BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00003954
         (1963 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32760.3| unnamed protein product [Vitis vinifera]              624   e-176
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   621   e-175
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   618   e-174
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   612   e-172
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   611   e-172
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   611   e-172
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   598   e-168
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   597   e-168
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   597   e-168
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   594   e-167
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   588   e-165
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   574   e-161
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   555   e-155
gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]     545   e-152
gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus...   540   e-150
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF,...   529   e-147
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   528   e-147
ref|XP_007144359.1| hypothetical protein PHAVU_007G149600g [Phas...   525   e-146
ref|XP_006410876.1| hypothetical protein EUTSA_v10016472mg [Eutr...   522   e-145
ref|XP_006827418.1| hypothetical protein AMTR_s00009p00072720 [A...   520   e-144

>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  624 bits (1609), Expect = e-176
 Identities = 329/567 (58%), Positives = 423/567 (74%), Gaps = 3/567 (0%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRSSIPSSAPILHEQATLAVTSTPTTSITRHFPTSVLLQEQ 297
            ME G N+L S+P F P+THFR+S  SS  +LH+Q   AV S PTT I R FPTSVLLQEQ
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNS-SSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQ 58

Query: 298  RDEFRPLLQ-IREDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXXXXX 474
            RDE+RP  Q +++++T QATL++RQ +  VS  +E+ S   +QY+ +FER+         
Sbjct: 59   RDEYRPFPQALKDERTFQATLEKRQMEIVVS-ADEENSDDHNQYMVNFERQLLLQPGLWY 117

Query: 475  XXXXXXKGEK-PLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEESNLF 651
                   GEK P  S   +SI  D +  + +KPCDVLALAK+A+ AS+QA SL E + L 
Sbjct: 118  SLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLL 177

Query: 652  GADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHETPSWRTAA 831
            GAD +DS P                  VRS RLLERR+K+ R  K    VHE    R A 
Sbjct: 178  GADLEDS-PSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPK--VAVHENHGSRRAE 234

Query: 832  KHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFDRE 1011
               K++EG+DP DPLRLFL G ET++LLTAKEE EL  QIQEL RLEEVK++LQS   RE
Sbjct: 235  VQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKRE 294

Query: 1012 PTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQDG 1191
            PT++EWA+AVG+SC+ L+SQ+HSGNRSR+K+ YAN RMVVH+AKQY   GL+LQDL+Q+G
Sbjct: 295  PTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEG 354

Query: 1192 SIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNARE 1371
            S+GLM S+EKFKP   CRF+SYAYWWIRQA+RKAIFQ SRT+RLPEN+++ L +++ A+ 
Sbjct: 355  SMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKR 414

Query: 1372 QFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADTEV 1548
             F+QEG H PT EE+A+RVG+T+ +L+ LL+ TR+PLSMQQPVW+DQDTTFQE+TADT +
Sbjct: 415  LFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGI 474

Query: 1549 EIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKERVR 1728
            EIPD+SV KQLMR+HVRNLL +L+PKERRI+RLR+GI DG  ++LS+IGLVFG SKERVR
Sbjct: 475  EIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVR 534

Query: 1729 QLENQAMGKLRKCMSSQGLEAYSNLLI 1809
            QLE +A+ KL++C+SS GLE+Y++LL+
Sbjct: 535  QLEQRALHKLKQCLSSHGLESYTDLLV 561


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  621 bits (1601), Expect = e-175
 Identities = 336/575 (58%), Positives = 423/575 (73%), Gaps = 11/575 (1%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRSSIPSSAP-----ILHEQATLAVTSTPTTSITRHFPTSV 282
            ME GR+ L SS  F   TH R  +PSS+P     +LHEQA  AVTS P TS+ RHFPTSV
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 283  LLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQY-LKDFERRXXX 456
            LLQEQRDEF+PLL + +EDKTS+A LDR Q + G S  E+      D Y L +  +    
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDI--DDFYPLVNSSKPQLL 118

Query: 457  XXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAE 636
                         G KP   +T +S+   ++K + ++PC+V+ALAK+A+ ASR+AASLAE
Sbjct: 119  NHDILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAE 178

Query: 637  ESNLFGADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKR---HRVSKSSAVVHE 807
            +S   GADFDD    +G+T             VRS R+LERR KR    +V KS  + HE
Sbjct: 179  DSQSMGADFDD----LGYTSLANWIVEEEKT-VRSTRILERRRKRIKTRKVPKSKVIGHE 233

Query: 808  TPSWRTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRK 987
            + S+  +    K+SEGF+PNDPLRLFL G ET+QLLTAKEE EL A++Q+L +LEEVK +
Sbjct: 234  SNSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSR 293

Query: 988  LQSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLS 1167
            LQ+QF REPTLIEWA+AVG+SC+ LKSQ+ SG  SREK+ YAN RMVVH+AKQY   GL 
Sbjct: 294  LQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLG 353

Query: 1168 LQDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTL 1347
            LQDLMQ+GS+GLMKS+EKFKPQ  CRF++YAYWWIRQ +RKAIFQ SRT+RLPENV++ L
Sbjct: 354  LQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLL 413

Query: 1348 RQIRNAREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQ 1524
             ++  A++  +QEG H P  EELA+RVG+TV +LE LL +TR+PLSMQQPVW+DQDTTFQ
Sbjct: 414  GKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQ 473

Query: 1525 EITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVF 1704
            E+TADT VEIPD+SV KQLMR+HVR+LLSIL+ +ER I+RLRYGIEDG+Q+SLS+IG +F
Sbjct: 474  EVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMF 533

Query: 1705 GISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1809
            G+SKERVRQLE++A  KLR+ + SQGL AY  LL+
Sbjct: 534  GLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 568


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  618 bits (1594), Expect = e-174
 Identities = 328/577 (56%), Positives = 422/577 (73%), Gaps = 13/577 (2%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRSSIPSSAP----------ILHEQATLAVTSTPTTSITRH 267
            ME G N+L S+P F P+THFR+S  S             +LH+Q   AV S PTT I R 
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTT-IARK 59

Query: 268  FPTSVLLQEQRDEFRPLLQ-IREDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFER 444
            FPTSVLLQEQRDE+RP  Q +++++T QATL++RQ +  VS  +E+ S   +QY+ +FER
Sbjct: 60   FPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVS-ADEENSDDHNQYMVNFER 118

Query: 445  RXXXXXXXXXXXXXXXKGEK-PLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQA 621
            +                GEK P  S   +SI  D +  + +KPCDVLALAK+A+ AS+QA
Sbjct: 119  QLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQA 178

Query: 622  ASLAEESNLFGADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVV 801
             SL E + L GAD +DS P                  VRS RLLERR+K+ R  K    V
Sbjct: 179  VSLYENAKLLGADLEDS-PSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPK--VAV 235

Query: 802  HETPSWRTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVK 981
            HE    R A    K++EG+DP DPLRLFL G ET++LLTAKEE EL  QIQEL RLEEVK
Sbjct: 236  HENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVK 295

