BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia24_contig00001017
         (1352 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              278   5e-72
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   278   5e-72
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   263   2e-67
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   263   2e-67
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...   255   4e-65
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   251   4e-64
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...   251   5e-64
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...   247   1e-62
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put...   246   2e-62
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun...   245   3e-62
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub...   240   1e-60
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...   238   6e-60
ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phas...   238   6e-60
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub...   233   1e-58
gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus...   226   2e-56
emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]   223   2e-55
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub...   219   3e-54
ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|3555218...   218   6e-54
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...   218   6e-54
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps...   217   1e-53

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  278 bits (710), Expect = 5e-72
 Identities = 174/406 (42%), Positives = 215/406 (52%), Gaps = 73/406 (17%)
 Frame = -3

Query: 1329 STDTWGT-LAEADKTGQNKNDGKSQWPSQSSDPSADTWGTLAEADKTGQNKNDG-KSQWG 1156
            ++  WG  + EADKTG NKNDGK   P       +  W      +KT Q+   G  S  G
Sbjct: 1469 ASSAWGKKIDEADKTGWNKNDGK---PQMDKLRESYDWDCKVAQEKTTQSTYGGISSTTG 1525

Query: 1155 QWKNSAKPSE-----ESP-RYGGWNIN--------------------------------E 1090
             WK +    E     ESP     W+ N                                E
Sbjct: 1526 DWKKNELQMEVVQHDESPVNEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSPSE 1585

Query: 1089 SQKQPQV-----------EEPGETWGRHGTEEADVTGGNQNDGNPQWGQWRESHTK---- 955
             Q+ P +           E+  +    HG +     G N  +   QW Q R S  K    
Sbjct: 1586 QQRDPAIKSWSSSHNVMKEQSNQPASTHGWDSPGAKGWNDVEEQSQWNQ-RGSAVKNDQS 1644

Query: 954  -------PSEES---PSYGGWNIRKS----EKRPCDAWGQRDGE----EGTGGWNKSEGK 829
                   PS E    PS  GW    +    E      WGQ  G+    EG+ GW      
Sbjct: 1645 ESSHGWGPSNEQNQLPSSQGWGSPNAGAGHESETQSQWGQPSGKKSRPEGSRGWG----- 1699

Query: 828  SQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPIL 649
               SN  +WK KK R     G  +D  D+SA GIFTATRQR+D FTSEEQ+IL DVEPI+
Sbjct: 1700 ---SNNTEWKNKKNRPNKPQGPLND--DYSAGGIFTATRQRVDIFTSEEQDILLDVEPIM 1754

Query: 648  QSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTR 469
            QSI+RIMHQ+ YNDGDPL+ADDQSY+LD VFN HPDK  KMG+G++YVMV++HSSF ++R
Sbjct: 1755 QSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESR 1814

Query: 468  CFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPRSG 331
            CFY+VSTDGH+EDFSYRKC+ENFIK+KYP  AE+FI KYFR+PR+G
Sbjct: 1815 CFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAG 1860


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  278 bits (710), Expect = 5e-72
 Identities = 174/406 (42%), Positives = 215/406 (52%), Gaps = 73/406 (17%)
 Frame = -3

Query: 1329 STDTWGT-LAEADKTGQNKNDGKSQWPSQSSDPSADTWGTLAEADKTGQNKNDG-KSQWG 1156
            ++  WG  + EADKTG NKNDGK   P       +  W      +KT Q+   G  S  G
Sbjct: 1409 ASSAWGKKIDEADKTGWNKNDGK---PQMDKLRESYDWDCKVAQEKTTQSTYGGISSTTG 1465

Query: 1155 QWKNSAKPSE-----ESP-RYGGWNIN--------------------------------E 1090
             WK +    E     ESP     W+ N                                E
Sbjct: 1466 DWKKNELQMEVVQHDESPVNEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSPSE 1525

Query: 1089 SQKQPQV-----------EEPGETWGRHGTEEADVTGGNQNDGNPQWGQWRESHTK---- 955
             Q+ P +           E+  +    HG +     G N  +   QW Q R S  K    
Sbjct: 1526 QQRDPAIKSWSSSHNVMKEQSNQPASTHGWDSPGAKGWNDVEEQSQWNQ-RGSAVKNDQS 1584

Query: 954  -------PSEES---PSYGGWNIRKS----EKRPCDAWGQRDGE----EGTGGWNKSEGK 829
                   PS E    PS  GW    +    E      WGQ  G+    EG+ GW      
Sbjct: 1585 ESSHGWGPSNEQNQLPSSQGWGSPNAGAGHESETQSQWGQPSGKKSRPEGSRGWG----- 1639

Query: 828  SQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPIL 649
               SN  +WK KK R     G  +D  D+SA GIFTATRQR+D FTSEEQ+IL DVEPI+
Sbjct: 1640 ---SNNTEWKNKKNRPNKPQGPLND--DYSAGGIFTATRQRVDIFTSEEQDILLDVEPIM 1694

Query: 648  QSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTR 469
            QSI+RIMHQ+ YNDGDPL+ADDQSY+LD VFN HPDK  KMG+G++YVMV++HSSF ++R
Sbjct: 1695 QSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESR 1754

Query: 468  CFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPRSG 331
            CFY+VSTDGH+EDFSYRKC+ENFIK+KYP  AE+FI KYFR+PR+G
Sbjct: 1755 CFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAG 1800


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  263 bits (671), Expect = 2e-67
 Identities = 142/340 (41%), Positives = 200/340 (58%), Gaps = 25/340 (7%)
 Frame = -3

Query: 1281 NKNDGKSQWPSQSSDPSADTWGTLAEADKTGQNKNDGKSQWGQWKNSAKPSEESPRYGGW 1102
            N +  + + P  S     D WG     D    +  + +S    W +  + +E S  +G  
Sbjct: 1588 NHSWDRQKSPEASQGFGNDAWGQQKSRDVIKPSLANNESNLSGWGSQIESNEGSD-HGFD 1646

Query: 1101 NINESQKQPQV------EEPGETWGRHGTEEADVTGGNQNDGNPQWGQWRESHTKPSEES 940
             +   QK          E+  + W +  + EA  + G+QND    WGQ + +  + S ES
Sbjct: 1647 QVTNEQKSSDTRGWDSQEKTDKPWDKQKSLEASQSWGSQNDSLGSWGQPQRASEECSRES 1706

Query: 939  PSYG--------------GWNIRKSEKRPCDAWGQ-RDGEEGTG--GWNKSE--GKSQSS 817
                              GW  +KS +     WG  ++  E T   GW+K     K    
Sbjct: 1707 QDDSSTQFSQLKPPETSLGWEQQKSPE-VSHGWGSHKESSEQTSSHGWDKKNQGSKGWGG 1765

Query: 816  NAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIK 637
            NAG+WK +K R   SPG  +D  D +   ++TA+ QRLD FTSEEQ+IL+D+EPI+QSI+
Sbjct: 1766 NAGEWKNRKNRPPKSPGMSND--DANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIR 1823

