%)
 Frame = +3

Query: 69   NNPWRPNWKDNK-IPFKPKEDAKSKPLISIPKDRPETKSLIKSRQIKCFRCQGFGHIASE 245
            +N  RP+  ++   P +P     + P     K      S  ++R I+C RC+G+GH+  +
Sbjct: 356  SNKLRPSTTNSTPCPSEPTRGVAATP----SKTSSSVASSGRTRDIQCLRCKGYGHVRKD 411

Query: 246  CPNKRVMVVLANGDIESASSSDNEM-------------PPLEDCSDVEVEEPVHGDLLVT 386
            CP+ RVM+V A+G   SAS  D E               P +D   +  E   H + LV 
Sbjct: 412  CPSTRVMIVRADGGYSSASDLDGETYALLATNNAREGDAPHQDEEHIGAEAAEHYESLVV 471

Query: 387  RRALSIQPKDEGDEEQREHIFHTRCHVKDKVCTLIIDSGSCTNVASTLLVEKLNLKWQKL 566
            +R LS Q  +  ++ QR  +F T+C +K++ C +IID GSC N+AS  +VEKL L  Q  
Sbjct: 472  QRVLSAQ-MERAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLALSTQPH 530

Query: 567  PKPYKLQWLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWQFDRRVSH 746
            P+PY +QWLN  G+VKV + VRV F+IG Y D + CDV PM A  +LLGRPWQFD+   H
Sbjct: 531  PQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSMLLGRPWQFDKDSLH 590

Query: 747  DGYKNCYSFVMNNRKIILAPLKPLQAYEDQVRIASECKKREKQRCEQ------------- 887
             G  N YSFV N +K++L P+ P    +D++  AS+ K +E  R E              
Sbjct: 591  FGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEHTRSEHLIAANELEKHKKK 650

Query: 888  --KGEQSEQPEEKNKVLSVLVDKYDVKSVMIARPQVQVLMYKDVYFSTDDLNXXXXXXXX 1061
                 Q+ + E K K    +  K D+  V         L+ K+  F  +D          
Sbjct: 651  PTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVT 710

Query: 1062 XXXQDFEDLFPEEIPHGLPPLRGIEHQIDFIPGSAIPNRPAYRANPEKTKEIQRQVDELL 1241
               Q++ D+FP+E+P GLPP+RGIEHQID IPG+++PNR  YR NPE+TKEIQRQV ELL
Sbjct: 711  NLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELL 770

Query: 1242 QKGFVRESLSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHHIPRLDDMFDELHGSR 1421
             KG+VRESLSPCSVPVLLVPKKDG+WRMCVDCRAIN IT++YRH IPRLDDM DEL GS 
Sbjct: 771  DKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSL 830

Query: 1422 LFSKIDLKNGYYQIRMKEGDEWKTAFKTRYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAF 1601
            +FSKIDL++GY+QIRMK GDEWKTAFKT++GLYEWLVMPFGLTNAPSTFMRLMN VLRAF
Sbjct: 831  VFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAF 890

Query: 1602 MGKFVVVYFDDILVYSKNVDDHVKHLHAVFSVLREHQLYVNLKKYTFCMESVVFLGFVVS 1781
            +G+FVVVYFDDIL+YS++++DH  HL AVF  LR+ +L+ NL+K TFC + V FL +VV+
Sbjct: 891  IGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLSYVVT 950

Query: 1782 SQGISVDEEKVRAIKDWPTPKNANEVRSFHGLASFYRRFVQDFSSIAAPLNELXXXXXXX 1961
             QGI VD+ KV AI +WP P    +VRSF GLA FYRRFV+DFS+IAAPL+EL       
Sbjct: 951  PQGIEVDQAKVEAIHNWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTF 1010

Query: 1962 XXXXXHDQAFQTLKDKLTNAPLLCLPNFDKAFEIECDASGIGVGAVLMQDSKPIAYFSEK 2141
                    AF TLKDKLT+APLL LP+F+K FE ECDASGIG+G VL+Q+ KP+AYFSEK
Sbjct: 1011 TWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFEHECDASGIGLGGVLLQEGKPVAYFSEK 1070

Query: 2142 LSGAALNYPTYDKELYALVRTLRTWQHYLWPREFIIHSDHESLKFLKTQGKLNKRHAKWL 2321
            LSG +LNY TYDKEL+ALVRTL TWQHYLWP+EF+IHSDHESLK +++Q KLN+RHAKW+
Sbjct: 1071 LSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWV 1130

Query: 2322 EFIKTFPYVIKYKRGKENVVADALSRRYVLLTSLQTKLLGFELIKDLYANDSDFSQVWNA 2501
            EFI++FPYVIK+K+GKENV+ADALSRRY +L+ L  K+ G E IK+ YA+D DF  V   
Sbjct: 1131 EFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKNVLLN 1190

Query: 2502 CAK-CAFGDFYRHEGFLFKKDKLCVPNCSVRELLVRESHGGGLMGHFGVLKTLDILREHF 2678
            C +   +  F    GF+F+ +KLC+P  SVR LL++E+HGGGLMGHFGV KT DIL +HF
Sbjct: 1191 CKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHF 1250

Query: 2679 YWPLIKHDVQSVCDKCITCRQAKSKIRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNGK 2858
            +WP ++ DV+    +C TC++AKS++ PHGLY PLPVP+ PW DISMDFVLGLPRT+ G+
Sbjct: 1251 FWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGR 1310

Query: 2859 DSIFVVVDKFSKMSHFIACTKTNDATHIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFWR 3038
            DSIFVVVD+FSKM+HFI C K++DATH+A+LFF+E+VRLHG+P +IVSDRD KFLS+FWR
Sbjct: 1311 DSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWR 1370

Query: 3039 TLWSKLGTKLLFSTVAHPQTDGQTEVVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNRT 3218
            TLW+KLGTK LFST  HPQTDGQTEVVNRTL+T+LRA+++KN+K WE+CLPH+EFAYNR+
Sbjct: 1371 TLWAKLGTKFLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRS 1430

Query: 3219 IHSTTSFSPFEIVYGFNPLTPVDILPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNE 3398
             HSTT   PFEIVYG  P  P+D+LP PT+E  N D K +A+ +  LH   + NI+R N 
Sbjct: 1431 QHSTTKKCPFEIVYGLLPRAPIDLLPHPTSERVNFDAKYRAELMLKLHETTKENIERMNI 1490

Query: 3399 QYAKQANKGRLKVIFHPGDWVWVHLRKERFPTQRKSKLQPRGDGPFQVLERIN 3557
            +Y    +KG+  V F PGD VW+HLRK+RFP  RKSKL PR DGPF+VL++IN
Sbjct: 1491 KYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKIN 1543


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score = 1379 bits (3570), Expect = 0.0
 Identities = 662/1133 (58%), Positives = 843/1133 (74%), Gaps = 10/1133 (0%)
 Frame = +3

Query: 189  KSRQIKCFRCQGFGHIASECPNKRVMVVLANGDIESASSSDNEMPPLEDCSDVEVEEPV- 365
            + R ++C RC+GFGH+  +CP+KRV+VV  +G+  SAS  D++   L      + E P  
Sbjct: 365  RMRDVQCHRCKGFGHVQRDCPSKRVLVVKNDGEYSSASDFDDDTLALLAADHADNEPPEE 424

Query: 366  --------HGDLLVTRRALSIQPKDEGDEEQREHIFHTRCHVKDKVCTLIIDSGSCTNVA 521
                    H + L+ +R LS Q  ++ ++ QR  +F T+C VK++ C +IID GSC N+A
Sbjct: 425  HIGAAFADHYESLIVQRVLSAQ-MEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLA 483

Query: 522  STLLVEKLNLKWQKLPKPYKLQWLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGH 701
            S+ +VEKL L  +  P  Y +QWLN+ G+ KV K V + F+IG Y D V CDV PM A +
Sbjct: 484  SSEMVEKLALSTKPHPHSYYIQWLNNSGKAKVTKLVHINFAIGNYHDVVECDVVPMQACN 543

Query: 702  ILLGRPWQFDRRVSHDGYKNCYSFVMNNRKIILAPLKPLQAYEDQVRIASECKKREKQRC 881
            ILLGRPWQFDR   H G  N YSF+ +++KI+L P+ P     D V  A++ K    ++ 
Sbjct: 544  ILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHPMSPEDILRDDVAKAAKSKCESDKKA 603

Query: 882  EQKGEQSEQPEEKNKVLSVLVDKYDVKSVMIARPQVQVLMYKDVYFSTDDLNXXXXXXXX 1061
            +  G++ E    K K L  L  K D+  ++ +      L+ KD   S  D+         
Sbjct: 604  QSDGKKPETINLKPKCL--LATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVA 661

Query: 1062 XXXQDFEDLFPEEIPHGLPPLRGIEHQIDFIPGSAIPNRPAYRANPEKTKEIQRQVDELL 1241
               Q++ D+FP+E+P GLPP+RGIEHQID IPG+++PNR  YR NPE+TKEIQRQV ELL
Sbjct: 662  NILQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELL 721

Query: 1242 QKGFVRESLSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHHIPRLDDMFDELHGSR 1421
             KG+VRESLSPC+VPV+LVPKKDG+WRMCVDCRAIN IT++YRH IPRLDDM DEL GS 
Sbjct: 722  DKGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSI 781

Query: 1422 LFSKIDLKNGYYQIRMKEGDEWKTAFKTRYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAF 1601
            +FSK++L++GY+QI MK GDEWKTAFKT++GLYEWLVMPFGLTNAPSTFMRLMN VLR F
Sbjct: 782  VFSKVELRSGYHQIHMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPF 841

Query: 1602 MGKFVVVYFDDILVYSKNVDDHVKHLHAVFSVLREHQLYVNLKKYTFCMESVVFLGFVVS 1781
            +GKFVVVYFDDIL+YSK++ +H  HL AVF+ LR+ +L+ NL+K TFC + V FLG+VV+
Sbjct: 842  IGKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVT 901

Query: 1782 SQGISVDEEKVRAIKDWPTPKNANEVRSFHGLASFYRRFVQDFSSIAAPLNELXXXXXXX 1961
             QGI VD+ KV AI+ WPTPK  ++VRSF GLA FY RFVQDFS+IAAPLN L       
Sbjct: 902  PQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYCRFVQDFSTIAAPLNALTKKGVPF 961

Query: 1962 XXXXXHDQAFQTLKDKLTNAPLLCLPNFDKAFEIECDASGIGVGAVLMQDSKPIAYFSEK 2141
                  + AF  LK KLT+APLL LP+F+K FE+ECDASGIG+G VL+Q+ K +AYFSEK
Sbjct: 962  TWGTSQENAFHMLKHKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKLVAYFSEK 1021

Query: 2142 LSGAALNYPTYDKELYALVRTLRTWQHYLWPREFIIHSDHESLKFLKTQGKLNKRHAKWL 2321
            LSG  LNY TYDKELYALVRTL TWQHYLWP+EF+IHSDHESLK +++QGKLN+RHAKW+
Sbjct: 1022 LSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWV 1081

Query: 2322 EFIKTFPYVIKYKRGKENVVADALSRRYVLLTSLQTKLLGFELIKDLYANDSDFSQVWNA 2501
            EFI++FPYVIK+K+GKEN++A+ALSRRY LLT L  K+ G E IKD YA+D+DF+ V   
Sbjct: 1082 EFIESFPYVIKHKKGKENIIANALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLH 1141

Query: 2502 CAK-CAFGDFYRHEGFLFKKDKLCVPNCSVRELLVRESHGGGLMGHFGVLKTLDILREHF 2678
            C     +  F  ++GF+F+ +KLC+P  SVR LL++E+HGGGLMGHFG  KT DIL  HF
Sbjct: 1142 CKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHF 1201

Query: 2679 YWPLIKHDVQSVCDKCITCRQAKSKIRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNGK 2858
            +WP ++ DV     +C TC++AKS++ PHGLY PLPVP  PW DISMDFVLGLPRT+ G+
Sbjct: 1202 FWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGR 1261