Query: 982  RKLQSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWG 1161
            ++LQS   REPT++EWA+AVG+SC+ L+SQ+HSGNRSR+K+ YAN RMVVH+AKQY   G
Sbjct: 296  KRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRG 355

Query: 1162 LSLQDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFN 1341
            L+LQDL+Q+GS+GLM S+EKFKP   CRF+SYAYWWIRQA+RKAIFQ SRT+RLPEN+++
Sbjct: 356  LNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYS 415

Query: 1342 TLRQIRNAREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTT 1518
             L +++ A+  F+QEG H PT EE+A+RVG+T+ +L+ LL+ TR+PLSMQQPVW+DQDTT
Sbjct: 416  LLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTT 475

Query: 1519 FQEITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGL 1698
            FQE+TADT +EIPD+SV KQLMR+HVRNLL +L+PKERRI+RLR+GI DG  ++LS+IGL
Sbjct: 476  FQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGL 535

Query: 1699 VFGISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1809
            VFG SKERVRQLE +A+ KL++C+SS GLE+Y++LL+
Sbjct: 536  VFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 572


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  612 bits (1579), Expect = e-172
 Identities = 322/566 (56%), Positives = 408/566 (72%), Gaps = 2/566 (0%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRSSIPSSAPILHEQATLAVTSTPTTSITRHFPTSVLLQEQ 297
            ME GRNLL S P F  +T  + S+ SSA      +  AV S PT+S+ RHFPTSVLLQEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQ 60

Query: 298  RDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXXXXX 474
            RDE+RPLL + +EDKTSQAT D R  +    F EEK S   DQ ++D E +         
Sbjct: 61   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 120

Query: 475  XXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEESNLFG 654
                  +GE P +S+T QS+  D ++ V  +P D +ALA++A+ AS++AASLAE   L G
Sbjct: 121  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNG 180

Query: 655  ADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHETPSWRTAAK 834
            A+F D                     VRS + LERR+K+ +VSK     HET + R A+ 
Sbjct: 181  AEFTDI-----SLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSRKASV 235

Query: 835  HSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFDREP 1014
              KLSEGFD NDPLRLFL G ET++LLTA EE EL AQIQ+L RLE+ K KLQSQF REP
Sbjct: 236  KKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 295

Query: 1015 TLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQDGS 1194
            TLIEWAKA+G+SCR LKS++HSGN SREK+  AN R+VVHVAKQY   G+ L DL+Q+GS
Sbjct: 296  TLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGS 355

Query: 1195 IGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNAREQ 1374
            +GLMKS+EKFKPQ  CRF+SYAYWW+RQ IRKAIFQ SRT+RLPEN++  L ++  A+  
Sbjct: 356  MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRL 415

Query: 1375 FVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADTEVE 1551
            ++QEG H P  E+LA+RVG+TV +LE L+  TR+PLSMQQPVW+DQDTTFQEITADT VE
Sbjct: 416  YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 475

Query: 1552 IPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKERVRQ 1731
            IPD+SV KQLMR+HVRNLL++L+PKER IVRLR+GIEDG+ KSLS++G +FG+SKERVRQ
Sbjct: 476  IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 535

Query: 1732 LENQAMGKLRKCMSSQGLEAYSNLLI 1809
            LE++A+ +L++ +  +    Y++LLI
Sbjct: 536  LESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  611 bits (1576), Expect = e-172
 Identities = 325/574 (56%), Positives = 413/574 (71%), Gaps = 10/574 (1%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRSSIPSSAP-------ILH-EQATLAVTSTPTTSITRHFP 273
            ME GRNLL S P F  +T  + S+ SSA        ++H EQ+  AV S PT+S+ RHFP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 274  TSVLLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRX 450
            TSVLLQEQRDE+RPLL + +EDKTSQAT D R  +    F EEK S   DQ ++D E + 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 451  XXXXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASL 630
                          +GE P +S+T QS+  D ++ V  +P D +ALA++A+ AS++AASL
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 631  AEESNLFGADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHET 810
            AE   L GA+F D                     VRS + LERR+K+ +VSK     HET
Sbjct: 181  AENPKLNGAEFTDI-----SLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHET 235

Query: 811  PSWRTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKL 990
             + R A+   KLSEGFD NDPLRLFL G ET++LLTA EE EL AQIQ+L RLE+ K KL
Sbjct: 236  YNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL 295

Query: 991  QSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSL 1170
            QSQF REPTLIEWAKA+G+SCR LKS++HSGN SREK+  AN R+VVHVAKQY   G+ L
Sbjct: 296  QSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGL 355

Query: 1171 QDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLR 1350
             DL+Q+GS+GLMKS+EKFKPQ  CRF+SYAYWW+RQ IRKAIFQ SRT+RLPEN++  L 
Sbjct: 356  HDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLS 415

Query: 1351 QIRNAREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQE 1527
            ++  A+  ++QEG H P  E+LA+RVG+TV +LE L+  TR+PLSMQQPVW+DQDTTFQE
Sbjct: 416  RVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQE 475

Query: 1528 ITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFG 1707
            ITADT VEIPD+SV KQLMR+HVRNLL++L+PKER IVRLR+GIEDG+ KSLS++G +FG
Sbjct: 476  ITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG 535

Query: 1708 ISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1809
            +SKERVRQLE++A+ +L++ +  +    Y++LLI
Sbjct: 536  LSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  611 bits (1575), Expect = e-172
 Identities = 325/575 (56%), Positives = 413/575 (71%), Gaps = 11/575 (1%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRSSIPSSAP--------ILH-EQATLAVTSTPTTSITRHF 270
            ME GRNLL S P F  +T  + S+ SSA         ++H EQ+  AV S PT+S+ RHF
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARHF 60

Query: 271  PTSVLLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERR 447
            PTSVLLQEQRDE+RPLL + +EDKTSQAT D R  +    F EEK S   DQ ++D E +
Sbjct: 61   PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQ 120

Query: 448  XXXXXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAAS 627
                           +GE P +S+T QS+  D ++ V  +P D +ALA++A+ AS++AAS
Sbjct: 121  FLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAAS 180

Query: 628  LAEESNLFGADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHE 807
            LAE   L GA+F D                     VRS + LERR+K+ +VSK     HE
Sbjct: 181  LAENPKLNGAEFTDI-----SLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 235

Query: 808  TPSWRTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRK 987
            T + R A+   KLSEGFD NDPLRLFL G ET++LLTA EE EL AQIQ+L RLE+ K K
Sbjct: 236  TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK 295

Query: 988  LQSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLS 1167
            LQSQF REPTLIEWAKA+G+SCR LKS++HSGN SREK+  AN R+VVHVAKQY   G+ 
Sbjct: 296  LQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIG 355

Query: 1168 LQDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTL 1347
            L DL+Q+GS+GLMKS+EKFKPQ  CRF+SYAYWW+RQ IRKAIFQ SRT+RLPEN++  L
Sbjct: 356  LHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLL 415