Query: 636  RIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYI 457
            ++MHQS YNDGDPL+A+DQS+VL  VFN+HPDK  KMG+G+++ MV++HSSFQ++RCFY+
Sbjct: 1824 KVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYV 1883

Query: 456  VSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPR 337
            V+TDGH+EDFSYRKC++NFIK KYP +AE F+ KYFRKPR
Sbjct: 1884 VTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPR 1923


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  263 bits (671), Expect = 2e-67
 Identities = 142/340 (41%), Positives = 200/340 (58%), Gaps = 25/340 (7%)
 Frame = -3

Query: 1281 NKNDGKSQWPSQSSDPSADTWGTLAEADKTGQNKNDGKSQWGQWKNSAKPSEESPRYGGW 1102
            N +  + + P  S     D WG     D    +  + +S    W +  + +E S  +G  
Sbjct: 1648 NHSWDRQKSPEASQGFGNDAWGQQKSRDVIKPSLANNESNLSGWGSQIESNEGSD-HGFD 1706

Query: 1101 NINESQKQPQV------EEPGETWGRHGTEEADVTGGNQNDGNPQWGQWRESHTKPSEES 940
             +   QK          E+  + W +  + EA  + G+QND    WGQ + +  + S ES
Sbjct: 1707 QVTNEQKSSDTRGWDSQEKTDKPWDKQKSLEASQSWGSQNDSLGSWGQPQRASEECSRES 1766

Query: 939  PSYG--------------GWNIRKSEKRPCDAWGQ-RDGEEGTG--GWNKSE--GKSQSS 817
                              GW  +KS +     WG  ++  E T   GW+K     K    
Sbjct: 1767 QDDSSTQFSQLKPPETSLGWEQQKSPE-VSHGWGSNKESSEQTSSHGWDKKNQGSKGWGG 1825

Query: 816  NAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIK 637
            NAG+WK +K R   SPG  +D  D +   ++TA+ QRLD FTSEEQ+IL+D+EPI+QSI+
Sbjct: 1826 NAGEWKNRKNRPPKSPGMSND--DANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIR 1883

Query: 636  RIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYI 457
            ++MHQS YNDGDPL+A+DQS+VL  VFN+HPDK  KMG+G+++ MV++HSSFQ++RCFY+
Sbjct: 1884 KVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYV 1943

Query: 456  VSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPR 337
            V+TDGH+EDFSYRKC++NFIK KYP +AE F+ KYFRKPR
Sbjct: 1944 VTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPR 1983


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score =  255 bits (651), Expect = 4e-65
 Identities = 147/360 (40%), Positives = 211/360 (58%), Gaps = 21/360 (5%)
 Frame = -3

Query: 1347 SQSSDPSTD--TWGTLAEADKT-GQNKNDGKSQWPSQSSDPSADTWGTLA--EADKTGQN 1183
            +Q S  S+D   W   A A  + G+N ++  S W +++S      W T A  + D  G  
Sbjct: 1515 AQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKAS------WNTKALDKLDDVGSA 1568

Query: 1182 KNDGKSQWGQ--------WKNSAKPSEESP----RYGGWNINESQKQPQVEEPGETWGRH 1039
              +  S WG         W++S+KPS        + GGWN+ +++          +WG+ 
Sbjct: 1569 VENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDD-----SSWGKQ 1623

Query: 1038 GTEEADVTGGNQNDGNPQWGQWRESHTKPSEESP-SYGGWNIRKS---EKRPCDAWGQRD 871
                  +T   +   +  WG  ++ HT+     P S   W++  +    +     WGQ  
Sbjct: 1624 -----KLTENAKGTDDSSWG--KQKHTENESSQPASSNAWDLPDATGGSETEMQVWGQSR 1676

Query: 870  GEEGTGGWNKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFT 691
             E     + K+ G + SS  G+WK KK R   SPG  +D  D + + ++T TRQRLD FT
Sbjct: 1677 KEP----FKKNRGWASSS--GEWKGKKNRPPRSPGVVND--DSTVNAMYTVTRQRLDMFT 1728

Query: 690  SEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVN 511
            SEEQ+ILSDVEPI++SI+RIMHQS YNDGD L+ADD+S++ D+VFNYHPDK  KMG+G++
Sbjct: 1729 SEEQDILSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGID 1788

Query: 510  YVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPRSG 331
            +  V+KH SFQD+RC ++VSTDG ++DFSYRKC+E+FI+ KYP   + FI KYFR+PRSG
Sbjct: 1789 HFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPEFVDEFIGKYFRRPRSG 1848


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  251 bits (642), Expect = 4e-64
 Identities = 146/360 (40%), Positives = 210/360 (58%), Gaps = 21/360 (5%)
 Frame = -3

Query: 1347 SQSSDPSTD--TWGTLAEADKT-GQNKNDGKSQWPSQSSDPSADTWGTLA--EADKTGQN 1183
            +Q S  S+D   W   A A  + G+N ++  S W +++S      W T A  + D  G  
Sbjct: 1513 AQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKAS------WKTKALDKLDDVGSA 1566

Query: 1182 KNDGKSQWGQ--------WKNSAKPSEESP----RYGGWNINESQKQPQVEEPGETWGRH 1039
              +  S WG         W++S+KPS        + GGWN+ +++           WG+ 
Sbjct: 1567 VENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDD-----SCWGKQ 1621

Query: 1038 GTEEADVTGGNQNDGNPQWGQWRESHTKPSEESP-SYGGWNIRKS---EKRPCDAWGQRD 871
                  +T   +   +  WG  ++ HT+     P S   W++  +    +     WGQ  
Sbjct: 1622 -----KLTENAKGTDDSSWG--KQKHTENESPQPASSNAWDLPDATGGSETEMQVWGQSR 1674

Query: 870  GEEGTGGWNKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFT 691
             E     + K+ G + SS  G+WK KK R   SPG  +D  D + + ++T TRQRLD FT
Sbjct: 1675 KEP----FKKNRGWASSS--GEWKGKKNRPPRSPGVVND--DSTVNAMYTVTRQRLDMFT 1726

Query: 690  SEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVN 511
            SEEQ+ILS VEPI++SI+RIMHQS YNDGD L+ADD+S++ D+VFNYHPDK  KMG+G++
Sbjct: 1727 SEEQDILSHVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGID 1786

Query: 510  YVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPRSG 331
            +  V+KH SFQD+RC ++VSTDG ++DFSYRKC+E+FI+ KYP + + FI KYFR+PRSG
Sbjct: 1787 HFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLVDEFIGKYFRRPRSG 1846


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score =  251 bits (641), Expect = 5e-64
 Identities = 150/339 (44%), Positives = 194/339 (57%), Gaps = 16/339 (4%)
 Frame = -3