Query: 2859 DSIFVVVDKFSKMSHFIACTKTNDATHIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFWR 3038
            DSIFVVVD+FSKM HFI C KT+DA+HIA+LFF+E+VRLHG+P +IVSDRD KFLS+FWR
Sbjct: 1262 DSIFVVVDRFSKMVHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWR 1321

Query: 3039 TLWSKLGTKLLFSTVAHPQTDGQTEVVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNRT 3218
            TLW+KLGTKLLFST  HPQTDGQ EVVNRTL+T+LRA+++KN+K WE+CLPHIEFA NR+
Sbjct: 1322 TLWAKLGTKLLFSTTCHPQTDGQIEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFACNRS 1381

Query: 3219 IHSTTSFSPFEIVYGFNPLTPVDILPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNE 3398
            +HSTT   PF+IVY   P  P+D++PLP++E  N D K++A+ +  LH   + NI+R N 
Sbjct: 1382 LHSTTKMCPFQIVYSLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNA 1441

Query: 3399 QYAKQANKGRLKVIFHPGDWVWVHLRKERFPTQRKSKLQPRGDGPFQVLERIN 3557
            +Y    +KGR ++ F PGD VW+HLRKERFP  RKSKL PR DGPF+VL +IN
Sbjct: 1442 KYKFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKIN 1494


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score = 1377 bits (3563), Expect = 0.0
 Identities = 678/1193 (56%), Positives = 858/1193 (71%), Gaps = 30/1193 (2%)
 Frame = +3

Query: 69   NNPWRPNWKDNK-IPFKPKEDAKSKPLISIPKDRPETKSLIKSRQIKCFRCQGFGHIASE 245
            +N  RP+  ++   P +P     + P     K      S  ++R I+C RC+G+GH+  +
Sbjct: 356  SNKLRPSTTNSTPCPSEPTRGVAATP----SKSSSSVASSGRTRDIQCLRCKGYGHVRKD 411

Query: 246  CPNKRVMVVLANGDIESASSSDNEM-------------PPLEDCSDVEVEEPVHGDLLVT 386
            CP+ RVM+V A+G     S  D E               P +D   +  E   H + LV 
Sbjct: 412  CPSTRVMIVRADGGYYFDSDLDEETYALLATNNAGEGDAPHQDEEHIRAEAAEHYESLVV 471

Query: 387  RRALSIQPKDEGDEEQREHIFHTRCHVKDKVCTLIIDSGSCTNVASTLLVEKLNLKWQKL 566
            +R LS Q  +  ++ Q   +F T+C +K++ C +IID GSC N+AS  +VEKL L  Q  
Sbjct: 472  QRVLSAQ-MERAEQNQLHTLFQTKCVIKERSCHVIIDGGSCNNLASAEMVEKLALSTQPH 530

Query: 567  PKPYKLQWLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHAGHILLGRPWQFDRRVSH 746
            P+PY +QWLN  G+VKV + VRV F+IG Y D + CDV PM A  +LLGRPWQFD+   H
Sbjct: 531  PQPYYIQWLNSSGKVKVTRLVRVHFAIGSYHDSINCDVVPMQACSMLLGRPWQFDKDSLH 590

Query: 747  DGYKNCYSFVMNNRKIILAPLKPLQAYEDQVRIASECKKREKQRCEQKGEQSEQPEEKNK 926
             G  N YSFV N +K++L P+ P    +D++  AS+ K +E  R E     +E  + K K
Sbjct: 591  FGKSNQYSFVHNGKKLVLHPMSPEVILKDELARASKQKNQEHTRSEHLIAANELEKHKKK 650

Query: 927  VL-SVLVDKYDVK---SVMIARPQ-----------VQVLMYKDVYFSTDDLNXXXXXXXX 1061
               SV  +K ++K   S  IA                 L+ K+  F  +D          
Sbjct: 651  PTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVFCYALVCKETLFPIEDTPISLRPPVT 710

Query: 1062 XXXQDFEDLFPEEIPHGLPPLRGIEHQIDFIPGSAIPNRPAYRANPEKTKEIQRQVDELL 1241
               Q++ D+FP+E+P GLPP+RGIEHQID IPG+++PNR  YR NPE+TKEIQRQV ELL
Sbjct: 711  NLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELL 770

Query: 1242 QKGFVRESLSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHHIPRLDDMFDELHGSR 1421
             KG+VRESLSPCSVPVLLVPKKDG+WRMCVDCRAIN IT++YRH IPRLDDM DEL GS 
Sbjct: 771  DKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSL 830

Query: 1422 LFSKIDLKNGYYQIRMKEGDEWKTAFKTRYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAF 1601
            +FSKIDL++GY+QIRMK GDEWKTAFKT++GLYEWLVMPFGLTNAPSTFMRLMN VLRAF
Sbjct: 831  VFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAF 890

Query: 1602 MGKFVVVYFDDILVYSKNVDDHVKHLHAVFSVLREHQLYVNLKKYTFCMESVVFLGFVVS 1781
            +G+FVVVYFDDIL+YS++++DH  HL AVF  LR+ +L+ NL+K TFC + V FLG+VV+
Sbjct: 891  IGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVT 950

Query: 1782 SQGISVDEEKVRAIKDWPTPKNANEVRSFHGLASFYRRFVQDFSSIAAPLNELXXXXXXX 1961
             QGI VD+ KV AI  WP P    +VRSF GLA FYRRFV+DFS+IAAPL+EL       
Sbjct: 951  PQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTF 1010

Query: 1962 XXXXXHDQAFQTLKDKLTNAPLLCLPNFDKAFEIECDASGIGVGAVLMQDSKPIAYFSEK 2141
                    AF TLKDKLT+APLL LP+F+K FE+ECDASGIG+G VL+Q+ KP+AYFSEK
Sbjct: 1011 TWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEK 1070

Query: 2142 LSGAALNYPTYDKELYALVRTLRTWQHYLWPREFIIHSDHESLKFLKTQGKLNKRHAKWL 2321
            LSG +LNY TYDKEL+ALVRTL TWQHYLWP+EF+IHSDHESLK +++Q K N+RHAKW+
Sbjct: 1071 LSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKHNRRHAKWV 1130

Query: 2322 EFIKTFPYVIKYKRGKENVVADALSRRYVLLTSLQTKLLGFELIKDLYANDSDFSQVWNA 2501
            EFI++FPYVIK+K+GKENV+ADALSRRY +L+ L  K+ G E IK+ YA+D DF  V   
Sbjct: 1131 EFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLN 1190

Query: 2502 CAK-CAFGDFYRHEGFLFKKDKLCVPNCSVRELLVRESHGGGLMGHFGVLKTLDILREHF 2678
            C +   +  F    GF+F+ +KLC+P  SV  LL++E+HGGGLMGHFGV K  DIL +HF
Sbjct: 1191 CKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFGVKKMEDILADHF 1250

Query: 2679 YWPLIKHDVQSVCDKCITCRQAKSKIRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNGK 2858
            +WP  + DV+    +C TC++AKS++ PHGLY PLPVP+ PW DISMDFVLGLPRT+ G+
Sbjct: 1251 FWPKKRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGR 1310

Query: 2859 DSIFVVVDKFSKMSHFIACTKTNDATHIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFWR 3038
            DSIFVVVD+FSKM+HFI C K++DATH+A+LFF+E+VRLHG+P +IVSDRD KFLS+FWR
Sbjct: 1311 DSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWR 1370

Query: 3039 TLWSKLGTKLLFSTVAHPQTDGQTEVVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNRT 3218
            TLW+KLGTKLLFST  HPQTDGQTEVVNRTL+T+LRA+++KN+K WE+CLPH+EFAYNR+
Sbjct: 1371 TLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRS 1430

Query: 3219 IHSTTSFSPFEIVYGFNPLTPVDILPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNE 3398
             HSTT   PFEIVYG  P  P+D+LPLPT+E  N D K +A+ +  LH   + NI+R N 
Sbjct: 1431 QHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYRAELMLKLHETTKENIERMNI 1490

Query: 3399 QYAKQANKGRLKVIFHPGDWVWVHLRKERFPTQRKSKLQPRGDGPFQVLERIN 3557
            +Y    +KG+  V F PGD VW+HLRK+RFP  RKSKL PR DGPF+VL++IN
Sbjct: 1491 KYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKIN 1543


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score = 1369 bits (3544), Expect = 0.0
 Identities = 668/1170 (57%), Positives = 850/1170 (72%), Gaps = 27/1170 (2%)
 Frame = +3

Query: 129  AKSKPLISIPKDRPETKSLIKSRQIKCFRCQGFGHIASECPNKRVMVVLANGDIESASSS 308
            AKS P            S  ++  I C RC+G GH A ECP+KRVM+V  +G  ESAS  
Sbjct: 391  AKSTPSGPAKSSSSSMASTGQTHDIICRRCKGGGHYARECPSKRVMIVSEDGGYESASDY 450

Query: 309  DNEMPPL-------EDCSDVEV-----EEPVHGDLLVTRRALSIQPKDEGDEEQREHIFH 452
            D E   L        D SD E      E+    + LV +R LS+Q   + ++ QR ++FH
Sbjct: 451  DEETLALITRDKHGGDDSDHETQYMAPEDADRYECLVAQRVLSVQVT-QAEQNQRHNLFH 509

Query: 453  TRCHVKDKVCTLIIDSGSCTNVASTLLVEKLNLKWQKLPKPYKLQWLNDCGEVKVNKQVR 632
            T+  VK++   +IID GSC N+AS  +VEKL+L  +  P PY +QW N+ G+VKV + VR
Sbjct: 510  TKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLITRPHPHPYYIQWFNNSGKVKVTRTVR 569

Query: 633  VPFSIGKYVDEVICDVAPMHAGHILLGRPWQFDRRVSHDGYKNCYSFVMNNRKIILAPLK 812
            V FSI  Y D V CDV PM A  +LLGRPWQFD+   H   KN Y+ V  ++ I L P+ 
Sbjct: 570  VHFSISTYADYVDCDVVPMQACSLLLGRPWQFDKNSVHHDRKNLYTLVHKDKNITLLPMT 629

Query: 813  PLQAYEDQVRIASECK----KREKQRCEQKGEQSEQP----------EEKNKVLSVLVDK 950
            P    +D +  A++ K    K E Q   ++ EQ  Q           E K K   +L  K
Sbjct: 630  PESILKDDINRANKAKQEKNKSENQIVAKEFEQQMQSNNNKQSSVACEIKLKSACLLATK 689

Query: 951  YDVKSVMIARPQVQVLMYKDVYFSTDDLNXXXXXXXXXXXQDFEDLFPEEIPHGLPPLRG 1130
             D+  +  ++      + K+  FS +D+            Q+F D+FP+++P GLPP+RG
Sbjct: 690  SDIDDLDFSKSVCYAFVCKEALFSFEDVPSSLPPAVTNILQEFTDVFPQDVPPGLPPIRG 749

Query: 1131 IEHQIDFIPGSAIPNRPAYRANPEKTKEIQRQVDELLQKGFVRESLSPCSVPVLLVPKKD 1310
            IEHQID IPG+++PNR  YR NPE+TKEI RQV ELL KG++RESLSPC+VP++LVPKKD
Sbjct: 750  IEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKD 809

Query: 1311 GTWRMCVDCRAINKITVKYRHHIPRLDDMFDELHGSRLFSKIDLKNGYYQIRMKEGDEWK 1490
            GT RMCVDCR IN IT++YRH IPRLDDM DEL GS +FSK+DL++GY+QIRMK GDEWK
Sbjct: 810  GTSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSTIFSKVDLRSGYHQIRMKLGDEWK 869

Query: 1491 TAFKTRYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFMGKFVVVYFDDILVYSKNVDDHV 1670
            T FKT++GLYEWLVMPFGLTNAPSTFMRLMN VLRAF+G+FVVVYFDDIL+YSK++++H+
Sbjct: 870  TTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSKSLEEHL 929

Query: 1671 KHLHAVFSVLREHQLYVNLKKYTFCMESVVFLGFVVSSQGISVDEEKVRAIKDWPTPKNA 1850
            +HL AVF  LR+ +L+ NL K TFC + V FLG+VV+ QGI VD+ K+ AI+ WP PK  
Sbjct: 930  EHLRAVFIALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPHPKTV 989

