BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00008636
         (2925 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isof...  1155   0.0  
emb|CBI36559.3| unnamed protein product [Vitis vinifera]             1154   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1154   0.0  
ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isof...  1150   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1148   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...  1140   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...  1137   0.0  
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...  1133   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1131   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...  1125   0.0  
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1123   0.0  
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1123   0.0  
sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...  1122   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1115   0.0  
gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus...  1110   0.0  
emb|CBL69150.1| RNA polymerase [Nuphar advena]                       1095   0.0  
emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]     1095   0.0  
ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [A...  1092   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1086   0.0  
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1086   0.0  

>ref|XP_007013877.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
            gi|508784240|gb|EOY31496.1| DNA/RNA polymerases
            superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 1155 bits (2987), Expect = 0.0
 Identities = 550/717 (76%), Positives = 636/717 (88%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRK 180
            RIHNFLE+TK +Q  K    D+ + +SKE+EIL+KRV +LI++++L+EVQKLVK+ ++ K
Sbjct: 265  RIHNFLEKTKNYQRKKTT--DEVQGLSKEKEILKKRVNSLIRRRRLVEVQKLVKN-EEIK 321

Query: 181  SWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRR 360
             WGRDAQAKLGSRL+ELL ETAYVQPP++Q  DSPP++ PAFRH FKTI+ +PG++  +R
Sbjct: 322  PWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMMKR 381

Query: 361  YGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQ 540
            YGV+ECD L+  GLDR+A++M++PYVPML+PPKKWKGY  GG+LFLPSYVMRTHGSR+QQ
Sbjct: 382  YGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQ 441

Query: 541  DAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEK 720
            DA+K V   +MQKVFEALDTLG TKWRVNK++LAVVE++WA GGN+AGLVDR D+PIPEK
Sbjct: 442  DALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEK 501

Query: 721  QHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGR 900
              SED TE Q W+WSV KA K NRERH+QRCD ELKLSVARKM+NEEGFYYPHNLDFRGR
Sbjct: 502  PSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGR 561

Query: 901  AYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFV 1080
            AYPMHPHLNHLSSDLCRGVLEFAEG+PLG++GL WLKIHLANL+AGG+EKLS+DGR+ FV
Sbjct: 562  AYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFV 621

Query: 1081 ENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGS 1260
            +NHL DI DSAE PI G RWWL AEDPFQCLAACINLSE+LKS+SPH+V S+LPIHQDGS
Sbjct: 622  DNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGS 681

Query: 1261 CNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLA 1440
            CNGLQHYAALGR            GEKPADVYSEIA RV NI+KRD +KDPAT P A LA
Sbjct: 682  CNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNASLA 741

Query: 1441 RILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTM 1620
            ++LIDQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG ITDDR+LF+A+CY AKVT+
Sbjct: 742  KLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTL 801

Query: 1621 TALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVL 1800
             ALGE+FQ AR+IMGWLGDCAKVIASENQPV+WTTPLGLPVVQPY KSERHLIRTSLQVL
Sbjct: 802  AALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVL 861

Query: 1801 ALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVD 1980
            ALQREGD V+V++QRTAFPPNFVHSLDGSHMMMTAVACRD+GLHFAGVHDSFWTHA DV+
Sbjct: 862  ALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVE 921

Query: 1981 KMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            KMNQILREKF+ELY+MP+LENL ES QTS+P+L FPPLP+RG+FDL+ + +SPYFFN
Sbjct: 922  KMNQILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 978


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score = 1154 bits (2984), Expect = 0.0
 Identities = 557/717 (77%), Positives = 632/717 (88%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRK 180
            RIH+FLE+TK F+  K V G   E + +E+EILRKRVK+ I+K+K+IEVQKLVK+ ++  
Sbjct: 95   RIHSFLEKTKNFERHKTV-GHSQEGL-REKEILRKRVKSFIRKKKIIEVQKLVKN-EEIT 151

Query: 181  SWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRR 360
             WGRD QAKLGSRL+ELL ETAYVQ PVNQ AD PP++ PAFRHTFKT+T E G++  R+
Sbjct: 152  PWGRDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRK 211

Query: 361  YGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQ 540
            YGV+ECD LV  GLDRTA++MV+PYVPMLIPPKKWKGY  GG+LFLPSYVMRTHGSR+QQ
Sbjct: 212  YGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQ 271

Query: 541  DAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEK 720
            DA+KSVPR Q+QKVFEALDTLG TKWR+N+R+L+VVE++WARGGN+ GLVDRE+VP+PEK
Sbjct: 272  DAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEK 331

Query: 721  QHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGR 900
              +ED TEIQNW+W+  KAKK N+ERH+ RCD E+KLSVARKMK+EEGFYYPHNLDFRGR
Sbjct: 332  PSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGR 391

Query: 901  AYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFV 1080
            AYPMHPHLNHLSSDLCRGVLEFAEG+PLGK+GLRWLKI LANLYAGG+EKLSYDGR+ FV
Sbjct: 392  AYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFV 451

Query: 1081 ENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGS 1260
            +NHL D+ DSA+ P+ G RWWL AEDPFQCLAACINLSEAL+S+SPHTV SHLPIHQDGS
Sbjct: 452  DNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGS 511

Query: 1261 CNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLA 1440
            CNGLQHYAALGR            GEKPADVYSEIAARV  I+KRD  KDPAT P ALLA
Sbjct: 512  CNGLQHYAALGRNSLEASAVNLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLA 571

Query: 1441 RILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTM 1620
            ++LI QVDRKLVKQTVMTSVYGVTY+GAREQIKRRL EKG ITD+RLLF+A+CYAAKVT+
Sbjct: 572  KVLIGQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTL 631

Query: 1621 TALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVL 1800
             ALGE+FQ AR IM WLG+CAKVIASENQPV+WTTPLGLPV+QPY KSERHLIRTSLQVL
Sbjct: 632  AALGEIFQAARDIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVL 691

Query: 1801 ALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVD 1980
            ALQREG  V +++QRTAFPPNFVHSLDGSHMMMTAVACRD+GL FAGVHDSFWTHA DVD
Sbjct: 692  ALQREGSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVD 751

Query: 1981 KMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            KMNQILREKF+ELY+MPILENLLESFQTS PTL FPPLPDRG+FDL+ + ESPYFFN
Sbjct: 752  KMNQILREKFVELYSMPILENLLESFQTSHPTLTFPPLPDRGNFDLREVLESPYFFN 808


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1154 bits (2984), Expect = 0.0
 Identities = 557/717 (77%), Positives = 632/717 (88%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRK 180
            RIH+FLE+TK F+  K V G   E + +E+EILRKRVK+ I+K+K+IEVQKLVK+ ++  
Sbjct: 266  RIHSFLEKTKNFERHKTV-GHSQEGL-REKEILRKRVKSFIRKKKIIEVQKLVKN-EEIT 322

Query: 181  SWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRR 360
             WGRD QAKLGSRL+ELL ETAYVQ PVNQ AD PP++ PAFRHTFKT+T E G++  R+
Sbjct: 323  PWGRDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRK 382

Query: 361  YGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQ 540
            YGV+ECD LV  GLDRTA++MV+PYVPMLIPPKKWKGY  GG+LFLPSYVMRTHGSR+QQ
Sbjct: 383  YGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQ 442

Query: 541  DAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEK 720
            DA+KSVPR Q+QKVFEALDTLG TKWR+N+R+L+VVE++WARGGN+ GLVDRE+VP+PEK
Sbjct: 443  DAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEK 502

Query: 721  QHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGR 900
              +ED TEIQNW+W+  KAKK N+ERH+ RCD E+KLSVARKMK+EEGFYYPHNLDFRGR
Sbjct: 503  PSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGR 562

Query: 901  AYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFV 1080
            AYPMHPHLNHLSSDLCRGVLEFAEG+PLGK+GLRWLKI LANLYAGG+EKLSYDGR+ FV
Sbjct: 563  AYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFV 622

Query: 1081 ENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGS 1260
            +NHL D+ DSA+ P+ G RWWL AEDPFQCLAACINLSEAL+S+SPHTV SHLPIHQDGS
Sbjct: 623  DNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGS 682

