BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00009023
         (1607 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine...   492   e-136
ref|XP_002311995.2| hypothetical protein POPTR_0008s03540g [Popu...   490   e-136
ref|XP_007218062.1| hypothetical protein PRUPE_ppa006826mg [Prun...   488   e-135
ref|XP_004250054.1| PREDICTED: uncharacterized RNA pseudouridine...   484   e-134
ref|XP_006485600.1| PREDICTED: uncharacterized protein LOC102619...   481   e-133
ref|XP_006361680.1| PREDICTED: uncharacterized protein LOC102601...   481   e-133
ref|XP_006436494.1| hypothetical protein CICLE_v10031516mg [Citr...   481   e-133
gb|EYU32425.1| hypothetical protein MIMGU_mgv1a007390mg [Mimulus...   478   e-132
ref|XP_007009964.1| Pseudouridine synthase family protein isofor...   473   e-130
gb|EXB96209.1| putative RNA pseudouridine synthase [Morus notabi...   471   e-130
ref|XP_004308770.1| PREDICTED: uncharacterized RNA pseudouridine...   469   e-129
ref|XP_007009963.1| Pseudouridine synthase family protein isofor...   466   e-128
ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine...   465   e-128
emb|CBI31423.3| unnamed protein product [Vitis vinifera]              464   e-128
ref|XP_006411139.1| hypothetical protein EUTSA_v10016747mg [Eutr...   463   e-128
ref|XP_006294188.1| hypothetical protein CARUB_v10023183mg, part...   460   e-127
ref|XP_002879786.1| pseudouridine synthase family protein [Arabi...   459   e-126
ref|XP_004496237.1| PREDICTED: uncharacterized RNA pseudouridine...   459   e-126
ref|NP_181447.2| protein SUPPRESSOR OF VARIEGATION 1 [Arabidopsi...   455   e-125
gb|AFK43008.1| unknown [Medicago truncatula]                          448   e-123

>ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform
            1 [Vitis vinifera]
          Length = 393

 Score =  492 bits (1267), Expect = e-136
 Identities = 255/401 (63%), Positives = 299/401 (74%)
 Frame = +1

Query: 82   FSSFHISPSVFSKPRLSCRNFRXXXXXXXXXXXXXXXXFGSSTKQTLKPKPNPEDSSKQD 261
            FSSFH+S     +P L+ R+FR                     + ++ P   P  +S + 
Sbjct: 19   FSSFHLS-----RPSLARRHFRTIP-----------------VRSSISP---PSTTSAEF 53

Query: 262  QLIGLXXXXXXXXPAVPLLIPWIVRGEDGKLKLQSTPPVRFLHAMDXXXXXXXXXXXXXX 441
             +            +  LLIPWIVR E+G L++QSTPP R+L  M               
Sbjct: 54   NISFAPKSKNPKPQSETLLIPWIVRDENGNLRVQSTPPERYLQDM----AKAKALSAKKK 109

Query: 442  XXXXXXXXAVLTPEPKYSKAARRFYNQNFRDPPQRLSKVLASAGVASRRSSEELIFEGRV 621
                      +  EPKYSKAARRFYN+NFRDPPQRLSKVLA+AGVASRR+SEELIFEGRV
Sbjct: 110  KKKEESTARAVAVEPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRV 169

Query: 622  TVNGSVCNTPQTRVDIGKDLIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKESKSVFS 801
            TVNGSVCNTPQTRVD  +D+IYVNGNR+ KKLPPKVYLALNKPKGYICSSGEKESKSV  
Sbjct: 170  TVNGSVCNTPQTRVDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLC 229

Query: 802  LFDDYMKSWDKRNPGLPKPRLFTVGRLDVGTTGLIIVTNDGDFAQRVSHPSSNLSKEYIA 981
            LFDDY+KSW+K+NPG+PKPR+FTVGRLDV TTGLII+TNDGDFAQ++SHPSS LSKEYIA
Sbjct: 230  LFDDYLKSWNKQNPGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIA 289

Query: 982  VIDGLVHKRHLVIISEGTLIEGIQCTPDFVELLPQSPDASRPRLRIVVHEGRNHEVRELV 1161
             IDG+V+KRHL+ ISEGT+IEG+ CTPD VELLP  P+ S+PRLR+VVHEGRNHEVRELV
Sbjct: 290  TIDGVVNKRHLIAISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELV 349

Query: 1162 KNAGLKLHSLKRTRIGGYKLPSDLGLGKHVELKPGDVKLLG 1284
            K+AGL++HSLKR RIGG++LPSDLG GKHVELK GD+K LG
Sbjct: 350  KSAGLQIHSLKRIRIGGFRLPSDLGHGKHVELKQGDLKALG 390


>ref|XP_002311995.2| hypothetical protein POPTR_0008s03540g [Populus trichocarpa]
            gi|550332354|gb|EEE89362.2| hypothetical protein
            POPTR_0008s03540g [Populus trichocarpa]
          Length = 397

 Score =  490 bits (1261), Expect = e-136
 Identities = 248/354 (70%), Positives = 275/354 (77%), Gaps = 1/354 (0%)
 Frame = +1

Query: 226  PKPNPE-DSSKQDQLIGLXXXXXXXXPAVPLLIPWIVRGEDGKLKLQSTPPVRFLHAMDX 402
            PKP P+  ++ Q     L        P   L IPWIVRGEDG LKLQS PP R +HA+  
Sbjct: 47   PKPKPKLPANLQTDAASLSL------PPGQLFIPWIVRGEDGNLKLQSNPPARLIHAIAD 100

Query: 403  XXXXXXXXXXXXXXXXXXXXXAVLTPEPKYSKAARRFYNQNFRDPPQRLSKVLASAGVAS 582
                                 A L  EP  SKAARRFYN+NFRD  QRLSKVLA+AGVAS
Sbjct: 101  AKTQPKKKKDKVKKESSGNVKAKLEAEPTRSKAARRFYNENFRDQAQRLSKVLAAAGVAS 160

Query: 583  RRSSEELIFEGRVTVNGSVCNTPQTRVDIGKDLIYVNGNRISKKLPPKVYLALNKPKGYI 762
            RRSSE LIFEG+VTVNGSVCNTPQTRVD G+D IYVNGNR+ KKLPPK+Y+ALNKPKGYI
Sbjct: 161  RRSSEALIFEGKVTVNGSVCNTPQTRVDPGRDAIYVNGNRLPKKLPPKIYIALNKPKGYI 220

Query: 763  CSSGEKESKSVFSLFDDYMKSWDKRNPGLPKPRLFTVGRLDVGTTGLIIVTNDGDFAQRV 942
            CS GEKESKSV  L DDY +SWDKRNPGLPKPRLFTVGRLDV TTGLIIVTNDGDFAQ++
Sbjct: 221  CSLGEKESKSVMCLLDDYFQSWDKRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQQI 280

Query: 943  SHPSSNLSKEYIAVIDGLVHKRHLVIISEGTLIEGIQCTPDFVELLPQSPDASRPRLRIV 1122
            +HPSSNLSKEYIA +DG+V KRHL  +SEGT+IEG++C PD VELLPQ PD  RPRLRIV
Sbjct: 281  AHPSSNLSKEYIATVDGVVSKRHLFAVSEGTVIEGVRCVPDSVELLPQQPDRPRPRLRIV 340