Query: 1851 NEVRSFHGLASFYRRFVQDFSSIAAPLNELXXXXXXXXXXXXHDQAFQTLKDKLTNAPLL 2030
             +VRSF GLA FYRRFV+DFS+IAAPLNE+             ++AF  LKDKLT APLL
Sbjct: 990  TQVRSFLGLAGFYRRFVRDFSTIAAPLNEVTKKDVPFVWGTAQEEAFTVLKDKLTYAPLL 1049

Query: 2031 CLPNFDKAFEIECDASGIGVGAVLMQDSKPIAYFSEKLSGAALNYPTYDKELYALVRTLR 2210
             LPNF+K FE+ECDASGIG+G VL+QD KP+AYFSEK SG +LNY TYDKELYALVRTL 
Sbjct: 1050 QLPNFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKFSGPSLNYSTYDKELYALVRTLE 1109

Query: 2211 TWQHYLWPREFIIHSDHESLKFLKTQGKLNKRHAKWLEFIKTFPYVIKYKRGKENVVADA 2390
            TWQHYLWP+EF+IHSDHESLK +K+Q KLN+RHAKW+EFI+TFPYVIK+K+GKENV+ADA
Sbjct: 1110 TWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKHKKGKENVIADA 1169

Query: 2391 LSRRYVLLTSLQTKLLGFELIKDLYANDSDFSQVWNACAK-CAFGDFYRHEGFLFKKDKL 2567
            LSRRY +L+ L  K+ G E IKD Y +D++F  V   C +   +  F  ++GF+F+ +KL
Sbjct: 1170 LSRRYTMLSQLDFKIFGLETIKDQYVHDAEFKDVLQNCKEGRTWNKFVLNDGFVFRANKL 1229

Query: 2568 CVPNCSVRELLVRESHGGGLMGHFGVLKTLDILREHFYWPLIKHDVQSVCDKCITCRQAK 2747
            C+P  SVR LL++E+HGGGLMGHFGV KT DIL  HF+WP ++ DV+    +C TC++AK
Sbjct: 1230 CIPASSVRLLLLQEAHGGGLMGHFGVKKTEDILATHFFWPKMRRDVERFVARCTTCQRAK 1289

Query: 2748 SKIRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNGKDSIFVVVDKFSKMSHFIACTKTN 2927
            S++ PHGLY PLPVP+ PW DISMDFVLGLPRT+ G+DSIFVVVD+FSKM+HFI C K++
Sbjct: 1290 SRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSD 1349

Query: 2928 DATHIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFWRTLWSKLGTKLLFSTVAHPQTDGQ 3107
            DA ++A+LFF+E++RLHG+P +IVSDRD KFLS+FWR LW+KLG KLLFST  HPQTDGQ
Sbjct: 1350 DAVNVADLFFREIIRLHGVPNTIVSDRDTKFLSHFWRCLWAKLGNKLLFSTTCHPQTDGQ 1409

Query: 3108 TEVVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNRTIHSTTSFSPFEIVYGFNPLTPVD 3287
            TEVVNRTL+T+LRA+++ N K WE+CLPHIEFAYNR++HSTT   PFEIVYGF P  P+D
Sbjct: 1410 TEVVNRTLSTMLRAVLKNNKKMWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPID 1469

Query: 3288 ILPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNEQYAKQANKGRLKVIFHPGDWVWV 3467
            +LPLP++E  N D K++++ +  +H   + NI+R N +Y    +KGR  V+F PGD VW+
Sbjct: 1470 LLPLPSSEKVNFDAKERSELILKIHELTKENIERMNAKYKLARDKGRKHVVFAPGDLVWL 1529

Query: 3468 HLRKERFPTQRKSKLQPRGDGPFQVLERIN 3557
            HLRK+RFP  RKSKL PR DGPF+VLE+IN
Sbjct: 1530 HLRKDRFPNLRKSKLMPRADGPFKVLEKIN 1559


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score = 1367 bits (3537), Expect = 0.0
 Identities = 661/1169 (56%), Positives = 852/1169 (72%), Gaps = 26/1169 (2%)
 Frame = +3

Query: 129  AKSKPLISIPKDRPETKSLIKSRQIKCFRCQGFGHIASECPNKRVMVVLANGDIESASSS 308
            AKS P          T S  ++ ++ C RC+G GH A ECP+KRVM++  +G  +SAS  
Sbjct: 404  AKSTPSGPAQSSSSSTASTGQTHEVICRRCKGGGHYARECPSKRVMIITEDGGYDSASDY 463

Query: 309  DNEMPPLEDCSDVEVEEPVHG------------DLLVTRRALSIQPKDEGDEEQREHIFH 452
            D E   L    +  V +                + LV +R LS+Q   + ++ QR ++FH
Sbjct: 464  DEETLALIASEERGVXDTAQETQYMAADYADRYESLVAQRVLSVQVT-QVEQNQRHNLFH 522

Query: 453  TRCHVKDKVCTLIIDSGSCTNVASTLLVEKLNLKWQKLPKPYKLQWLNDCGEVKVNKQVR 632
            T+  VK++   +IID GSC N+AS  +VEKL+L  +  P PY +QW N+ G+VKV + VR
Sbjct: 523  TKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLTTRPHPHPYYIQWFNNSGKVKVTRTVR 582

Query: 633  VPFSIGKYVDEVICDVAPMHAGHILLGRPWQFDRRVSHDGYKNCYSFVMNNRKIILAPLK 812
            V FSI  Y D V CDV PM A  +LLGRPWQFD+   H G  N Y+ V  ++ I L P+ 
Sbjct: 583  VHFSIATYSDFVDCDVVPMQACSVLLGRPWQFDKNSVHHGRTNQYTLVHKDQNITLLPMS 642

Query: 813  PLQAYEDQVRIASECK----KREKQRCEQKGEQSEQPEEKNKVLS---------VLVDKY 953
            P    +D +  AS+ K    K E Q   ++ EQ  +P + +  ++         +L  K 
Sbjct: 643  PEHIMKDDIARASKAKQDLHKSENQIVAKEFEQHNKPNKSSSSVASEIKLKSGCLLATKS 702

Query: 954  DVKSVMIARPQVQVLMYKDVYFSTDDLNXXXXXXXXXXXQDFEDLFPEEIPHGLPPLRGI 1133
            D+  + I        + K+V FS +D+            Q+F D+FP+++P GLPP+RGI
Sbjct: 703  DITDLDITTSVCYAFVCKEVLFSFEDMPSSLPPAVINILQEFADVFPQDVPPGLPPIRGI 762

Query: 1134 EHQIDFIPGSAIPNRPAYRANPEKTKEIQRQVDELLQKGFVRESLSPCSVPVLLVPKKDG 1313
            EHQID IPG+++PNR  YR NPE+TKEI RQV ELL KG++RESLSPC+VP++LVPKKDG
Sbjct: 763  EHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDG 822

Query: 1314 TWRMCVDCRAINKITVKYRHHIPRLDDMFDELHGSRLFSKIDLKNGYYQIRMKEGDEWKT 1493
            T RMCVDCR IN IT++YRH IPRLDDM DEL GS +FSK+DL++GY+QIRMK GDEWKT
Sbjct: 823  TSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSIIFSKVDLRSGYHQIRMKLGDEWKT 882

Query: 1494 AFKTRYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFMGKFVVVYFDDILVYSKNVDDHVK 1673
            AFKT++GLYEWLVMPFGLTNAPSTFMRLMN VLRAF+G+FVVVYFDDIL+YS++++DH+ 
Sbjct: 883  AFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSLEDHLD 942

Query: 1674 HLHAVFSVLREHQLYVNLKKYTFCMESVVFLGFVVSSQGISVDEEKVRAIKDWPTPKNAN 1853
            HL AVF+ LR+ +L+ NL K TFC + V FLG+VV+ QGI VD+ K+ AI+ WP PK   
Sbjct: 943  HLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVT 1002

Query: 1854 EVRSFHGLASFYRRFVQDFSSIAAPLNELXXXXXXXXXXXXHDQAFQTLKDKLTNAPLLC 2033
            +VRSF GLA FYRRFV+DFS+IAAPLNEL             ++AF  LKDKLT+APLL 
Sbjct: 1003 QVRSFLGLAGFYRRFVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQ 1062

Query: 2034 LPNFDKAFEIECDASGIGVGAVLMQDSKPIAYFSEKLSGAALNYPTYDKELYALVRTLRT 2213
            LP+F+K FE+ECDASGIG+G VL+QD KP+AYFSEKLSG +LNY TYDKELYALVRTL T
Sbjct: 1063 LPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLET 1122

Query: 2214 WQHYLWPREFIIHSDHESLKFLKTQGKLNKRHAKWLEFIKTFPYVIKYKRGKENVVADAL 2393
            WQHYLWP+EF+IHSDHESLK +K+Q KLN+RHAKW+EFI+TFPYVIK K+GK+NV+ADAL
Sbjct: 1123 WQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKDKKGKDNVIADAL 1182

Query: 2394 SRRYVLLTSLQTKLLGFELIKDLYANDSDFSQVWNACAK-CAFGDFYRHEGFLFKKDKLC 2570
            SRRY +L+ L  K+ G E IKD Y +D+DF  V   C +   +  F  + GF+F+ +KLC
Sbjct: 1183 SRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLC 1242

Query: 2571 VPNCSVRELLVRESHGGGLMGHFGVLKTLDILREHFYWPLIKHDVQSVCDKCITCRQAKS 2750
            +P  S+R LL++E+HGGGLMGHFGV K  D+L  HF+WP ++ DV+    +C TC++AKS
Sbjct: 1243 IPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKS 1302

Query: 2751 KIRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNGKDSIFVVVDKFSKMSHFIACTKTND 2930
            ++ PHGLY PLPVP+ PW DISMDFVLGLPRT+ G+DSIFVVVD+FSKM+HFI C K++D
Sbjct: 1303 RLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDD 1362

Query: 2931 ATHIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFWRTLWSKLGTKLLFSTVAHPQTDGQT 3110
            A ++A+LFF+E++RLHG+P +IVSDRD KFLS+FWR LW+KLGTKLLFST  HPQTDGQT
Sbjct: 1363 AANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQT 1422

Query: 3111 EVVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNRTIHSTTSFSPFEIVYGFNPLTPVDI 3290
            EVVNR+L+T+LRA+++ NLK WE+CLPHIEFAYNR++HSTT   PFEIVYGF P  P+D+
Sbjct: 1423 EVVNRSLSTMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDL 1482

Query: 3291 LPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNEQYAKQANKGRLKVIFHPGDWVWVH 3470
            LP+P++E  N D K++A+ +  +H   + NI+R N +Y    +KGR  V+F PGD VW+H
Sbjct: 1483 LPIPSSEKVNFDAKERAELILKMHELTKENIERMNARYKLAGDKGRKHVVFAPGDLVWLH 1542

Query: 3471 LRKERFPTQRKSKLQPRGDGPFQVLERIN 3557
            LRK+RFP  RKSKL PR  GPF+VLE+IN
Sbjct: 1543 LRKDRFPDLRKSKLMPRAGGPFKVLEKIN 1571


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score = 1363 bits (3528), Expect = 0.0
 Identities = 658/1169 (56%), Positives = 851/1169 (72%), Gaps = 26/1169 (2%)
 Frame = +3

Query: 129  AKSKPLISIPKDRPETKSLIKSRQIKCFRCQGFGHIASECPNKRVMVVLANGDIESASSS 308
            AKS P          T S  ++ ++ C RC+G GH A ECP+KRVM++  +G  +SAS  
Sbjct: 407  AKSTPSGPAQSSSSSTASTGQTHEVICRRCKGGGHYARECPSKRVMIITEDGGYDSASDY 466

Query: 309  DNEMPPLEDCSDVEVEEPVHG------------DLLVTRRALSIQPKDEGDEEQREHIFH 452
            D E   L    +  V +                + LV +R LS+Q   + ++ QR ++FH
Sbjct: 467  DEETLALIASEERGVADTAQETQYMAADYADRYESLVAQRVLSVQVT-QVEQNQRHNLFH 525