Query: 1261 CNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLA 1440
            CNGLQHYAALGR            GEKPADVYSEIAARV  I+KRD  KDPAT P ALLA
Sbjct: 683  CNGLQHYAALGRNSLEASAVNLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLA 742

Query: 1441 RILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTM 1620
            ++LI QVDRKLVKQTVMTSVYGVTY+GAREQIKRRL EKG ITD+RLLF+A+CYAAKVT+
Sbjct: 743  KVLIGQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTL 802

Query: 1621 TALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVL 1800
             ALGE+FQ AR IM WLG+CAKVIASENQPV+WTTPLGLPV+QPY KSERHLIRTSLQVL
Sbjct: 803  AALGEIFQAARDIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVL 862

Query: 1801 ALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVD 1980
            ALQREG  V +++QRTAFPPNFVHSLDGSHMMMTAVACRD+GL FAGVHDSFWTHA DVD
Sbjct: 863  ALQREGSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVD 922

Query: 1981 KMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            KMNQILREKF+ELY+MPILENLLESFQTS PTL FPPLPDRG+FDL+ + ESPYFFN
Sbjct: 923  KMNQILREKFVELYSMPILENLLESFQTSHPTLTFPPLPDRGNFDLREVLESPYFFN 979


>ref|XP_007013878.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
            gi|508784241|gb|EOY31497.1| DNA/RNA polymerases
            superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score = 1150 bits (2976), Expect = 0.0
 Identities = 550/718 (76%), Positives = 636/718 (88%), Gaps = 1/718 (0%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRK 180
            RIHNFLE+TK +Q  K    D+ + +SKE+EIL+KRV +LI++++L+EVQKLVK+ ++ K
Sbjct: 143  RIHNFLEKTKNYQRKKTT--DEVQGLSKEKEILKKRVNSLIRRRRLVEVQKLVKN-EEIK 199

Query: 181  SWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRR 360
             WGRDAQAKLGSRL+ELL ETAYVQPP++Q  DSPP++ PAFRH FKTI+ +PG++  +R
Sbjct: 200  PWGRDAQAKLGSRLLELLTETAYVQPPIDQSGDSPPDVQPAFRHKFKTISKDPGKKMMKR 259

Query: 361  YGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQ 540
            YGV+ECD L+  GLDR+A++M++PYVPML+PPKKWKGY  GG+LFLPSYVMRTHGSR+QQ
Sbjct: 260  YGVIECDPLILSGLDRSAKHMLIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQ 319

Query: 541  DAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEK 720
            DA+K V   +MQKVFEALDTLG TKWRVNK++LAVVE++WA GGN+AGLVDR D+PIPEK
Sbjct: 320  DALKGVHVKKMQKVFEALDTLGSTKWRVNKKVLAVVESIWASGGNIAGLVDRNDIPIPEK 379

Query: 721  QHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGR 900
              SED TE Q W+WSV KA K NRERH+QRCD ELKLSVARKM+NEEGFYYPHNLDFRGR
Sbjct: 380  PSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGR 439

Query: 901  AYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFV 1080
            AYPMHPHLNHLSSDLCRGVLEFAEG+PLG++GL WLKIHLANL+AGG+EKLS+DGR+ FV
Sbjct: 440  AYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVEKLSHDGRLAFV 499

Query: 1081 ENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGS 1260
            +NHL DI DSAE PI G RWWL AEDPFQCLAACINLSE+LKS+SPH+V S+LPIHQDGS
Sbjct: 500  DNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSVLSYLPIHQDGS 559

Query: 1261 CNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLA 1440
            CNGLQHYAALGR            GEKPADVYSEIA RV NI+KRD +KDPAT P A LA
Sbjct: 560  CNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDKDPATNPNASLA 619

Query: 1441 RILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTM 1620
            ++LIDQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG ITDDR+LF+A+CY AKVT+
Sbjct: 620  KLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLFAAACYTAKVTL 679

Query: 1621 TALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVL 1800
             ALGE+FQ AR+IMGWLGDCAKVIASENQPV+WTTPLGLPVVQPY KSERHLIRTSLQVL
Sbjct: 680  AALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSERHLIRTSLQVL 739

Query: 1801 ALQREGD-FVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDV 1977
            ALQREGD  V+V++QRTAFPPNFVHSLDGSHMMMTAVACRD+GLHFAGVHDSFWTHA DV
Sbjct: 740  ALQREGDSVVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDV 799

Query: 1978 DKMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            +KMNQILREKF+ELY+MP+LENL ES QTS+P+L FPPLP+RG+FDL+ + +SPYFFN
Sbjct: 800  EKMNQILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGNFDLREVLKSPYFFN 857


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score = 1148 bits (2969), Expect = 0.0
 Identities = 550/717 (76%), Positives = 633/717 (88%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRK 180
            RIH+FLE+TK ++  K +  D  E +SKE+E+LRKRV +LIK ++++E QKL+K+ ++ K
Sbjct: 295  RIHSFLEKTKNYKR-KKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN-EETK 352

Query: 181  SWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRR 360
             WGRD QAKLGSRLVELLIETAYVQ PVN    SPP++ PAFRH FKTI   PG++  +R
Sbjct: 353  PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 412

Query: 361  YGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQ 540
            YGVVECD LV  GLDR+A++M++PYVPML+PPKKWKGY  GG+LFLPSYVMRTHGSR+QQ
Sbjct: 413  YGVVECDPLVLAGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQ 472

Query: 541  DAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEK 720
            +A+KSV    M+KVFEALDTLG TKWRVNK++L+V+E++W  GGN+AGLVDR DVPIPEK
Sbjct: 473  EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVPIPEK 532

Query: 721  QHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGR 900
              SED TE+Q W+WSV KAKK N+ERH+QRCD ELKLSVAR+MK+EEGFYYPHNLDFRGR
Sbjct: 533  PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 592

Query: 901  AYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFV 1080
            AYPMHPHLNHLSSD+CRGVLEFAEG+PLGK+GLRWLKIHLANL++GG+EKLS+DGR+ FV
Sbjct: 593  AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 652

Query: 1081 ENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGS 1260
            ENHL++I DSAE PI G RWWL AEDPFQCLAACINLSEALKS+SPH+V SHLPIHQDGS
Sbjct: 653  ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 712

Query: 1261 CNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLA 1440
            CNGLQHYAALGR            GEKPADVYSEIA RV  I+KRD  KDP+ +P ALLA
Sbjct: 713  CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 772

Query: 1441 RILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTM 1620
            +ILIDQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG ITDDR LF+A+CYAAKVT+
Sbjct: 773  KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTL 832

Query: 1621 TALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVL 1800
            TALGE+F+ ARSIMGWLGDCAKVIASENQPV+WTTPLGLPVVQPY K+ERHLIRTSLQVL
Sbjct: 833  TALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVL 892

Query: 1801 ALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVD 1980
            ALQREG  V++++QRTAFPPNFVHSLDGSHMMMTAVACRD+GLHFAGVHDSFWTHA DVD
Sbjct: 893  ALQREGKSVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVD 952

Query: 1981 KMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            +MNQILR+KF+ELYNMPILENLLESFQTS+PTL FPPLP+RG+FDL+ + ESPYFFN
Sbjct: 953  EMNQILRKKFVELYNMPILENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 1009


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score = 1140 bits (2950), Expect = 0.0
 Identities = 545/717 (76%), Positives = 619/717 (86%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRK 180
            RIHNFLE+TK +Q  K +  +  E + KE+E+LRKRV +LI++++L+EVQ LVK  D+ K
Sbjct: 168  RIHNFLEKTKNYQRKKTMH-EVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQ-DETK 225

Query: 181  SWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRR 360
             W R  QAKLGSRL+ELL ETAYVQPPVNQ  D PP++ PAFRH FKT+T  PG++  ++
Sbjct: 226  PWSRGTQAKLGSRLIELLTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKK 285

Query: 361  YGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQ 540
            YGV+ECD L+  GLD TA++M++PY PML+PPKKWKGY  GGHLFLPSYVMRTHGSRQQQ
Sbjct: 286  YGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQ 345