Query: 1348 RQIRNAREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQ 1524
             ++  A+  ++QEG H P  E+LA+RVG+TV +LE L+  TR+PLSMQQPVW+DQDTTFQ
Sbjct: 416  SRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 475

Query: 1525 EITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVF 1704
            EITADT VEIPD+SV KQLMR+HVRNLL++L+PKER IVRLR+GIEDG+ KSLS++G +F
Sbjct: 476  EITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIF 535

Query: 1705 GISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1809
            G+SKERVRQLE++A+ +L++ +  +    Y++LLI
Sbjct: 536  GLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 570


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  598 bits (1541), Expect = e-168
 Identities = 318/566 (56%), Positives = 402/566 (71%), Gaps = 2/566 (0%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRSSIPSSAPILHEQATLAVTSTPTTSITRHFPTSVLLQEQ 297
            ME GRNLL S P F  +T  + S+ SSA      +  AV S PT+S+ RHFPTSVLLQEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQ 60

Query: 298  RDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXXXXX 474
            RDE+RPLL + +EDKTSQAT D R  +    F EEK S   DQ ++D E +         
Sbjct: 61   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 120

Query: 475  XXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEESNLFG 654
                  +GE P +S+T QS+  D ++ V  +P D +ALA++A+ AS++AASLAE   L G
Sbjct: 121  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNG 180

Query: 655  ADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHETPSWRTAAK 834
            A+F D                     VRS R LERR+K+ +VSK     HET + R A+ 
Sbjct: 181  AEFTDI-----SLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASV 235

Query: 835  HSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFDREP 1014
              KLSEGFDPNDPLRLFL G ET++LLTA EE EL AQIQ+L RLE+ K KLQSQF REP
Sbjct: 236  KKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 295

Query: 1015 TLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQDGS 1194
            TLI       +SCR LKS++HSGN SREK+  AN R+VVHVAKQY   G+ L DL+Q+GS
Sbjct: 296  TLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGS 355

Query: 1195 IGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNAREQ 1374
            +GLMKS+EKFKPQ  CRF+SYAYWW+RQ IRKAIFQ SRT+RLPEN++  L ++  A+  
Sbjct: 356  MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRL 415

Query: 1375 FVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADTEVE 1551
            ++QEG H P  E+LA+RVG+TV +LE L+  TR+PLSMQQPVW+DQDTTFQEITADT VE
Sbjct: 416  YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 475

Query: 1552 IPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKERVRQ 1731
            IPD+SV KQLMR+HVRNLL++L+PKER IVRLR+GIEDG+ KSLS++G +FG+SKERVRQ
Sbjct: 476  IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 535

Query: 1732 LENQAMGKLRKCMSSQGLEAYSNLLI 1809
            LE++A+ +L++ +  +    Y++LLI
Sbjct: 536  LESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  597 bits (1538), Expect = e-168
 Identities = 321/574 (55%), Positives = 407/574 (70%), Gaps = 10/574 (1%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRSSIPSSAP-------ILH-EQATLAVTSTPTTSITRHFP 273
            ME GRNLL S P F  +T  + S+ SSA        ++H EQ+  AV S PT+S+ RHFP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 274  TSVLLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRX 450
            TSVLLQEQRDE+RPLL + +EDKTSQAT D R  +    F EEK S   DQ ++D E + 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 451  XXXXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASL 630
                          +GE P +S+T QS+  D ++ V  +P D +ALA++A+ AS++AASL
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 631  AEESNLFGADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHET 810
            AE   L GA+F D                     VRS R LERR+K+ +VSK     HET
Sbjct: 181  AENPKLNGAEFTDI-----SLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHET 235

Query: 811  PSWRTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKL 990
             + R A+   KLSEGFDPNDPLRLFL G ET++LLTA EE EL AQIQ+L RLE+ K KL
Sbjct: 236  YNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL 295

Query: 991  QSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSL 1170
            QSQF REPTLI       +SCR LKS++HSGN SREK+  AN R+VVHVAKQY   G+ L
Sbjct: 296  QSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGL 355

Query: 1171 QDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLR 1350
             DL+Q+GS+GLMKS+EKFKPQ  CRF+SYAYWW+RQ IRKAIFQ SRT+RLPEN++  L 
Sbjct: 356  HDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLS 415

Query: 1351 QIRNAREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQE 1527
            ++  A+  ++QEG H P  E+LA+RVG+TV +LE L+  TR+PLSMQQPVW+DQDTTFQE
Sbjct: 416  RVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQE 475

Query: 1528 ITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFG 1707
            ITADT VEIPD+SV KQLMR+HVRNLL++L+PKER IVRLR+GIEDG+ KSLS++G +FG
Sbjct: 476  ITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG 535

Query: 1708 ISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1809
            +SKERVRQLE++A+ +L++ +  +    Y++LLI
Sbjct: 536  LSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  597 bits (1538), Expect = e-168
 Identities = 320/565 (56%), Positives = 405/565 (71%), Gaps = 2/565 (0%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRSSIPSSAPILHEQATLAVTSTPTTSITRHFPTSVLLQEQ 297
            ME GR LL SSP F  +TH ++S+ SS  IL EQAT AV+S PTTS  +HFPTSVLLQEQ
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQ 60

Query: 298  RDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXXXXX 474
            RDEFRPL  I +ED+ SQATLDRR+T+ G S  E K S + DQ +++FE +         
Sbjct: 61   RDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYWN 120

Query: 475  XXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEESNLFG 654
                                    DK++ ++P +V+ LAK A+ AS+ AA LA+ +    
Sbjct: 121  L----------------------TDKLIDVEPTNVINLAKRALSASKHAAFLADNN---- 154

Query: 655  ADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHETPSWRTAAK 834
             D D+       +             VRS+R L R++   R  K+  ++ ET   ++A  
Sbjct: 155  TDLDNLASTSSSSFSLEEVKI-----VRSRRHLARQSLNRRAPKTKDLIFETYDSKSADV 209

Query: 835  HSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFDREP 1014
              +LS+GFDPNDPLRLFL G ETKQLLTAKEE EL AQIQ+L  LE VK +L+SQF REP
Sbjct: 210  QKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREP 269

Query: 1015 TLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQDGS 1194
            TL+EWA+AVG+SC  LK Q+HSGNRSREK+  AN RMVVH+AK+Y   GL LQDL+Q+G+
Sbjct: 270  TLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGT 329

Query: 1195 IGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNAREQ 1374
            +GLMKSIEKFKPQ  CRF++YAYWWIRQ I KAIFQ SRT+RLPENV+  L ++  A+  
Sbjct: 330  VGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRS 389

Query: 1375 FVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADTEVE 1551
            ++QEG HQPT EE+A+RVG+ + +LE LL  TR PLSMQQ VWSDQ+TTFQEITADTE+E
Sbjct: 390  YIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIE 449

Query: 1552 IPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKERVRQ 1731
            IPD+SV KQLMR+H+R LL+ILS KERRI+RLR+GIEDG+QKSLS+IG VFG+SKERVRQ
Sbjct: 450  IPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQ 509

