BLASTX nr result
ID: Akebia23_contig00051741
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia23_contig00051741
(715 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC02672.1| polyprotein [Arabidopsis arenosa] 76 2e-35
gb|AAC02666.1| polyprotein [Arabidopsis thaliana] 74 1e-34
gb|AAC02664.1| polyprotein [Arabidopsis thaliana] 74 1e-34
gb|AAC02669.1| polyprotein [Arabidopsis thaliana] 74 5e-34
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group... 68 3e-33
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-... 70 6e-33
emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera] 78 6e-33
ref|XP_004986808.1| PREDICTED: uncharacterized protein LOC101773... 79 7e-33
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g... 70 8e-33
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 70 1e-32
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 70 1e-32
gb|AAB82754.1| retrofit [Oryza longistaminata] 72 2e-32
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 72 5e-32
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 66 6e-32
gb|AAX95666.1| Reverse transcriptase (RNA-dependent DNA polymera... 69 1e-31
dbj|BAB10876.1| polyprotein [Arabidopsis thaliana] 79 1e-31
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 69 2e-31
gb|AAD14478.1| Strong similarity to gb|AF039376 Evelknievel retr... 74 2e-31
gb|EMT21953.1| ABC transporter C family member 10 [Aegilops taus... 67 2e-31
gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subc... 65 3e-31
>gb|AAC02672.1| polyprotein [Arabidopsis arenosa]
Length = 1390
Score = 76.3 bits (186), Expect(3) = 2e-35
Identities = 33/60 (55%), Positives = 43/60 (71%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 378
FL G L +EVY+ +P GF+ K HVCRLHK +YGL+QAPRAW+Q+ +LL GF+ S
Sbjct: 1051 FLQGTLSDEVYVMQPPGFVDKDNPHHVCRLHKALYGLKQAPRAWYQELRSYLLTQGFVNS 1110
Score = 68.9 bits (167), Expect(3) = 2e-35
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Frame = -2
Query: 297 SGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKD-TLELLFKTEMI 121
+G DTN +T FI +L + FS+KDLGE+ +FLG+EA RTS L L QK L+LL KT M+
Sbjct: 1138 TGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNML 1197
Query: 120 DCRPSSTLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
P T ++ LSL G P + +Y ++
Sbjct: 1198 AAHPVLTPMSPTPKLSLTSG--TPLDKPSEYRAV 1229
Score = 51.2 bits (121), Expect(3) = 2e-35
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = -1
Query: 664 FSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
F +TFSP +KS TV VL +AVS+GW IRQ+DV NA
Sbjct: 1015 FKETFSPVIKSTTVRSVLHVAVSKGWSIRQIDVNNA 1050
>gb|AAC02666.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 73.6 bits (179), Expect(3) = 1e-34
Identities = 32/60 (53%), Positives = 43/60 (71%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 378
FL G L +EVY+ +P GF+ K HVCRL+K +YGL+QAPRAW+Q+ +LL GF+ S
Sbjct: 1055 FLQGTLSDEVYVTQPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVNS 1114
Score = 68.9 bits (167), Expect(3) = 1e-34
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Frame = -2
Query: 297 SGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKD-TLELLFKTEMI 121
+G DTN +T FI +L + FS+KDLGE+ +FLG+EA RTS L L QK L+LL KT M+
Sbjct: 1142 TGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNML 1201
Query: 120 DCRPSSTLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