Query: 453  TRCHVKDKVCTLIIDSGSCTNVASTLLVEKLNLKWQKLPKPYKLQWLNDCGEVKVNKQVR 632
            T+  VK++   +IID GSC N+AS  +VEKL+L  +  P PY +QW N+ G+VKV + VR
Sbjct: 526  TKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLTTRPHPHPYYIQWFNNSGKVKVTRTVR 585

Query: 633  VPFSIGKYVDEVICDVAPMHAGHILLGRPWQFDRRVSHDGYKNCYSFVMNNRKIILAPLK 812
            V FSI  Y D V CDV PM A  +LLGRPWQFD+   H G  N Y+ V  ++ I L P+ 
Sbjct: 586  VHFSIATYSDFVDCDVVPMQACSVLLGRPWQFDKNSVHHGRTNQYTLVHKDQNITLLPMS 645

Query: 813  PLQAYEDQVRIASECK----KREKQRCEQKGEQSEQPEEKNKVLS---------VLVDKY 953
            P    +D +  AS+ K    K E Q   ++ EQ  +P + +  ++         +L  K 
Sbjct: 646  PEHIMKDDIARASKAKQDLHKSENQIVAKEFEQHNKPNKSSSSVASEIKLKSGCLLATKS 705

Query: 954  DVKSVMIARPQVQVLMYKDVYFSTDDLNXXXXXXXXXXXQDFEDLFPEEIPHGLPPLRGI 1133
            D+  + I        + K+V FS +D+            Q+F D+FP+++P GLPP+RGI
Sbjct: 706  DITDLDITTSVCYAFVCKEVLFSFEDMPSSLPPAVINILQEFADVFPQDVPPGLPPIRGI 765

Query: 1134 EHQIDFIPGSAIPNRPAYRANPEKTKEIQRQVDELLQKGFVRESLSPCSVPVLLVPKKDG 1313
            EHQID IPG+++PNR  YR NPE+TKEI RQV ELL KG++RESLSPC+VP++LVPKKDG
Sbjct: 766  EHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYIRESLSPCAVPIILVPKKDG 825

Query: 1314 TWRMCVDCRAINKITVKYRHHIPRLDDMFDELHGSRLFSKIDLKNGYYQIRMKEGDEWKT 1493
            T RMCVDCR IN IT++ RH IPRLDDM DEL GS +FSK+DL++GY+QIRMK GDEWKT
Sbjct: 826  TSRMCVDCRGINNITIRXRHPIPRLDDMLDELSGSIIFSKVDLRSGYHQIRMKLGDEWKT 885

Query: 1494 AFKTRYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFMGKFVVVYFDDILVYSKNVDDHVK 1673
            AFKT++GLYEWLVMPFGLTNAPSTFMRLMN VLRAF+G+FVVVYFDDIL+YS++++DH+ 
Sbjct: 886  AFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSLEDHLD 945

Query: 1674 HLHAVFSVLREHQLYVNLKKYTFCMESVVFLGFVVSSQGISVDEEKVRAIKDWPTPKNAN 1853
            HL AVF+ LR+ +L+ NL K TFC + V FLG+VV+ QGI VD+ K+ AI+ WP PK   
Sbjct: 946  HLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVT 1005

Query: 1854 EVRSFHGLASFYRRFVQDFSSIAAPLNELXXXXXXXXXXXXHDQAFQTLKDKLTNAPLLC 2033
            +VRSF G A FYRRFV+DFS+IAAPLNEL             ++AF  LKDKLT+APLL 
Sbjct: 1006 QVRSFLGXAGFYRRFVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQ 1065

Query: 2034 LPNFDKAFEIECDASGIGVGAVLMQDSKPIAYFSEKLSGAALNYPTYDKELYALVRTLRT 2213
            LP+F+K FE+ECDASGIG+G VL+QD KP+AYFSEKLSG +LNY TYDKELYALVRTL T
Sbjct: 1066 LPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLET 1125

Query: 2214 WQHYLWPREFIIHSDHESLKFLKTQGKLNKRHAKWLEFIKTFPYVIKYKRGKENVVADAL 2393
            WQHYLWP+EF+IHSDHESLK +K+Q KLN+RHAKW+EFI+TFPYVIK+K+GK+NV+ADAL
Sbjct: 1126 WQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKHKKGKDNVIADAL 1185

Query: 2394 SRRYVLLTSLQTKLLGFELIKDLYANDSDFSQVWNACAK-CAFGDFYRHEGFLFKKDKLC 2570
            SRRY +L+ L  K+ G E IKD Y +D+DF  V   C +   +  F  + GF+F+ +KLC
Sbjct: 1186 SRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLC 1245

Query: 2571 VPNCSVRELLVRESHGGGLMGHFGVLKTLDILREHFYWPLIKHDVQSVCDKCITCRQAKS 2750
            +P  S+R LL++E+HGGGLMGHFGV K  D+L  HF+WP ++ DV+    +C TC++AKS
Sbjct: 1246 IPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKS 1305

Query: 2751 KIRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNGKDSIFVVVDKFSKMSHFIACTKTND 2930
            ++ PHGLY PLPVP+ PW DISMDFVLGLPRT+ G+DSIFVVVD+FSKM+HFI C K++D
Sbjct: 1306 RLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDD 1365

Query: 2931 ATHIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFWRTLWSKLGTKLLFSTVAHPQTDGQT 3110
            A ++A+LFF+E++RLHG+P +IVSDRD KFLS+FWR LW+KLGTKLLFST  HPQTDGQT
Sbjct: 1366 AANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQT 1425

Query: 3111 EVVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNRTIHSTTSFSPFEIVYGFNPLTPVDI 3290
            EVVNR+L+T+LRA+++ N+K WE+CLPHIEFAYNR++HSTT   PFEIVYGF P  P+D+
Sbjct: 1426 EVVNRSLSTMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDL 1485

Query: 3291 LPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNEQYAKQANKGRLKVIFHPGDWVWVH 3470
            LP+P++E  N D K++A+ +  +H   + NI+R N +Y    +KGR  V+F PGD VW+H
Sbjct: 1486 LPIPSSEKVNFDAKERAELILKMHELTKENIERMNARYKLAGDKGRKHVVFAPGDLVWLH 1545

Query: 3471 LRKERFPTQRKSKLQPRGDGPFQVLERIN 3557
            LRK+RFP  RKSKL PR  GPF+VLE+IN
Sbjct: 1546 LRKDRFPDLRKSKLMPRAGGPFKVLEKIN 1574


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score = 1233 bits (3191), Expect = 0.0
 Identities = 623/1160 (53%), Positives = 799/1160 (68%), Gaps = 13/1160 (1%)
 Frame = +3

Query: 111  FKPKEDAKSKPLISIPKDRPETKSLIKSRQIK-CFRCQGFGHIASECPNKRVMV---VLA 278
            FK  E         + K +    S  K+  +K C++CQG+GH A ECP KR +    V+ 
Sbjct: 276  FKINEPPSQNKTTILDKGKAAETSQKKTMPLKKCYQCQGYGHFAKECPTKRALSSFEVVH 335

Query: 279  NGDIESASSSDNEMPPLEDCSDVEVEEPVHGDLLVTRRALSIQPKDEGDEEQREHIFHTR 458
             GD E     D E+   +   D +V  P  G  LVT R +  QP+   + +QR+ IF +R
Sbjct: 336  WGDDEILVC-DEEVEGTDHEED-DVVMPDAGLSLVTWRVMHTQPQPL-EMDQRQQIFRSR 392

Query: 459  CHVKDKVCTLIIDSGSCTNVASTLLVEKLNLKWQKLPKPYKLQWLNDCGEVKVNKQVRVP 638
            C +K +VC LIID GSCTNVAS+ L+EKL+L  Q  P PYKL+WLN   EV+V+KQ  V 
Sbjct: 393  CTIKGRVCNLIIDGGSCTNVASSTLIEKLSLPTQDHPSPYKLRWLNKGAEVRVDKQCLVT 452

Query: 639  FSIGK-YVDEVICDVAPMHAGHILLGRPWQFDRRVSHDGYKNCYSFVMNNRKIILAPLKP 815
            FSIGK Y DE +CDV PM A H+LLGRPW+FDR   H G  N Y+F   +RK+IL PL P
Sbjct: 453  FSIGKNYSDEALCDVLPMDACHLLLGRPWEFDRDSVHHGRDNTYTFKFRSRKVILTPLPP 512

Query: 816  LQAYEDQVRIASECKKREKQRCEQKGEQSEQPEEKNKVLSVLVDKYDVKSVMIARPQVQV 995
            +  +     +    K+                        +L+++ ++   +     V  
Sbjct: 513  VLKHTTPPSMLEPSKE-----------------------VLLINEAEMLQELKGDEDVYA 549

Query: 996  LMYKDVYFSTDDLNXXXXXXXXXXXQDFEDLFPEEIPHGLPPLRGIEHQIDFIPGSAIPN 1175
            L+ KDV F     N           Q +ED+FP E+P GLPPLRGIEHQIDFIPG+ +PN
Sbjct: 550  LIAKDVVFGQ---NVSLPKEVQELLQSYEDVFPNELPSGLPPLRGIEHQIDFIPGATLPN 606

Query: 1176 RPAYRANPEKTKEIQRQVDELLQKGFVRESLSPCSVPVLLVPKKDGTWRMCVDCRAINKI 1355
            + AYR++P+ T+E+Q+Q+ EL+ KGFVRESLSPCSVP LLVPKKDG+WRMC D RAIN I
Sbjct: 607  KAAYRSDPKATQELQQQIGELVSKGFVRESLSPCSVPALLVPKKDGSWRMCTDSRAINNI 666

Query: 1356 TVKYRHHIPRLDDMFDELHGSRLFSKIDLKNGYYQIRMKEGDEWKTAFKTRYGLYEWLVM 1535
            T+KYR  IPRLDD+ DEL G++LFSKIDL+ GY+Q+R+KEGDEWKTAFKT++GLYEWLVM
Sbjct: 667  TIKYRFPIPRLDDILDELSGAQLFSKIDLRQGYHQVRIKEGDEWKTAFKTKHGLYEWLVM 726

Query: 1536 PFGLTNAPSTFMRLMNHVLRAFMGKFVVVYFDDILVYSKNVDDHVKHLHAVFSVLREHQL 1715
            PFGL+NAPSTFMRLM  VLR ++G+FVVVYFDDILVYS + ++H+KHL  +F  LREH+L
Sbjct: 727  PFGLSNAPSTFMRLMTEVLRPYLGRFVVVYFDDILVYSPSKEEHLKHLQVLFETLREHKL 786

Query: 1716 YVNLKKYTFCMESVVFLGFVVSSQGISVDEEKVRAIKDWPTPKNANEVRSFHGLASFYRR 1895
            Y  L+K +F    V FLGF++S +GI VD+EKV+AIK WP PKN  +VRSFHGLASFYRR
Sbjct: 787  YGKLEKCSFMQNEVQFLGFIISDRGILVDQEKVKAIKSWPIPKNITDVRSFHGLASFYRR 846

Query: 1896 FVQDFSSIAAPLNELXXXXXXXXXXXXHDQAFQTLKDKLTNAPLLCLPNFDKAFEIECDA 2075
            F++DFS++ AP+ E              + +F  +K+KL  +P+L LPNF+K FE+ECDA
Sbjct: 847  FIKDFSTLMAPITECMKKGEFKWGDKA-ESSFNIIKEKLCESPILTLPNFNKLFEVECDA 905

Query: 2076 SGIGVGAVLMQDSKPIAYFSEKLSGAALNYPTYDKELYALVRTLRTWQHYLWPREFIIHS 2255
            SGIG+GAVL+Q+ KPIAYFSEKLSGA LNY TYDKE YA+VR L  W HYL PR F++HS
Sbjct: 906  SGIGIGAVLVQEHKPIAYFSEKLSGAKLNYSTYDKEFYAIVRALNHWSHYLKPRPFVLHS 965

Query: 2256 DHESLKFLKTQGKLNKRHAKWLEFIKTFPYVIKYKRGKENVVADALSRRYVLLTSLQTKL 2435
            DHE+LK++  Q KLN RHAKW+EF+++F +  KY  GK+N+VADALSRR+++L+ ++ ++
Sbjct: 966  DHEALKYINGQHKLNHRHAKWVEFLQSFNFSSKYIEGKDNIVADALSRRFIMLSFMEQRV 1025