Query: 541  DAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEK 720
             A++SVP  QMQKVFEALDTLG TKWRVN+RLL VVE +W  GGN+AGLVDRED+PIPEK
Sbjct: 346  VAVRSVPGKQMQKVFEALDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEK 405

Query: 721  QHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGR 900
              S+D TEIQ W+WSV KAKK N+ERH+QRCD ELKLSVARK+K+EEGFYYPHNLDFRGR
Sbjct: 406  PSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGR 465

Query: 901  AYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFV 1080
            AYPMHPHL HLSSDLCRGVLEF EG+PLGK+GLRWLKIHLANLY+GG+EKLS+DGR+ FV
Sbjct: 466  AYPMHPHLTHLSSDLCRGVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFV 525

Query: 1081 ENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGS 1260
            ENHL +I DSA+ P+ GKRWWL AEDPFQCLAACINLSEAL S SPHTV SHLPIHQDGS
Sbjct: 526  ENHLSEIFDSAKNPVNGKRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGS 585

Query: 1261 CNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLA 1440
            CNGLQHYAALGR             EKP+DVYSEIA RV  II+RD  KDPAT P ALLA
Sbjct: 586  CNGLQHYAALGRDTLEAAAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLA 645

Query: 1441 RILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTM 1620
            +IL+DQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG ITDDRLLFSA+CY AKVT+
Sbjct: 646  KILVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTL 705

Query: 1621 TALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVL 1800
            TALGE+FQ AR IM WLGDCAK+IASE+QPV+WTTPLGLPVVQPY K+ERHLI+TSLQ+L
Sbjct: 706  TALGELFQAARDIMSWLGDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQIL 765

Query: 1801 ALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVD 1980
            ALQREG  V V++QRTAFPPNFVHSLDGSHMMMTAVACRD+GL FAGVHDSFWTHA DVD
Sbjct: 766  ALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVD 825

Query: 1981 KMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
             MN+ILREKF+ELYNMPILENLLE FQTS+PTL+FPPLP+RG+FDL+ +  SPYFFN
Sbjct: 826  LMNRILREKFVELYNMPILENLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN 882


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score = 1137 bits (2942), Expect = 0.0
 Identities = 545/717 (76%), Positives = 632/717 (88%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRK 180
            RIH+FLE+TK ++  K +  D  E +SKE+E+LRKRV +LIK ++++E QKL+K+ ++ K
Sbjct: 298  RIHSFLEKTKNYKR-KKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN-EETK 355

Query: 181  SWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRR 360
             WGRD QAKLGSRLVELLIETAYVQ PVN    SPP++ PAFRH FKTI   PG++  +R
Sbjct: 356  PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415

Query: 361  YGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQ 540
            YGVVECD LV +GLDR+A++M++PYVPML+PPKKWKGY  GG+LFLPSYVMRTHGSR+QQ
Sbjct: 416  YGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQ 475

Query: 541  DAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEK 720
            +A+KSV    M+KVFEALDTLG TKWRVNK++L+V+E++W  GGN+AGLVDR DV IPEK
Sbjct: 476  EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEK 535

Query: 721  QHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGR 900
              SED TE+Q W+WSV KAKK N+ERH+QRCD ELKLSVAR+MK+EEGFYYPHNLDFRGR
Sbjct: 536  PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595

Query: 901  AYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFV 1080
            AYPMHPHLNHLSSD+CRGVLEFAEG+PLGK+GLRWLKIHLANL++GG+EKLS+DGR+ FV
Sbjct: 596  AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655

Query: 1081 ENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGS 1260
            ENHL++I DSAE PI G RWWL AEDPFQCLAACINL+EALKS+SPH+V SHLPIHQDGS
Sbjct: 656  ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLAEALKSSSPHSVISHLPIHQDGS 715

Query: 1261 CNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLA 1440
            CNGLQHYAALGR            GEKPADVYSEIA RV  I+KRD  KD + +P ALLA
Sbjct: 716  CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDHSKHPQALLA 775

Query: 1441 RILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTM 1620
            +ILIDQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG ITDDR LF+A+CYAAKVT+
Sbjct: 776  KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTL 835

Query: 1621 TALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVL 1800
            TALGE+F+ ARSIMGWLGDCAKVIASENQPV+WTTPLGLPVVQPY K+ERHLIRTSLQVL
Sbjct: 836  TALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVL 895

Query: 1801 ALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVD 1980
            ALQREG+ V++++QRTAFPPNFVHSLDGSHMMMTAVACRD+GLHFAGVHDSFWTHA DVD
Sbjct: 896  ALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVD 955

Query: 1981 KMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            +MNQILR+KF+ELYNMP+LENLLESFQTS+PTL FP LP+RG+FDL+ + ESPYFFN
Sbjct: 956  EMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPSLPERGNFDLEEVLESPYFFN 1012


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
            gi|462398756|gb|EMJ04424.1| hypothetical protein
            PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 1133 bits (2931), Expect = 0.0
 Identities = 542/717 (75%), Positives = 622/717 (86%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRK 180
            RIH+FLE+TK  Q  K    D+ + +SKE+EILRKRV  LI++++L EVQKL+   ++ K
Sbjct: 262  RIHSFLEKTKNLQKKKTGVADE-DGLSKEKEILRKRVNGLIRRKRLNEVQKLLIK-EEMK 319

Query: 181  SWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRR 360
             WGRD QAKLGSRL+ELL ETAYVQPP++QLADSPP++ PAFRH FK +   PG++  + 
Sbjct: 320  PWGRDKQAKLGSRLIELLTETAYVQPPLSQLADSPPDVRPAFRHRFKAVAKSPGQKIVKN 379

Query: 361  YGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQ 540
            YGV+ECD LV  GLD+TA++M++PYVPML+PPK+WKGY  GGHLFLPSYVMRTHGSR+Q 
Sbjct: 380  YGVIECDPLVLTGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQV 439

Query: 541  DAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEK 720
            DA++++ R QMQKVFEALD LG TKWRVNK++L+VVE++WARGGN+AGLV+REDVP+P+K
Sbjct: 440  DAMRNISRNQMQKVFEALDMLGSTKWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDK 499

Query: 721  QHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGR 900
              SED  EIQ W+WSV KAKK N+ERH+QRCD ELKLSVARKMK+EEGFYYPHNLDFRGR
Sbjct: 500  SPSEDLKEIQEWKWSVRKAKKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGR 559

Query: 901  AYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFV 1080
            AYPMHPHLNHLSSDLCRGVLEFAEG+PLGK+GLRWLKIHLANLYAGG+EKLSY+GR+ FV
Sbjct: 560  AYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFV 619

Query: 1081 ENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGS 1260
            +NH+ DI DSA  P+ G RWWL AEDP QCLAACINLSEAL S SPHTV SHLPIHQDGS
Sbjct: 620  DNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGS 679

Query: 1261 CNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLA 1440
            CNGLQHYAALGR            G+KPADVYSEIAARV  I+KRD  KDP T P ALLA
Sbjct: 680  CNGLQHYAALGRDSLEAAAVNLVDGDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLA 739

Query: 1441 RILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTM 1620
            RIL++Q+DRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG ITDDRLLF+A+CYAAKVT+
Sbjct: 740  RILVNQIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTL 799

Query: 1621 TALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVL 1800
             ALGE+FQ AR IM WLGDCAKVIASENQPV+WTTPLGLPVVQPY KSERHLIRTSLQVL
Sbjct: 800  AALGEIFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVL 859

Query: 1801 ALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVD 1980
            ALQRE + VD+++QRTAFPPNFVHSLDGSHMMMTA+ACRD+GL FAGVHDSFWTH  DVD
Sbjct: 860  ALQRESNSVDIRKQRTAFPPNFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVD 919

Query: 1981 KMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            +MN+ILREKF+ELY+MPILE+LLESFQ S+P L FPPLP+RGDFDL  + ESPYFFN
Sbjct: 920  QMNEILREKFVELYSMPILESLLESFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score = 1131 bits (2926), Expect = 0.0
 Identities = 537/717 (74%), Positives = 620/717 (86%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRK 180
            RIH+FLE++K  Q  K    D+ + +SKE+EILRKRV  LI++++L+EVQKL+K  +D K
Sbjct: 259  RIHSFLEKSKSLQRKKTSVADE-DGLSKEKEILRKRVNGLIRRKRLVEVQKLLKK-EDMK 316