Query: 1732 LENQAMGKLRKCMSSQGLEAYSNLL 1806
            LE++A+ KL++C+ S GL+AY++LL
Sbjct: 510  LESRALYKLKQCVGSHGLDAYADLL 534


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  594 bits (1531), Expect = e-167
 Identities = 317/566 (56%), Positives = 403/566 (71%), Gaps = 2/566 (0%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRSSIPSSAPILHEQATLAVTSTPTTSITRHFPTSVLLQEQ 297
            ME GRNLL S P F  +T  + S+ SSA      ++ +V S PT+S+ RHFPTSVLLQEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSAS---SSSSSSVASVPTSSVARHFPTSVLLQEQ 57

Query: 298  RDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXXXXX 474
            RDE+RPLL + +EDKTSQAT D R  +    F EEK S   DQ ++D E +         
Sbjct: 58   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 117

Query: 475  XXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEESNLFG 654
                  +GE P +S+T QS+  D ++ V  +P D +ALA++A+ AS++AASLAE   L G
Sbjct: 118  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNG 177

Query: 655  ADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHETPSWRTAAK 834
            A+F D                     VRS R LERR+K+ +VSK     HET + R A+ 
Sbjct: 178  AEFTDI-----SLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSRKASV 232

Query: 835  HSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFDREP 1014
              KLSEGFDPNDPLRLFL G ET++LLTA EE EL AQIQ+L RLE+ K KLQSQF REP
Sbjct: 233  KKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 292

Query: 1015 TLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQDGS 1194
            TLI       +SCR LKS++HSGN SREK+  AN R+VVHVAKQY   G+ L DL+Q+GS
Sbjct: 293  TLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLLQEGS 352

Query: 1195 IGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNAREQ 1374
            +GLMKS+EKFKPQ  CRF+SYAYWW+RQ IRKAIFQ SRT+RLPEN++  L ++  A+  
Sbjct: 353  MGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEAKRL 412

Query: 1375 FVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADTEVE 1551
            ++QEG H P  E+LA+RVG+TV +LE L+  TR+PLSMQQPVW+DQDTTFQEITADT VE
Sbjct: 413  YIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVE 472

Query: 1552 IPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKERVRQ 1731
            IPD+SV KQLMR+HVRNLL++L+PKER IVRLR+GIEDG+ KSLS++G +FG+SKERVRQ
Sbjct: 473  IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 532

Query: 1732 LENQAMGKLRKCMSSQGLEAYSNLLI 1809
            LE++A+ +L++ +  +    Y++LLI
Sbjct: 533  LESRALYRLKQSLGGKASYGYADLLI 558


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  588 bits (1517), Expect = e-165
 Identities = 319/573 (55%), Positives = 406/573 (70%), Gaps = 9/573 (1%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRSSIPSSAP-------ILHEQATLAVTSTPTTSITRHFPT 276
            ME  R  L S P F  +THF++S+ SS         +LHEQA  AVTS PTTSI R+FPT
Sbjct: 1    METARTFLSSPPPFPSRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNFPT 60

Query: 277  SVLLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXX 453
            SVLLQEQRDEFRPLL I +EDKT QAT+D +Q D G S  E   S   DQ +        
Sbjct: 61   SVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSDQEGICSDVLDQLILHSNLSW- 119

Query: 454  XXXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLA 633
                                S+T QSI  + D+++ ++P +V+ LA++A+ AS++AA LA
Sbjct: 120  --------------------SLTMQSITTNTDELMVVEPTNVIDLARKALSASKEAALLA 159

Query: 634  EESNLFGADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHETP 813
            ++     A+ DD+                    VRS R LER++K  RV+K+  + HE  
Sbjct: 160  QKC----ANLDDTVSTGLEPTDLSNFSLEEVKTVRSTRRLERQSKNRRVTKTKEIFHEPY 215

Query: 814  SWRTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQ 993
            S R A    K++EGFDP DPLRLFL G ETKQLLTAKEE EL  Q+Q+L  LE VK K +
Sbjct: 216  SSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFK 275

Query: 994  SQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQ 1173
             QF R+PTL+EWA AVG+S   ++SQ+HSGNRSREK+  AN RMVVH+AKQY   GLSLQ
Sbjct: 276  LQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQ 335

Query: 1174 DLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQ 1353
            DL+Q+GS+GLMKSIEKFKPQ  CRF++YAYWWIRQ +RKAIFQ SRT+RLPENV++TL +
Sbjct: 336  DLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGK 395

Query: 1354 IRNAREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEI 1530
            +  A+  ++ EG H PT EELAKR+G+T  RLE LL   R+PLSMQQ VW+DQ+TTFQEI
Sbjct: 396  VSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQEI 455

Query: 1531 TADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGI 1710
            TAD EVEIP+L V KQLMR+HV +LL+IL+P+ER+I+RLRYGIEDG++KSLS+IG VFG+
Sbjct: 456  TADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGL 515

Query: 1711 SKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1809
            SKERVRQLE++A+ KL++C++S GLEAY++LL+
Sbjct: 516  SKERVRQLESRALYKLKQCLASHGLEAYADLLV 548


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  574 bits (1479), Expect = e-161
 Identities = 309/574 (53%), Positives = 400/574 (69%), Gaps = 10/574 (1%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRSSI----PSSAPILHEQATLAVTSTPTTSITRHFPTSVL 285
            ME  RNLL   P F  +T  +SS+     SS  + HEQA  A TS P TS+ RHFPTSVL
Sbjct: 1    MEAARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSVL 60

Query: 286  LQEQRDEFRPLLQI---REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXX 456
            LQEQRD++RPL  +   +EDK      D++Q +NG S  EE  S    Q    FE++   
Sbjct: 61   LQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQL--GFEKKLLQ 118

Query: 457  XXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAE 636
                          E P  +   QS+  D  +IV ++P +++ALAK+A+ AS+QAASL+E
Sbjct: 119  WPDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASLSE 178

Query: 637  ESNLFGADFDDSFPRM--GHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHET 810
            +  L   D DDS                      VRS R LER++KR RV +    + ET
Sbjct: 179  DLKL---DLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRV-QPKVTIRET 234

Query: 811  PSWRTAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKL 990
             S R      KLSEGFDPNDPLRLFL G ETKQLLTAKEE EL  Q+Q L RLE+VK KL
Sbjct: 235  YSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSKL 294

Query: 991  QSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSL 1170
            QSQF REPTL+EWA+A+G+ C  L++++HSGN SR+K+ YAN RMVVH+AKQY   GLSL
Sbjct: 295  QSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLSL 354

Query: 1171 QDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLR 1350
            QDL+Q+GS+GLMKS+E+FKPQ  CRF++YAYWWIRQ IRK+I Q SRTVRLPENV   L 
Sbjct: 355  QDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLLS 414

Query: 1351 QIRNAREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQE 1527
            ++ +A++ +++EG H P+ EELA+RVG+TV +L+ LL +TR+PLSMQQ VW DQD TFQE
Sbjct: 415  KVLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQE 474