Query: 2436 LGFELIKDLYANDSDFSQVWNACAKCAF---GDFYRHEGFLFKKDKLCVPNCSVRELLVR 2606
            LGFE +K+LY  D DF   W             +    GFLF  +KLCVP    R LL+R
Sbjct: 1026 LGFEYMKELYVEDPDFKGEWELLQSGQIKLKSKYLVQNGFLFFGNKLCVPRGPYRNLLIR 1085

Query: 2607 ESHGGGLMGHFGVLKTLDILREHFYWPLIKHDVQSVCDKCITCRQAKSKIRPHGLYTPLP 2786
            E H  GL GHFG+ KT DIL+E FYWP +  DVQ V  +C  C+Q+KS  +  G YTPLP
Sbjct: 1086 EVHSNGLAGHFGIQKTYDILQEQFYWPKMLGDVQDVIKRCAPCQQSKSYFQT-GPYTPLP 1144

Query: 2787 VPNQPWTDISMDFVLGLPRTQNGKDSIFVVVDKFSKMSHFIACTKTNDATHIAELFFKEV 2966
            VPNQPW DISMDF++ LPRTQ GKDSI VVVD+FSKM+HFIAC KT DAT +AEL+FKEV
Sbjct: 1145 VPNQPWEDISMDFIVALPRTQRGKDSIMVVVDRFSKMAHFIACKKTEDATSVAELYFKEV 1204

Query: 2967 VRLHGLPKSIVSDRDVKFLSYFWRTLWSKLGTKLLFSTVAHPQTDGQTEVVNRTLTTLLR 3146
            V+LHG+PKSIVSDRD KF+S+FWRTLW  L T+LLFST  HPQTDGQTEV N+TL  +LR
Sbjct: 1205 VKLHGIPKSIVSDRDSKFMSHFWRTLWKLLKTRLLFSTSHHPQTDGQTEVTNKTLGRILR 1264

Query: 3147 AIIQKNLKQWEKCLPHIEFAYNRTIHSTTSFSPFEIVYGFNPLTPVDILPLPTNEHANLD 3326
              + ++LK W+  L   EFA+NR   +TT  SPFE+VYG NP+ P D+ P+  N   + D
Sbjct: 1265 CTVARSLKDWDLKLAQAEFAFNRAPSTTTGKSPFEVVYGVNPMMPTDLAPIKRNT-IDYD 1323

Query: 3327 GKKKADFVKDLHAKVRANIDRKNEQYAKQANKGRLKVI-----FHPGDWVWVHLRKERFP 3491
             KK+ + +  +H +V+  I++ NE     A+KG+ K +     F PGD VW+HLRKERFP
Sbjct: 1324 AKKRVEQMLHIHEQVKKQIEKANE-----AHKGKSKGVKGTKSFEPGDLVWIHLRKERFP 1378

Query: 3492 TQRKSKLQPRGDGPFQVLER 3551
             +RK+KL PR DGPF+VLE+
Sbjct: 1379 EKRKNKLMPRADGPFEVLEK 1398


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score = 1217 bits (3148), Expect = 0.0
 Identities = 612/1167 (52%), Positives = 793/1167 (67%), Gaps = 20/1167 (1%)
 Frame = +3

Query: 114  KPKEDAKSKPLISIPKDR----PETKSLIKSRQIKCFRCQGFGHIASECPNKRVMVVLAN 281
            K  +  K+ P  ++ K +    P+    +   +IKCF+CQGFGH   +CP+ R +  +  
Sbjct: 276  KINDPPKTTPQSTVDKGKAPMNPKINPPLSRDKIKCFQCQGFGHFRKDCPSARTLTAIEV 335

Query: 282  GDIESASSSDNEMPPLEDCSDVEVEEPVHGDLLVT-----------RRALSIQPKDEGDE 428
             + E     + E        +VE E+    D +V            R   S Q   E D 
Sbjct: 336  AEWEREGLVEYEEDEALVLEEVESEKETSPDQIVAHPDTGHSLFLWRVMHSQQAPLEAD- 394

Query: 429  EQREHIFHTRCHVKDKVCTLIIDSGSCTNVASTLLVEKLNLKWQKLPKPYKLQWLNDCGE 608
             QR  IF +RC V+ +VC LII+ GSCTNVAST +V KL L  Q+ P PYKL+WL+    
Sbjct: 395  -QRSMIFRSRCTVQGRVCNLIINGGSCTNVASTTMVSKLGLPTQEHPNPYKLRWLSKDSG 453

Query: 609  VKVNKQVRVPFSIGK-YVDEVICDVA-PMHAGHILLGRPWQFDRRVSHDGYKNCYSFVMN 782
            V+V+KQ  + FSIGK Y DEV+CDV  PM A H+LLGRPW++DR  +H G  N Y F   
Sbjct: 454  VRVDKQCIISFSIGKMYKDEVLCDVVVPMDACHLLLGRPWEYDRNTTHQGKDNVYIFKHQ 513

Query: 783  NRKIILAPLKPLQAYEDQVRIASECKKREKQRCEQKGEQSEQPEEKNKVLSVLVDKYDVK 962
             +K+ L PL P Q       +                     PEE + VL  L +   +K
Sbjct: 514  GKKVTLTPLPPNQRDYGSPNV---------------------PEEMSGVL-FLSEAAMIK 551

Query: 963  SVMIARPQVQVLMYKDVYFSTDDLNXXXXXXXXXXXQDFEDLFPEEIPHGLPPLRGIEHQ 1142
             +  A+P V +L+ ++V     + N           Q F+++FP+E+P GLPPLRGIEH 
Sbjct: 552  EIRQAQP-VLMLLSREV---NQEENTVVPTAVAPLIQRFQEVFPDELPSGLPPLRGIEHH 607

Query: 1143 IDFIPGSAIPNRPAYRANPEKTKEIQRQVDELLQKGFVRESLSPCSVPVLLVPKKDGTWR 1322
            ID +PGS +PN+PAYR +P  TKE+Q Q++EL+ KGFVRESLSPC+VP LLVPKKDGTWR
Sbjct: 608  IDLVPGSVLPNKPAYRCDPNATKELQHQIEELMAKGFVRESLSPCAVPALLVPKKDGTWR 667

Query: 1323 MCVDCRAINKITVKYRHHIPRLDDMFDELHGSRLFSKIDLKNGYYQIRMKEGDEWKTAFK 1502
            MC D RAIN ITVKYR  IPRLDDM DEL G+ +FSKIDL+ GY+Q+R++EGDEWKTAFK
Sbjct: 668  MCTDSRAINNITVKYRFPIPRLDDMLDELSGASIFSKIDLRQGYHQVRIREGDEWKTAFK 727

Query: 1503 TRYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFMGKFVVVYFDDILVYSKNVDDHVKHLH 1682
            T++GLYEWLVMPFGL+NAPSTFMRLM  VLR  +GKF VVYFDDILVYSK   +H+KHL 
Sbjct: 728  TKHGLYEWLVMPFGLSNAPSTFMRLMTEVLRPCLGKFAVVYFDDILVYSKTKGEHLKHLE 787

Query: 1683 AVFSVLREHQLYVNLKKYTFCMESVVFLGFVVSSQGISVDEEKVRAIKDWPTPKNANEVR 1862
             VF +LRE +LY  L+K TF +E V FLG+++S +GISVD+E + A++ WPTP    EVR
Sbjct: 788  VVFKILREQKLYGKLEKCTFMVEEVAFLGYLISGRGISVDQENIAAMQSWPTPTTVTEVR 847

Query: 1863 SFHGLASFYRRFVQDFSSIAAPLNELXXXXXXXXXXXXHDQAFQTLKDKLTNAPLLCLPN 2042
            SFHGLASFYRRF+++FS++ AP+ E               Q+F+ +K  + N P+L LP+
Sbjct: 848  SFHGLASFYRRFIKNFSTVVAPITECMRKGEFQWTEQA-QQSFEKIKQLMCNTPILKLPD 906

Query: 2043 FDKAFEIECDASGIGVGAVLMQDSKPIAYFSEKLSGAALNYPTYDKELYALVRTLRTWQH 2222
            FD+ FE+ECDASG+G+GAVL+Q  KP+AYFSEKL+GA L Y TYDKE YA++R L  W H
Sbjct: 907  FDQLFEVECDASGVGIGAVLIQSQKPVAYFSEKLNGAKLKYSTYDKEFYAIIRALMHWNH 966

Query: 2223 YLWPREFIIHSDHESLKFLKTQGKLNKRHAKWLEFIKTFPYVIKYKRGKENVVADALSRR 2402
            YL P+ F++HSDHE+LK++  Q KLN RHAKW+EF+++F +  KYK GK+NVVADALSRR
Sbjct: 967  YLKPKPFVLHSDHEALKYINGQHKLNFRHAKWVEFLQSFTFSSKYKEGKKNVVADALSRR 1026

Query: 2403 YVLLTSLQTKLLGFELIKDLYANDSDFSQVW---NACAKCAFGDFYRHEGFLFKKDKLCV 2573
            + LL+ +  ++LGFE +K+LY  D DFS+ W       K     +   EGFLF+ +KLCV
Sbjct: 1027 HSLLSVMSNRVLGFEFMKELYKEDPDFSEEWITQTEGHKNQGSKYLLQEGFLFQGNKLCV 1086

Query: 2574 PNCSVRELLVRESHGGGLMGHFGVLKTLDILREHFYWPLIKHDVQSVCDKCITCRQAKSK 2753
            P  S R+LL+RE H GG+ GHFGV KTL+IL++ FYWP +  DVQ +  +C  C+ +KS 
Sbjct: 1087 PRGSYRDLLIREVHSGGMGGHFGVQKTLEILQDQFYWPRMMGDVQIILRRCSKCQLSKSS 1146

Query: 2754 IRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNGKDSIFVVVDKFSKMSHFIACTKTNDA 2933
             +P G YTPLPVP++PW D+SMDF++ LPRTQ GKDS+ VVVD+FSKM+HF+AC KT DA
Sbjct: 1147 FQP-GPYTPLPVPSKPWEDLSMDFIVALPRTQRGKDSVMVVVDRFSKMAHFVACKKTEDA 1205

Query: 2934 THIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFWRTLWSKLGTKLLFSTVAHPQTDGQTE 3113
              +AELF KE+VRLHG+PK+IVSDRD KF+ YFW+TLW  L TKLLFST  HPQTDGQTE
Sbjct: 1206 VSVAELFLKEIVRLHGVPKTIVSDRDTKFMGYFWKTLWKLLKTKLLFSTSHHPQTDGQTE 1265

Query: 3114 VVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNRTIHSTTSFSPFEIVYGFNPLTPVDIL 3293
            V NRTL  +LR ++ K+LK W+  L   EFA+NR   + T  SPFE+VYG NPL P+D+ 
Sbjct: 1266 VTNRTLGRILRCLVSKSLKDWDLKLAAAEFAFNRAPSTATGHSPFEVVYGVNPLMPLDLS 1325

Query: 3294 PLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNEQYAKQANKGRLKVIFHPGDWVWVHL 3473
             +P  E+ NLD  K+A+ +  LH  V+  I+R NEQY K     + K  F PGD VW+HL
Sbjct: 1326 SVP-KENINLDAMKRAEQLLKLHETVKRQIERTNEQYQKHLKVPKGKKEFEPGDLVWIHL 1384

Query: 3474 RKERFPTQRKSKLQPRGDGPFQVLERI 3554
            RKERFP +RK+KL PR DGPF+V+E+I
Sbjct: 1385 RKERFPAKRKNKLMPRSDGPFEVVEKI 1411


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score = 1189 bits (3077), Expect = 0.0
 Identities = 566/905 (62%), Positives = 701/905 (77%), Gaps = 1/905 (0%)
 Frame = +3

Query: 846  ASECKKREKQRCEQKGEQSEQPEEKNKVLSVLVDKYDVKSVMIARPQVQVLMYKDVYFST 1025
            A+E +K +K+       Q+ + E K K    +  K D+  V         L+ K+  F  
Sbjct: 537  ANELEKHKKK--PTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPI 594