Query: 1123 VHEGRNHEVRELVKNAGLKLHSLKRTRIGGYKLPSDLGLGKHVELKPGDVKLLG 1284
            VHEGRNHEVRELVKNAGL++HSLKR RIGG++LPSDLGLGKH ELK  D+K LG
Sbjct: 341  VHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPSDLGLGKHAELKQTDLKTLG 394


>ref|XP_007218062.1| hypothetical protein PRUPE_ppa006826mg [Prunus persica]
            gi|462414524|gb|EMJ19261.1| hypothetical protein
            PRUPE_ppa006826mg [Prunus persica]
          Length = 393

 Score =  488 bits (1256), Expect = e-135
 Identities = 260/405 (64%), Positives = 299/405 (73%), Gaps = 9/405 (2%)
 Frame = +1

Query: 97   ISPSVFSKPRLSCRNFRXXXXXXXXXXXXXXXXFGSSTKQTL---------KPKPNPEDS 249
            +S S+FSKP LS    R                  SS+  +L         KPKP  +  
Sbjct: 12   LSSSLFSKPSLSLIPIRTLPRITCSLST-------SSSSSSLEFNITFAPSKPKPKLKPD 64

Query: 250  SKQDQLIGLXXXXXXXXPAVPLLIPWIVRGEDGKLKLQSTPPVRFLHAMDXXXXXXXXXX 429
            S +     L         A  L+IPWIVRGEDG LKLQS PP RFL A++          
Sbjct: 65   SAEPDPEAL---------AGQLIIPWIVRGEDGNLKLQSHPPARFLQAIETKSKTKKKKE 115

Query: 430  XXXXXXXXXXXXAVLTPEPKYSKAARRFYNQNFRDPPQRLSKVLASAGVASRRSSEELIF 609
                         V T EPKYSKAARRFYN+NFRD  QRLSKVLA+AGVASRRSSE+LIF
Sbjct: 116  GAEKR--------VPTAEPKYSKAARRFYNENFRDASQRLSKVLAAAGVASRRSSEQLIF 167

Query: 610  EGRVTVNGSVCNTPQTRVDIGKDLIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKESK 789
            +G+VTVNGSVCNTPQ+RVD G+D+IYVNGNR+ K+LPPKVYLALNKPKGYIC+SGE  +K
Sbjct: 168  DGKVTVNGSVCNTPQSRVDPGRDIIYVNGNRLPKRLPPKVYLALNKPKGYICASGE--NK 225

Query: 790  SVFSLFDDYMKSWDKRNPGLPKPRLFTVGRLDVGTTGLIIVTNDGDFAQRVSHPSSNLSK 969
            SV SLF+DY+K+WDKRN G+P+PRLFTVGRLDV TTGLIIVTNDGDFAQ++SHPSSNLSK
Sbjct: 226  SVLSLFEDYLKTWDKRNSGIPRPRLFTVGRLDVATTGLIIVTNDGDFAQKISHPSSNLSK 285

Query: 970  EYIAVIDGLVHKRHLVIISEGTLIEGIQCTPDFVELLPQSPDASRPRLRIVVHEGRNHEV 1149
            EYIA I+G+V KRHL+ ISEGT+IEG+ CTPD VELLPQ PD SRPRLRIVVHEGRNHEV
Sbjct: 286  EYIAAIEGVVSKRHLLAISEGTVIEGVHCTPDSVELLPQQPDMSRPRLRIVVHEGRNHEV 345

Query: 1150 RELVKNAGLKLHSLKRTRIGGYKLPSDLGLGKHVELKPGDVKLLG 1284
            RELVKNAGL++HSLKR RIGG++LPSDLGLGKH+ LK GD+  LG
Sbjct: 346  RELVKNAGLEIHSLKRVRIGGFRLPSDLGLGKHMALKQGDLSALG 390


>ref|XP_004250054.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Solanum lycopersicum]
          Length = 414

 Score =  484 bits (1245), Expect = e-134
 Identities = 249/363 (68%), Positives = 277/363 (76%), Gaps = 5/363 (1%)
 Frame = +1

Query: 211  KQTLKPKP-----NPEDSSKQDQLIGLXXXXXXXXPAVPLLIPWIVRGEDGKLKLQSTPP 375
            K   KP+P     NP   S  D +  L            L IPWIVR E G L LQSTPP
Sbjct: 56   KPKTKPEPAIPIINPNSDSNSDSVPNLDAEVGDQ-----LYIPWIVRDEKGNLTLQSTPP 110

Query: 376  VRFLHAMDXXXXXXXXXXXXXXXXXXXXXXAVLTPEPKYSKAARRFYNQNFRDPPQRLSK 555
             R LH M                        V TPEPK+SKAARRFYN+NFRDPPQRLSK
Sbjct: 111  ARLLHEM--ANASTGKKKKKGKEVASKAATVVPTPEPKHSKAARRFYNENFRDPPQRLSK 168

Query: 556  VLASAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDIGKDLIYVNGNRISKKLPPKVYL 735
            VLA+AGVASRRSSEELIF+GRVTVNGSVC TPQT+VD  +D+IYVNGNR+ KKLP KVYL
Sbjct: 169  VLAAAGVASRRSSEELIFQGRVTVNGSVCKTPQTKVDPARDVIYVNGNRLPKKLPTKVYL 228

Query: 736  ALNKPKGYICSSGEKESKSVFSLFDDYMKSWDKRNPGLPKPRLFTVGRLDVGTTGLIIVT 915
            ALNKPKGYICSSGEKE+KSV SLFDD++KSWDKR+PG PKPRLFTVGRLDV TTGLIIVT
Sbjct: 229  ALNKPKGYICSSGEKETKSVMSLFDDFIKSWDKRHPGQPKPRLFTVGRLDVATTGLIIVT 288

Query: 916  NDGDFAQRVSHPSSNLSKEYIAVIDGLVHKRHLVIISEGTLIEGIQCTPDFVELLPQSPD 1095
            NDG+F  ++SHPSSNLSKEYIA IDG VHKRHL+ ISEGT+I+G+ CTPD VELLP  PD
Sbjct: 289  NDGEFTHQISHPSSNLSKEYIATIDGEVHKRHLIAISEGTIIDGVHCTPDNVELLPGQPD 348

Query: 1096 ASRPRLRIVVHEGRNHEVRELVKNAGLKLHSLKRTRIGGYKLPSDLGLGKHVELKPGDVK 1275
             SRPRLRIVVHEGRNHEVRELVKNAGL+L +LKR RIGG++LP+DL LGKHVEL   ++K
Sbjct: 349  LSRPRLRIVVHEGRNHEVRELVKNAGLQLRALKRIRIGGFRLPADLALGKHVELNQANLK 408

Query: 1276 LLG 1284
             LG
Sbjct: 409  ALG 411


>ref|XP_006485600.1| PREDICTED: uncharacterized protein LOC102619728 [Citrus sinensis]
          Length = 401