P T ++ LSL G P + +Y ++
Sbjct: 1202 AAHPVLTPMSPTPKLSLTSGK--PLDKPSEYRAV 1233
Score = 51.6 bits (122), Expect(3) = 1e-34
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = -1
Query: 664 FSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
F +TFSP +KS TV VL +AVS+GW IRQ+DV NA
Sbjct: 1019 FKETFSPVIKSTTVRSVLHIAVSKGWSIRQIDVNNA 1054
>gb|AAC02664.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 73.6 bits (179), Expect(3) = 1e-34
Identities = 32/60 (53%), Positives = 43/60 (71%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 378
FL G L +EVY+ +P GF+ K HVCRL+K +YGL+QAPRAW+Q+ +LL GF+ S
Sbjct: 1055 FLQGTLSDEVYVTQPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVNS 1114
Score = 68.9 bits (167), Expect(3) = 1e-34
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Frame = -2
Query: 297 SGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKD-TLELLFKTEMI 121
+G DTN +T FI +L + FS+KDLGE+ +FLG+EA RTS L L QK L+LL KT M+
Sbjct: 1142 TGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNML 1201
Query: 120 DCRPSSTLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
P T ++ LSL G P + +Y ++
Sbjct: 1202 AAHPVLTPMSPTPKLSLTSGK--PLDKPSEYRAV 1233
Score = 51.6 bits (122), Expect(3) = 1e-34
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = -1
Query: 664 FSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
F +TFSP +KS TV VL +AVS+GW IRQ+DV NA
Sbjct: 1019 FKETFSPVIKSTTVRSVLHIAVSKGWSIRQIDVNNA 1054
>gb|AAC02669.1| polyprotein [Arabidopsis thaliana]
Length = 1451
Score = 73.6 bits (179), Expect(3) = 5e-34
Identities = 32/60 (53%), Positives = 43/60 (71%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 378
FL G L +EVY+ +P GF+ K HVCRL+K +YGL+QAPRAW+Q+ +LL GF+ S
Sbjct: 1055 FLQGTLSDEVYVTQPPGFVDKDNAHHVCRLYKALYGLKQAPRAWYQELRSYLLTQGFVNS 1114
Score = 68.9 bits (167), Expect(3) = 5e-34
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Frame = -2
Query: 297 SGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKD-TLELLFKTEMI 121
+G DTN +T FI +L + FS+KDLGE+ +FLG+EA RTS L L QK L+LL KT M+
Sbjct: 1142 TGSDTNIITRFIANLAARFSLKDLGEMSYFLGIEATRTSKGLHLMQKRYVLDLLEKTNML 1201
Query: 120 DCRPSSTLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
P T ++ LSL G P + +Y ++
Sbjct: 1202 AAHPVLTPMSPTPKLSLTSGK--PLDKPSEYRAV 1233
Score = 49.3 bits (116), Expect(3) = 5e-34
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = -1
Query: 664 FSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
F +TFSP +K TV VL +AVS+GW IRQ+DV NA
Sbjct: 1019 FKETFSPVIKLTTVRSVLHIAVSKGWSIRQIDVNNA 1054
>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1256
Score = 68.2 bits (165), Expect(3) = 3e-33
Identities = 31/57 (54%), Positives = 40/57 (70%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 387
FLHG L EEVYM++P G+ K D+VC+L K +YGL+QAPRAW+ + S L GF
Sbjct: 861 FLHGILEEEVYMKQPPGYEDKVHPDYVCKLDKALYGLKQAPRAWYAKLSQKLQHLGF 917
Score = 66.2 bits (160), Expect(3) = 3e-33
Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -2
Query: 282 NALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPS 106
+A+ + L F++KDLG+L++FLG+E ++ SS + LTQ K +LL + M DC+P
Sbjct: 953 DAVPALLKDLQKDFALKDLGDLHYFLGIEVNKASSGIVLTQEKYVTDLLRRVGMTDCKPV 1012
Query: 105 STLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
ST ++ L+L EGDLL A Y S+
Sbjct: 1013 STPLSTSEKLTLHEGDLLGPNDASNYRSV 1041