Query: 1287 GQNKNDGKSQWPSQSSDPSADTWGTLAEADKTGQNKNDGKSQ-WGQWKNSAKPSEE--SP 1117
            GQ K  G   W ++ +   ADT      A   G+ K+   SQ WG  K S K   E   P
Sbjct: 1592 GQGKESGG--WGNKVTSNQADT------ASGWGKPKSSENSQGWGLSKESGKEVHEWGVP 1643

Query: 1116 RYGGWN---INESQKQPQVEEPGETWGRHGTEEADVTGGNQNDGNPQWGQWRESHTKPSE 946
               G N    N + +   + E G+  G      ++  G     G P+     E    P E
Sbjct: 1644 NSAGGNGSETNNNNENQSLVEQGKESGWDNKASSNQEGTASGWGKPKSPALSEGWGSPRE 1703

Query: 945  ESPSYGGWNIRKSE----KRPCDAWGQRDGE------EGTGGWNKSEGKSQSSNAGDWKI 796
               +  GW +  S           WGQ+  E      EG+ GW         SN GDWK 
Sbjct: 1704 PVKAVHGWGVPNSGGGNGSGRDQQWGQQSREFKKDRFEGSRGWG--------SNNGDWKN 1755

Query: 795  KKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSR 616
            K+ R    P K     D +ASGIFT TRQRLD FTS+EQ+ILSD+EP++ SI+RIMHQ+ 
Sbjct: 1756 KRNR----PSK--PHEDLNASGIFTTTRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQTG 1809

Query: 615  YNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHR 436
            YNDGDPL+ADDQSYVLD+VF+YHPDK  KMG+G+++V V++HS+FQ++RCFYIVSTDG +
Sbjct: 1810 YNDGDPLSADDQSYVLDNVFHYHPDKAVKMGAGIDHVTVSRHSNFQESRCFYIVSTDGCK 1869

Query: 435  EDFSYRKCMENFIKDKYPGMAESFIKKYFRKPRSGNPTP 319
            +DFSYRKC+ENFIK KYP +A+ FI KYF +  +   TP
Sbjct: 1870 QDFSYRKCLENFIKGKYPDLADEFIAKYFARRGNRQRTP 1908


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score =  247 bits (630), Expect = 1e-62
 Identities = 141/332 (42%), Positives = 192/332 (57%), Gaps = 12/332 (3%)
 Frame = -3

Query: 1284 QNKNDGKSQ--WPSQSS-DPSADTWGTLAEADKT----GQNKNDGKSQ--WGQWKNSAKP 1132
            Q   D  SQ  W  Q S D S  TW     A+ +    GQ K+   SQ  WG  K ++  
Sbjct: 1660 QKSADASSQGAWERQKSPDTSKGTWEQPKSAEMSHGAWGQQKSPDVSQGVWGLEKPASTN 1719

Query: 1131 SEESPRYGGWNINESQKQPQVEEPGETWGRHGTEE-ADVTGGNQNDGNPQWGQWRESHTK 955
            S+     G W     QK P++  P   WG+  + + +  T G Q       G W +    
Sbjct: 1720 SQ-----GSWG---QQKSPEI--PQGNWGQQTSPDISQGTWGQQKSPEMSQGSWGQQKPS 1769

Query: 954  PSEESPSYGGWNIRKSEKRPCDAWGQRDGEEGTGGWNK--SEGKSQSSNAGDWKIKKGRA 781
             + +  +   W+   S+        Q+ G  G     K    G+S   NAG+WK K  R 
Sbjct: 1770 DTSQPATVNQWD---SQSEAAVERHQQWGHNGDSNKRKRFEGGRSWGPNAGEWKGKNSRP 1826

Query: 780  AMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGD 601
            A SPG  +D  D S + I+TATRQRLD FTSEEQ++LS +EP + SI+RIMHQS YNDGD
Sbjct: 1827 AKSPGMVND--DSSVAAIYTATRQRLDIFTSEEQDVLSHIEPTMLSIRRIMHQSGYNDGD 1884

Query: 600  PLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSY 421
             L+A+D S++LD VFN+HP+K  KMGSG++Y  V++H SFQ++RC +++STDG +EDFSY
Sbjct: 1885 QLSAEDHSFILDKVFNFHPEKEAKMGSGIDYFTVDRHGSFQESRCLFVISTDGRKEDFSY 1944

Query: 420  RKCMENFIKDKYPGMAESFIKKYFRKPRSGNP 325
            RKC++N IK+KYP +AE+F  KYF +PR  NP
Sbjct: 1945 RKCLQNMIKEKYPELAEAFNDKYFSRPRPRNP 1976



 Score = 63.2 bits (152), Expect = 3e-07
 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 10/204 (4%)
 Frame = -3

Query: 1341 SSDPSTDTWGT--------LAEADKTGQNKNDGKSQWPSQSSDPSADTWGTLAEADKTGQ 1186
            +++ +T  WG          AE  +  + + D  S W +++++ +  TW T  E++    
Sbjct: 1533 ATEDATTAWGRNNEKKHVLTAEVLEDSKAREDATSGWGTENAENAQSTWRTSTESENGWS 1592

Query: 1185 NKNDGKSQWGQWKNSAKPSEESPRYGGWN-INESQKQPQVEEPGETWGRHGTEEADVTGG 1009
             +  G S+       ++ + E+P+  GWN  +   ++PQ E  G  WG  G+E+      
Sbjct: 1593 GR--GGSKVESTDVQSQKAVENPK--GWNDFSAGVRKPQTENAGSGWGMKGSEKKGDIEL 1648

Query: 1008 NQNDGNPQWGQWRESHTKPSEESPSYGGWNIRKSEKRPCDAWGQ-RDGEEGTGGWNKSEG 832
             Q++        R S  + S ++ S G W  +KS       W Q +  E   G W +   
Sbjct: 1649 EQDEST------RHSWKQKSADASSQGAWERQKSPDTSKGTWEQPKSAEMSHGAWGQQ-- 1700

Query: 831  KSQSSNAGDWKIKKGRAAMSPGKF 760
            KS   + G W ++K  +  S G +
Sbjct: 1701 KSPDVSQGVWGLEKPASTNSQGSW 1724


>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|590569189|ref|XP_007011000.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score =  246 bits (627), Expect = 2e-62
 Identities = 139/319 (43%), Positives = 185/319 (57%), Gaps = 39/319 (12%)
 Frame = -3

Query: 1170 KSQWGQW-KNSAKPSEESPRYGGWNINESQK---------------------QPQVEEPG 1057
            +++WG W K  +K  + SP+  G  +NE  K                     +    + G
Sbjct: 1456 ETEWGDWGKGKSKTQDVSPKVDGTCVNEQTKLSDWGLKKNDTQDVSMEEKTFKSNGADTG 1515

Query: 1056 ETWGRHGTEEADVTGGNQNDGNPQ--WGQWRESHTKPSEESPSYGGWNIRKSEKRPCDAW 883
             +WG  G E       + ND  P   WG      TK  ++S    GW  +KS +     W
Sbjct: 1516 TSWGTMGKESEKP---DANDALPWSGWGTQDVIPTKTLDDSSKSSGWEQQKSPECS-QGW 1571