Query: 1528 ITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFG 1707
            +T DT +EIPD+SV KQLMR+HVRNLLS+LSP+ER I++LR+GIE+ ++ SLS+IG +FG
Sbjct: 475  VTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENSLSEIGNMFG 534

Query: 1708 ISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1809
            +SKERVRQLE++A+ KL++C++  GL AY +LL+
Sbjct: 535  LSKERVRQLESRALYKLKQCLNKHGLGAYVDLLV 568


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  555 bits (1430), Expect = e-155
 Identities = 311/578 (53%), Positives = 401/578 (69%), Gaps = 14/578 (2%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRSSIPSSAP-----ILHEQATLAVTSTPTTSITRHFPTSV 282
            ME GR+ L SS  F   T  R  +P S+P     +LHEQA  AVTS PT+ ITRHFPTSV
Sbjct: 1    MEAGRHFLSSSSAFPSTTQLRHPLPPSSPSTSVLMLHEQAAPAVTSVPTSFITRHFPTSV 60

Query: 283  LLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQY--LKDFERRXX 453
            LLQEQRDEF+PLL I +E+K SQATLDR Q +N  +   E+     D Y  +KDF +   
Sbjct: 61   LLQEQRDEFKPLLHIFKEEKASQATLDRIQIENTTA---EEDFNIDDFYKLVKDFRQLHV 117

Query: 454  XXXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLA 633
                              L S TT ++ +D +      P DVL LAK A+ AS +AASLA
Sbjct: 118  TPSQIGENSPTG----SALESNTTANVHMDVE------PSDVLTLAKHALSASLEAASLA 167

Query: 634  EESNLFGADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHETP 813
            E S    A  ++S                    VRS +LLERR KR  + K + +  + P
Sbjct: 168  ETSKSISAGLNES---------TSLGLGWEEETVRSTQLLERRRKR--LKKRNLLNSKVP 216

Query: 814  SWRTAAKHS-----KLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEV 978
            ++  ++ +S     K  EG +PNDPLRLFL G ET+QLLT KEE EL A++Q++ +LE V
Sbjct: 217  NYENSSSNSSDLRRKYREGLNPNDPLRLFLWGPETRQLLTLKEETELIARVQDVFKLEAV 276

Query: 979  KRKLQSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRW 1158
            K +LQSQF REPTLIEWA+AVG+SC+ L+SQ+  G  SREK+ Y+N RMVVH+AKQY   
Sbjct: 277  KSRLQSQFGREPTLIEWAEAVGISCQMLQSQLRCGTSSREKLIYSNLRMVVHIAKQYQGR 336

Query: 1159 GLSLQDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVF 1338
            GL LQDL+Q+GS+GLMKS+EKFKPQ  CRF++YAYWW+RQ IRKAIFQ SRT+RLPENV+
Sbjct: 337  GLGLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWVRQTIRKAIFQHSRTIRLPENVY 396

Query: 1339 NTLRQIRNAREQFVQEGHQ-PTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDT 1515
              L ++  A++ ++QEG+Q P+ EELA+RVG++V +L  LL  TR+P+SMQQ VW+DQDT
Sbjct: 397  TLLGKVLEAKKSYIQEGNQNPSREELARRVGMSVEKLGKLLYCTRMPVSMQQTVWADQDT 456

Query: 1516 TFQEITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIG 1695
            TFQE+TADT +EIPDLSV KQLMR+HVRNLL  L  +ER+I+RLRYGIEDG+Q+SL++IG
Sbjct: 457  TFQEVTADTGIEIPDLSVAKQLMRQHVRNLLHTLEKRERQIIRLRYGIEDGKQRSLTEIG 516

Query: 1696 LVFGISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1809
             +FG+SKERVRQLE++A  KL++ + SQGL AY+ LL+
Sbjct: 517  EIFGLSKERVRQLESRAFLKLKESLGSQGLGAYAPLLV 554


>gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 543

 Score =  545 bits (1404), Expect = e-152
 Identities = 296/567 (52%), Positives = 389/567 (68%), Gaps = 3/567 (0%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRSSIPSSAPI-LHEQATLAVTSTPTTSITRHFPTSVLLQE 294
            MEVGRNLL   P F  +TH R+ +PSS+           +TS P TSI + F TSVLLQE
Sbjct: 1    MEVGRNLLSPPPSFPSRTHLRNYLPSSSSASTSANVATGITSMPATSIAQPFSTSVLLQE 60

Query: 295  QRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXXXX 471
            QRDEF+PLL++ +EDKTSQ  L+RRQ D+G    E+      +Q++ +FER         
Sbjct: 61   QRDEFKPLLRVNKEDKTSQGVLNRRQNDSGALVHEDTLE-DYNQFVWEFERPSVHWPGFW 119

Query: 472  XXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEESNLF 651
                      K   S+T ++      K V ++  D +ALAK+A++AS++AASLAEES L 
Sbjct: 120  HVLPSLKTKVKLSSSLTMETTMGSCTKDVDVEVSDAIALAKKALMASKEAASLAEESKLV 179

Query: 652  GADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHETPSWRTAA 831
            G D DD                     VRS RLLERR+KR +V +SS + +E P  R A 
Sbjct: 180  GTDSDDMLS--------VSFLGKGDKTVRSTRLLERRSKRRKVPESSVLFYENPRNRAAD 231

Query: 832  KHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFDRE 1011
               +LSEG + +DPLRLFL+G ET+QLLT +EE EL AQ+Q+L +LE+VK +LQS+F RE
Sbjct: 232  IRKRLSEGLNSDDPLRLFLAGPETRQLLTFEEESELIAQVQDLIKLEQVKARLQSEFGRE 291

Query: 1012 PTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQDG 1191
            PTL+EWA+AVG+SCR L+SQI SG  SREK+  AN R+VVH+AKQY   G+ +QDLMQ+G
Sbjct: 292  PTLVEWAEAVGLSCRILQSQIQSGTSSREKLICANLRLVVHIAKQYQGRGVGIQDLMQEG 351

Query: 1192 SIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNARE 1371
            S+GLMKS+EKFKPQ  CRF+SYAYWWIRQ                ENV+  L ++  A+ 
Sbjct: 352  SMGLMKSVEKFKPQVGCRFASYAYWWIRQT---------------ENVYTLLGKVLEAKR 396

Query: 1372 QFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADTEV 1548
              +QEG H P+ E+LA RVG+TV +L  LL  TR+PLSMQQPVW+DQ TTFQE+TADT +
Sbjct: 397  SSIQEGNHNPSKEDLATRVGITVEKLNKLLYMTRIPLSMQQPVWADQSTTFQEVTADTRI 456

Query: 1549 EIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKERVR 1728
            EIPD+SV KQ+MR+HVR LL  L+ +ER+I+RLR+GIEDG QKSLS+IG ++G+SKERVR
Sbjct: 457  EIPDVSVAKQMMRQHVRGLLRSLNVRERQIIRLRFGIEDGNQKSLSEIGRMYGLSKERVR 516