Score = 54.7 bits (130), Expect(3) = 3e-33
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = -1
Query: 670 IPFSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
I + TFSP VK+ T+ I+LS+AVSRGW +RQLDV+NA
Sbjct: 823 IDYEDTFSPVVKAATIRIILSIAVSRGWTLRQLDVQNA 860
>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 1621
Score = 70.5 bits (171), Expect(3) = 6e-33
Identities = 33/57 (57%), Positives = 39/57 (68%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 387
FLHG L EEVYM +P GF T HVC+L K +YGL+QAPRAWF + S L+ GF
Sbjct: 780 FLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGF 836
Score = 63.2 bits (152), Expect(3) = 6e-33
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Frame = -2
Query: 279 ALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPSS 103
A + +L F++KDLGEL++FLG+E + + + L Q K +LL K MIDC+P++
Sbjct: 873 ATAALLQNLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPAN 932
Query: 102 TLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
T ++ LSL EG LL A Y S+
Sbjct: 933 TPLSVSEKLSLHEGSLLGPEDASHYRSV 960
Score = 54.7 bits (130), Expect(3) = 6e-33
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = -1
Query: 670 IPFSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
I + TFSP VK+ T+ I+LSLAVS+GW +RQLDV+NA
Sbjct: 742 IDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNA 779
>emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]
Length = 1361
Score = 78.2 bits (191), Expect(3) = 6e-33
Identities = 35/60 (58%), Positives = 44/60 (73%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 378
FLHG L EEVYM++P G+ + HVCRL + +YGL+QAPRAWF +FS FLL+ GF S
Sbjct: 953 FLHGFLNEEVYMEQPPGYTDPQFPQHVCRLKRALYGLKQAPRAWFHRFSSFLLKHGFHSS 1012
Score = 58.9 bits (141), Expect(3) = 6e-33
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = -2
Query: 369 ASMLI*HSRDGPXXXXXXXXXXXLSGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAH 190
+S+ HS G ++G + + FI L++ FSMKDLG+L++FLGVE
Sbjct: 1016 SSLFFYHSSLGTVYLLLYVDDMIITGSTPSLVHTFITRLSNEFSMKDLGDLHYFLGVEVQ 1075
Query: 189 RTSSSLQLTQ-KDTLELLFKTEMIDCRPSSTLVTFGSNLSLLEGDL 55
L L+Q K L+LL + MID +P ST G +LS EG L
Sbjct: 1076 ANEKGLFLSQTKYALDLLQRASMIDAKPISTPFVVGQHLS-AEGTL 1120
Score = 51.2 bits (121), Expect(3) = 6e-33
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = -1
Query: 670 IPFSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
+ F TFSP V+ TV I+LSLAV+ GW++ QLDVKNA
Sbjct: 915 LDFGDTFSPVVRPATVRIILSLAVTSGWRLHQLDVKNA 952
>ref|XP_004986808.1| PREDICTED: uncharacterized protein LOC101773259 [Setaria italica]
Length = 1950
Score = 79.3 bits (194), Expect(3) = 7e-33
Identities = 41/88 (46%), Positives = 54/88 (61%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 378
FLHG L E VY Q+P GF+ D+VCRL K +YGL+QAPRAW+Q+F+ F+ Q GF+ +
Sbjct: 1547 FLHGHLEETVYCQQPPGFVDPGAPDYVCRLQKSLYGLKQAPRAWYQRFATFIGQLGFV-T 1605
Query: 377 SIMHLCLFDILEMVQLSYSFMLTTSFFL 294
S LF + E LSY + L
Sbjct: 1606 SASDTSLFILREGTSLSYLLLYVDDIVL 1633
Score = 59.7 bits (143), Expect(3) = 7e-33
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Frame = -2
Query: 276 LTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKD-TLELLFKTEMIDCRPSST 100
L + L+S F+M DLG L+ FLG+ R+S L L+Q+ +ELL + M +C P++T
Sbjct: 1641 LQRIMARLSSEFAMTDLGALHHFLGITVTRSSDGLFLSQRQYAVELLQRAGMAECHPTTT 1700
Query: 99 LVTFGSNLSLLEGDLLPFFRAKKYHSIA 16