Query: 882  GQRDGEE---GTGGWNKSEG--KSQSSNAGDWKIKKG--RAAMSPGKFDD--------RN 748
            G  D       + GW+   G   +QS     W   +G  R A    K +          +
Sbjct: 1572 GSLDESNQPASSNGWDTPNGLGSTQSEKQHQWGQSRGSRRWASDASKKNHPVKSARVMND 1631

Query: 747  DWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVL 568
            D S + ++TATRQRLD FTSEEQ+ILSDVEP++QSI++IMHQS YNDGDPL+A DQS++L
Sbjct: 1632 DSSMAAMYTATRQRLDMFTSEEQDILSDVEPLMQSIRKIMHQSGYNDGDPLSALDQSFIL 1691

Query: 567  DHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDK 388
            ++VF +HPDK  KMG+GV+YVMV+KHS+F D+RCFY+VSTDG ++DFSYRKC++NFIK K
Sbjct: 1692 ENVFTHHPDKAIKMGAGVDYVMVSKHSNFPDSRCFYVVSTDGRKQDFSYRKCLDNFIKGK 1751

Query: 387  YPGMAESFIKKYFRKPRSG 331
            YP MA+ FI KYFRKPR G
Sbjct: 1752 YPDMADVFIAKYFRKPRFG 1770


>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
            gi|462415343|gb|EMJ20080.1| hypothetical protein
            PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score =  245 bits (626), Expect = 3e-62
 Identities = 139/338 (41%), Positives = 192/338 (56%), Gaps = 15/338 (4%)
 Frame = -3

Query: 1290 TGQNKNDGKSQWPSQ-SSDPSADTWGTLAEADKTGQNKNDGKSQWGQWKNSAKPSEESPR 1114
            T   + D  S W    + + +  TWGT   ++     +  G         S K S     
Sbjct: 1507 TNTAREDAASAWGKHPAKENTTSTWGTTTASENDWCGRGVGHDDSASL--SGKKSSVLNT 1564

Query: 1113 YGGWNINESQ--------KQPQVEEPGETWGRHGTEEADVTGGNQNDGNPQWGQWRESHT 958
               W  N ++        K P  E    TWG     E D  G       P   Q     T
Sbjct: 1565 SSVWATNTAREDATSAWGKNPAKENTTSTWGTTTASENDWCGREAGKVEPVDLQ----PT 1620

Query: 957  KPSEESPSYGGWNIRKSEKRPCDA---WGQRDGEEGTGGWNKSEG-KSQSSNAGDWKIKK 790
            KP ++S S  GW+    +    +    WGQ  G++     N+ EG ++  S+ G+WK  K
Sbjct: 1621 KPQDDSASLSGWDSPTGDGNSGERNHQWGQHRGDQTKK--NRFEGARNWVSSPGEWK-NK 1677

Query: 789  GRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYN 610
             R   SPG  +D +   A  ++T TRQRLD FTSEEQ++LS++EP+++S++RIMHQS YN
Sbjct: 1678 NRPPKSPGMVNDNSTMGA--LYTVTRQRLDMFTSEEQDVLSNIEPVMRSLRRIMHQSGYN 1735

Query: 609  DGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHRED 430
            DGDPL+ DDQS+VLD+VFNYHPDK  KMG G++++ VN+H SFQD+RCF++VSTDG  ED
Sbjct: 1736 DGDPLSGDDQSFVLDNVFNYHPDKAAKMGCGIDHLTVNRHGSFQDSRCFFVVSTDGRTED 1795

Query: 429  FSYRKCMENFIKDKYPGMAESFIKKYF--RKPRSGNPT 322
            FSYRKC++N+I++K+P +AE+FI KYF  R  R  NPT
Sbjct: 1796 FSYRKCLDNYIREKFPDLAETFIGKYFSRRGNRERNPT 1833


>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2082

 Score =  240 bits (612), Expect = 1e-60
 Identities = 135/355 (38%), Positives = 187/355 (52%), Gaps = 32/355 (9%)
 Frame = -3

Query: 1302 EADKTGQNKNDGKSQWPSQSS----DPSADTWGTLAEADKTGQNKNDGKSQWG------- 1156
            +A+   Q K++  S W  +      D   D+WG+    DK  Q  N G   WG       
Sbjct: 1688 DANAADQTKSNEWSDWGKKKEVTQEDNVQDSWGSGKRKDKVTQEDNSGSGGWGANRTDLA 1747

Query: 1155 -----QWKNSAKPSEESPRYGG-------WNINESQKQPQVEEPGETWGRHGTEEADVTG 1012
                 +W +  K   E P  G        W   + +   Q E  G  W R+  E  D  G
Sbjct: 1748 KSKSSEWSSWGKNKSEIPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNKAETID--G 1805

Query: 1011 GNQNDGNPQWGQWRESHTKPSEESPSYGGWNIRKSEKRPCDAWGQRDGEEGTGGWNK--S 838
            G++    PQ   W   + K   +  +      + SE +  D+  Q +    + GW    +
Sbjct: 1806 GSEK---PQEDAWNSGNWKAESKVGNASWGKPKSSESQAWDSHNQSNQNSSSQGWESHIA 1862

Query: 837  EGKSQSSNAGDW------KIKKGRAAMSPGKFDDRNDW-SASGIFTATRQRLDQFTSEEQ 679
               S+S     W        KK R   S G+  +  DW + +    A  QRLD ++S EQ
Sbjct: 1863 SANSESEKGFQWGKQGRDSFKKNRFEGSQGRGSNAGDWKNRNRPPRAPGQRLDIYSSGEQ 1922

Query: 678  NILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMV 499
            ++L D+EPI+QSI+RIM Q  YNDGDPL A+DQ +VL++VF +HPDK TKMG+G++YVMV
Sbjct: 1923 DVLKDIEPIMQSIRRIMQQQGYNDGDPLAAEDQLFVLENVFEHHPDKETKMGTGIDYVMV 1982

Query: 498  NKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPRS 334
            NKHSSFQ++RCFY+V  DG  +DFSYRKC+ N+I  KYP +AESF+ KYFRKPR+
Sbjct: 1983 NKHSSFQESRCFYVVCKDGESKDFSYRKCLANYISKKYPDLAESFLGKYFRKPRA 2037


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score =  238 bits (606), Expect = 6e-60
 Identities = 144/357 (40%), Positives = 204/357 (57%), Gaps = 24/357 (6%)
 Frame = -3

Query: 1329 STDTWGTLAEADKTGQNKNDGKSQWPSQSSDPSADTWGTLAEADKTGQNKNDGKSQWGQW 1150
            STD W T ++  KT   KN   S W  + S+   D   T ++ D          S WG  
Sbjct: 1677 STD-WNTTSDRTKT-MTKNTW-SGWHGEKSEKE-DILSTKSQQDLPRN------SDWGAV 1726