Query: 1026 DDLNXXXXXXXXXXXQDFEDLFPEEIPHGLPPLRGIEHQIDFIPGSAIPNRPAYRANPEK 1205
            +D             Q++ D+FP+E+P GLPP+RGIEHQID IPG+++PNR  YR NPE+
Sbjct: 595  EDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEE 654

Query: 1206 TKEIQRQVDELLQKGFVRESLSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHHIPR 1385
            TKEIQRQV ELL KG+VRESLSPCSVPVLLVPKKDG+WRMCVDCRAIN IT++YRH IPR
Sbjct: 655  TKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPR 714

Query: 1386 LDDMFDELHGSRLFSKIDLKNGYYQIRMKEGDEWKTAFKTRYGLYEWLVMPFGLTNAPST 1565
            LDDM DEL GS +FSKIDL +GY+QIRMK GDEWKTAFKT++GLYEWLVMPFGLTNAPST
Sbjct: 715  LDDMLDELSGSLVFSKIDLCSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPST 774

Query: 1566 FMRLMNHVLRAFMGKFVVVYFDDILVYSKNVDDHVKHLHAVFSVLREHQLYVNLKKYTFC 1745
            FMRLMN VLRAF+G+FVVVYFDDIL+YS++++DH  HL AVF  LR+ +L+ NL+K TFC
Sbjct: 775  FMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFC 834

Query: 1746 MESVVFLGFVVSSQGISVDEEKVRAIKDWPTPKNANEVRSFHGLASFYRRFVQDFSSIAA 1925
             + V FLG+VV+ QGI VD+ KV AI  WP P    +VRSF GLA FYR FV+DFS+IAA
Sbjct: 835  TDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRLFVKDFSTIAA 894

Query: 1926 PLNELXXXXXXXXXXXXHDQAFQTLKDKLTNAPLLCLPNFDKAFEIECDASGIGVGAVLM 2105
            PL+EL               AF TLKDKLT+APLL LP+F+K FE+ECDASGIG+G VL+
Sbjct: 895  PLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLL 954

Query: 2106 QDSKPIAYFSEKLSGAALNYPTYDKELYALVRTLRTWQHYLWPREFIIHSDHESLKFLKT 2285
            Q+ KP+AYFSEKLSG +LNY TYDK+L+ALVRTL TWQHYLWP+EF+IHSDHESLK +++
Sbjct: 955  QEGKPVAYFSEKLSGPSLNYSTYDKQLFALVRTLETWQHYLWPKEFVIHSDHESLKHIRS 1014

Query: 2286 QGKLNKRHAKWLEFIKTFPYVIKYKRGKENVVADALSRRYVLLTSLQTKLLGFELIKDLY 2465
            Q KLN+RHAKW+EFI++FPYVIK+K+GKENV+ DALSRRY +L+ L  K+ G E IK+ Y
Sbjct: 1015 QAKLNRRHAKWVEFIESFPYVIKHKKGKENVIVDALSRRYAMLSQLDFKIFGLETIKEQY 1074

Query: 2466 ANDSDFSQVWNACAK-CAFGDFYRHEGFLFKKDKLCVPNCSVRELLVRESHGGGLMGHFG 2642
            A+D DF  V   C +   +  F    GF+F+ +KLC+P  SV  LL++E+HGGGLMGHFG
Sbjct: 1075 AHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFG 1134

Query: 2643 VLKTLDILREHFYWPLIKHDVQSVCDKCITCRQAKSKIRPHGLYTPLPVPNQPWTDISMD 2822
            V KT DIL +H +WP ++ DV+    +C TC++AKS++ PHGLY PLPVP+ PW DISMD
Sbjct: 1135 VKKTEDILADHLFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMD 1194

Query: 2823 FVLGLPRTQNGKDSIFVVVDKFSKMSHFIACTKTNDATHIAELFFKEVVRLHGLPKSIVS 3002
            FVLGLPRT+ G+DSIFVVVD+FSKM+HFI C K++DATH+A+LFF+E+VRLHG+P +IVS
Sbjct: 1195 FVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVS 1254

Query: 3003 DRDVKFLSYFWRTLWSKLGTKLLFSTVAHPQTDGQTEVVNRTLTTLLRAIIQKNLKQWEK 3182
            DRD KFLS+FWRTLW+KLGTKLLFST  HPQTDGQTEVVNRT++T+LRA+++KN+K WE+
Sbjct: 1255 DRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTVSTMLRAVLKKNIKMWEE 1314

Query: 3183 CLPHIEFAYNRTIHSTTSFSPFEIVYGFNPLTPVDILPLPTNEHANLDGKKKADFVKDLH 3362
            CLPH+EFAYNR+ HSTT   PFEIVYG  P  P+D+LPLPT E  N D K +A+ +  LH
Sbjct: 1315 CLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTLERVNFDAKYRAELMLKLH 1374

Query: 3363 AKVRANIDRKNEQYAKQANKGRLKVIFHPGDWVWVHLRKERFPTQRKSKLQPRGDGPFQV 3542
               + NI+R N +Y    +KG+  V F PGD VW+HLRK+RFP  RKSKL PR DGPFQV
Sbjct: 1375 ETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLPPRADGPFQV 1434

Query: 3543 LERIN 3557
            L++IN
Sbjct: 1435 LQKIN 1439



 Score =  126 bits (316), Expect = 8e-26
 Identities = 70/194 (36%), Positives = 105/194 (54%), Gaps = 14/194 (7%)
 Frame = +3

Query: 69  NNPWRPNWKDNK-IPFKPKEDAKSKPLISIPKDRPETKSLIKSRQIKCFRCQGFGHIASE 245
           +N  RP+  ++   P +P     + P     K      SL ++R I+C RC+G+GH+  +
Sbjct: 338 SNKLRPSTTNSTPCPSEPTRGVAATP----SKSSSSVASLGRTRDIQCLRCKGYGHVRKD 393

Query: 246 CPNKRVMVVLANGDIESASSSDNEM-------------PPLEDCSDVEVEEPVHGDLLVT 386
           CP+ RVM+V A+G   SAS  D E               P +D   ++ E   H + LV 
Sbjct: 394 CPSTRVMIVRADGGYSSASDLDEETYALLATNNAGEGDAPHQDEEHIKAEAAEHYESLVV 453

Query: 387 RRALSIQPKDEGDEEQREHIFHTRCHVKDKVCTLIIDSGSCTNVASTLLVEKLNLKWQKL 566
           +R LS Q  +  ++ QR  +F T+C +K++ C +IID GSC N+AS  +VEKL L  Q  
Sbjct: 454 QRVLSAQ-MERAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLALSTQPH 512

Query: 567 PKPYKLQWLNDCGE 608
           P+PY +QWLN  G+
Sbjct: 513 PQPYYIQWLNSSGK 526


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 889

 Score = 1142 bits (2953), Expect = 0.0
 Identities = 537/819 (65%), Positives = 659/819 (80%), Gaps = 6/819 (0%)
 Frame = +3

Query: 1119 PLRGI-----EHQIDFIPGSAIPNRPAYRANPEKTKEIQRQVDELLQKGFVRESLSPCSV 1283
            P RG+     +H +     +++PNR  YR NPE+TKEIQRQV ELL KG+VRESLSPCSV
Sbjct: 42   PRRGVSIAKAQHNVS----ASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSV 97

Query: 1284 PVLLVPKKDGTWRMCVDCRAINKITVKYRHHIPRLDDMFDELHGSRLFSKIDLKNGYYQI 1463
            PVLLVPKKDG+WRMCVDCRAIN IT++YRH IPRLDDM DEL GS +F KIDL++GY+QI
Sbjct: 98   PVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFCKIDLRSGYHQI 157

Query: 1464 RMKEGDEWKTAFKTRYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFMGKFVVVYFDDILV 1643
            RMK GDEWKTAFKT++GLYEWLVMPFGLTNAPSTFMRLMN VLRAF+G+FVVVYFDDIL+
Sbjct: 158  RMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILI 217

Query: 1644 YSKNVDDHVKHLHAVFSVLREHQLYVNLKKYTFCMESVVFLGFVVSSQGISVDEEKVRAI 1823
            YS++++DH  HL AVF  LR+ +L+ NL+K TFC + V FLG+VV+ QGI VD+ KV AI
Sbjct: 218  YSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAI 277

Query: 1824 KDWPTPKNANEVRSFHGLASFYRRFVQDFSSIAAPLNELXXXXXXXXXXXXHDQAFQTLK 2003
              WP P    +VRSF GLA FYR FV+DFS+IAAPL+EL               AF TLK
Sbjct: 278  HSWPVPTTITQVRSFLGLAGFYRHFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLK 337

Query: 2004 DKLTNAPLLCLPNFDKAFEIECDASGIGVGAVLMQDSKPIAYFSEKLSGAALNYPTYDKE 2183
            DKLT+APLL LP+F+K FE+ECDASGIG+G VL+Q+ KP+AYFSEKLSG +LNY TYDKE
Sbjct: 338  DKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKE 397

Query: 2184 LYALVRTLRTWQHYLWPREFIIHSDHESLKFLKTQGKLNKRHAKWLEFIKTFPYVIKYKR 2363
            L+ALVRTL TWQHYLWP+EF+IHSDHESLK +++Q KLN+RHAKW+EFI++FPYVIK+K+
Sbjct: 398  LFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKK 457

Query: 2364 GKENVVADALSRRYVLLTSLQTKLLGFELIKDLYANDSDFSQVWNACAK-CAFGDFYRHE 2540
            GKENV+ADALSRRY +L+ L  K+ G E IK+ YA+D DF  V   C +   +  F    
Sbjct: 458  GKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTN 517

Query: 2541 GFLFKKDKLCVPNCSVRELLVRESHGGGLMGHFGVLKTLDILREHFYWPLIKHDVQSVCD 2720
            GF+F+ +KLC+P  SVR LL++E+HGGGLMGHFGV KT DIL +HF+WP ++ DV+    
Sbjct: 518  GFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVA 577

Query: 2721 KCITCRQAKSKIRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNGKDSIFVVVDKFSKMS 2900
            +C TC++AKS++ PHGLY PLPVP+ PW DISMDFVLGLPRT+ G+DSIFVVVD+FSKM+
Sbjct: 578  RCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMA 637

Query: 2901 HFIACTKTNDATHIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFWRTLWSKLGTKLLFST 3080
            HFI C K++DATH+A+LFF+E+VRLHG+P +IVSDRD KFLS+FWRTLW+KLGTKLLFST
Sbjct: 638  HFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFST 697

Query: 3081 VAHPQTDGQTEVVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNRTIHSTTSFSPFEIVY 3260
              HPQTDGQTEVVNRTL+T+LRA+++KN+K WE+CLPH+EFAYN + HSTT   PFEIVY
Sbjct: 698  TCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNHSQHSTTKKCPFEIVY 757

Query: 3261 GFNPLTPVDILPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNEQYAKQANKGRLKVI 3440
            G  P  P+D+LPLPT+E  N D K +A+ +  LH   + NI+R N +Y    +KG+  V 
Sbjct: 758  GLLPRAPIDLLPLPTSERVNFDAKHRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVA 817

Query: 3441 FHPGDWVWVHLRKERFPTQRKSKLQPRGDGPFQVLERIN 3557
            F PGD VW+HLRK+RFP  RKSKLQPR DGPF+VL++IN
Sbjct: 818  FEPGDLVWLHLRKDRFPNLRKSKLQPRADGPFKVLQKIN 856


>ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prunus persica]
            gi|462405925|gb|EMJ11389.1| hypothetical protein
            PRUPE_ppa017790mg [Prunus persica]
          Length = 1485

 Score = 1094 bits (2829), Expect = 0.0
 Identities = 557/1121 (49%), Positives = 747/1121 (66%), Gaps = 4/1121 (0%)
 Frame = +3