V + LS +GDLL A +Y S+A
Sbjct: 1701 PVDTHAKLSAADGDLLSEKDASEYRSLA 1728
Score = 48.9 bits (115), Expect(3) = 7e-33
Identities = 22/38 (57%), Positives = 27/38 (71%)
Frame = -1
Query: 670 IPFSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
+ + +TFSP VK T+ VLS+A SR W I QLDVKNA
Sbjct: 1509 VDYDETFSPVVKPATIRSVLSIAASRAWPIHQLDVKNA 1546
>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
Japonica Group]
Length = 821
Score = 70.1 bits (170), Expect(3) = 8e-33
Identities = 31/60 (51%), Positives = 44/60 (73%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 378
FLHG L EEVYM++P G+ K+ ++VC+L K +YGL+QAPRAW+ + S L + GF+ S
Sbjct: 420 FLHGVLEEEVYMEQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPS 479
Score = 60.1 bits (144), Expect(3) = 8e-33
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Frame = -2
Query: 282 NALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPS 106
+A + + L+ F++KDLG+L++FLG+E H+ L L+Q K +LL + M +C+P
Sbjct: 512 DATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPV 571
Query: 105 STLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
ST ++ LS+ EG LL + +Y S+
Sbjct: 572 STPLSTSEKLSVNEGTLLGPQDSTQYRSV 600
Score = 57.8 bits (138), Expect(3) = 8e-33
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = -1
Query: 670 IPFSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
I + TFSP VK+ T+ IVLSLAVSRGW +RQLDVKNA
Sbjct: 382 IDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNA 419
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 70.5 bits (171), Expect(3) = 1e-32
Identities = 33/57 (57%), Positives = 39/57 (68%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 387
FLHG L EEVYM +P GF T HVC+L K +YGL+QAPRAWF + S L+ GF
Sbjct: 1051 FLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGF 1107
Score = 62.4 bits (150), Expect(3) = 1e-32
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = -2
Query: 279 ALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPSS 103
A + L F++KDLGEL++FLG+E + + + L Q K +LL K MIDC+P++
Sbjct: 1144 ATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPAN 1203
Query: 102 TLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
T ++ LSL EG LL A Y S+
Sbjct: 1204 TPLSVSEKLSLHEGSLLGPEDASHYRSV 1231
Score = 54.7 bits (130), Expect(3) = 1e-32
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = -1
Query: 670 IPFSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
I + TFSP VK+ T+ I+LSLAVS+GW +RQLDV+NA
Sbjct: 1013 IDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNA 1050
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 70.5 bits (171), Expect(3) = 1e-32
Identities = 33/57 (57%), Positives = 39/57 (68%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 387
FLHG L EEVYM +P GF T HVC+L K +YGL+QAPRAWF + S L+ GF
Sbjct: 1058 FLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGF 1114
Score = 62.4 bits (150), Expect(3) = 1e-32
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = -2
Query: 279 ALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPSS 103
A + L F++KDLGEL++FLG+E + + + L Q K +LL K MIDC+P++
Sbjct: 1151 ATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPAN 1210
Query: 102 TLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
T ++ LSL EG LL A Y S+
Sbjct: 1211 TPLSVSEKLSLHEGSLLGPEDASHYRSV 1238
Score = 54.7 bits (130), Expect(3) = 1e-32