Query: 1149 KNSAKPSEESPRYGGWNINESQKQP-QVEEPGETWGRHGTEEADVTGGNQNDGNPQWGQW 973
             N    +E +  +    +++ Q  P QV EP + W    T +  V+G   ++        
Sbjct: 1727 SNRENNAERAYEF----VSKDQPLPDQVSEPCD-WDNKLTPQKAVSGWLSSNDEGWTKDA 1781

Query: 972  RESHTKPSEESPS-YGGWNIRKS-------EKRPCDAWGQRDGEEG-----------TGG 850
              S  K   +SP  Y  W  R S       E    ++W  R G+ G           +G 
Sbjct: 1782 NSSERKEPTDSPVVYNSWEKRTSSEISQNVESASFNSWLPRAGDGGEVEKPNEWVKKSGS 1841

Query: 849  WNKSEGKSQS---SNAGDWKIKKGRAAMSPGKFDD-RNDWSASGIFTATRQRLDQFTSEE 682
            + K+ G++     S++GDWKIKK      PGKF    ND ++  +FT TRQRLD FTSEE
Sbjct: 1842 FKKNHGETSGGWGSDSGDWKIKKNH----PGKFPRMNNDNTSVRLFTETRQRLDLFTSEE 1897

Query: 681  QNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVM 502
            Q+ LS +EP ++SI+RIMH+S YNDGDP+  +DQS+++D+VFNYHPDK  KMGSG++++M
Sbjct: 1898 QDALSLIEPTMKSIRRIMHKSGYNDGDPIRPEDQSFIIDNVFNYHPDKAAKMGSGIDHLM 1957

Query: 501  VNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPRSG 331
            +++HSSFQD+RC Y+VSTDG +EDFSYRKC+ N IK ++P +A+ F+ KYFRKP+ G
Sbjct: 1958 ISRHSSFQDSRCLYVVSTDGRKEDFSYRKCLGNLIKSRFPDVADEFLDKYFRKPKPG 2014


>ref|XP_007133762.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
            gi|561006762|gb|ESW05756.1| hypothetical protein
            PHAVU_011G206900g [Phaseolus vulgaris]
          Length = 2052

 Score =  238 bits (606), Expect = 6e-60
 Identities = 144/393 (36%), Positives = 210/393 (53%), Gaps = 55/393 (13%)
 Frame = -3

Query: 1347 SQSSDPSTDTWGTLAEADKTGQNKNDG---------KSQWPSQSSDPSADTWGTLAEADK 1195
            +Q+ +  +D WG    A+ TGQ K+           KS+ P+  S+   D+WG+    D 
Sbjct: 1633 TQNDNSGSDAWG----ANSTGQTKSKSNEWSGRGKNKSEIPAGGSENVQDSWGSGTRKDV 1688

Query: 1194 TGQNKNDGKSQWGQWKNSAKPSEESPRYGGWNINESQKQP----QVEEPGETWGRHGTEE 1027
            T  + +   S  G  K+    +  S  + GW  N+S+        V+E  ++WG  G  +
Sbjct: 1689 TQVDTSVSGSWGGSRKDQTNTT--SNEWAGWGRNKSEIPAGGCETVQE--DSWGS-GKLK 1743

Query: 1026 ADVTGGNQNDGNPQWG------------QWRESHTKPSE------ESPSYGGWNIRKSEK 901
             DVT    N G+  WG            +W  +  + ++      +  S+   N++   K
Sbjct: 1744 DDVTQ-KDNSGSGAWGANKTGLTKTEVDEWARNKVETADGGSEKLQEDSWNSGNLKSESK 1802

Query: 900  RPCDAWGQRDGEEGTGGWNKSEGKSQSSNAGDWK-----------------------IKK 790
                +WG +    G+  W+     +Q+S++  W+                        KK
Sbjct: 1803 VGNASWG-KPNSSGSQSWDSHNQSNQNSSSRGWESHIASANSDSEKGFQWGKQGRESFKK 1861

Query: 789  GRAAMSPGKFDDRNDWSASGIFTATR-QRLDQFTSEEQNILSDVEPILQSIKRIMHQSRY 613
             R   S G+  +  DW        T  QRLD ++SEEQ++L ++EPI+QSI+RIM Q  Y
Sbjct: 1862 NRFEGSQGRGSNSGDWKNRNRPPRTPGQRLDLYSSEEQDVLKEIEPIMQSIRRIMQQQGY 1921

Query: 612  NDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHRE 433
            NDGDPL ADDQ +VL++VF +HPDK TKMG+G++YVMVNKHSSFQD+RCFY+V  DG RE
Sbjct: 1922 NDGDPLAADDQLFVLENVFEHHPDKDTKMGAGIDYVMVNKHSSFQDSRCFYVVLKDGRRE 1981

Query: 432  DFSYRKCMENFIKDKYPGMAESFIKKYFRKPRS 334
            DFSYRKC++N+I+ KYP +AESF  KYFRKPR+
Sbjct: 1982 DFSYRKCLDNWIRKKYPELAESFFGKYFRKPRN 2014


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2020

 Score =  233 bits (594), Expect = 1e-58
 Identities = 134/362 (37%), Positives = 190/362 (52%), Gaps = 39/362 (10%)
 Frame = -3

Query: 1302 EADKTGQNKNDGKSQWPSQSSDPSAD----TWGTLAEADKTGQNKNDGKSQWG------- 1156
            +A+   Q K++  S W  +      D    +WG+    DK  Q  N G   WG       
Sbjct: 1638 DANAADQTKSNEWSGWGKKKDVTQEDNVQHSWGSGKRKDKVTQEDNSGSGDWGANRTDLA 1697

Query: 1155 -----QWKNSAKPSEESPRYGGWNI----------NESQKQPQV-----EEPGETWGRHG 1036
                 +W +  K   E P  G  N+          N++QK         E  G  W R+ 
Sbjct: 1698 ITKSSEWSSWGKNKTEIPAGGSANVQNDSWGLGKLNDTQKDNSGCGAWGENSGSAWVRNK 1757

Query: 1035 TEEADVTGGNQNDGNPQWGQWRESHTKPSEESPSYGGWNIRKSEKRPCDAWGQRDGEEGT 856
             E  D  GG++    PQ   W   + K   +  +      + SE    D+  Q +    +
Sbjct: 1758 AETID--GGSEK---PQEDAWNSGNWKAESKVGNTTWGKPKSSESHAWDSHNQSNQNSSS 1812

Query: 855  GGWNKSEGKSQSSNAGDWKIKKGRAAMSPGKFD-------DRNDW-SASGIFTATRQRLD 700
             GW      + S N   ++  KGR +    +F+       +  DW + +    A  QRLD
Sbjct: 1813 QGWESHIASANSENEKGFQWGKGRDSFKKNRFEGSQGRGSNAGDWKNRNRPPRAPGQRLD 1872