Query: 181  SWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRR 360
             WGRD QAKLGSRL+ELL ETA+VQPP++QLAD PP++ PAFRH  K     PG++  + 
Sbjct: 317  PWGRDTQAKLGSRLIELLTETAHVQPPLDQLADGPPDVRPAFRHRLKAAAKSPGQKLVKN 376

Query: 361  YGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQ 540
            YGV+ECD LV  GLD+TA++M++PYVPML+PPK+WKGY  GGHLFLPSYVMRTHGSR+Q 
Sbjct: 377  YGVIECDPLVLAGLDKTAKHMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQV 436

Query: 541  DAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEK 720
            D ++++   QMQKVFEALD LG TKWR+NK++L VVE++WARGGN+AGLVDREDVP+PEK
Sbjct: 437  DTMRNISGRQMQKVFEALDMLGSTKWRINKKVLNVVESIWARGGNIAGLVDREDVPVPEK 496

Query: 721  QHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGR 900
              SEDPTEIQ WRWS  KAKK N+ERH+QRCD ELKLSVAR+MK+E+GFYYPHNLDFRGR
Sbjct: 497  PPSEDPTEIQEWRWSARKAKKLNQERHSQRCDTELKLSVARRMKDEDGFYYPHNLDFRGR 556

Query: 901  AYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFV 1080
            AYPMHPHLNHLSSDLCRGVLEFAEG+PLGK+GLRWLKIHLANLY+GG+EKLSYDGRI+FV
Sbjct: 557  AYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYSGGVEKLSYDGRISFV 616

Query: 1081 ENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGS 1260
            +NH+ DI DSA  P+ G RWWL AEDP QCLAACINLSEAL S SPHTV SHLPIHQDGS
Sbjct: 617  DNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGS 676

Query: 1261 CNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLA 1440
            CNGLQHYAALGR            GEKPADVYSEIA RV +I+KRD  KDP T P ALLA
Sbjct: 677  CNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPTTNPNALLA 736

Query: 1441 RILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTM 1620
            ++L++Q+DRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG ITDDRLLF+A+CYAAKVT+
Sbjct: 737  KVLVNQIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTL 796

Query: 1621 TALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVL 1800
             ALGE+FQ AR IM WLGDCAKVIASENQPV+WTTPLGLPVVQPY KSERHLIRTSLQVL
Sbjct: 797  AALGEIFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVL 856

Query: 1801 ALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVD 1980
            ALQRE + VDV++QRTAFPPNFVHSLDGSHMMMTA+ACRD+G+ FAGVHDSFWTHA DVD
Sbjct: 857  ALQRESNLVDVRKQRTAFPPNFVHSLDGSHMMMTALACRDAGIRFAGVHDSFWTHACDVD 916

Query: 1981 KMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            +MNQILRE F+ELY+ PILENLLESFQ ++P L FPPLP+RGDFDL+ + +SPYFFN
Sbjct: 917  QMNQILRENFVELYSKPILENLLESFQAAYPELTFPPLPERGDFDLQEVLKSPYFFN 973


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score = 1125 bits (2911), Expect = 0.0
 Identities = 540/717 (75%), Positives = 616/717 (85%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRK 180
            RIHNFLE+TK  Q  K +  D  E + KE+E+LRKRV +LI++++L+EVQ LV   D+ K
Sbjct: 268  RIHNFLEKTKNHQRKKTMH-DVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQ-DETK 325

Query: 181  SWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRR 360
             W RD QAKLGSRL+ELL ETAYVQPPV+Q    PP++ PAFRH FK++T  PG++  ++
Sbjct: 326  PWNRDKQAKLGSRLIELLTETAYVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKK 385

Query: 361  YGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQ 540
            YGV+ECD L+  GLD TA++M++PY PML+PPKKW+GY  GGHLFLPSY+MRTHGSRQQQ
Sbjct: 386  YGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQ 445

Query: 541  DAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEK 720
            DA++SVP  QMQKVFEALDTLG TKWRVN ++L VVE +WA GGN AGLV+R D+PIPEK
Sbjct: 446  DAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIPEK 505

Query: 721  QHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGR 900
              S+D TEIQ W+WSV KAKK N+ERH+QRCD ELKLSVARK+K+EEGFYYPHNLDFRGR
Sbjct: 506  LSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGR 565

Query: 901  AYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFV 1080
            AYPMHPHL HLSSDLCRGVLEFAEG+PLGK+GL WLKIHLANLY+GG+EKLS+DGR+ FV
Sbjct: 566  AYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFV 625

Query: 1081 ENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGS 1260
            ENHL +I DSAE P+ GKRWWL AEDPFQCLAACINLSEALKS SPHTV SHLPIHQDGS
Sbjct: 626  ENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACINLSEALKSASPHTVISHLPIHQDGS 685

Query: 1261 CNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLA 1440
            CNGLQHYAALGR             EKP+DVYSEIA RV  II+RD  KDPAT P ALLA
Sbjct: 686  CNGLQHYAALGRDSQEAAAVNLVAAEKPSDVYSEIATRVHEIIRRDSNKDPATNPHALLA 745

Query: 1441 RILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTM 1620
            ++LID+VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG ITDDR+LFSA+CYAAKVT+
Sbjct: 746  KVLIDEVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYAAKVTL 805

Query: 1621 TALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVL 1800
            TALGE+FQ AR IMGWLGDCAKVIASE+QPV+WTTPLGLPVVQPY K++RHLIRTSLQVL
Sbjct: 806  TALGELFQAARDIMGWLGDCAKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVL 865

Query: 1801 ALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVD 1980
            ALQREG  V V++QRTAFPPNFVHSLDGSHMMMTAVACRD+ L FAGVHDSFWTHA D D
Sbjct: 866  ALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDAD 925

Query: 1981 KMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
             MN+ILREKF+ELYNMPILENLLE FQTS+PTL+FP LP+RG+FDL+ +  SPYFFN
Sbjct: 926  LMNRILREKFVELYNMPILENLLEDFQTSYPTLKFPSLPERGNFDLQEVLRSPYFFN 982


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score = 1124 bits (2906), Expect = 0.0
 Identities = 541/718 (75%), Positives = 627/718 (87%), Gaps = 1/718 (0%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDK-HEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDR 177
            RIHNF+E+TKK Q  K++ G +  ED+S+E  ILRKRVK+LIK+ +++EV+KL++S ++ 
Sbjct: 302  RIHNFMEKTKKHQ--KHMSGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQS-EEP 358

Query: 178  KSWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGR 357
            +SWGRD QAKLG RL+ELL ETAYVQPPV+Q AD+PP+I PAFRH F+  T +PG+   +
Sbjct: 359  ESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVK 418

Query: 358  RYGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQ 537
            +YGV+ECD LV  G+DRT + M++PYVPML+PPKKW+GY  GG+LFLPSY+MRTHGSR+Q
Sbjct: 419  KYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQ 478

Query: 538  QDAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPE 717
            QDA++SVP  QMQ+V+EALDTLG TKWRVNKR+L+VVE++WA GGN+AGLVDR+DVPIPE
Sbjct: 479  QDAVRSVPAKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPE 538

Query: 718  KQHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRG 897
              HS+D  E++ W+W V KAKK N+E H+QRCD ELKLSVARK+K+EEGFYYPHNLDFRG
Sbjct: 539  L-HSDDIMELKRWKWRVRKAKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRG 597

Query: 898  RAYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITF 1077
            RAYPMHPHLNHLSSDLCRG+LEFAEG+PLGK+GLRWLK+HLA+LYAGGIEKL YD RI F
Sbjct: 598  RAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAF 657

Query: 1078 VENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDG 1257
            VENH+ DILDSA  P+ G RWWLNAEDP QCLAACINLSEALKS SPHTV SHLPIHQDG
Sbjct: 658  VENHIDDILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEALKSPSPHTVISHLPIHQDG 717

Query: 1258 SCNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALL 1437
            SCNGLQHYAALGR            GEKPADVY+EIA RV +II+ D  KDPAT P ALL
Sbjct: 718  SCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALL 777