Query: 207  CFRCQGFGHIASECPNKRVMVVLANGDIESASSSDNEMPPLEDCSDVE--VEEPVHGDLL 380
            C+RCQ  GH ++ CP  +     AN   E+    +N+     D +  E  VEE +    L
Sbjct: 351  CYRCQKPGHRSNVCPELKQ----ANFIEEADEDEENDEVGENDYAGAEFAVEEGMEKITL 406

Query: 381  VTRRALSIQPKDEGDEEQREHIFHTRCHVKDKVCTLIIDSGSCTNVASTLLVEKLNLKWQ 560
            V +R L + P++EG   QR  IF + C +K+KVC +I+D+GSC N  S  LVE L L  +
Sbjct: 407  VLQRVL-LAPREEG---QRHSIFRSLCSIKNKVCDVIVDNGSCENFVSKKLVEYLQLSTE 462

Query: 561  KLPKPYKLQWLNDCGEVKVNKQVRVPFSIGK-YVDEVICDVAPMHAGHILLGRPWQFDRR 737
                PY L W+     V+V +  RVP SIGK Y DEV+CDV  M A HILLGRPWQFD  
Sbjct: 463  PHVSPYSLGWVKKGPSVRVAETCRVPLSIGKHYRDEVLCDVIDMDACHILLGRPWQFDVD 522

Query: 738  VSHDGYKNCYSFVMNNRKIILAPLKPLQAYEDQVRIASECKKREKQRCEQKGEQSEQPEE 917
             +  G  N   F  NNRKI +   +P           S+     K R           +E
Sbjct: 523  ATFKGRDNVILFSWNNRKIAMTTTQP-----------SKPSVEVKTRSSSFLTLISNEQE 571

Query: 918  KNKVLSVLVDKYDVKSVMIARPQVQVLMYKDVYFSTDDLNXXXXXXXXXXXQDFEDLFPE 1097
             N+ +     + D+         VQ ++                         F++LF E
Sbjct: 572  LNEAVKEAEGEGDIPQ------DVQQIL-----------------------SQFQELFSE 602

Query: 1098 EIPHGLPPLRGIEHQIDFIPGSAIPNRPAYRANPEKTKEIQRQVDELLQKGFVRESLSPC 1277
             +P+ LPP+R I+H+ID +PG+++ N P YR +P++   ++ Q++ELL+KGF+RESLSPC
Sbjct: 603  NLPNELPPMRDIQHRIDLVPGASLQNLPHYRMSPKENDILREQIEELLRKGFIRESLSPC 662

Query: 1278 SVPVLLVPKKDGTWRMCVDCRAINKITVKYRHHIPRLDDMFDELHGSRLFSKIDLKNGYY 1457
            +VPVLLVPKKD TWRMCVD RAINKITVKYR  IPRL+DM D L GS++FSKIDL++GY+
Sbjct: 663  AVPVLLVPKKDKTWRMCVDSRAINKITVKYRFPIPRLEDMLDVLSGSKVFSKIDLRSGYH 722

Query: 1458 QIRMKEGDEWKTAFKTRYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFMGKFVVVYFDDI 1637
            QIR++ GDEWKTAFK++ GL+EWLVMPFGL+N PSTFMRLMN VLR F+G FVVVYFDDI
Sbjct: 723  QIRIRPGDEWKTAFKSKDGLFEWLVMPFGLSNTPSTFMRLMNQVLRPFIGSFVVVYFDDI 782

Query: 1638 LVYSKNVDDHVKHLHAVFSVLREHQLYVNLKKYTFCMESVVFLGFVVSSQGISVDEEKVR 1817
            L+YS   ++H+ HL  V  VLRE++L+VNLKK TFC   ++FLGFVV   GI VD+EK++
Sbjct: 783  LIYSTTKEEHLVHLRQVLDVLRENKLFVNLKKCTFCTNKLLFLGFVVGEHGIQVDDEKIK 842

Query: 1818 AIKDWPTPKNANEVRSFHGLASFYRRFVQDFSSIAAPLNELXXXXXXXXXXXXHDQAFQT 1997
            AI DWP PK  +EVRSFHGLA+FYRRFV+ FSSI AP+ E              +++F  
Sbjct: 843  AILDWPAPKTVSEVRSFHGLATFYRRFVRHFSSIVAPITE-CLKKGRFSWGEEQERSFAD 901

Query: 1998 LKDKLTNAPLLCLPNFDKAFEIECDASGIGVGAVLMQDSKPIAYFSEKLSGAALNYPTYD 2177
            +K+KL  AP+L LPNF+K FE+ECDASG+GVGAVL QD +P+A+FSEKLS A   + TYD
Sbjct: 902  IKEKLCTAPVLALPNFEKVFEVECDASGVGVGAVLSQDKRPVAFFSEKLSDARQKWSTYD 961

Query: 2178 KELYALVRTLRTWQHYLWPREFIIHSDHESLKFLKTQGKLNKRHAKWLEFIKTFPYVIKY 2357
            +E YA+VR L+ W+HYL  +EF++ +DH++LK++ +Q  ++K HA+W+ F++ F +VIK+
Sbjct: 962  QEFYAVVRALKQWEHYLIQKEFVLFTDHQALKYINSQKNIDKMHARWVTFLQKFSFVIKH 1021

Query: 2358 KRGKENVVADALSRRYVLLTSLQTKLLGFELIKDLYANDSDFSQVWNACA-KCAFGDFYR 2534
              GK N VADALSRR  LL +L  +++GFE +K+LY  D+DF ++W  C  +    D++ 
Sbjct: 1022 TSGKTNRVADALSRRASLLITLTQEVVGFECLKELYEGDADFGEIWTKCTNQEPMADYFL 1081

Query: 2535 HEGFLFKKDKLCVPNCSVRELLVRESHGGGLMGHFGVLKTLDILREHFYWPLIKHDVQSV 2714
            +EG+LFK ++LC+P  S+RE L+R+ HGGGL GH G  KT+  + E FYWP +K DV ++
Sbjct: 1082 NEGYLFKGNQLCIPVSSLREKLIRDLHGGGLSGHLGRDKTIAGMEERFYWPQLKRDVGTI 1141

Query: 2715 CDKCITCRQAKSKIRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNGKDSIFVVVDKFSK 2894
              KC TC+ +K +++  GLY PLPVPN  W D++MDFVLGLPRTQ G DS+FVVVD+FSK
Sbjct: 1142 VRKCYTCQTSKGQVQNTGLYMPLPVPNDIWQDLAMDFVLGLPRTQRGVDSVFVVVDRFSK 1201

Query: 2895 MSHFIACTKTNDATHIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFWRTLWSKLGTKLLF 3074
            M+HFIAC KT DA++IA+LFF+EVVRLHG+P SI SDRD KFLS+FW TLW   GT L  
Sbjct: 1202 MAHFIACRKTADASNIAKLFFREVVRLHGVPTSITSDRDTKFLSHFWITLWRLFGTTLNR 1261

Query: 3075 STVAHPQTDGQTEVVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNRTIHSTTSFSPFEI 3254
            S+ AHPQTDGQTEV NRTL  ++R++  +  KQW+  LP +EFAYN  +HS T  SPF I
Sbjct: 1262 SSTAHPQTDGQTEVTNRTLGNMVRSVCGEKPKQWDYALPQVEFAYNSAVHSATGKSPFSI 1321

Query: 3255 VYGFNPLTPVDILPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNEQYAKQANKGRLK 3434
            VY   P   VD++ LP  +  ++  K  A+ V  +  +V+  +++ N +Y   A+K R  
Sbjct: 1322 VYTAMPNHVVDLVKLPRGQQTSVAAKNLAEEVVAVRDEVKQKLEQTNAKYKAAADKHRRV 1381

Query: 3435 VIFHPGDWVWVHLRKERFPTQRKSKLQPRGDGPFQVLERIN 3557
             +F  GD V + LRKERFP    SKL+P+  GP++VL+RIN
Sbjct: 1382 KVFQEGDSVMIFLRKERFPVGTYSKLKPKKYGPYKVLKRIN 1422


>gb|AAM15062.1| putative retroelement integrase [Arabidopsis thaliana]
          Length = 1215

 Score = 1088 bits (2815), Expect = 0.0
 Identities = 542/971 (55%), Positives = 687/971 (70%), Gaps = 9/971 (0%)
 Frame = +3

Query: 3    LHKAIKVEKQIKXXXXXXXXXXNNPW-RPNWK--------DNKIPFKPKEDAKSKPLISI 155
            LHKAI  E+Q+K          +    +P ++         NK    P+ ++K    +  
Sbjct: 83   LHKAILFEQQVKRKSSSRSSYGSGTIAKPTYQREERTSSYHNKPIVSPRAESKPYAAVQD 142

Query: 156  PKDRPETKSLIKSRQIKCFRCQGFGHIASECPNKRVMVVLANGDIESASSSDNEMPPLED 335
             K + E  S  + R ++C++CQG GH A+ECPNKRVM++L NG+IE     + E+P    
Sbjct: 143  HKGKAEI-STSRVRDVRCYKCQGKGHYANECPNKRVMILLDNGEIEP----EEEIPDSPS 197

Query: 336  CSDVEVEEPVHGDLLVTRRALSIQPKDEGDEEQREHIFHTRCHVKDKVCTLIIDSGSCTN 515
                  E P  G+LLV RR LS+Q K + ++EQR+++FHTRCHV  KVC+LIID GSCTN
Sbjct: 198  SLKENEELPAQGELLVARRTLSVQTKTD-EQEQRKNLFHTRCHVHGKVCSLIIDGGSCTN 256

Query: 516  VASTLLVEKLNLKWQKLPKPYKLQWLNDCGEVKVNKQVRVPFSIGKYVDEVICDVAPMHA 695
            VAS  +V+KL LKW           LND G+++V  QV VP  IGKY DE++CDV PM A
Sbjct: 257  VASETMVKKLGLKW-----------LNDSGKMRVKNQVVVPIVIGKYEDEILCDVLPMEA 305

Query: 696  GHILLGRPWQFDRRVSHDGYKNCYSFVMNNRKIILAPLKPLQAYEDQVRIASECKKREKQ 875
            GHILLGRPWQ DR+V HDG+ N +SF     K IL  + P + Y+DQ+ +        KQ
Sbjct: 306  GHILLGRPWQSDRKVMHDGFTNRHSFEFKGGKTILVSMTPHEVYQDQIHL--------KQ 357

Query: 876  RCEQKGEQSEQPEEKNKVLSVLVDKYDVKSVMIARPQVQVLMYKDVYFSTDDLNXXXXXX 1055
            + EQ  +Q           +      +VKS   ++  + + ++K+   S  +        
Sbjct: 358  KKEQVVKQP----------NFFAKSGEVKSAYSSKQPMLLFVFKEALTSLTNFAPVLPSE 407

Query: 1056 XXXXXQDFEDLFPEEIPHGLPPLRGIEHQIDFIPGSAIPNRPAYRANPEKTKEIQRQVDE 1235
                 QD++D+FPE+ P GLPP+RGIEHQIDF+PG+++PNRPAYR NP +TKE+QRQ   
Sbjct: 408  MTSLLQDYKDVFPEDNPKGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELQRQ--- 464

Query: 1236 LLQKGFVRESLSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHHIPRLDDMFDELHG 1415
                                   KDG+WRMC DCRAIN +TVKY H IPRLDDM DELHG
Sbjct: 465  -----------------------KDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHG 501

Query: 1416 SRLFSKIDLKNGYYQIRMKEGDEWKTAFKTRYGLYEWLVMPFGLTNAPSTFMRLMNHVLR 1595
            S +FSKIDLK+GY+QIRM EGDEWKTAFKT++GLYEWLVMPFGLT+APSTFMRLMNHVLR
Sbjct: 502  SSIFSKIDLKSGYHQIRMNEGDEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLR 561

Query: 1596 AFMGKFVVVYFDDILVYSKNVDDHVKHLHAVFSVLREHQLYVNLKKYTFCMESVVFLGFV 1775
            AF+G FV+VYFDDILVYS+++ +H++HL +V +VLR+ +LY NLKK TFC +++VFLGFV
Sbjct: 562  AFIGIFVIVYFDDILVYSESLREHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFV 621