Query: 699  QFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGS 520
             ++SEEQ++L D+EPI+QSI+RIM Q  Y+DGDPL A+DQ +VL++VF +HPDK TKMG+
Sbjct: 1873 IYSSEEQDVLKDIEPIMQSIRRIMQQQGYSDGDPLAAEDQLFVLENVFEHHPDKETKMGA 1932

Query: 519  GVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKP 340
            G++YVMVNKHSSFQ++RCFY+V  DG  +DFSYRKC+ N+I  KYP +AESF+ KYFRKP
Sbjct: 1933 GIDYVMVNKHSSFQESRCFYVVCKDGQSKDFSYRKCLANYISKKYPDLAESFLGKYFRKP 1992

Query: 339  RS 334
            R+
Sbjct: 1993 RA 1994



 Score = 58.9 bits (141), Expect = 5e-06
 Identities = 51/230 (22%), Positives = 85/230 (36%), Gaps = 25/230 (10%)
 Frame = -3

Query: 1344 QSSDPSTDTWGTLAEADKTGQNKND------GKSQWPS------QSSDPSADTWGTLAEA 1201
            Q     ++TW T   AD+T    N+       KS+ P+      Q     ++ W     A
Sbjct: 1439 QEDSSKSNTWNTSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSKSNAWNRSTTA 1498

Query: 1200 DKTGQNKNDGKSQWGQWKN------SAKPSEESPRYGGWNINESQKQPQVEEPGETWGRH 1039
            D+T + K++  S WG  K+      S    E+S +   WN + +  Q + +     W   
Sbjct: 1499 DQT-KTKSNEWSAWGSNKSEIPAGGSKAVQEDSSKSNAWNTSTTADQTKTK--SNEWSAW 1555

Query: 1038 GTEEADVTGGN----QNDGNPQWGQWRESHTKPSEESPSYGGWNIRKSEKRPCDAWGQRD 871
            G+ ++++  G     Q D +  W     + T   +       W+ R S K    A G + 
Sbjct: 1556 GSNKSEIPAGGSKAVQEDSSKAW----NTSTTADQTKTKSNEWSARVSNKSEIPAGGSKA 1611

Query: 870  GEE---GTGGWNKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASG 730
             +E   G+  W     +  +S  G W         S       N+WS  G
Sbjct: 1612 VQEDSWGSSKWKADVAQEDNSRLGAWDANAADQTKS-------NEWSGWG 1654


>gb|EYU38281.1| hypothetical protein MIMGU_mgv1a000048mg [Mimulus guttatus]
          Length = 2113

 Score =  226 bits (576), Expect = 2e-56
 Identities = 139/365 (38%), Positives = 196/365 (53%), Gaps = 37/365 (10%)
 Frame = -3

Query: 1320 TWGT-LAEADKTGQNKNDGKSQWPSQSSDPSADTWGTLAEADKTGQNKNDGKSQWGQWKN 1144
            TWG   A  +     K+     W S      + TWG +    KT Q +N  KS WG    
Sbjct: 1696 TWGRDAAPTENVSSPKSQEDGLWSSAQKGEQS-TWGHV----KTSQTQN--KSTWGGDTA 1748

Query: 1143 SAK--PSEESPRYGGWNINESQKQPQV-----------------EEPGETWGRHGT---- 1033
              +  PS +S   G W+   + ++ Q                   EP  TWG        
Sbjct: 1749 PIENVPSPKSQEDGLWSSASAAQKEQDGSKDNNPWQTKVAEQANSEPLSTWGSSSDWVKP 1808

Query: 1032 EEADVTGGNQNDGNPQWGQWRESHTKPSEESPSYGGWNIRK------SEKRPCDAWGQRD 871
            +    TG N  + +P    W  S  K   +S    GW   K      ++++P   WG+  
Sbjct: 1809 DSQTPTGDNTKNESP----WSSSQ-KLLNDSTDSQGWGSSKVDTANDNDEQP--QWGRGR 1861

Query: 870  GEEGTGGWNKSEGKSQSSNAG-------DWKIKKGRAAMSPGKFDDRNDWSASGIFTATR 712
            G     GW +  G+ +  + G       DWK K+     S G  DD N   A GIFTA+R
Sbjct: 1862 GRGRGRGWGRGVGRGREGSQGRGPTNDRDWKNKR-----SGGPVDDPN---APGIFTASR 1913

Query: 711  QRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTT 532
            QRLD FT+EEQ +L + E I+++I+R+MHQ+ YNDGDPL+ADDQ Y++D+V N+HP+K+ 
Sbjct: 1914 QRLDSFTAEEQEVLLETETIMKNIRRVMHQTGYNDGDPLSADDQKYIVDNVLNHHPEKSL 1973

Query: 531  KMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKY 352
            K+G+G++++MVNKHS FQ +RC Y V+ DG + DFSYRKC++NFI+ KYP +AESFI KY
Sbjct: 1974 KIGAGLDHIMVNKHSEFQMSRCLYAVTIDGSKADFSYRKCLDNFIRGKYPDVAESFIAKY 2033

Query: 351  FRKPR 337
            F+KP+
Sbjct: 2034 FKKPQ 2038


>emb|CAN63470.1| hypothetical protein VITISV_024603 [Vitis vinifera]
          Length = 1081

 Score =  223 bits (568), Expect = 2e-55
 Identities = 167/465 (35%), Positives = 209/465 (44%), Gaps = 132/465 (28%)
 Frame = -3

Query: 1329 STDTWGT-LAEADKTGQNKNDGKSQWPSQSSDPSADTWGTLAEADKTGQNKNDG-KSQWG 1156
            ++  WG  + EADKTG NKNDGK Q        S D W      +KT Q+   G  S  G
Sbjct: 601  ASSAWGKKIDEADKTGWNKNDGKPQMDKLRE--SCD-WDCKVAQEKTTQSTYGGISSTTG 657

Query: 1155 QWKNSAKPSE-----ESP-RYGGWNIN--------------------------------E 1090
             WK +    E     ESP     W+ N                                E
Sbjct: 658  DWKKNELQMEVVQHDESPVNEHSWDANLPEDPLAQATTSVGWDSSTGKDWTKRKLQSPSE 717

Query: 1089 SQKQPQV-----------EEPGETWGRHGTEEADVTGGNQNDGNPQWGQWRESHTK---- 955
             Q+ P +           E+  +    HG +     G N  +   QW Q R S  K    
Sbjct: 718  QQRDPAIKSWSSSHNVMKEQSNQPASTHGWDSPGAKGWNDVEEQSQWNQ-RGSAVKNDQS 776

Query: 954  -------PSEES---PSYGGWNIRKS----EKRPCDAWGQRDGE----EGTGGWNKSEGK 829
                   PS E    PS  GW    +    E      WGQ  G+    EG+ GW      
Sbjct: 777  ESSHGWGPSNEQNQLPSSQGWGSPNAGAGHESETQSQWGQPSGKKSRPEGSRGWG----- 831