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = -1
Query: 670 IPFSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
I + TFSP VK+ T+ I+LSLAVS+GW +RQLDV+NA
Sbjct: 1020 IDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNA 1057
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 71.6 bits (174), Expect(3) = 2e-32
Identities = 32/57 (56%), Positives = 42/57 (73%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 387
FLHG L EEVYMQ+P GF + D+VC+L K +YGL+QAPRAW+ + S L++ GF
Sbjct: 1050 FLHGFLEEEVYMQQPPGFESSSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGF 1106
Score = 60.1 bits (144), Expect(3) = 2e-32
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = -2
Query: 279 ALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPSS 103
A T + LN F++KDLG+L++FLG+E + S+ + LTQ K +LL + M +C+P S
Sbjct: 1143 ATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEKYANDLLKRVNMSNCKPVS 1202
Query: 102 TLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
T ++ L+L EG L A +Y SI
Sbjct: 1203 TPLSVSEKLTLYEGSPLGPNDAIQYRSI 1230
Score = 55.1 bits (131), Expect(3) = 2e-32
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = -1
Query: 670 IPFSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
I + TFSP VK+ T+ I+LS+AVSRGW +RQLDV+NA
Sbjct: 1012 IDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNA 1049
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 71.6 bits (174), Expect(3) = 5e-32
Identities = 32/57 (56%), Positives = 42/57 (73%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 387
FLHG L EEVYMQ+P GF + D+VC+L+K +YGL+QAPRAW+ + S L + GF
Sbjct: 1053 FLHGFLEEEVYMQQPPGFESSSKPDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGF 1109
Score = 60.1 bits (144), Expect(3) = 5e-32
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = -2
Query: 279 ALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPSS 103
A T + LN F++KDLG+L++FLG+E + S+ + LTQ K ++L + M +C+P S
Sbjct: 1146 ATTALLKDLNKEFTLKDLGDLHYFLGIEVTKVSNGVILTQEKYANDMLKRVNMSNCKPVS 1205
Query: 102 TLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
T ++ L+L EG L A +Y SI
Sbjct: 1206 TPLSVSEKLTLYEGSPLGPNDATQYRSI 1233
Score = 53.5 bits (127), Expect(3) = 5e-32
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = -1
Query: 670 IPFSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKN 560
I + TFSP VK+ T+ I+LS+AVSRGW +RQLDV+N
Sbjct: 1015 IDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQN 1051
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 66.2 bits (160), Expect(3) = 6e-32
Identities = 29/57 (50%), Positives = 41/57 (71%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 387
FLHG L EEVYM++P G+ +++ +VC+L K +YGL+QAPRAW+ + S L GF
Sbjct: 1052 FLHGFLEEEVYMKQPPGYEDESFPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDLGF 1108
Score = 64.7 bits (156), Expect(3) = 6e-32
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = -2
Query: 279 ALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPSS 103
A++ + L F++KDLG+L++FLG+E ++ + + LTQ K +LL + M DC+P S
Sbjct: 1145 AVSALLQDLKKEFALKDLGDLHYFLGIEVNKVTDEIILTQDKYACDLLRRVNMFDCKPVS 1204
Query: 102 TLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
T ++ LS EGDLL A Y S+
Sbjct: 1205 TPLSTSEKLSAHEGDLLGPLDATNYRSV 1232
Score = 53.9 bits (128), Expect(3) = 6e-32
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = -1