Query: 1729 QLENQAMGKLRKCMSSQGLEAYSNLLI 1809
            QLE++A+ KL++C+ SQ LEAY++L++
Sbjct: 517  QLESRALYKLKQCLGSQDLEAYADLIV 543


>gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus guttatus]
          Length = 559

 Score =  540 bits (1390), Expect = e-150
 Identities = 294/570 (51%), Positives = 391/570 (68%), Gaps = 6/570 (1%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFR--SSIPSSAPILHEQATLAVTSTPTTSITRHFPTSVLLQ 291
            ME  R+L+ S P F  +TH R  SS  SS  +LHEQ T A+TS  T S+ RH  TSVL+Q
Sbjct: 1    METVRSLVSSPPQFPLRTHVRNCSSSCSSVLLLHEQVTPALTSLSTPSLARHTTTSVLIQ 60

Query: 292  EQRDEFRPLLQIREDKTSQATLDRRQ---TDNGVSFCEEKKSCQSDQYLKDFERRXXXXX 462
            +QR+E RPLL +++D T Q T DRRQ   T    S  E       DQY  D + +     
Sbjct: 61   DQRNESRPLLSLKDDNTFQQTFDRRQMVTTPASSSSNEGNDKIDPDQYDNDLQLQLLRRP 120

Query: 463  XXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEES 642
                      K E P  + T  S+   A+ +   +   VLALA+EA  A ++AAS+AE++
Sbjct: 121  ELWYLWSSLQKKEHPFPTTTPNSLPSTAENVTGAEANHVLALAREAFSACKEAASIAEDA 180

Query: 643  NLFGADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHETPSWR 822
             L+    D+S      +             VRSKR LER+ KR R  K      E    R
Sbjct: 181  RLY----DNS------SSTRSLVGSPVQRIVRSKRRLERQAKR-RAPKPQLEDQEMNHRR 229

Query: 823  TAAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQF 1002
                H K SEG+DPNDPLRLFL G ET QLL+AKEE +L A+IQEL +L+EV+ +LQ+QF
Sbjct: 230  KLEPHKKSSEGYDPNDPLRLFLWGPETTQLLSAKEEADLIAKIQELMKLQEVRSRLQTQF 289

Query: 1003 DREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLM 1182
             REPTL+EWA AVG+S + L+ Q++ GN SREK+ YANFR+VV++AKQY   GL+LQDL+
Sbjct: 290  SREPTLVEWAAAVGISTQALQFQVNCGNFSREKLIYANFRLVVYIAKQYQGRGLNLQDLL 349

Query: 1183 QDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRN 1362
            Q GS+GLMKS+EKFKP   CRF++YAYWWIRQ+IRK++FQ SRT+RLPENV+  L ++  
Sbjct: 350  QLGSMGLMKSVEKFKPLVGCRFATYAYWWIRQSIRKSLFQHSRTIRLPENVYTLLSKVYE 409

Query: 1363 AREQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITAD 1539
            A++  +++G HQPT E++A   GL+V +L+ LL ++RVPLSMQ+PVW DQDTTFQEITAD
Sbjct: 410  AKKTCIKQGNHQPTKEDIAAAAGLSVEKLDRLLYTSRVPLSMQKPVWMDQDTTFQEITAD 469

Query: 1540 TEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKE 1719
            T VE PD+  +KQ+MR+H RNLLS+L+P+ER+I+RLR+GIEDG+QKSLS IG  FG+SKE
Sbjct: 470  TAVEAPDVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEDGEQKSLSDIGAGFGLSKE 529

Query: 1720 RVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1809
            R+RQ+E++A+ KL++C+SS GL AY+ +L+
Sbjct: 530  RIRQIESRALYKLKQCLSSHGLSAYAEMLV 559


>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Glycine
            max]
          Length = 574

 Score =  529 bits (1362), Expect = e-147
 Identities = 300/577 (51%), Positives = 388/577 (67%), Gaps = 13/577 (2%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFR-SSIPSSAP----ILHEQATLAVTSTPTTSITRHFPTSV 282
            ME  R +  SSP F P+TH   +++P S+     +L EQA+  V S  +    ++FP SV
Sbjct: 1    MEFSRTMFCSSPPFPPRTHHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFPASV 60

Query: 283  LLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXX 459
            LLQEQRDE+RPLL + +EDKTSQA L  RQ D  V   EE  +  +DQ + DF +     
Sbjct: 61   LLQEQRDEYRPLLHMSKEDKTSQAMLSTRQMDT-VMVHEENNTENADQVVLDFRKHLHYW 119

Query: 460  XXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEE 639
                        GE    S T Q +  D D+      C+ ++LAK+A+  S+Q +S+ E+
Sbjct: 120  PHLQNLLASSQTGEISA-SSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSVVED 178

Query: 640  SNLFGADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHETPSW 819
                 AD DDS P    +             VRS RLLERR+K+ +V KS  +  ET   
Sbjct: 179  LKSIKAD-DDSIPFGLASTGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLA 237

Query: 820  RTAAKHSKL------SEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVK 981
            R    H KL      +E  D NDPL  FL G ETKQLLT ++E +L +QIQ+L RLEEVK
Sbjct: 238  RKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLTLEQESQLISQIQDLLRLEEVK 297

Query: 982  RKLQSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWG 1161
             KLQSQF REPT+ EWA+ VG++CR L +Q+ SG+RSREK+  AN RMVVHVAK Y   G
Sbjct: 298  TKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSREKLIQANLRMVVHVAKSYQGRG 357

Query: 1162 LSLQDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFN 1341
            LSLQDL+Q+GS+GLMKS+EKF P    RF +YA+WWIRQAIRKA+F+ SRT+RLPE VF 
Sbjct: 358  LSLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFI 417

Query: 1342 TLRQIRNAREQFVQEGH-QPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTT 1518
             L ++  A++ ++QEG+  PT EELA+RVG+TV +++ LL S R+P+SMQQ VW+DQ+TT
Sbjct: 418  LLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTT 477

Query: 1519 FQEITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGL 1698
            FQEITAD  VE  D+SV KQLMR+HV N+LSIL PKERRI+RLRYG EDG+QKSLS+IG 
Sbjct: 478  FQEITADPTVEATDVSVEKQLMRQHVLNVLSILHPKERRIIRLRYGFEDGEQKSLSEIGD 537

Query: 1699 VFGISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1809
            +FG+SKERVRQLE +A+ KL+KC+  QGL+AY +LL+
Sbjct: 538  IFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 574


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  528 bits (1361), Expect = e-147
 Identities = 299/578 (51%), Positives = 391/578 (67%), Gaps = 14/578 (2%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFR-SSIPSSAP-----ILHEQATLAVTSTPTTSITRHFPTS 279
            ME  R +  SSP F P+TH   S++PSS+      +LHEQA+  V S  +    ++FP S
Sbjct: 1    MEFARTMFCSSPPFPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFPAS 60