Query: 828  SQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPIL 649
               SN  +WK KK R     G  +D  D+SA GIFTATRQR+D FTSEEQ+IL DVEPI+
Sbjct: 832  ---SNNTEWKNKKNRPNKPQGPLND--DYSAGGIFTATRQRVDIFTSEEQDILLDVEPIM 886

Query: 648  QSIKRIMHQSR------------------------YNDGDPLTAD--------------D 583
            QSI+RIMHQ+                         Y  G P   D              +
Sbjct: 887  QSIRRIMHQAGYLSMNLYANIFIVVAGMVKIEYLVYGQGVPTLGDTKHWHSGAVSLPHSE 946

Query: 582  QSYVLD---------------------HVFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRC 466
            ++Y +D                      VFN HPDK  KMG+G++YVMV++HSSF ++RC
Sbjct: 947  RTYKIDIGVQYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRC 1006

Query: 465  FYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPRSG 331
            FY+VSTDGH+EDFSYRKC+ENFIK+KYP  AE+FI KYFR+PR+G
Sbjct: 1007 FYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAG 1051


>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
            arietinum]
          Length = 2263

 Score =  219 bits (557), Expect = 3e-54
 Identities = 136/375 (36%), Positives = 188/375 (50%), Gaps = 38/375 (10%)
 Frame = -3

Query: 1347 SQSSDPSTDTWGTLAEADKTGQNKNDGKSQWPSQSSDPSAD---------TWGTLAEADK 1195
            S+++      WG+       G++K   +  W SQ     AD         +WG   +A K
Sbjct: 1850 SKTNSGGWKAWGSSKTEVHEGESKKVQEDSWKSQKWKAGADVTQDSPKMGSWGATKDATK 1909

Query: 1194 TGQNKNDGKSQWGQWKN------SAKPSEESPRYGGWNINESQKQPQVEEPGE---TWGR 1042
                K++  S WG+ K+      S K  E+S   G            ++E      TW  
Sbjct: 1910 P---KSNDWSSWGKKKDEIHDGGSEKIQEDSWSSGKRKAESKSVADVMQEDSSKSNTWEH 1966

Query: 1041 HGTEEADVTGGNQNDGNPQWGQWRESHTKP------SEESPSYGGWNIR----KSEKRPC 892
               +  D         N  WG+ +    +P      S  + S  GW+ +     S+    
Sbjct: 1967 KSDDVKDSWDAKVPVANSSWGKPKSQENQPWDSKNESNPTASSRGWDSQVASANSDSDKN 2026

Query: 891  DAWGQR----------DGEEGTGGWNKSEGKSQSSNAGDWKIKKGRAAMSPGKFDDRNDW 742
              WG+           +G +G+ GW         SNAGDWK  K R A  PG        
Sbjct: 2027 FQWGKPGRESFKKNRFEGSQGSQGWG--------SNAGDWK-NKNRPARPPGP------- 2070

Query: 741  SASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDH 562
                       RLD ++SEEQ+IL D+EPI+QSI+RIM Q  YNDGDPL A+DQ YVL++
Sbjct: 2071 -----------RLDLYSSEEQDILKDIEPIVQSIRRIMQQQGYNDGDPLAAEDQQYVLEN 2119

Query: 561  VFNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYP 382
            VF +HPDK TKMG G+++VMV++HS+FQ++RCFY+V  DG +EDFSYRKC+E+F++ KY 
Sbjct: 2120 VFEHHPDKETKMGVGIDHVMVSRHSNFQESRCFYVVLKDGKKEDFSYRKCLESFVRKKYA 2179

Query: 381  GMAESFIKKYFRKPR 337
              AESF  KYFRKPR
Sbjct: 2180 DTAESFCGKYFRKPR 2194


>ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|355521872|gb|AET02326.1| Protein
            DCL [Medicago truncatula]
          Length = 481

 Score =  218 bits (554), Expect = 6e-54
 Identities = 132/374 (35%), Positives = 196/374 (52%), Gaps = 47/374 (12%)
 Frame = -3

Query: 1317 WGT----LAEADKTGQNKNDGKSQWP-----SQSSDPSADTWGTLAEADKTGQNKNDGKS 1165
            WG+    + E + T    +    +W      SQ     +  WG       T    ND +S
Sbjct: 43   WGSSKPEVHEGESTKVQDSWNSQKWKAAEDVSQKDSQKSSAWGA------TKPKSNDNRS 96

Query: 1164 QWGQWKNSAKPS-EESPRYGGW-----NINES--------------QKQPQ------VEE 1063
             WGQ K+      E+S R   W     N+ +S               K P+        E
Sbjct: 97   SWGQKKDEIHVMPEDSSRSNAWEQKPENVKDSWVAKVPVANSSWGKAKSPENRPWDSKNE 156

Query: 1062 PGETWGRHGTEEADVTGGNQNDGNPQWGQWRESHTKP-SEESPSYGGWNIRKS-EKRPCD 889
            P  ++G+  ++E +    ++N+ +  WG+ +   ++P   ++ S   W   KS E  P D
Sbjct: 157  PNNSFGKPNSQENE-PWDSKNESDSSWGKPKSQESQPWDSKNESNSSWGKPKSQENHPWD 215

Query: 888  AWGQRDGEEGTGGWNK--SEGKSQSSNAGDWKIKKGRAAMSPGKFD-------DRNDW-S 739
            +  + +   G+ GW+   +   S+S  +  W  K+GR +    +F+       +  DW +
Sbjct: 216  SKNESNQTAGSRGWDSQVASANSESDKSFQWG-KQGRDSFKKNRFEGSQSGGPNAGDWKN 274

Query: 738  ASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHV 559
             S       QR + +T EEQ+I+ D+EPI+QSI+RIM    YNDGDPL  +DQ YVL++V
Sbjct: 275  RSRPVRPPGQRFELYTPEEQDIMKDIEPIVQSIRRIMQLQGYNDGDPLANEDQKYVLENV 334

Query: 558  FNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPG 379
            F +HPDK TKMG GV++VMV+KHS+FQD+RC Y+V  DG +EDFSYRKC+EN ++ KYP 
Sbjct: 335  FEHHPDKETKMGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRKKYPE 394

Query: 378  MAESFIKKYFRKPR 337
             AESF  KYFRKP+
Sbjct: 395  TAESFCGKYFRKPQ 408


>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
            gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
            subunit [Medicago truncatula]
          Length = 2032

 Score =  218 bits (554), Expect = 6e-54
 Identities = 132/374 (35%), Positives = 196/374 (52%), Gaps = 47/374 (12%)
 Frame = -3

Query: 1317 WGT----LAEADKTGQNKNDGKSQWP-----SQSSDPSADTWGTLAEADKTGQNKNDGKS 1165
            WG+    + E + T    +    +W      SQ     +  WG       T    ND +S
Sbjct: 1594 WGSSKPEVHEGESTKVQDSWNSQKWKAGEDVSQKDSQKSSAWGA------TKPKSNDNRS 1647