Query: 670 IPFSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
I + TFSP VK+ T+ IVLS+AVSRGW +RQLDV+NA
Sbjct: 1014 IDYEDTFSPVVKAATIRIVLSIAVSRGWCMRQLDVQNA 1051
>gb|AAX95666.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
[Oryza sativa Japonica Group]
gi|108710700|gb|ABF98495.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 757
Score = 68.6 bits (166), Expect(3) = 1e-31
Identities = 32/60 (53%), Positives = 40/60 (66%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 378
FLHG L EEVYM +P GF T ++C+L K +YGL+QAPRAWF + S L+ GF S
Sbjct: 450 FLHGHLEEEVYMDQPPGFEDVTKPHYICKLDKSLYGLKQAPRAWFARLSNKLIDLGFSAS 509
Score = 65.5 bits (158), Expect(3) = 1e-31
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = -2
Query: 279 ALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPSS 103
A T + L F++KDLGEL++FLG+E ++T + + LTQ K +LL K M++C+P++
Sbjct: 543 ATTALLQDLKVEFALKDLGELHYFLGIEVNKTHNGIVLTQDKYATDLLKKVGMLNCKPAT 602
Query: 102 TLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
T ++ LSL EG LL A +Y SI
Sbjct: 603 TPLSVSEKLSLHEGSLLGPNDATQYISI 630
Score = 50.1 bits (118), Expect(3) = 1e-31
Identities = 22/36 (61%), Positives = 29/36 (80%)
Frame = -1
Query: 664 FSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
+ TFS VK+ T+ I+LS+AVSRGW +RQLDV+NA
Sbjct: 414 YEDTFSLVVKAATIRIILSIAVSRGWSLRQLDVQNA 449
>dbj|BAB10876.1| polyprotein [Arabidopsis thaliana]
Length = 1429
Score = 78.6 bits (192), Expect(3) = 1e-31
Identities = 35/60 (58%), Positives = 44/60 (73%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 378
FL G L EEVY+ +P GFI + HVCRL+K +YGL+QAPRAW+Q+ FLLQ GF+ S
Sbjct: 1034 FLQGTLNEEVYVSQPPGFIDRDRPSHVCRLNKALYGLKQAPRAWYQELRRFLLQAGFVNS 1093
Score = 57.4 bits (137), Expect(3) = 1e-31
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = -2
Query: 282 NALT-GFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKDTL-ELLFKTEMIDCRP 109
NAL F L S FS+KDLG L +FLG+EA RTS L L Q+ + +LL K M+D +P
Sbjct: 1124 NALVQAFNASLASRFSLKDLGPLSYFLGIEATRTSRGLHLMQRKYITDLLKKHNMLDTKP 1183
Query: 108 SSTLVTFGSNLSLLEGDLL 52
ST ++ LSLL G L
Sbjct: 1184 VSTPMSPTPKLSLLSGTAL 1202
Score = 47.8 bits (112), Expect(3) = 1e-31
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = -1
Query: 670 IPFSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
I +S+TFSP +KS T+ VL +AV R W I Q+D+ NA
Sbjct: 996 IDYSETFSPVIKSTTIRTVLEVAVKRNWSIHQVDINNA 1033
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 68.6 bits (166), Expect(3) = 2e-31
Identities = 31/57 (54%), Positives = 42/57 (73%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 387
FLHG L EEVYMQ+P GF + ++VC+L K +YGL+QAPRAW+ + S L++ GF
Sbjct: 1041 FLHGFLEEEVYMQQPPGFESFSKPNYVCKLDKALYGLKQAPRAWYSRLSKKLVELGF 1097
Score = 59.7 bits (143), Expect(3) = 2e-31
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Frame = -2
Query: 279 ALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPSS 103
A T + LN F++KDLG+L++FLG+E + + + LTQ K +LL + M +C+P S
Sbjct: 1134 ATTALLKDLNKEFALKDLGDLHYFLGIEVTKVPNGIVLTQEKYANDLLKRVNMSNCKPVS 1193
Query: 102 TLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
T ++ L+L EG L A +Y SI
Sbjct: 1194 TPLSVSEKLTLYEGSPLGPNDATQYRSI 1221
Score = 55.1 bits (131), Expect(3) = 2e-31
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = -1
Query: 670 IPFSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
I + TFSP VK+ T+ I+LS+AVSRGW +RQLDV+NA