Query: 280  VLLQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXX 456
            VLL EQRDE+RPLL + +EDKTSQA L  RQ D  V+  EE  +  +DQ + DF +    
Sbjct: 61   VLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDT-VTVHEENNTENADQVVLDFRKHLHH 119

Query: 457  XXXXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAE 636
                         GE    S T + + +D ++       + ++LAK+A+  S+Q +S+ E
Sbjct: 120  WPNLQYLLTSSQIGEVAA-SSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVVE 178

Query: 637  ESNLFGADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHETPS 816
            +     AD DDS P    +             VRS RLLERR+K+ +V KS  +  ET  
Sbjct: 179  DLKSIKAD-DDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYL 237

Query: 817  WRTAAKHSKL------SEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEV 978
             R      KL      +E  D +DPLRLFL G ETKQLLT ++E +L +QIQ+L RLEEV
Sbjct: 238  ARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEV 297

Query: 979  KRKLQSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRW 1158
            K  LQSQF REPT+ EWA+  G++CR L+SQ+HSGNRSREK+  AN RMVVHVAK Y   
Sbjct: 298  KTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGR 357

Query: 1159 GLSLQDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVF 1338
            GLSLQDL+Q+GS+GLMKS+EKF P    RF +YA+WWIRQAIRKA+F+ SRT+RLPE VF
Sbjct: 358  GLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVF 417

Query: 1339 NTLRQIRNAREQFVQEGH-QPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDT 1515
              L ++  A++ ++QEG+  PT EELA+RVG+TV +++ LL S R+P+SMQQ VW+DQ+T
Sbjct: 418  ILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNT 477

Query: 1516 TFQEITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIG 1695
            TFQEITAD  VE  D++V KQLMRRHV N+LS+L PKERRI+RLRYG EDG+QKSLS+IG
Sbjct: 478  TFQEITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSLSEIG 537

Query: 1696 LVFGISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1809
             +FG+SKERVRQLE +A+ KL+KC+  QGL+AY +LL+
Sbjct: 538  DIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 575


>ref|XP_007144359.1| hypothetical protein PHAVU_007G149600g [Phaseolus vulgaris]
            gi|561017549|gb|ESW16353.1| hypothetical protein
            PHAVU_007G149600g [Phaseolus vulgaris]
          Length = 582

 Score =  525 bits (1352), Expect = e-146
 Identities = 294/576 (51%), Positives = 388/576 (67%), Gaps = 12/576 (2%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRSSIPSSAP----ILHEQATLAVTSTPTTSITRHFPTSVL 285
            ME  R +  SSP F P+TH  ++ P+S+     +L EQA+  V S  +    ++FP SVL
Sbjct: 10   MEFARTMFCSSPPFPPRTHPWNTHPTSSSTSVLMLREQASSTVASWSSNFSAQNFPASVL 69

Query: 286  LQEQRDEFRPLLQI-REDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXX 462
            LQEQRDE+RPLL + +EDKTSQA L+ RQ D      EE  +  +DQ + DF +      
Sbjct: 70   LQEQRDEYRPLLHMSKEDKTSQAILNTRQMDMDTVH-EENNTGNADQIVLDFRKHLHLWP 128

Query: 463  XXXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEES 642
                       GE    S T Q + +D+++      C+ ++LAK+A+  ++Q +S+ E  
Sbjct: 129  RLQNLLNSSQTGEIAA-SSTLQHVSVDSERRTDGVQCNGVSLAKKALSTAKQTSSVVEGL 187

Query: 643  NLFGADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHETPSWR 822
                AD DDS P    +             VRS RLLERR K+ +VSKS     ET   R
Sbjct: 188  KSIKAD-DDSIPFGLASTGLADPSVGRNKTVRSTRLLERRAKQRKVSKSIVKDDETYLTR 246

Query: 823  T------AAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKR 984
                     K  K++E FD ND LR+FL G ETKQLLT ++E EL ++IQ+L +LEE+K 
Sbjct: 247  KDDAQERIRKEKKINEEFDQNDTLRMFLRGPETKQLLTLEQESELISKIQDLLKLEELKT 306

Query: 985  KLQSQFDREPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGL 1164
            +LQSQF REPT+ EWA+  G++CR L SQ+  GNRSREK+  AN RMVVHVAK Y   GL
Sbjct: 307  RLQSQFGREPTMAEWAEGAGLNCRMLHSQLRHGNRSREKLIQANLRMVVHVAKSYQGRGL 366

Query: 1165 SLQDLMQDGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNT 1344
            SLQDL+Q+GS+GLMKS+EKF P    RF +YA+WWIRQAIRKA+F+ SRT+RLPE V+  
Sbjct: 367  SLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVYIQ 426

Query: 1345 LRQIRNAREQFVQEGH-QPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTF 1521
            L +I  A++ ++QEG+  PT EELA+RVG+TV +++ LL + R+P+SMQQ VW+DQDTTF
Sbjct: 427  LGKIMEAKKLYIQEGNLHPTKEELARRVGITVEKIDKLLYAARIPISMQQTVWADQDTTF 486

Query: 1522 QEITADTEVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLV 1701
            QEITAD  VE  DLSV KQLMRRHV N+L+IL PKER+I+RLRYG EDG+Q+SLS+IG +
Sbjct: 487  QEITADPTVEATDLSVEKQLMRRHVLNVLTILRPKERKIIRLRYGFEDGEQRSLSEIGDI 546

Query: 1702 FGISKERVRQLENQAMGKLRKCMSSQGLEAYSNLLI 1809
            FG+SKERVRQLE +A+ KL+KC+  QGL+AY +LL+
Sbjct: 547  FGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 582


>ref|XP_006410876.1| hypothetical protein EUTSA_v10016472mg [Eutrema salsugineum]
            gi|312282671|dbj|BAJ34201.1| unnamed protein product
            [Thellungiella halophila] gi|557112045|gb|ESQ52329.1|
            hypothetical protein EUTSA_v10016472mg [Eutrema
            salsugineum]
          Length = 547

 Score =  522 bits (1345), Expect = e-145
 Identities = 294/569 (51%), Positives = 390/569 (68%), Gaps = 5/569 (0%)
 Frame = +1

Query: 118  MEVGRNLLYSSPLFLPKTHFRS--SIPSSAPILHEQ-ATLAVTSTPTTSITRHFPTSVLL 288
            ME  RNL+ SSP F  KTH +S  S PSS  +LHEQ AT  V S   TS++RHFP SVL 
Sbjct: 1    MEATRNLVSSSPSFQTKTHLKSGFSSPSSVVMLHEQTATPVVNSRHLTSLSRHFPASVLS 60

Query: 289  QEQRDEFRPLLQ-IREDKTSQATLDRRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXX 465
            QE R+E +PL   +RED+TSQ TL+RRQ D  VS  E++K          FE++      
Sbjct: 61   QELREESKPLSHALREDRTSQLTLERRQFDELVSSREDEK----------FEQQLLHSAG 110