Query: 1438 ARILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVT 1617
            A++LIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG I DDRLLF+ASCYAAKVT
Sbjct: 778  AKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVT 837

Query: 1618 MTALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQV 1797
            + ALGE+FQ AR  M WLGDCAKVIASENQPV+WTTPLGLPVVQPY K++RH+IRTSLQV
Sbjct: 838  LAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQV 897

Query: 1798 LALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDV 1977
            LALQREGD V+V++QRTAFPPNFVHSLDGSHMMMTAVACRD+GLHFAGVHDSFWTHA DV
Sbjct: 898  LALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDV 957

Query: 1978 DKMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            D+MN+ILREKF+ELY+MPILE+LLESFQ S+P L FPPLP RGDFDL+ + ESPYFFN
Sbjct: 958  DQMNRILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLQEVLESPYFFN 1015


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            lycopersicum]
          Length = 1007

 Score = 1123 bits (2904), Expect = 0.0
 Identities = 540/718 (75%), Positives = 627/718 (87%), Gaps = 1/718 (0%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDK-HEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDR 177
            RIHNF+E+TKK Q  K++ G +  ED+S+E  ILRKRVK+LIK+ +++EV+KL++S ++ 
Sbjct: 294  RIHNFMEKTKKHQ--KHMTGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQS-EEP 350

Query: 178  KSWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGR 357
            +SWGRD QAKLG RL+ELL ETAYVQPPV+Q AD+PP+I PAFRH F+  T +PG+   +
Sbjct: 351  ESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVK 410

Query: 358  RYGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQ 537
            +YGV+ECD LV  G+DRT + M++PYVPML+PPKKW+GY  GG+LFLPSY+MRTHGSR+Q
Sbjct: 411  KYGVIECDPLVVVGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQ 470

Query: 538  QDAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPE 717
            QDA++SVP  QMQ+V+EALDTLG TKWRVNKR+L+VVET+WA GGN+AGLVDR+DVPIPE
Sbjct: 471  QDAVRSVPAKQMQQVYEALDTLGSTKWRVNKRILSVVETIWAGGGNIAGLVDRKDVPIPE 530

Query: 718  KQHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRG 897
              HS+D  E++ W+W V KAKK N+E H+QRCD ELKLSVARK+++EEGFYYPHNLDFRG
Sbjct: 531  L-HSDDIMELKRWKWRVRKAKKINQELHSQRCDTELKLSVARKLRDEEGFYYPHNLDFRG 589

Query: 898  RAYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITF 1077
            RAYPMHPHLNHLSSDLCRG+LEFAEG+PLGK+GLRWLK+HLA+LYAGGIEKL YD RI F
Sbjct: 590  RAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAF 649

Query: 1078 VENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDG 1257
            VENH+ DILDSA  P+ G RWWLNAEDP QCLAACINLSEA+KS SPHTV SHLPIHQDG
Sbjct: 650  VENHIDDILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEAVKSLSPHTVISHLPIHQDG 709

Query: 1258 SCNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALL 1437
            SCNGLQHYAALGR            GEKPADVY+EIA RV +II+ D  KDPAT P ALL
Sbjct: 710  SCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALL 769

Query: 1438 ARILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVT 1617
            A++LIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG I DDRLLF+ASCYAAKVT
Sbjct: 770  AKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVT 829

Query: 1618 MTALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQV 1797
            + ALGE+FQ AR  M WLGDCAKVIASENQPV+WTTPLGLPVVQPY K++RH+IRTSLQV
Sbjct: 830  LAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQV 889

Query: 1798 LALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDV 1977
            LALQREGD V+V++QRTAFPPNFVHSLDGSHMMMTAVACRD+GLHFAGVHDSFWTHA DV
Sbjct: 890  LALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDV 949

Query: 1978 DKMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            D+MN+ILREKF+ELY+MPILE+LLESFQ S+P L FPPLP RGDFDL+ + ESPYFFN
Sbjct: 950  DQMNRILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREVLESPYFFN 1007


>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score = 1122 bits (2902), Expect = 0.0
 Identities = 541/718 (75%), Positives = 626/718 (87%), Gaps = 1/718 (0%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEG-DKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDR 177
            RIHNFLE+TKK Q  K++ G    ED+S+E  ILRKRVK+LIK+ +++EV+KL+KS ++ 
Sbjct: 264  RIHNFLEKTKKLQ--KHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKS-EEP 320

Query: 178  KSWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGR 357
            +SWGRD QAKLG RL+ELL ETAYVQPPV+Q AD+PP+I PAFRH F+  T +PG+   +
Sbjct: 321  ESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVK 380

Query: 358  RYGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQ 537
            +YGV+ECD LV  G+DRT + M++PYVPML+PPKKW+GY  GG+LFLPSY+MRTHGSR+Q
Sbjct: 381  KYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQ 440

Query: 538  QDAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPE 717
            QDA++SVP  QMQ+V+EALDTLG TKWRVNKR+L+VVE++WA GGN+AGLVDR+DVPIPE
Sbjct: 441  QDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPE 500

Query: 718  KQHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRG 897
              HS+D  E++ W+W V K+KK N+E H+QRCD ELKLSVARK+K+EEGFYYPHNLDFRG
Sbjct: 501  L-HSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRG 559

Query: 898  RAYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITF 1077
            RAYPMHPHLNHLSSDLCRG+LEFAEG+PLGK+GLRWLKIHLA+LYAGGIEKL YD R+ F
Sbjct: 560  RAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAF 619

Query: 1078 VENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDG 1257
            VENH+ DILDSA  P+ G RWWLNAEDPFQCLAACINLSEALKS+SPHTV SHLPIHQDG
Sbjct: 620  VENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDG 679

Query: 1258 SCNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALL 1437
            SCNGLQHYAALGR            G+KPADVY+EIA RV +II+ D  KDPAT P ALL
Sbjct: 680  SCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALL 739

Query: 1438 ARILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVT 1617
            A++LIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG I DDRLLF+ASCYAAKVT
Sbjct: 740  AKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVT 799

Query: 1618 MTALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQV 1797
            + ALGE+FQ AR  M WLGDCAKVIASENQPV+WTTPLGLPVVQPY K++RH+IRTSLQV
Sbjct: 800  LAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQV 859

Query: 1798 LALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDV 1977
            LALQREGD V+V++QRTAFPPNFVHSLDGSHMMMTAVACRD+GL FAGVHDSFWTHA DV
Sbjct: 860  LALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDV 919

Query: 1978 DKMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            D+MN+ILREKF+ELY+MPILE+LLESFQ S+P L FPPLP RGDFDL  + ESPYFFN
Sbjct: 920  DQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score = 1115 bits (2883), Expect = 0.0
 Identities = 534/718 (74%), Positives = 622/718 (86%), Gaps = 1/718 (0%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEG-DKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDR 177
            RIHNFLE+TKK Q  K++ G    ED+SKE  ILRKRVK+LIK+ +++EV+KL+KS ++ 
Sbjct: 263  RIHNFLEKTKKLQ--KHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKS-EEP 319

Query: 178  KSWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGR 357
            +SWGRD QAKLG RL+ELL ETAYVQ PV+Q AD+PP+I PAFRH FK  T +PG+   +
Sbjct: 320  ESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVK 379

Query: 358  RYGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQ 537
            +YGV+ECD LV  G+DRT + M++PYVPML+PPKKW+GY  GG+LFLPSY+MRTHGSR+Q
Sbjct: 380  KYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQ 439

Query: 538  QDAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPE 717
            QDA++ VP  QMQ+V+EALDTLG TKWRVNKR+L VVE++WA GGN+AGLVDR+DVPIPE
Sbjct: 440  QDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPE 499

Query: 718  KQHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRG 897
              +S+D  E++ W+W V K+KK N+E H+QRCD ELKLSVARK+K+EEGFYYPHNLDFRG
Sbjct: 500  LSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRG 559

Query: 898  RAYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITF 1077
            RAYPMHPHLNHLSSDLCRG+LEFAEG+PLGK+GLRWLKIHLA+LYAGG+EKL YD R+ F
Sbjct: 560  RAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAF 619