Query: 1164 QWGQWKNSAKPS-EESPRYGGW-----NINES--------------QKQPQ------VEE 1063
             WGQ K+      E+S R   W     N+ +S               K P+        E
Sbjct: 1648 SWGQKKDEIHVMPEDSSRSNAWEQKPENVKDSWVAKVPVANSSWGKAKSPENRPWDSKNE 1707

Query: 1062 PGETWGRHGTEEADVTGGNQNDGNPQWGQWRESHTKP-SEESPSYGGWNIRKS-EKRPCD 889
            P  ++G+  ++E +    ++N+ +  WG+ +   ++P   ++ S   W   KS E  P D
Sbjct: 1708 PNNSFGKPNSQENE-PWDSKNESDSSWGKPKSQESQPWDSKNESNSSWGKPKSQENHPWD 1766

Query: 888  AWGQRDGEEGTGGWNK--SEGKSQSSNAGDWKIKKGRAAMSPGKFD-------DRNDW-S 739
            +  + +   G+ GW+   +   S+S  +  W  K+GR +    +F+       +  DW +
Sbjct: 1767 SKNESNQTAGSRGWDSQVASANSESDKSFQWG-KQGRDSFKKNRFEGSQSGGPNAGDWKN 1825

Query: 738  ASGIFTATRQRLDQFTSEEQNILSDVEPILQSIKRIMHQSRYNDGDPLTADDQSYVLDHV 559
             S       QR + +T EEQ+I+ D+EPI+QSI+RIM    YNDGDPL  +DQ YVL++V
Sbjct: 1826 RSRPVRPPGQRFELYTPEEQDIMKDIEPIVQSIRRIMQLQGYNDGDPLANEDQKYVLENV 1885

Query: 558  FNYHPDKTTKMGSGVNYVMVNKHSSFQDTRCFYIVSTDGHREDFSYRKCMENFIKDKYPG 379
            F +HPDK TKMG GV++VMV+KHS+FQD+RC Y+V  DG +EDFSYRKC+EN ++ KYP 
Sbjct: 1886 FEHHPDKETKMGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRKKYPE 1945

Query: 378  MAESFIKKYFRKPR 337
             AESF  KYFRKP+
Sbjct: 1946 TAESFCGKYFRKPQ 1959


>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
            gi|482562261|gb|EOA26451.1| hypothetical protein
            CARUB_v10022497mg [Capsella rubella]
          Length = 1959

 Score =  217 bits (552), Expect = 1e-53
 Identities = 124/349 (35%), Positives = 191/349 (54%), Gaps = 19/349 (5%)
 Frame = -3

Query: 1317 WGTLAEADKTGQNKNDGKSQWPSQSSDPSADTWGTLAEADKTGQNKNDGKSQWG-QWKNS 1141
            WG+        + +++G S   S  +   A  WG+    DK     N   S WG Q K  
Sbjct: 1528 WGSQGNMKSETETESNGASWGSSGKTKSGAAAWGS---CDKNNMETNSEPSAWGSQGKKK 1584

Query: 1140 AKPSEESPRYGGWN--INESQK-----------QPQVEEPGETWGRHG--TEEADVTGGN 1006
            A+       +G W+  I+E++              + E     WG  G  +  A     N
Sbjct: 1585 AETESGPASWGAWDKKISETESGLAGWGNGDKINSETESGAAAWGSWGQPSPTAADKDTN 1644

Query: 1005 QNDGNPQWGQWRESHT--KPSEESPSYGGWNIRKSEKRPCDAWGQRDGEEGTGGWNKSEG 832
            ++DGNP W   +E+ +  K  +E   +G      ++K P D           GGW+   G
Sbjct: 1645 EDDGNP-WVSLKETKSGEKDEKEKSQWGN----PAKKFPSDG--------SYGGWSNGGG 1691

Query: 831  KSQSSNAGDWKIKKGRAAMSPGKFDDRNDWSASGIFTATRQRLDQFTSEEQNILSDVEPI 652
                    +W+ K+      P     R++ + + +FTAT+QRLD FTSEEQ +LSDVEP+
Sbjct: 1692 -------AEWRGKRNHTPRPP-----RSEDNLAPMFTATKQRLDSFTSEEQELLSDVEPV 1739

Query: 651  LQSIKRIMHQSRYNDGDPLTADDQSYVLDHVFNYHPDKTTKMGSGVNYVMVNKHSSFQDT 472
            ++++++IMH S Y DG+P++ DD+++VL+ + N+HP+K  K+GS V+++ V+KH++F DT
Sbjct: 1740 MRTLRKIMHMSGYPDGEPISDDDKTFVLEKILNFHPEKERKLGSAVDFITVDKHTTFTDT 1799

Query: 471  RCFYIVSTDGHREDFSYRKCMENFIKDKYPGMAESFIKKYFRKPR-SGN 328
            RCF++VSTDG ++DFSYRK + N++  KYP  AE FI KYF+KPR SGN
Sbjct: 1800 RCFFVVSTDGAKQDFSYRKSLNNYLMTKYPDRAEEFIDKYFKKPRPSGN 1848



 Score = 62.0 bits (149), Expect = 6e-07
 Identities = 55/248 (22%), Positives = 90/248 (36%), Gaps = 49/248 (19%)
 Frame = -3

Query: 1338 SDPSTDTWGTLAEADKTGQNKNDGKSQWPSQSSDPSADTWGTL------AEADKTGQNKN 1177
            ++P++D WG  + ++K    KN G    P+      AD WG+        E+D       
Sbjct: 1408 NEPTSDVWGLKSVSEKPWNKKNWGTESAPAAWGSTDADAWGSSNKKNSETESDAAAWGSR 1467

Query: 1176 DGKSQ-----------WGQ-----------WKNSAKPSEESPRYGGWNINESQKQPQVEE 1063
            D ++            W +           W +S K   ++  +  W+ N    +P  E 
Sbjct: 1468 DKRNSDIGSGAGVLGPWNKKSSETESDAAAWGSSGKTKSDAATWSPWDKN--NMEPDSEP 1525

Query: 1062 PGETWGRHGTEEADV----------TGGNQNDGNPQWGQWRESHTKPSEESPSYGGWNIR 913
             G  WG  G  +++           + G    G   WG   +++ + + E  ++G    +
Sbjct: 1526 AG--WGSQGNMKSETETESNGASWGSSGKTKSGAAAWGSCDKNNMETNSEPSAWGSQGKK 1583

Query: 912  KSEKRPCDA-WGQRD-----GEEGTGGWN-----KSEGKSQSSNAGDWKIKKGRAAMSPG 766
            K+E     A WG  D      E G  GW       SE +S ++  G W      AA    
Sbjct: 1584 KAETESGPASWGAWDKKISETESGLAGWGNGDKINSETESGAAAWGSWGQPSPTAADKDT 1643

Query: 765  KFDDRNDW 742
              DD N W
Sbjct: 1644 NEDDGNPW 1651