 Score =  481 bits (1237), Expect = e-133
 Identities = 242/327 (74%), Positives = 266/327 (81%), Gaps = 3/327 (0%)
 Frame = +1

Query: 313  LLIPWIVRGEDGKLKLQSTPPVRFLHAM-DXXXXXXXXXXXXXXXXXXXXXXAVLTPE-- 483
            L IPWIVRGEDG LKLQ+ PP R +H + D                      A   P+  
Sbjct: 72   LFIPWIVRGEDGNLKLQTHPPARLVHTLADAKTQNLKVNKKKNDTSAAAAAAAAGGPKAA 131

Query: 484  PKYSKAARRFYNQNFRDPPQRLSKVLASAGVASRRSSEELIFEGRVTVNGSVCNTPQTRV 663
            PK SKAARRFYN NFRD P+RLSKVLA+AGVASRRSSEELIF+G+VTVNGSVCNTPQTRV
Sbjct: 132  PKLSKAARRFYNDNFRDTPERLSKVLAAAGVASRRSSEELIFQGQVTVNGSVCNTPQTRV 191

Query: 664  DIGKDLIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKESKSVFSLFDDYMKSWDKRNP 843
            D  +D+IYVNG R+ KKLPPKVYLALNKPKGYICS+GEKE KSV SLFDDY+KSWDKRNP
Sbjct: 192  DPARDIIYVNGKRLPKKLPPKVYLALNKPKGYICSAGEKEVKSVMSLFDDYLKSWDKRNP 251

Query: 844  GLPKPRLFTVGRLDVGTTGLIIVTNDGDFAQRVSHPSSNLSKEYIAVIDGLVHKRHLVII 1023
            GLP+PRLFTVGRLDV TTGLIIVTNDGDFAQ VSHPSS L KEYIA IDG V+KRHL+ I
Sbjct: 252  GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 311

Query: 1024 SEGTLIEGIQCTPDFVELLPQSPDASRPRLRIVVHEGRNHEVRELVKNAGLKLHSLKRTR 1203
            SEGT+IEG  CTPD VELLP  PD  RPR+RIVVHEGRNHEVRELVKNAGLKL+SLKR R
Sbjct: 312  SEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 371

Query: 1204 IGGYKLPSDLGLGKHVELKPGDVKLLG 1284
            IGG++LPSDLG+G HVELK  D+KL+G
Sbjct: 372  IGGFRLPSDLGIGMHVELKQSDLKLMG 398


>ref|XP_006361680.1| PREDICTED: uncharacterized protein LOC102601559 [Solanum tuberosum]
          Length = 413

 Score =  481 bits (1237), Expect = e-133
 Identities = 252/375 (67%), Positives = 282/375 (75%), Gaps = 14/375 (3%)
 Frame = +1

Query: 202  SSTKQTL-----KPKPNPEDSSKQDQLIGLXXXXXXXXPAVP---------LLIPWIVRG 339
            SSTK  +     KPKP P    K +  I +         +VP         L IPWIVR 
Sbjct: 42   SSTKFNITFAPPKPKPKP----KPEPAIPINSDSDSDSNSVPNLEAEIGDQLYIPWIVRD 97

Query: 340  EDGKLKLQSTPPVRFLHAMDXXXXXXXXXXXXXXXXXXXXXXAVLTPEPKYSKAARRFYN 519
            E G L LQSTPP R LH M                        V TPEPK+SKAARRFYN
Sbjct: 98   EKGNLTLQSTPPARLLHEM--ANASTSKKKKKGKEVASKAATVVPTPEPKHSKAARRFYN 155

Query: 520  QNFRDPPQRLSKVLASAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDIGKDLIYVNGN 699
            +NFRDPPQRLSKVLA+AGVASRRSSEELIF+GRVTVNGSVC TPQT+VD  +D+IYVNGN
Sbjct: 156  ENFRDPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCKTPQTKVDPARDVIYVNGN 215

Query: 700  RISKKLPPKVYLALNKPKGYICSSGEKESKSVFSLFDDYMKSWDKRNPGLPKPRLFTVGR 879
            R+ KKLP KVYLALNKPKGYICSSGEKE+KSV SLFDD++KSWDKR+PG PKPRLFTVGR
Sbjct: 216  RLPKKLPTKVYLALNKPKGYICSSGEKETKSVMSLFDDFIKSWDKRHPGQPKPRLFTVGR 275

Query: 880  LDVGTTGLIIVTNDGDFAQRVSHPSSNLSKEYIAVIDGLVHKRHLVIISEGTLIEGIQCT 1059
            LDV TTGLIIVTNDG+F  ++SHPSSNLSKEYIA IDG VHKRHL+ ISEGT+I+G+ C 
Sbjct: 276  LDVATTGLIIVTNDGEFTHQISHPSSNLSKEYIATIDGEVHKRHLIAISEGTVIDGVHCI 335

Query: 1060 PDFVELLPQSPDASRPRLRIVVHEGRNHEVRELVKNAGLKLHSLKRTRIGGYKLPSDLGL 1239
            PD VELLP  PD SRPRLRIVVHEGRNHEVRELVKNAGL+L +LKR RIGG++LP+DL L
Sbjct: 336  PDNVELLPGQPDLSRPRLRIVVHEGRNHEVRELVKNAGLQLRALKRIRIGGFRLPADLAL 395

Query: 1240 GKHVELKPGDVKLLG 1284
            GKHVEL   ++K LG
Sbjct: 396  GKHVELNQANLKALG 410


>ref|XP_006436494.1| hypothetical protein CICLE_v10031516mg [Citrus clementina]
            gi|557538690|gb|ESR49734.1| hypothetical protein
            CICLE_v10031516mg [Citrus clementina]
          Length = 451

 Score =  481 bits (1237), Expect = e-133
 Identities = 242/327 (74%), Positives = 266/327 (81%), Gaps = 3/327 (0%)
 Frame = +1

Query: 313  LLIPWIVRGEDGKLKLQSTPPVRFLHAM-DXXXXXXXXXXXXXXXXXXXXXXAVLTPE-- 483
            L IPWIVRGEDG LKLQ+ PP R +H + D                      A   P+  
Sbjct: 122  LFIPWIVRGEDGNLKLQTHPPARLVHTLADAKTQNLKVNKKKNDTSAAAAAAAAGGPKAA 181

Query: 484  PKYSKAARRFYNQNFRDPPQRLSKVLASAGVASRRSSEELIFEGRVTVNGSVCNTPQTRV 663
            PK SKAARRFYN NFRD P+RLSKVLA+AGVASRRSSEELIF+G+VTVNGSVCNTPQTRV
Sbjct: 182  PKLSKAARRFYNDNFRDTPERLSKVLAAAGVASRRSSEELIFQGQVTVNGSVCNTPQTRV 241

Query: 664  DIGKDLIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKESKSVFSLFDDYMKSWDKRNP 843
            D  +D+IYVNG R+ KKLPPKVYLALNKPKGYICS+GEKE KSV SLFDDY+KSWDKRNP
Sbjct: 242  DPARDIIYVNGKRLPKKLPPKVYLALNKPKGYICSAGEKEVKSVMSLFDDYLKSWDKRNP 301