Query: 1078 VENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDG 1257
            VENH+ DILDSA  P+ G RWWLNAEDPFQCLAACINLSEALKS+SPHTV SHLPIHQDG
Sbjct: 620  VENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDG 679

Query: 1258 SCNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALL 1437
            SCNGLQHYAALGR            GEKPADVY+EIA RV +II+ D  KDPA  P ALL
Sbjct: 680  SCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALL 739

Query: 1438 ARILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVT 1617
            A++LIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG I DDRLLF+ASCYAAKVT
Sbjct: 740  AKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVT 799

Query: 1618 MTALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQV 1797
            + ALGE+FQ AR  M WLGDCAKVIA ENQPV+WTTPLGLPVVQPY K++RH+IRTSLQ+
Sbjct: 800  LAALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQI 859

Query: 1798 LALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDV 1977
            LALQREGD V+V++QRTAFPPNFVHSLDGSHMMMTAVACRD+GL FAGVHDSFWTHA DV
Sbjct: 860  LALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDV 919

Query: 1978 DKMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            D+MN+ILREKF+ELY++PILE+LLE+FQ S+P L FPPLP RGDF+L+ + ESPYFFN
Sbjct: 920  DQMNRILREKFVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVLESPYFFN 977


>gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Mimulus guttatus]
          Length = 941

 Score = 1110 bits (2870), Expect = 0.0
 Identities = 534/718 (74%), Positives = 618/718 (86%), Gaps = 1/718 (0%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHE-DVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDR 177
            RIH+FLE+ KK +  K   GD+ + D S E  I+RKRVK+LIK+ ++IEV KLV+S ++ 
Sbjct: 227  RIHSFLEKMKKNE--KREIGDESQVDSSNEAVIMRKRVKSLIKRNRVIEVHKLVRS-EEF 283

Query: 178  KSWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGR 357
            KSWGRD QAKLG  L+ELL ++AYVQPPVNQ ADSPP++ PAFRH FK  T  PG+   +
Sbjct: 284  KSWGRDIQAKLGCCLIELLTQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRLPGQTIVK 343

Query: 358  RYGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQ 537
            RYGV+ECD LV  GLD+T ++M++PYVPML+PPKKWKGY  GG+LFLPSY+MRTHGSR Q
Sbjct: 344  RYGVIECDPLVLAGLDKTVKHMIIPYVPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSRHQ 403

Query: 538  QDAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPE 717
            QDA+K+V   QMQKV+EALDTLG TKWRVNKR+L VVE +WA GGN+AGLV+RED+PIPE
Sbjct: 404  QDAVKTVTSKQMQKVYEALDTLGNTKWRVNKRILTVVENIWAAGGNIAGLVNREDIPIPE 463

Query: 718  KQHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRG 897
               SED  E + W+WSV K KK N+ERH+QRCD ELKLSVARKMK+EEGFYYPHNLDFRG
Sbjct: 464  LLLSEDMKEAKKWKWSVRKVKKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRG 523

Query: 898  RAYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITF 1077
            RAYPMHPHLNHLSSDLCRGVLEFAEG+PLGK+GLRWLKIH+ANLY GG+EKLSYD R+ F
Sbjct: 524  RAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHVANLYGGGVEKLSYDDRVAF 583

Query: 1078 VENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDG 1257
            VEN++ +I DSA+  + G RWWL AEDPFQCLAACINL EALKS SPHTV SHLPIHQDG
Sbjct: 584  VENNISEIFDSADNSLNGNRWWLKAEDPFQCLAACINLVEALKSPSPHTVISHLPIHQDG 643

Query: 1258 SCNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALL 1437
            SCNGLQHYAALGR            G+KP+DVYSEIA RV NI+KRD EKDP T   AL+
Sbjct: 644  SCNGLQHYAALGRDSFEAAAVNLVAGDKPSDVYSEIAERVHNIMKRDSEKDPETDRHALI 703

Query: 1438 ARILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVT 1617
            A++LI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG ITDD+LLFSA+CYAAKVT
Sbjct: 704  AKVLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDKLLFSAACYAAKVT 763

Query: 1618 MTALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQV 1797
            + ALGE+FQ AR+IM WLGDCAK+IASEN+PV+WTTPLGLPVVQPY KS+RH+IRTSLQV
Sbjct: 764  LAALGELFQAARAIMAWLGDCAKIIASENEPVRWTTPLGLPVVQPYFKSQRHVIRTSLQV 823

Query: 1798 LALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDV 1977
            LALQREGD V+V++QRTAFPPNFVHSLDGSHMMMTA+ACRD+GL FAGVHDSFWTHA DV
Sbjct: 824  LALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDV 883

Query: 1978 DKMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            D+MNQILR+KF++LY+MPILENLLESF+TS+PTL+FPPLP+RGDF L+ + ESPYFFN
Sbjct: 884  DRMNQILRQKFVDLYSMPILENLLESFETSYPTLKFPPLPNRGDFLLEQVIESPYFFN 941


>emb|CBL69150.1| RNA polymerase [Nuphar advena]
          Length = 985

 Score = 1095 bits (2833), Expect = 0.0
 Identities = 526/717 (73%), Positives = 612/717 (85%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRK 180
            RI+NF ++ KK      +  + HE+ SK QE LRKRV NL+KK+K+ +VQ LV+ ADD +
Sbjct: 271  RIYNFFQKIKKSTRENQILSENHENESKNQEALRKRVTNLLKKKKIRDVQLLVE-ADDVE 329

Query: 181  SWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRR 360
             WGRD+ AKLGSR ++LLI+T YVQPP+NQLA+ PPEI PAFRHTFKT   E      +R
Sbjct: 330  PWGRDSHAKLGSRXIDLLIQTXYVQPPLNQLAZGPPEIRPAFRHTFKTXKKEXDNSV-KR 388

Query: 361  YGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQ 540
            YG++ECD LVRKGLD TAR++V+PY+PMLIPPKKW GY  GGHLFLPSYVMRTHG++QQ+
Sbjct: 389  YGIIECDPLVRKGLDATARHLVIPYMPMLIPPKKWTGYDKGGHLFLPSYVMRTHGAKQQR 448

Query: 541  DAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEK 720
            DA+KSVP+ Q+++VFEALDTLG TKWRVNKR+L V+++LWA G  +AGLVD  D+ +PEK
Sbjct: 449  DALKSVPKXQLKEVFEALDTLGSTKWRVNKRVLDVIDSLWASGRPIAGLVDHSDIALPEK 508

Query: 721  QHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGR 900
              +ED  +++ WRWSV K KK N ERHAQRCDIELKLSVARKM+ E+GFYYPHNLDFRGR
Sbjct: 509  PCTEDEAQMRRWRWSVKKVKKENCERHAQRCDIELKLSVARKMRKEDGFYYPHNLDFRGR 568

Query: 901  AYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFV 1080
            AYPMHPHLNHL SDLCRG+LEFAEGKPLGKTGLRWLKIHLANLY GG++KLS+DGR+TFV
Sbjct: 569  AYPMHPHLNHLGSDLCRGILEFAEGKPLGKTGLRWLKIHLANLYGGGVDKLSFDGRLTFV 628

Query: 1081 ENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGS 1260
            ENHL DI DSAE+PIEG++WWLNAEDPFQCLAACI+LS ALKS+SP    SH+P+H DGS
Sbjct: 629  ENHLADIFDSAERPIEGRQWWLNAEDPFQCLAACIDLSXALKSSSPEDAISHIPVHLDGS 688

Query: 1261 CNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLA 1440
            CNGLQHYAALGR            GEKP DVYS IAARV+ I+ RD +KDPA +P +LLA
Sbjct: 689  CNGLQHYAALGRDRLGAASVNLVSGEKPXDVYSGIAARVMEIVVRDSKKDPAVHPTSLLA 748

Query: 1441 RILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTM 1620
            RILIDQVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+  ITDD+LLFSA+CYAAKVT+
Sbjct: 749  RILIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERDFITDDKLLFSAACYAAKVTL 808

Query: 1621 TALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVL 1800
            +AL EMFQ ARSIM WLGDCAKVIASEN+PV+WTTPLGLPVVQPY K  RHL+RTSLQVL
Sbjct: 809  SALEEMFQAARSIMSWLGDCAKVIASENEPVRWTTPLGLPVVQPYWKQSRHLVRTSLQVL 868