Sbjct: 1003 IDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNA 1040
>gb|AAD14478.1| Strong similarity to gb|AF039376 Evelknievel retrotransposon
polyprotein from Arabidopsis arenosa [Arabidopsis
thaliana]
Length = 1194
Score = 74.3 bits (181), Expect(3) = 2e-31
Identities = 32/60 (53%), Positives = 43/60 (71%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 378
FL G+L E+VY+ +P GFI ++VC L K ++GL+QAPRAW+Q+ GFLL CGF S
Sbjct: 1012 FLQGRLTEDVYVAQPPGFINPDRPNYVCHLKKALHGLKQAPRAWYQELRGFLLTCGFTNS 1071
Score = 57.0 bits (136), Expect(3) = 2e-31
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Frame = -2
Query: 297 SGPDTNALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQKD-TLELLFKTEMI 121
+G ++N + FI L + FS+KDLG+L +FL +EA RT + L L Q+ L+LL KT+M+
Sbjct: 1099 TGSNSNLIAQFITCLANRFSLKDLGQLSYFLEIEATRTKAGLHLMQRRYVLDLLTKTKML 1158
Query: 120 DCRPSSTLVTFGSNLSLLEG 61
D + ST ++ L+L G
Sbjct: 1159 DAKTVSTPMSPTPKLTLTSG 1178
Score = 52.0 bits (123), Expect(3) = 2e-31
Identities = 23/38 (60%), Positives = 28/38 (73%)
Frame = -1
Query: 670 IPFSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
+ +S TFSP +KS TV VL +AVSR W IRQLD+ NA
Sbjct: 974 LDYSNTFSPVIKSTTVQTVLDIAVSRSWDIRQLDINNA 1011
>gb|EMT21953.1| ABC transporter C family member 10 [Aegilops tauschii]
Length = 3041
Score = 67.4 bits (163), Expect(3) = 2e-31
Identities = 32/60 (53%), Positives = 39/60 (65%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGFLKS 378
FLHG L EEVYM++P GF K HVC+L +YGL+QAPRAW+ S L GF+ S
Sbjct: 2388 FLHGVLKEEVYMKQPPGFENKDKPFHVCKLDNALYGLKQAPRAWYSHLSQKLQALGFVPS 2447
Score = 60.8 bits (146), Expect(3) = 2e-31
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = -2
Query: 279 ALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPSS 103
A+TG + L++ F++KDLG+L+FFLG+E +T L L+Q K +L+ + + C+ S
Sbjct: 2481 AVTGSLKDLSAEFALKDLGDLHFFLGIEVKKTEDGLHLSQEKYAADLVRRAGLQGCKASP 2540
Query: 102 TLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
T ++ LSL EGDLL + +Y S+
Sbjct: 2541 TPLSSTEKLSLEEGDLLGQEDSTRYRSL 2568
Score = 54.7 bits (130), Expect(3) = 2e-31
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = -1
Query: 670 IPFSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
I + TFSP VK+ T+ +VLS+AVSRGW +RQLDV+NA
Sbjct: 2350 IDYEDTFSPVVKAATIRLVLSIAVSRGWSLRQLDVQNA 2387
>gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1180
Score = 64.7 bits (156), Expect(3) = 3e-31
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -2
Query: 282 NALTGFIGHLNS*FSMKDLGELYFFLGVEAHRTSSSLQLTQ-KDTLELLFKTEMIDCRPS 106
+A+ + L F++KDLG+L++FLG+E ++ S+ + LTQ K +LL + MIDC+P
Sbjct: 771 DAVLTLLQDLQKEFALKDLGDLHYFLGIEVNKISNGIILTQEKYANDLLKRVGMIDCKPV 830
Query: 105 STLVTFGSNLSLLEGDLLPFFRAKKYHSI 19
S ++ L+L EGDLL A Y S+
Sbjct: 831 SASLSTSEKLTLHEGDLLGLNDASNYRSV 859
Score = 64.3 bits (155), Expect(3) = 3e-31
Identities = 30/57 (52%), Positives = 39/57 (68%)
Frame = -3
Query: 557 FLHGKLYEEVYMQKPTGFIGKTWHDHVCRLHKVIYGLQQAPRAWFQQFSGFLLQCGF 387
FLHG L EEVYM++P G+ K +C+L K +YGL+QAPRAW+ + S L Q GF
Sbjct: 679 FLHGILEEEVYMKQPPGYEDKANPGCICKLDKALYGLKQAPRAWYARLSQKLQQLGF 735
Score = 53.5 bits (127), Expect(3) = 3e-31
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = -1
Query: 670 IPFSKTFSPSVKSVTVHIVLSLAVSRGWQIRQLDVKNA 557
I + TFSP VK+ T+ +VLS+AVSRGW +RQLDV NA
Sbjct: 641 IDYEDTFSPVVKAATIRLVLSIAVSRGWTLRQLDVHNA 678