Query: 844  GLPKPRLFTVGRLDVGTTGLIIVTNDGDFAQRVSHPSSNLSKEYIAVIDGLVHKRHLVII 1023
            GLP+PRLFTVGRLDV TTGLIIVTNDGDFAQ VSHPSS L KEYIA IDG V+KRHL+ I
Sbjct: 302  GLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAI 361

Query: 1024 SEGTLIEGIQCTPDFVELLPQSPDASRPRLRIVVHEGRNHEVRELVKNAGLKLHSLKRTR 1203
            SEGT+IEG  CTPD VELLP  PD  RPR+RIVVHEGRNHEVRELVKNAGLKL+SLKR R
Sbjct: 362  SEGTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLR 421

Query: 1204 IGGYKLPSDLGLGKHVELKPGDVKLLG 1284
            IGG++LPSDLG+G HVELK  D+KL+G
Sbjct: 422  IGGFRLPSDLGIGMHVELKQSDLKLMG 448


>gb|EYU32425.1| hypothetical protein MIMGU_mgv1a007390mg [Mimulus guttatus]
          Length = 409

 Score =  478 bits (1231), Expect = e-132
 Identities = 248/401 (61%), Positives = 292/401 (72%)
 Frame = +1

Query: 82   FSSFHISPSVFSKPRLSCRNFRXXXXXXXXXXXXXXXXFGSSTKQTLKPKPNPEDSSKQD 261
            F++ H+S + F  PR   R+FR                    T    KPKP  + S   +
Sbjct: 11   FTTLHLSKTSFILPR---RHFRTVITSSLSTTTTTAAAEFKITFAPPKPKPQLQKSDPTN 67

Query: 262  QLIGLXXXXXXXXPAVPLLIPWIVRGEDGKLKLQSTPPVRFLHAMDXXXXXXXXXXXXXX 441
                             LL+PWI+R E+G + LQ  PP RFL AM               
Sbjct: 68   A--------PGIDSGDQLLVPWILRDENGNISLQKMPPQRFLKAM-ANESTQKKKKRDDK 118

Query: 442  XXXXXXXXAVLTPEPKYSKAARRFYNQNFRDPPQRLSKVLASAGVASRRSSEELIFEGRV 621
                    A+   EPKYSKAARRFYN+ FR+PPQRL+KVLA+AGVASRRSSEELIF+G+V
Sbjct: 119  TPAKKAKAAMQYVEPKYSKAARRFYNERFREPPQRLAKVLATAGVASRRSSEELIFQGKV 178

Query: 622  TVNGSVCNTPQTRVDIGKDLIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKESKSVFS 801
            TVNGSVCNTPQTRVD  +D+IYVNG+R++KKLPPKVYLALNKPKGYICS+GE+E+KSVFS
Sbjct: 179  TVNGSVCNTPQTRVDPARDIIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEEETKSVFS 238

Query: 802  LFDDYMKSWDKRNPGLPKPRLFTVGRLDVGTTGLIIVTNDGDFAQRVSHPSSNLSKEYIA 981
            LFDD+MK WDKRNPG+PKPRLFTVGRLDV TTGLIIVTNDG+FA +VSHPSSNLSKEYIA
Sbjct: 239  LFDDFMKGWDKRNPGIPKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIA 298

Query: 982  VIDGLVHKRHLVIISEGTLIEGIQCTPDFVELLPQSPDASRPRLRIVVHEGRNHEVRELV 1161
             I+G V KR+L+ ISEGT +EG++C PD VELLPQ PD SRPRLRIVVHEGRNHEVRELV
Sbjct: 299  TINGAVTKRNLLTISEGTFVEGVKCVPDSVELLPQQPDISRPRLRIVVHEGRNHEVRELV 358

Query: 1162 KNAGLKLHSLKRTRIGGYKLPSDLGLGKHVELKPGDVKLLG 1284
            KNAGL++H+LKR RIGG++LPSDL LGKH+EL P  ++ LG
Sbjct: 359  KNAGLQIHALKRIRIGGFRLPSDLALGKHIELTPAHMRALG 399


>ref|XP_007009964.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
            cacao] gi|508726877|gb|EOY18774.1| Pseudouridine synthase
            family protein isoform 2, partial [Theobroma cacao]
          Length = 398

 Score =  473 bits (1217), Expect = e-130
 Identities = 236/327 (72%), Positives = 263/327 (80%), Gaps = 3/327 (0%)
 Frame = +1

Query: 313  LLIPWIVRGEDGKLKLQSTPPVRFLHAMDXXXXXXXXXXXXXXXXXXXXXXAV---LTPE 483
            L IPWIVRGEDG LKLQ+ PP R +HA+                       AV       
Sbjct: 69   LFIPWIVRGEDGNLKLQAHPPARLIHALADAKTQKPKKKVDKAVKKKKEISAVGNASVEP 128

Query: 484  PKYSKAARRFYNQNFRDPPQRLSKVLASAGVASRRSSEELIFEGRVTVNGSVCNTPQTRV 663
            PK SKAARRFYN+NF +PPQRLSKVLA+AGVASRR SEELIF+G+VTVNGSVCN PQTRV
Sbjct: 129  PKLSKAARRFYNENFTEPPQRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCNAPQTRV 188

Query: 664  DIGKDLIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKESKSVFSLFDDYMKSWDKRNP 843
            D  KD+IYVNG+R+ KKLPPK+YLALNKPKGYICSSGEKE KSV  LF+DY+K WDK N 
Sbjct: 189  DPAKDIIYVNGSRLPKKLPPKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKRWDKMNR 248

Query: 844  GLPKPRLFTVGRLDVGTTGLIIVTNDGDFAQRVSHPSSNLSKEYIAVIDGLVHKRHLVII 1023
            G PKPRLFTVGRLDV TTGLIIVTNDGDFAQ++SHPSSNL+KEYIA IDG V KRHL+ I
Sbjct: 249  GSPKPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLNKEYIATIDGEVKKRHLIAI 308

Query: 1024 SEGTLIEGIQCTPDFVELLPQSPDASRPRLRIVVHEGRNHEVRELVKNAGLKLHSLKRTR 1203
            SEGT IEGI C PD VELLP+ PD SRPRLRIVVHEGRNHEVRELVKNAGL++HSLKR R
Sbjct: 309  SEGTEIEGIHCIPDSVELLPRQPDLSRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVR 368

Query: 1204 IGGYKLPSDLGLGKHVELKPGDVKLLG 1284
            IGG++LP+DLGLGKHVELK  D++ +G
Sbjct: 369  IGGFRLPADLGLGKHVELKQSDLRAMG 395


>gb|EXB96209.1| putative RNA pseudouridine synthase [Morus notabilis]
          Length = 404

 Score =  471 bits (1212), Expect = e-130
 Identities = 253/403 (62%), Positives = 286/403 (70%), Gaps = 3/403 (0%)
 Frame = +1

Query: 85   SSFHISPSVFSKPRLSCR-NFRXXXXXXXXXXXXXXXXFGSSTKQTLKPKPNPEDSSKQD 261
            S  H+S S+ S   LS R + R                F  S     KPKP PE +++ D
Sbjct: 11   SLHHLSSSLLSLSSLSLRPSIRHILPRVLCSLSSSTSEFNISFAPA-KPKPQPE-ATEVD 68