Query: 466  XXXXXXXXXKGEKPLLSMTTQSIELDADKIVFMKPCDVLALAKEAVLASRQAASLAEESN 645
                       EK L ++ + S + D         CD++ALA++A+ AS+QAA L E S 
Sbjct: 111  LWNLLISPLTTEKQLPAVVSPSADADL--------CDLVALAQKALSASKQAALLVENSE 162

Query: 646  LFGADFDDSFPRMGHTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHETPSWRT 825
               AD  D+ PR   +             VRSKR LERR K  R  KS+ +  E    + 
Sbjct: 163  ---ADPPDN-PRDSLSTSSSMSLPEKGTIVRSKRQLERRAKNRRAPKSNNMDSEGYVPQK 218

Query: 826  AAKHSKLSEGFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFD 1005
                 K+ +GFD +D L+LFL G ETKQLLTAKEE EL A IQ L +LE+VK KL+SQ  
Sbjct: 219  INAKKKMKQGFDTDDALQLFLWGPETKQLLTAKEEAELIAHIQHLIKLEKVKTKLESQNG 278

Query: 1006 REPTLIEWAKAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQ 1185
             EPT+ EWA+A+G+S   LKS+IH G  SREK+  AN R+VVH+AKQY   GL+ QDL+Q
Sbjct: 279  CEPTIGEWAEAMGLSSPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 338

Query: 1186 DGSIGLMKSIEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNA 1365
            +GS+GLMKS+EKFKPQ  CRF++YAYWWIRQ+IRK+IFQ SRT+RLPENV+  L ++  A
Sbjct: 339  EGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEA 398

Query: 1366 REQFVQEG-HQPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADT 1542
            R+  +Q+G ++P+ E+LA  VG++  +L+ LL +TR PLSMQQP+WSDQDTTFQE+T D+
Sbjct: 399  RKTCIQDGNYRPSKEQLASHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEVTPDS 458

Query: 1543 EVEIPDLSVTKQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKER 1722
             +E P +SV KQLMR HVRNLL++LSPKE+RI++LR+GI+ G+Q+SLS+IG ++G+SKER
Sbjct: 459  GIETPSMSVGKQLMRNHVRNLLNVLSPKEKRIIKLRFGIDGGKQRSLSEIGEIYGLSKER 518

Query: 1723 VRQLENQAMGKLRKCMSSQGLEAYSNLLI 1809
            VRQLE++A+ +L++ MSS GL AY++LL+
Sbjct: 519  VRQLESRALYRLKQNMSSHGLNAYADLLV 547


>ref|XP_006827418.1| hypothetical protein AMTR_s00009p00072720 [Amborella trichopoda]
            gi|548832038|gb|ERM94834.1| hypothetical protein
            AMTR_s00009p00072720 [Amborella trichopoda]
          Length = 573

 Score =  520 bits (1339), Expect = e-144
 Identities = 289/558 (51%), Positives = 379/558 (67%), Gaps = 19/558 (3%)
 Frame = +1

Query: 190  PSSAPILH--EQATLAVTSTPTTSITRHFPTSVLLQEQRDEFR-PLLQIREDKTSQATLD 360
            P+S  IL   +QA L  T   TTS  RHFP SV+L EQRD+ R P    +EDK  Q  +D
Sbjct: 18   PNSPGILTSPDQAPLTATMLSTTSAVRHFPASVVLHEQRDDLRSPTSSPKEDKAYQEVMD 77

Query: 361  RRQTDNGVSFCEEKKSCQSDQYLKDFERRXXXXXXXXXXXXXXXKGEKPLLSMTTQSIEL 540
            R +T+   S   E K+ + DQYLKDFER+                  K LLS+  Q   L
Sbjct: 78   RARTEVYASIGAETKNFEIDQYLKDFERQLLYWPALWYLSPSRIL-PKSLLSLPFQCKPL 136

Query: 541  DAD-------------KIVFMKPCDVLALAKEAVLASRQAASLAEESNLFGADFD-DSFP 678
            + D                 + P DVL LAK AV+AS+ AA+L E S+L   + D D  P
Sbjct: 137  ETDIESEIKESRKKQTNCSSLNPMDVLVLAKRAVMASKAAAALVEHSDLTVGNPDGDISP 196

Query: 679  RMG-HTXXXXXXXXXXXXKVRSKRLLERRTKRHRVSKSSAVVHETPSWRTAAKHSKL-SE 852
              G                +RSKR LER+ KR RV K   +   + ++    K  K+ ++
Sbjct: 197  CSGLKEICIQVPDEDMRTTIRSKRHLERQIKRRRVPKK--LKDFSANFEIGKKPEKVKNK 254

Query: 853  GFDPNDPLRLFLSGSETKQLLTAKEELELFAQIQELTRLEEVKRKLQSQFDREPTLIEWA 1032
             FDPNDPLR FL G  TKQLLT KEE ELF +IQ+L R+EEVK++L+ QF  EPT++EWA
Sbjct: 255  SFDPNDPLRFFLWGPITKQLLTEKEESELFVKIQDLMRVEEVKKELEMQFGCEPTVVEWA 314

Query: 1033 KAVGMSCRTLKSQIHSGNRSREKITYANFRMVVHVAKQYYRWGLSLQDLMQDGSIGLMKS 1212
            +A GMS  +L+S IH G +SREK+ YANFR+VVHVAK Y   GLS+QDL+Q+GS+GLMKS
Sbjct: 315  RAAGMSYGSLQSCIHFGRKSREKMIYANFRLVVHVAKNYQGRGLSIQDLLQEGSVGLMKS 374

Query: 1213 IEKFKPQQDCRFSSYAYWWIRQAIRKAIFQKSRTVRLPENVFNTLRQIRNAREQFVQEGH 1392
            +EKFKP+  CRFS+YAYWWIRQAIRK++FQ SRT+RLPENV+  L +I+NAR  + QEGH
Sbjct: 375  LEKFKPKTGCRFSTYAYWWIRQAIRKSLFQNSRTIRLPENVYGLLTKIKNARRLYFQEGH 434

Query: 1393 QPTNEELAKRVGLTVGRLETLLVSTRVPLSMQQPVWSDQDTTFQEITADTEVEIPDLSVT 1572
            +PTNEELA+RVG+TV +LET+ V +++P+S+QQPVWSDQD T QEITAD +VE P+ +V 
Sbjct: 435  RPTNEELAQRVGITVDKLETVRVFSKLPVSIQQPVWSDQDVTIQEITADPKVETPEKNVA 494

Query: 1573 KQLMRRHVRNLLSILSPKERRIVRLRYGIEDGQQKSLSQIGLVFGISKERVRQLENQAMG 1752
            KQLMRRHVRNLLS+L+P+ER+++ LR+GI+  ++KSLS+IG +F +SKER+RQ+E++A+ 
Sbjct: 495  KQLMRRHVRNLLSLLNPRERQVINLRFGIQGRERKSLSEIGGMFNVSKERIRQVESKALE 554

Query: 1753 KLRKCMSSQGLEAYSNLL 1806
            KL+ C  +QGLE Y+ LL
Sbjct: 555  KLKNCTQTQGLEVYAELL 572