Query: 1776 VSSQGISVDEEKVRAIKDWPTPKNANEVRSFHGLASFYRRFVQDFSSIAAPLNELXXXXX 1955
            VS+ G+ VDEEKV+AI+DWP+PK   EVRSFHGLA FYRRF +DFS+I APL E+     
Sbjct: 622  VSADGVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEVMKKDV 681

Query: 1956 XXXXXXXHDQAFQTLKDKLTNAPLLCLPNFDKAFEIECDASGIGVGAVLMQDSKPIAYFS 2135
                    ++AFQ+LKDKLTNAP+L L  F K FEIECDASGIG+GAVLMQD K IA+FS
Sbjct: 682  GFKWEKAQEEAFQSLKDKLTNAPVLILSEFLKTFEIECDASGIGIGAVLMQDQKLIAFFS 741

Query: 2136 EKLSGAALNYPTYDKELYALVRTLRTWQHYLWPREFIIHSDHESLKFLKTQGKLNKRHAK 2315
            EKL GA LNYPTYDKELYALVR L+ WQHYLWP+ F+IH+DHESLK LK Q KLNKRHA+
Sbjct: 742  EKLGGATLNYPTYDKELYALVRALQRWQHYLWPKVFVIHTDHESLKHLKGQQKLNKRHAR 801

Query: 2316 WLEFIKTFPYVIKYKRGKENVVADALSRRYVLLTSLQTKLLGFELIKDLYANDSDFSQVW 2495
            W+EFI+TF YVIKYK+GK+NVVADALS+RY LL++L  KL+GFE IK++Y  D DF +V+
Sbjct: 802  WVEFIETFAYVIKYKKGKDNVVADALSQRYTLLSTLNVKLMGFEQIKEVYETDHDFQEVY 861

Query: 2496 NACAKCAFGDFYRHEGFLFKKDKLCVPNCSVRELLVRESHGGGLMGHFGVLKTLDILREH 2675
             AC K A G ++R + FLF +++LCVPNCS+R+L VRE+HGGGLMGHFG+ KTL+++ EH
Sbjct: 862  KACEKFASGRYFRQDKFLFYENRLCVPNCSLRDLFVREAHGGGLMGHFGIAKTLEVMTEH 921

Query: 2676 FYWPLIKHDVQSVCDKCITCRQAKSKIRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNG 2855
            F WP +K DV+ +C +C TC+QAKSKI+P+GLYTPLP+P  PW DISMDFV+GLPRT  G
Sbjct: 922  FRWPHMKCDVKRICGRCNTCKQAKSKIQPNGLYTPLPIPKHPWNDISMDFVMGLPRT--G 979

Query: 2856 KDSIFVVVDKF 2888
            KDSIFVV   F
Sbjct: 980  KDSIFVVYSPF 990



 Score =  152 bits (383), Expect = 1e-33
 Identities = 66/107 (61%), Positives = 86/107 (80%)
 Frame = +3

Query: 3237 FSPFEIVYGFNPLTPVDILPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNEQYAKQA 3416
            +SPF+IVYGFNP++P D++PLP +E  ++DGKKKA+ V+ +H   R NI+ K + YAKQA
Sbjct: 987  YSPFQIVYGFNPISPFDLIPLPLSERVSIDGKKKAELVQQIHENARRNIEEKTKLYAKQA 1046

Query: 3417 NKGRLKVIFHPGDWVWVHLRKERFPTQRKSKLQPRGDGPFQVLERIN 3557
            NKGR + IF  GD VW+HLRKERFP QRKSKL PR DGPF++++RIN
Sbjct: 1047 NKGRREQIFEVGDMVWIHLRKERFPAQRKSKLMPRIDGPFKIIKRIN 1093


>ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prunus persica]
            gi|462402874|gb|EMJ08431.1| hypothetical protein
            PRUPE_ppa026856mg [Prunus persica]
          Length = 1493

 Score = 1086 bits (2809), Expect = 0.0
 Identities = 554/1126 (49%), Positives = 750/1126 (66%), Gaps = 9/1126 (0%)
 Frame = +3

Query: 207  CFRCQGFGHIASECPNKRV--MVVLANGDIESASSSDNEMPPLEDCSDVEVEEPVHGDLL 380
            C+RCQ  GH ++ CP ++    +  A+ D E     +N+    E      VEE +    L
Sbjct: 362  CYRCQKPGHRSNVCPERKQANFIEEADEDEEKDEVGENDYAGAE----FAVEEGIEKITL 417

Query: 381  VTRRALSIQPKDEGDEEQREHIFHTRCHVKDKVCTLIIDSGSCTNVASTLLVEKLNLKWQ 560
            V +R L + PK+EG   QR +IF + C +K+KVC +I+D+GSC N  S  LVE L L  +
Sbjct: 418  VLQRVL-LAPKEEG---QRHNIFRSLCSIKNKVCDVIVDNGSCENFVSKKLVEYLQLSTE 473

Query: 561  KLPKPYKLQWLNDCGEVKVNKQVRVPFSIGK-YVDEVICDVAPMHAGHILLGRPWQFDRR 737
                PY L W+     V+V +  RVP SIGK Y D+V+CDV  M A HILLGRPWQFD  
Sbjct: 474  PHVSPYSLGWVKKGPSVRVAETCRVPLSIGKHYRDDVLCDVIDMDACHILLGRPWQFDVD 533

Query: 738  VSHDGYKNCYSFVMNNRKIILAPLKPLQAYEDQ-----VRIASECKKREKQRCEQKGEQS 902
             +  G  N   F  NNRKI +A  +P +  E +       I++E +  E  + E +GE  
Sbjct: 534  ATFKGRDNVILFSWNNRKIAMATTQPSRKQELRSSSFLTLISNEQELNEAVK-EAEGE-G 591

Query: 903  EQPEEKNKVLSVLVDKYDVKSVMIARPQVQVLMYKDVYFSTDDLNXXXXXXXXXXXQDFE 1082
            + P++  ++LS                                               F+
Sbjct: 592  DIPQDVQQILS----------------------------------------------QFQ 605

Query: 1083 DLFPEEIPHGLPPLRGIEHQIDFIPGSAIPNRPAYRANPEKTKEIQRQVDELLQKGFVRE 1262
            +L  E +P+ LPP+R I+H+ID + G+++PN P YR +P++   ++ Q++ELL+KGF+RE
Sbjct: 606  ELLSENLPNELPPMRDIQHRIDLVHGASLPNLPHYRMSPKENDILREQIEELLRKGFIRE 665

Query: 1263 SLSPCSVPVLLVPKKDGTWRMCVDCRAINKITVKYRHHIPRLDDMFDELHGSRLFSKIDL 1442
            SLSPC+VPVLLVPKKD TWRMCVD RA+NKI VKYR  IPRL+D+ D L GS++FSKIDL
Sbjct: 666  SLSPCAVPVLLVPKKDKTWRMCVDSRAVNKIKVKYRFSIPRLEDILDVLSGSKVFSKIDL 725

Query: 1443 KNGYYQIRMKEGDEWKTAFKTRYGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFMGKFVVV 1622
            ++GY+QIR++ GDEWKTAFK++ GL+EWLVMPFGL+NAPSTFMRLMN VLR F+G FVVV
Sbjct: 726  RSGYHQIRIRPGDEWKTAFKSKDGLFEWLVMPFGLSNAPSTFMRLMNQVLRPFIGSFVVV 785

Query: 1623 YFDDILVYSKNVDDHVKHLHAVFSVLREHQLYVNLKKYTFCMESVVFLGFVVSSQGISVD 1802
            YFDDIL+YS   ++H+ HL  V  VLRE++LYVNLKK TFC   ++FLGFVV   GI VD
Sbjct: 786  YFDDILIYSTTKEEHLVHLRQVLDVLRENKLYVNLKKCTFCTNKLLFLGFVVGENGIQVD 845

Query: 1803 EEKVRAIKDWPTPKNANEVRSFHGLASFYRRFVQDFSSIAAPLNELXXXXXXXXXXXXHD 1982
            +EK++AI DWP PK  +EVRSFHGLA+FY RFV+ FSSIAAP+ E              +
Sbjct: 846  DEKIKAILDWPAPKTVSEVRSFHGLATFYMRFVRHFSSIAAPITE-CLKKGRFSWGEEQE 904

Query: 1983 QAFQTLKDKLTNAPLLCLPNFDKAFEIECDASGIGVGAVLMQDSKPIAYFSEKLSGAALN 2162
            ++F  +K+KL  AP+L LPNF+K FE+ECDASG+GVGAVL+QD +P+A+FSEKLS A   
Sbjct: 905  RSFADIKEKLCTAPVLALPNFEKVFEVECDASGVGVGAVLLQDKRPVAFFSEKLSDARQK 964

Query: 2163 YPTYDKELYALVRTLRTWQHYLWPREFIIHSDHESLKFLKTQGKLNKRHAKWLEFIKTFP 2342
            + TYD+E YA+VR L+ W+HYL  +EF++ +DH++LK++ +Q  ++K HA+W+ F++ F 
Sbjct: 965  WSTYDQEFYAVVRALKQWEHYLIQKEFVLFTDHQALKYINSQKNIDKMHARWVTFLQKFS 1024

Query: 2343 YVIKYKRGKENVVADALSRRYVLLTSLQTKLLGFELIKDLYANDSDFSQVWNACA-KCAF 2519
            +VIK+  GK N VADALSRR  LL +L  +++GFE +K+LY  D DF ++W  C  +   
Sbjct: 1025 FVIKHTSGKTNRVADALSRRASLLITLTQEVVGFECLKELYEGDDDFREIWTKCTNQEPM 1084

Query: 2520 GDFYRHEGFLFKKDKLCVPNCSVRELLVRESHGGGLMGHFGVLKTLDILREHFYWPLIKH 2699
             D++  EG+LFK ++LC+P  S+RE L+R+ HGGGL GH G  KT+  + E FYWP +K 
Sbjct: 1085 TDYFLTEGYLFKGNQLCIPVSSLREKLIRDLHGGGLSGHLGRDKTIAGMEERFYWPQLKR 1144

Query: 2700 DVQSVCDKCITCRQAKSKIRPHGLYTPLPVPNQPWTDISMDFVLGLPRTQNGKDSIFVVV 2879
            DV ++  KC TC+ +K +++  GLY PLPVPN  W D++MDFVLG PRTQ   DS+FVV 
Sbjct: 1145 DVGTIVRKCYTCQTSKGQVQNTGLYMPLPVPNDIWQDLAMDFVLGFPRTQRRVDSVFVVA 1204

Query: 2880 DKFSKMSHFIACTKTNDATHIAELFFKEVVRLHGLPKSIVSDRDVKFLSYFWRTLWSKLG 3059
            D+FSKM+HFIAC KT DA++IA+LFF+EVVRLHG+P SI SDRD KFLS+FW TLW   G
Sbjct: 1205 DRFSKMAHFIACKKTADASNIAKLFFREVVRLHGVPTSITSDRDTKFLSHFWITLWRLFG 1264

Query: 3060 TKLLFSTVAHPQTDGQTEVVNRTLTTLLRAIIQKNLKQWEKCLPHIEFAYNRTIHSTTSF 3239
            T L  S+ AHPQTDGQTEV NRTL  ++R++  +  KQW+  LP +EFAYN  +HS T  
Sbjct: 1265 TTLNRSSTAHPQTDGQTEVTNRTLGNMVRSVCGEKPKQWDYALPQMEFAYNSAVHSATGK 1324

Query: 3240 SPFEIVYGFNPLTPVDILPLPTNEHANLDGKKKADFVKDLHAKVRANIDRKNEQYAKQAN 3419
            SPF IVY   P   VD++ LP  +  ++  K  A+ V  +  +V+  +++ N +Y   A+
Sbjct: 1325 SPFSIVYTATPNHVVDLVKLPRGQQTSVAAKNLAEEVVAVRDEVKQKLEQTNAKYKAAAD 1384

Query: 3420 KGRLKVIFHPGDWVWVHLRKERFPTQRKSKLQPRGDGPFQVLERIN 3557
            + R   +F  GD V V LRKERFP    SKL+P+  GP++VL+RIN
Sbjct: 1385 RHRRVKVFQEGDSVMVFLRKERFPAGTYSKLKPKKYGPYKVLKRIN 1430