Query: 262  QLIGLXXXXXXXXPAVPLLIPWIVRGEDGKLKLQSTPPVRFLHAMDXXXXXXXXXXXXXX 441
             L G             L IPWI+RG+DG LKLQS PP R LHAM               
Sbjct: 69   SLFGADGSQ--------LFIPWIIRGDDGNLKLQSHPPARLLHAMAHADTKNSKKKKPTA 120

Query: 442  XXXXXXXXAV--LTPEPKYSKAARRFYNQNFRDPPQRLSKVLASAGVASRRSSEELIFEG 615
                           EPKYSKAARRFYN+NFR+  QRLSKVLA+AGVASRR+SEELI EG
Sbjct: 121  AEKKKKNDKADKSVAEPKYSKAARRFYNENFRESDQRLSKVLAAAGVASRRNSEELILEG 180

Query: 616  RVTVNGSVCNTPQTRVDIGKDLIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKESKSV 795
            RVTVNGSVCNTPQTRVD  KD+IYVNGNR+ K+LPPKVYLALNKPKGYICS G+K  KSV
Sbjct: 181  RVTVNGSVCNTPQTRVDPAKDVIYVNGNRLPKRLPPKVYLALNKPKGYICSVGDK--KSV 238

Query: 796  FSLFDDYMKSWDKRNPGLPKPRLFTVGRLDVGTTGLIIVTNDGDFAQRVSHPSSNLSKEY 975
             SLFDDY+K WDKRN G  KPRLFTVGRLDV TTGLIIVTNDGDFAQ++SHPSSNLSKEY
Sbjct: 239  MSLFDDYLKIWDKRNLGQSKPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLSKEY 298

Query: 976  IAVIDGLVHKRHLVIISEGTLIEGIQCTPDFVELLPQSPDASRPRLRIVVHEGRNHEVRE 1155
            IA I+G V K+HL++ISEGT I+G+ C PD VELLP  P+  RPRLR+VVH+GR HEVRE
Sbjct: 299  IATIEGTVSKKHLLVISEGTFIDGVHCVPDSVELLPNQPEMPRPRLRVVVHDGRKHEVRE 358

Query: 1156 LVKNAGLKLHSLKRTRIGGYKLPSDLGLGKHVELKPGDVKLLG 1284
            L+KNAGL++HSLKR RIGGY+LPSDLGLGKHVELK GD+  LG
Sbjct: 359  LMKNAGLEIHSLKRVRIGGYRLPSDLGLGKHVELKQGDLSALG 401


>ref|XP_004308770.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Fragaria vesca subsp. vesca]
          Length = 397

 Score =  469 bits (1208), Expect = e-129
 Identities = 248/393 (63%), Positives = 284/393 (72%)
 Frame = +1

Query: 106  SVFSKPRLSCRNFRXXXXXXXXXXXXXXXXFGSSTKQTLKPKPNPEDSSKQDQLIGLXXX 285
            S+F K  LS   FR                F  + K    P   P  SS   Q       
Sbjct: 14   SLFFKRSLSLTPFRTLPRLTCSSSLEFNITFAPAPKPKPDPNSLPASSSSSGQ------- 66

Query: 286  XXXXXPAVPLLIPWIVRGEDGKLKLQSTPPVRFLHAMDXXXXXXXXXXXXXXXXXXXXXX 465
                     L IPWIVRGEDGKLKLQS PP R LH M                       
Sbjct: 67   --------QLFIPWIVRGEDGKLKLQSHPPARLLHEM---AQADTKTKSKKNKDTAQKKQ 115

Query: 466  AVLTPEPKYSKAARRFYNQNFRDPPQRLSKVLASAGVASRRSSEELIFEGRVTVNGSVCN 645
             VLT EPK+SKAARRFYN+NFR+  QRLSKVLA+AGVASRRSSE+LIF+G+VTVNGSVCN
Sbjct: 116  RVLTAEPKHSKAARRFYNENFRES-QRLSKVLAAAGVASRRSSEQLIFDGKVTVNGSVCN 174

Query: 646  TPQTRVDIGKDLIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKESKSVFSLFDDYMKS 825
            TPQT VD G+D+IYVNGNR+ KKLPPKVYLALNKPKGYIC++GEK  KSV SLFDDY+KS
Sbjct: 175  TPQTPVDPGRDIIYVNGNRLPKKLPPKVYLALNKPKGYICAAGEK--KSVLSLFDDYLKS 232

Query: 826  WDKRNPGLPKPRLFTVGRLDVGTTGLIIVTNDGDFAQRVSHPSSNLSKEYIAVIDGLVHK 1005
            WDKRNPG P+PRLFTVGRLDV TTGLI+VTNDGDFAQ +SHPS+NL+KEYIAVI+G V K
Sbjct: 233  WDKRNPGTPRPRLFTVGRLDVATTGLIVVTNDGDFAQSISHPSANLTKEYIAVIEGSVSK 292

Query: 1006 RHLVIISEGTLIEGIQCTPDFVELLPQSPDASRPRLRIVVHEGRNHEVRELVKNAGLKLH 1185
            + L+ ISEGT+I+G+ CTPD VELLPQ P+ SR RLRIVVHEGRNHEVRELVK AGL++H
Sbjct: 293  KSLIAISEGTVIDGVHCTPDSVELLPQQPEISRSRLRIVVHEGRNHEVRELVKKAGLEIH 352

Query: 1186 SLKRTRIGGYKLPSDLGLGKHVELKPGDVKLLG 1284
            SLKR RIGG++LP++LGLG H+EL+ GD+  LG
Sbjct: 353  SLKRVRIGGFRLPTNLGLGTHMELRQGDLSALG 385


>ref|XP_007009963.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
            gi|508726876|gb|EOY18773.1| Pseudouridine synthase family
            protein isoform 1 [Theobroma cacao]
          Length = 453

 Score =  466 bits (1200), Expect = e-128
 Identities = 236/333 (70%), Positives = 263/333 (78%), Gaps = 9/333 (2%)
 Frame = +1

Query: 313  LLIPWIVRGEDGKLKLQSTPPVRFLHAMDXXXXXXXXXXXXXXXXXXXXXXAV---LTPE 483
            L IPWIVRGEDG LKLQ+ PP R +HA+                       AV       
Sbjct: 118  LFIPWIVRGEDGNLKLQAHPPARLIHALADAKTQKPKKKVDKAVKKKKEISAVGNASVEP 177

Query: 484  PKYSKAARRFYNQNFRDPPQRLSKVLASAGVASRRSSEELIFEGRVTVNGSVCNTPQ--- 654
            PK SKAARRFYN+NF +PPQRLSKVLA+AGVASRR SEELIF+G+VTVNGSVCN PQ   
Sbjct: 178  PKLSKAARRFYNENFTEPPQRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCNAPQASD 237

Query: 655  ---TRVDIGKDLIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKESKSVFSLFDDYMKS 825
               TRVD  KD+IYVNG+R+ KKLPPK+YLALNKPKGYICSSGEKE KSV  LF+DY+K 
Sbjct: 238  NLQTRVDPAKDIIYVNGSRLPKKLPPKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKR 297

Query: 826  WDKRNPGLPKPRLFTVGRLDVGTTGLIIVTNDGDFAQRVSHPSSNLSKEYIAVIDGLVHK 1005
            WDK N G PKPRLFTVGRLDV TTGLIIVTNDGDFAQ++SHPSSNL+KEYIA IDG V K
Sbjct: 298  WDKMNRGSPKPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLNKEYIATIDGEVKK 357

Query: 1006 RHLVIISEGTLIEGIQCTPDFVELLPQSPDASRPRLRIVVHEGRNHEVRELVKNAGLKLH 1185
            RHL+ ISEGT IEGI C PD VELLP+ PD SRPRLRIVVHEGRNHEVRELVKNAGL++H
Sbjct: 358  RHLIAISEGTEIEGIHCIPDSVELLPRQPDLSRPRLRIVVHEGRNHEVRELVKNAGLEIH 417

Query: 1186 SLKRTRIGGYKLPSDLGLGKHVELKPGDVKLLG 1284
            SLKR RIGG++LP+DLGLGKHVELK  D++ +G
Sbjct: 418  SLKRVRIGGFRLPADLGLGKHVELKQSDLRAMG 450


>ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cucumis sativus] gi|449490423|ref|XP_004158601.1|
            PREDICTED: uncharacterized RNA pseudouridine synthase
            aq_1464-like [Cucumis sativus]
          Length = 398

 Score =  465 bits (1197), Expect = e-128
 Identities = 233/324 (71%), Positives = 263/324 (81%)
 Frame = +1

Query: 313  LLIPWIVRGEDGKLKLQSTPPVRFLHAMDXXXXXXXXXXXXXXXXXXXXXXAVLTPEPKY 492
            L IPWIVRGEDG LKLQS PP RFLH++                         +T  PK+
Sbjct: 80   LFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVSAGKP--------ITEPPKH 131

Query: 493  SKAARRFYNQNFRDPPQRLSKVLASAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDIG 672
            SKAARRFYN+N R+  QRLSKVLA+AGVASRRSSEELIF GRVTVNGSVCNTPQTRVD  
Sbjct: 132  SKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPA 191

Query: 673  KDLIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKESKSVFSLFDDYMKSWDKRNPGLP 852
            +D+IYVNGNR+ KKLPPKVYLALNKPKGYICSSG+KESKSV SLFDDY+KSWDK  PG P
Sbjct: 192  RDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQP 251

Query: 853  KPRLFTVGRLDVGTTGLIIVTNDGDFAQRVSHPSSNLSKEYIAVIDGLVHKRHLVIISEG 1032
            KPRLFTVGRLDV TTGLIIVTNDGDFAQ +SHPSS LSKEYIA IDG V K++L+ ISEG
Sbjct: 252  KPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEG 311

Query: 1033 TLIEGIQCTPDFVELLPQSPDASRPRLRIVVHEGRNHEVRELVKNAGLKLHSLKRTRIGG 1212
            T+I+G+ CTPD VELLP+ PD S+ RLRIVVHEGRNHEVRELVK AGL+++SLKR RIGG
Sbjct: 312  TIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGG 371

Query: 1213 YKLPSDLGLGKHVELKPGDVKLLG 1284
            ++LPSDLGLG + ELK  ++K +G
Sbjct: 372  FRLPSDLGLGSYTELKQSELKAIG 395


>emb|CBI31423.3| unnamed protein product [Vitis vinifera]
          Length = 296

 Score =  464 bits (1195), Expect = e-128
 Identities = 222/268 (82%), Positives = 250/268 (93%)
 Frame = +1

Query: 481  EPKYSKAARRFYNQNFRDPPQRLSKVLASAGVASRRSSEELIFEGRVTVNGSVCNTPQTR 660
            EPKYSKAARRFYN+NFRDPPQRLSKVLA+AGVASRR+SEELIFEGRVTVNGSVCNTPQTR
Sbjct: 26   EPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTR 85

Query: 661  VDIGKDLIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKESKSVFSLFDDYMKSWDKRN 840
            VD  +D+IYVNGNR+ KKLPPKVYLALNKPKGYICSSGEKESKSV  LFDDY+KSW+K+N
Sbjct: 86   VDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQN 145

Query: 841  PGLPKPRLFTVGRLDVGTTGLIIVTNDGDFAQRVSHPSSNLSKEYIAVIDGLVHKRHLVI 1020
            PG+PKPR+FTVGRLDV TTGLII+TNDGDFAQ++SHPSS LSKEYIA IDG+V+KRHL+ 
Sbjct: 146  PGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHLIA 205

Query: 1021 ISEGTLIEGIQCTPDFVELLPQSPDASRPRLRIVVHEGRNHEVRELVKNAGLKLHSLKRT 1200
            ISEGT+IEG+ CTPD VELLP  P+ S+PRLR+VVHEGRNHEVRELVK+AGL++HSLKR 
Sbjct: 206  ISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLKRI 265

Query: 1201 RIGGYKLPSDLGLGKHVELKPGDVKLLG 1284
            RIGG++LPSDLG GKHVELK GD+K LG
Sbjct: 266  RIGGFRLPSDLGHGKHVELKQGDLKALG 293


>ref|XP_006411139.1| hypothetical protein EUTSA_v10016747mg [Eutrema salsugineum]
            gi|557112308|gb|ESQ52592.1| hypothetical protein
            EUTSA_v10016747mg [Eutrema salsugineum]
          Length = 403

 Score =  463 bits (1192), Expect = e-128
 Identities = 230/331 (69%), Positives = 264/331 (79%), Gaps = 7/331 (2%)
 Frame = +1

Query: 313  LLIPWIVRGEDGKLKLQSTPPVRFLHAMDXXXXXXXXXXXXXXXXXXXXXXAVLTP---- 480
            L IPWIVRGEDGKLK+QS PP R +HA+                       A  TP    
Sbjct: 71   LFIPWIVRGEDGKLKVQSQPPARLIHALADATTQNPKKKDKSKKKKPQSTSA-STPSSPA 129

Query: 481  ---EPKYSKAARRFYNQNFRDPPQRLSKVLASAGVASRRSSEELIFEGRVTVNGSVCNTP 651
               +PK SKAARRFYN+NF+DPPQRLSKVLA+AGVASRR+SEELIF+G+VTVNGS+C  P
Sbjct: 130  SHSKPKLSKAARRFYNENFKDPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGSLCTAP 189

Query: 652  QTRVDIGKDLIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKESKSVFSLFDDYMKSWD 831
            Q RVD  +D+IYVNGNRI KKLPPKVY ALNKPKGYICSSGEKE KSV SLFDD++ SWD
Sbjct: 190  QIRVDPTRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEVKSVISLFDDFLASWD 249

Query: 832  KRNPGLPKPRLFTVGRLDVGTTGLIIVTNDGDFAQRVSHPSSNLSKEYIAVIDGLVHKRH 1011
            KRNPG PKPRLFTVGRLDV TTGLI+VTNDGDFAQ++SHPSS+L KEYI  + G VHKRH
Sbjct: 250  KRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDVHKRH 309

Query: 1012 LVIISEGTLIEGIQCTPDFVELLPQSPDASRPRLRIVVHEGRNHEVRELVKNAGLKLHSL 1191
            L+ ISEGT++EG+ C PD VEL+P+  D  R RLRIVVHEGRNHEVRE+VKNAGL++HSL
Sbjct: 310  LMTISEGTIVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVREIVKNAGLEVHSL 369

Query: 1192 KRTRIGGYKLPSDLGLGKHVELKPGDVKLLG 1284
            KR RIGG++LPSDLGLGKHVELK  ++K +G
Sbjct: 370  KRVRIGGFRLPSDLGLGKHVELKQSELKAMG 400


>ref|XP_006294188.1| hypothetical protein CARUB_v10023183mg, partial [Capsella rubella]
            gi|482562896|gb|EOA27086.1| hypothetical protein
            CARUB_v10023183mg, partial [Capsella rubella]
          Length = 456

 Score =  460 bits (1183), Expect = e-127
 Identities = 230/338 (68%), Positives = 262/338 (77%), Gaps = 14/338 (4%)
 Frame = +1

Query: 313  LLIPWIVRGEDGKLKLQSTPPVRFLH--AMDXXXXXXXXXXXXXXXXXXXXXXAVLTPE- 483
            L IPWIVRG+DG LKLQS PP R +H  A+D                      +      
Sbjct: 116  LFIPWIVRGDDGTLKLQSQPPARLIHSLAIDATTQNPKKKEKSKKKQTQATSSSATASSS 175

Query: 484  -----------PKYSKAARRFYNQNFRDPPQRLSKVLASAGVASRRSSEELIFEGRVTVN 630
                       PK SKAARRFYN+NF++PPQRLSKVLA+AGVASRR+SEELIF+G+VTVN
Sbjct: 176  ASASSPPPQSVPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTVN 235

Query: 631  GSVCNTPQTRVDIGKDLIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKESKSVFSLFD 810
            G +CNTPQTRVD  +D+IYVNGNRI KKLPPKVY ALNKPKGYICSSGEKE KSV SLFD
Sbjct: 236  GILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEVKSVISLFD 295

Query: 811  DYMKSWDKRNPGLPKPRLFTVGRLDVGTTGLIIVTNDGDFAQRVSHPSSNLSKEYIAVID 990
            +YM SWDKRNPG PKPRLFTVGRLDV TTGLIIVTNDGDFAQ++SHPSS+L KEYI  + 
Sbjct: 296  EYMASWDKRNPGTPKPRLFTVGRLDVATTGLIIVTNDGDFAQQLSHPSSSLPKEYITTVV 355

Query: 991  GLVHKRHLVIISEGTLIEGIQCTPDFVELLPQSPDASRPRLRIVVHEGRNHEVRELVKNA 1170
            G +HKRHL+ ISEGT++EG+ C PD VEL+P+  D  R RLRIVVHEGRNHEVRELVKNA
Sbjct: 356  GDIHKRHLMAISEGTIVEGVHCVPDLVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNA 415

Query: 1171 GLKLHSLKRTRIGGYKLPSDLGLGKHVELKPGDVKLLG 1284
            GL +HSLKR RIGG++LPSDLGLGKH ELK  ++K+LG
Sbjct: 416  GLVVHSLKRVRIGGFRLPSDLGLGKHAELKQSELKVLG 453


>ref|XP_002879786.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297325625|gb|EFH56045.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 412

 Score =  459 bits (1182), Expect = e-126
 Identities = 228/338 (67%), Positives = 264/338 (78%), Gaps = 14/338 (4%)
 Frame = +1

Query: 313  LLIPWIVRGEDGKLKLQSTPPVRFLH--AMDXXXXXXXXXXXXXXXXXXXXXXAVLTP-- 480
            L IPWIVRG+DG LKLQS PP R +H  A+D                      +      
Sbjct: 72   LFIPWIVRGDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKPKKKQPQATSSSASATAS 131

Query: 481  ----------EPKYSKAARRFYNQNFRDPPQRLSKVLASAGVASRRSSEELIFEGRVTVN 630
                      +PK SKAARRFYN+NF++PPQRLSKVLA+AGVASRR+SEELIF+G+VTVN
Sbjct: 132  ASSPASHSEVKPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTVN 191

Query: 631  GSVCNTPQTRVDIGKDLIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKESKSVFSLFD 810
            G +CNTPQTRVD  +D+IYVNGNRI KKLPPKVY ALNKPKGYICSSGEKE KSV SLFD
Sbjct: 192  GILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSVISLFD 251

Query: 811  DYMKSWDKRNPGLPKPRLFTVGRLDVGTTGLIIVTNDGDFAQRVSHPSSNLSKEYIAVID 990
            +Y+ SWDKRNPG PKPRLFTVGRLDV TTGLI+VTNDGDFAQ++SHPSS+L KEYI  + 
Sbjct: 252  EYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVV 311

Query: 991  GLVHKRHLVIISEGTLIEGIQCTPDFVELLPQSPDASRPRLRIVVHEGRNHEVRELVKNA 1170
            G +HKRHL+ ISEGT++EG+ C PD VEL+P+  D  R RLRIVVHEGRNHEVRELVKNA
Sbjct: 312  GDIHKRHLMAISEGTIVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNA 371

Query: 1171 GLKLHSLKRTRIGGYKLPSDLGLGKHVELKPGDVKLLG 1284
            GL++HSLKR RIGG++LPSDLGLGKHVELK  ++K +G
Sbjct: 372  GLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKAMG 409


>ref|XP_004496237.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cicer arietinum]
          Length = 410

 Score =  459 bits (1181), Expect = e-126
 Identities = 234/359 (65%), Positives = 267/359 (74%), Gaps = 4/359 (1%)
 Frame = +1

Query: 223  KPKPNPEDSSKQDQLIGLXXXXXXXXPAVPLLIPWIVRGEDGKLKLQSTPPVRFLHAM-- 396
            KPKPNP+   + +                 L+IPWIVRGEDG  KL S PP  FL AM  
Sbjct: 49   KPKPNPKPEPQTES-----PNQFPDDNEGQLIIPWIVRGEDGNFKLLSEPPPSFLKAMAN 103

Query: 397  --DXXXXXXXXXXXXXXXXXXXXXXAVLTPEPKYSKAARRFYNQNFRDPPQRLSKVLASA 570
                                        T  P+YSKAARRFYN+NF+D   RLSKVLA++
Sbjct: 104  DKTGTKKSDKNQTTKNKKKSENETKVRATAPPQYSKAARRFYNENFKDSGTRLSKVLAAS 163

Query: 571  GVASRRSSEELIFEGRVTVNGSVCNTPQTRVDIGKDLIYVNGNRISKKLPPKVYLALNKP 750
            GVASRRS E+LIFEG+VTVNGSVCNTPQTRVD  KD+IYVNG+R+ K+ P KVYLALNKP
Sbjct: 164  GVASRRSCEDLIFEGKVTVNGSVCNTPQTRVDPAKDVIYVNGSRLPKRQPHKVYLALNKP 223

Query: 751  KGYICSSGEKESKSVFSLFDDYMKSWDKRNPGLPKPRLFTVGRLDVGTTGLIIVTNDGDF 930
            KGYICSSGEKESKSV SLFDD++ SWDK++PG+P PRLFTVGRLDV TTGL+IVTNDGDF
Sbjct: 224  KGYICSSGEKESKSVLSLFDDFLSSWDKKHPGVPMPRLFTVGRLDVATTGLLIVTNDGDF 283

Query: 931  AQRVSHPSSNLSKEYIAVIDGLVHKRHLVIISEGTLIEGIQCTPDFVELLPQSPDASRPR 1110
            AQR+SHPSSN SKEYIA ++GLVHKRHL  ISEGT IEG+ C PD VELLP  PDA R R
Sbjct: 284  AQRLSHPSSNFSKEYIATVNGLVHKRHLTAISEGTTIEGVHCVPDSVELLPSMPDAQRAR 343

Query: 1111 LRIVVHEGRNHEVRELVKNAGLKLHSLKRTRIGGYKLPSDLGLGKHVELKPGDVKLLGG 1287
            LRIVVH+GR HEVRELVKNAGL++HSLKR RIGG++LP DLGLGK++EL P  +K LGG
Sbjct: 344  LRIVVHDGRKHEVRELVKNAGLEIHSLKRVRIGGFRLPPDLGLGKYIELNPTKLKALGG 402


>ref|NP_181447.2| protein SUPPRESSOR OF VARIEGATION 1 [Arabidopsis thaliana]
            gi|21617894|gb|AAM66944.1| unknown [Arabidopsis thaliana]
            gi|26450440|dbj|BAC42334.1| unknown protein [Arabidopsis
            thaliana] gi|330254545|gb|AEC09639.1| pseudouridine
            synthase family protein [Arabidopsis thaliana]
          Length = 410

 Score =  455 bits (1171), Expect = e-125
 Identities = 227/337 (67%), Positives = 262/337 (77%), Gaps = 13/337 (3%)
 Frame = +1

Query: 313  LLIPWIVRGEDGKLKLQSTPPVRFLH--AMDXXXXXXXXXXXXXXXXXXXXXXAVLTP-- 480
            L IPWIVR +DG LKLQS PP R +H  A+D                      +  T   
Sbjct: 71   LFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKSKKKQPQATSSSSATTTA 130

Query: 481  ---------EPKYSKAARRFYNQNFRDPPQRLSKVLASAGVASRRSSEELIFEGRVTVNG 633
                     +PK SKAARRFYN+NF++ PQRLSKVLA+AGVASRR+SEELIF+G+VTVNG
Sbjct: 131  SSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLAAAGVASRRTSEELIFDGKVTVNG 190

Query: 634  SVCNTPQTRVDIGKDLIYVNGNRISKKLPPKVYLALNKPKGYICSSGEKESKSVFSLFDD 813
             +CNTPQTRVD  +D+IYVNGNRI KKLPPKVY ALNKPKGYICSSGEKE KS  SLFD+
Sbjct: 191  ILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSAISLFDE 250

Query: 814  YMKSWDKRNPGLPKPRLFTVGRLDVGTTGLIIVTNDGDFAQRVSHPSSNLSKEYIAVIDG 993
            Y+ SWDKRNPG PKPRLFTVGRLDV TTGLI+VTNDGDFAQ++SHPSS+L KEYI  + G
Sbjct: 251  YLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVG 310

Query: 994  LVHKRHLVIISEGTLIEGIQCTPDFVELLPQSPDASRPRLRIVVHEGRNHEVRELVKNAG 1173
             +HKRHL+ ISEGT++EG+ C PD VEL+P+  D  R RLRIVVHEGRNHEVRELVKNAG
Sbjct: 311  DIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAG 370

Query: 1174 LKLHSLKRTRIGGYKLPSDLGLGKHVELKPGDVKLLG 1284
            L++HSLKR RIGG++LPSDLGLGKHVELK  ++K LG
Sbjct: 371  LEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKALG 407


>gb|AFK43008.1| unknown [Medicago truncatula]
          Length = 408

 Score =  448 bits (1152), Expect = e-123
 Identities = 228/361 (63%), Positives = 266/361 (73%), Gaps = 6/361 (1%)
 Frame = +1

Query: 223  KPKPNPEDSSKQDQLIGLXXXXXXXXPAVPLLIPWIVRGEDGKLKLQSTPPVRFLHAM-- 396
            KPKP P+  ++                  PL+IPWIVRGEDG  KL S PP  FL  M  
Sbjct: 50   KPKPTPQPKTQTPH---------DDDDEGPLMIPWIVRGEDGNFKLLSEPPPSFLKEMAN 100

Query: 397  ---DXXXXXXXXXXXXXXXXXXXXXXAVLTPEPKYSKAARRFYNQNFRDPP-QRLSKVLA 564
                                        +T  PKYSKAARRFYN+N +D    RLSKVLA
Sbjct: 101  AQTGTKKSEKDQITKNKKKGEKETKIRAVTAPPKYSKAARRFYNENIKDDSGTRLSKVLA 160

Query: 565  SAGVASRRSSEELIFEGRVTVNGSVCNTPQTRVDIGKDLIYVNGNRISKKLPPKVYLALN 744
            ++GVASRRS E+LIF+G+VTVNGSVCNTPQT+VD  KD IYVNG+R+ K+ P KVYLALN
Sbjct: 161  ASGVASRRSCEDLIFKGKVTVNGSVCNTPQTKVDPSKDNIYVNGSRLPKRQPHKVYLALN 220

Query: 745  KPKGYICSSGEKESKSVFSLFDDYMKSWDKRNPGLPKPRLFTVGRLDVGTTGLIIVTNDG 924
            KPKGYICSSGEKESKSV SLFDD++ SWDK++PG+P PRLFTVGRLDV TTGL+IVTNDG
Sbjct: 221  KPKGYICSSGEKESKSVISLFDDFLSSWDKKHPGVPPPRLFTVGRLDVATTGLLIVTNDG 280

Query: 925  DFAQRVSHPSSNLSKEYIAVIDGLVHKRHLVIISEGTLIEGIQCTPDFVELLPQSPDASR 1104
            DFAQ++SHPSSN SKEYIA +DGLVHKRHL  ISEGT IEG+ C PD VELLP+ PD  R
Sbjct: 281  DFAQKLSHPSSNFSKEYIATVDGLVHKRHLTAISEGTTIEGVHCVPDSVELLPRMPDTQR 340

Query: 1105 PRLRIVVHEGRNHEVRELVKNAGLKLHSLKRTRIGGYKLPSDLGLGKHVELKPGDVKLLG 1284
             RLRIVVH+GR HEVRELVK+AGL++HSLKR RIGG++LP DLG+GK++EL P ++K LG
Sbjct: 341  SRLRIVVHDGRKHEVRELVKSAGLEIHSLKRVRIGGFRLPPDLGIGKYIELNPTNLKALG 400

Query: 1285 G 1287
            G
Sbjct: 401  G 401