Query: 1801 ALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVD 1980
            ALQRE + V VKRQ+TAFPPNFVHSLDGSHMMMTAVAC+ +GL+FAGVHDS+WTHA DVD
Sbjct: 869  ALQRESNKVLVKRQKTAFPPNFVHSLDGSHMMMTAVACKLAGLNFAGVHDSYWTHACDVD 928

Query: 1981 KMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
             M++ILR KF+ELY+MPILENLLESFQTSFPTL FPPLPDRGDFDL+ + ESPYFFN
Sbjct: 929  DMSRILRLKFVELYSMPILENLLESFQTSFPTLVFPPLPDRGDFDLQEVLESPYFFN 985


>emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
          Length = 989

 Score = 1095 bits (2832), Expect = 0.0
 Identities = 522/717 (72%), Positives = 614/717 (85%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRK 180
            +IH+FLE+TK  +  KN   D  ED+ KE+EI R RVK+LIK+++L E  KLV S +D K
Sbjct: 277  KIHSFLEKTKNIR--KNAS-DLPEDLLKEKEIQRNRVKSLIKRKRLFEAAKLVTS-EDSK 332

Query: 181  SWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRR 360
            SW +D QAKLGSRL+ELLI+TAY+Q P +Q AD+PP++ PAFRH FK + NE G++  +R
Sbjct: 333  SWSQDTQAKLGSRLIELLIDTAYIQHPTSQSADTPPDVRPAFRHKFKILNNELGQQVVKR 392

Query: 361  YGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQ 540
            YGV+ECD LV KG+DR+AR M++PYVPMLIPPK WKGY  GG+LFLPSYVMRTHGSR+QQ
Sbjct: 393  YGVIECDPLVLKGIDRSARYMIIPYVPMLIPPKNWKGYDKGGYLFLPSYVMRTHGSRKQQ 452

Query: 541  DAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEK 720
            DA++  P  QMQKVFEAL+TLG TKWR+N+++L VVE LWA GGN+ GLV+ +DVP+PEK
Sbjct: 453  DAMRKTPPQQMQKVFEALNTLGHTKWRINRKVLGVVENLWASGGNIGGLVNCDDVPLPEK 512

Query: 721  QHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGR 900
              +EDP EI  W+WSV KAKK NRERHA RCD+ELK+SVA+KMK+EEGFYYPHNLDFRGR
Sbjct: 513  PLTEDPAEIDTWKWSVRKAKKINRERHALRCDVELKISVAQKMKDEEGFYYPHNLDFRGR 572

Query: 901  AYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFV 1080
            AYPMHPHLNHLSSDLCRGVLEFA G+PLGKTGL WLKIHLAN+YAGG++KLSY+ R  FV
Sbjct: 573  AYPMHPHLNHLSSDLCRGVLEFASGRPLGKTGLHWLKIHLANVYAGGVDKLSYEARAAFV 632

Query: 1081 ENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGS 1260
            ENHL ++ DSA  PI G RWWL+AEDPFQCLAACI+L+ AL S+SPH+  S+LPIHQDGS
Sbjct: 633  ENHLEEVFDSATNPINGNRWWLSAEDPFQCLAACIDLTGALNSSSPHSFISYLPIHQDGS 692

Query: 1261 CNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLA 1440
            CNGLQHYAALGR            GE+PADVYSEIA RV  I+++D  KDP T P A+LA
Sbjct: 693  CNGLQHYAALGRDSKEAAAVNLVAGEEPADVYSEIAVRVREIMEKDSRKDPKTDPHAVLA 752

Query: 1441 RILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTM 1620
            ++L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG ITDDRLLFSA+CY+AKVTM
Sbjct: 753  KVLVDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGVITDDRLLFSAACYSAKVTM 812

Query: 1621 TALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVL 1800
            +ALG++FQ AR IM WLGDCAKVIASENQPV+WTTPLGLPVVQPY KS+RHLI+TSLQVL
Sbjct: 813  SALGQLFQAARGIMDWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSKRHLIKTSLQVL 872

Query: 1801 ALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVD 1980
            ALQ+EG+ ++VK+QRTAFPPN+VHSLDG+HMMMTAVACRD+GL FAGVHDSFWTHA DV+
Sbjct: 873  ALQQEGEGIEVKKQRTAFPPNYVHSLDGTHMMMTAVACRDAGLQFAGVHDSFWTHACDVE 932

Query: 1981 KMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            KMNQILR KF+ELYNMPILENLLESFQT++P   FPPLP+RGDFDL+ + ESPYFFN
Sbjct: 933  KMNQILRVKFVELYNMPILENLLESFQTAYPASTFPPLPERGDFDLEEVLESPYFFN 989


>ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [Amborella trichopoda]
            gi|548861119|gb|ERN18503.1| hypothetical protein
            AMTR_s00065p00022170 [Amborella trichopoda]
          Length = 987

 Score = 1092 bits (2823), Expect = 0.0
 Identities = 527/717 (73%), Positives = 606/717 (84%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRK 180
            RIH+FLE+TKK        G++ E +SKEQE LRKRV NL+K QKL EV+KLV+  DD K
Sbjct: 272  RIHDFLEKTKKKSRRGKKVGEESESLSKEQENLRKRVTNLMKMQKLREVRKLVRQGDDVK 331

Query: 181  SWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRR 360
             WG+DA AKLGSRL+EL I+TAY+QPPV+Q A+ PPEI PAFRHTF+T T +  ++  RR
Sbjct: 332  PWGQDAHAKLGSRLIELFIKTAYIQPPVDQQAEGPPEIRPAFRHTFRTFTKDR-QKFCRR 390

Query: 361  YGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQ 540
            YGV+ECD LV KGLD+TAR+MV  Y PMLI PK W+GY  GG+L LPS +MR HG++QQ+
Sbjct: 391  YGVIECDPLVHKGLDKTARHMVTAYTPMLIRPKPWRGYDKGGYLVLPSQIMRIHGAKQQR 450

Query: 541  DAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEK 720
            +A+K+VP+ Q+Q VFEALDTLG TKWRVNKR+L VV  +WARGG +AGLVDREDV +PEK
Sbjct: 451  EAVKNVPQKQLQNVFEALDTLGSTKWRVNKRILDVVNRVWARGGGIAGLVDREDVLLPEK 510

Query: 721  QHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGR 900
              +ED  EI+ WRWSV KAKK N ERH+QRCD+ELKLSVARKM+ EEGFYYPHNLDFRGR
Sbjct: 511  PDTEDEMEIRKWRWSVKKAKKVNSERHSQRCDLELKLSVARKMREEEGFYYPHNLDFRGR 570

Query: 901  AYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFV 1080
            AYPMHPHLNHL SDLCRG+LEFAEG+PLGK+GLRW KIHLANLYA G++KLSYDGR+ FV
Sbjct: 571  AYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWSKIHLANLYACGVDKLSYDGRLAFV 630

Query: 1081 ENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGS 1260
            ENHL DI DSAE+P+EGKRWWLNAEDPFQCLAAC+NL EALKS +P  V SH+P+HQDGS
Sbjct: 631  ENHLDDIFDSAERPLEGKRWWLNAEDPFQCLAACMNLFEALKSPTPENVISHMPVHQDGS 690

Query: 1261 CNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLA 1440
            CNGLQHYAALGR            GEKPADVYS IAARVL I+KRD EK PA+ P A LA
Sbjct: 691  CNGLQHYAALGRDRLGAAAVNLVAGEKPADVYSGIAARVLEIMKRDSEKGPASNPNAFLA 750

Query: 1441 RILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTM 1620
            R L+DQVDRKLVKQTVMTSVYGVTY+GAR+QI RRL+E+G ITDD  LF ASCYAAKVT+
Sbjct: 751  RALVDQVDRKLVKQTVMTSVYGVTYIGARDQICRRLKERGHITDDSQLFRASCYAAKVTL 810

Query: 1621 TALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVL 1800
            TALGE FQ AR+IM WLGDCAKVIASEN+PV+WTTPLGLPVVQPYRK  RHL++TSLQVL
Sbjct: 811  TALGETFQAARNIMSWLGDCAKVIASENEPVRWTTPLGLPVVQPYRKFARHLVKTSLQVL 870

Query: 1801 ALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVD 1980
            ALQRE + V VKRQRTAF PNFVHSLDGSHMMMTA+AC+  GL+FAGVHDS+WTHA DVD
Sbjct: 871  ALQRESNSVMVKRQRTAFAPNFVHSLDGSHMMMTAIACKKIGLNFAGVHDSYWTHACDVD 930

Query: 1981 KMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            +MN ILREKF+ELY+MPILENLLE FQTSFPTL FP +P+RGDFDL+++ ESPYFFN
Sbjct: 931  EMNWILREKFVELYSMPILENLLEGFQTSFPTLVFPAVPERGDFDLRDVLESPYFFN 987


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1086 bits (2808), Expect = 0.0
 Identities = 525/717 (73%), Positives = 613/717 (85%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRK 180
            RI + LE+ +  Q  K V  D  E ++KE+E+LRK+V  LI+++KL EVQKL+K  ++ K
Sbjct: 263  RIQSILEKARSNQRTK-VRADT-ECLTKEKEVLRKQVNGLIRRRKLKEVQKLLKK-EEFK 319

Query: 181  SWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRR 360
            +WGRD QAKLGSRL+ELLIE+A++QPPV+Q ADSPP+I PAF H FK +   PG+   ++
Sbjct: 320  AWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKK 379

Query: 361  YGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQ 540
            YGVVECD +V  GLDRTA++M++PY+PML+PPKKWKGY  GGH FLPSYVMRTHGS +QQ
Sbjct: 380  YGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQ 439

Query: 541  DAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEK 720
            DA+K++   QMQKVFEALD LG TKWRVN+ +L+VVE+LWA+GGN AGLVDR+DVPIPEK
Sbjct: 440  DAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEK 499

Query: 721  QHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGR 900
                D TE+Q WRWS+ KAKK N+E H+QRCD+ELKLSVARKMK+EEGFYYPHNLDFRGR
Sbjct: 500  PLG-DLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGR 558

Query: 901  AYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFV 1080
            AYPMHPHLNHLSSDLCRGVLEFAEG+PLGK+GL WLKIHLANLYAGG+EKLSYD R+ FV
Sbjct: 559  AYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFV 618

Query: 1081 ENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGS 1260
            ++HL +I DSA  P+ G RWWL AEDPFQCLAAC+NLSEALKS++PHTV S+LPIHQDGS
Sbjct: 619  DDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGS 678

Query: 1261 CNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLA 1440
            CNGLQHYAALGR            GEKPADVYSEIAARV  I+ RD  KDP T P A LA
Sbjct: 679  CNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLA 738

Query: 1441 RILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTM 1620
            ++LIDQVDRKLVKQTVMTSVYGVTY+GAREQIKRRLEEKG I+DDRL F ASCYAAKVT+
Sbjct: 739  KLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISDDRLRFRASCYAAKVTL 798

Query: 1621 TALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVL 1800
            +ALGE+F+ AR IMGWLGDCAKVIA +NQPV+WTTPLGLPVVQPY KSERHLIRTSLQVL
Sbjct: 799  SALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVL 858

Query: 1801 ALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVD 1980
            ALQREG+ VDV++QRTAFPPNFVHSLDGSHMM+TA+ACRD+GL FAGVHDSFWTHA DVD
Sbjct: 859  ALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVD 918

Query: 1981 KMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            +MN ILREKF+ELY+MP+LE+LLE F+T++P L FP LP RGDFDL+ + +SPYFFN
Sbjct: 919  RMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPGRGDFDLQEVLKSPYFFN 975


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1086 bits (2808), Expect = 0.0
 Identities = 525/717 (73%), Positives = 613/717 (85%)
 Frame = +1

Query: 1    RIHNFLERTKKFQGLKNVEGDKHEDVSKEQEILRKRVKNLIKKQKLIEVQKLVKSADDRK 180
            RI + LE+ +  Q  K V  D  E ++KE+E+LRK+V  LI+++KL EVQKL+K  ++ K
Sbjct: 263  RIQSILEKARSNQRTK-VRADT-ECLTKEKEVLRKQVNGLIRRRKLKEVQKLLKK-EEFK 319

Query: 181  SWGRDAQAKLGSRLVELLIETAYVQPPVNQLADSPPEIWPAFRHTFKTITNEPGRRAGRR 360
            +WGRD QAKLGSRL+ELLIE+A++QPPV+Q ADSPP+I PAF H FK +   PG+   ++
Sbjct: 320  AWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPAFWHGFKPVAKTPGQNFVKK 379

Query: 361  YGVVECDQLVRKGLDRTARNMVVPYVPMLIPPKKWKGYANGGHLFLPSYVMRTHGSRQQQ 540
            YGVVECD +V  GLDRTA++M++PY+PML+PPKKWKGY  GGH FLPSYVMRTHGS +QQ
Sbjct: 380  YGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQ 439

Query: 541  DAIKSVPRTQMQKVFEALDTLGRTKWRVNKRLLAVVETLWARGGNVAGLVDREDVPIPEK 720
            DA+K++   QMQKVFEALD LG TKWRVN+ +L+VVE+LWA+GGN AGLVDR+DVPIPEK
Sbjct: 440  DAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLWAQGGNTAGLVDRKDVPIPEK 499

Query: 721  QHSEDPTEIQNWRWSVGKAKKCNRERHAQRCDIELKLSVARKMKNEEGFYYPHNLDFRGR 900
                D TE+Q WRWS+ KAKK N+E H+QRCD+ELKLSVARKMK+EEGFYYPHNLDFRGR
Sbjct: 500  PLG-DLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNLDFRGR 558

Query: 901  AYPMHPHLNHLSSDLCRGVLEFAEGKPLGKTGLRWLKIHLANLYAGGIEKLSYDGRITFV 1080
            AYPMHPHLNHLSSDLCRGVLEFAEG+PLGK+GL WLKIHLANLYAGG+EKLSYD R+ FV
Sbjct: 559  AYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSYDERLAFV 618

Query: 1081 ENHLFDILDSAEKPIEGKRWWLNAEDPFQCLAACINLSEALKSTSPHTVTSHLPIHQDGS 1260
            ++HL +I DSA  P+ G RWWL AEDPFQCLAAC+NLSEALKS++PHTV S+LPIHQDGS
Sbjct: 619  DDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGS 678

Query: 1261 CNGLQHYAALGRXXXXXXXXXXXXGEKPADVYSEIAARVLNIIKRDCEKDPATYPAALLA 1440
            CNGLQHYAALGR            GEKPADVYSEIAARV  I+ RD  KDP T P A LA
Sbjct: 679  CNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDASKDPTTNPNASLA 738

Query: 1441 RILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGRITDDRLLFSASCYAAKVTM 1620
            ++LIDQVDRKLVKQTVMTSVYGVTY+GAREQIKRRLEEKG I+DDRL F ASCYAAKVT+
Sbjct: 739  KLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISDDRLRFRASCYAAKVTL 798

Query: 1621 TALGEMFQDARSIMGWLGDCAKVIASENQPVKWTTPLGLPVVQPYRKSERHLIRTSLQVL 1800
            +ALGE+F+ AR IMGWLGDCAKVIA +NQPV+WTTPLGLPVVQPY KSERHLIRTSLQVL
Sbjct: 799  SALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVL 858

Query: 1801 ALQREGDFVDVKRQRTAFPPNFVHSLDGSHMMMTAVACRDSGLHFAGVHDSFWTHAGDVD 1980
            ALQREG+ VDV++QRTAFPPNFVHSLDGSHMM+TA+ACRD+GL FAGVHDSFWTHA DVD
Sbjct: 859  ALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVD 918

Query: 1981 KMNQILREKFIELYNMPILENLLESFQTSFPTLRFPPLPDRGDFDLKNITESPYFFN 2151
            +MN ILREKF+ELY+MP+LE+LLE F+T++P L FP LP RGDFDL+ + +SPYFFN
Sbjct: 919  RMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPGRGDFDLQEVLKSPYFFN 975