BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00041685
         (1501 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   603   e-170
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-...   563   e-158
ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub...   545   e-152
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...   544   e-152
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   544   e-152
ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D sub...   541   e-151
ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D sub...   541   e-151
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub...   540   e-151
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   540   e-151
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   534   e-149
ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV su...   533   e-149
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   532   e-148
ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citr...   526   e-146
ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV su...   525   e-146
ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV su...   525   e-146
ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV su...   525   e-146
ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV su...   525   e-146
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su...   522   e-145
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su...   522   e-145
ref|XP_007158454.1| hypothetical protein PHAVU_002G153700g [Phas...   516   e-143

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  603 bits (1554), Expect = e-170
 Identities = 312/505 (61%), Positives = 388/505 (76%), Gaps = 10/505 (1%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLCPRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDFSF 185
            +L+ E GV LN FQMQQLEM CP QL  PAI+KAP   + +WTGKQL SMLLPP F++ F
Sbjct: 533  HLVMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVF 592

Query: 186  PSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISMRG 365
            P NGV I+DGE++SSS  S WL+D +GN+FS+LV+    KALD L++AQEVL EW+SMRG
Sbjct: 593  PLNGVRISDGELISSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRG 652

Query: 366  FSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENENAE 545
             SVSL D YLSSDS SRK M++ V  GL   E+T   KQL+VD   + L+  G+ N+N  
Sbjct: 653  LSVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGV 712

Query: 546  VLEV-----SLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSLPK 710
            V +V       +  A L + S+ AF++ FRD+QNLVYQYA++DNSLLAM+KAGSKG+L K
Sbjct: 713  VPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLK 772

Query: 711  LVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQN-VHNTPESNIPYAIVENSF 887
            LVQQGLCLGLQ+S VPLSF+IP +LSCA WN QKV GL+QN      ES IPYA+VENSF
Sbjct: 773  LVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQNDTSEYAESYIPYAVVENSF 832

Query: 888  INGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGSQIIQ 1067
            + GLNP+ECFVHS++ RDSSF  NADLPGTLTR+LMF+MRDL +AYDGTVRNAYG+Q++Q
Sbjct: 833  LMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQ 892

Query: 1068 FSYG----NDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETSPLLNL 1235
            FSY     +  S   +E+    D  G PVGS++AC+ISEAAYSALDQPIS LE SPLLNL
Sbjct: 893  FSYNIEHTSTPSDGINEDTCAYDMGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNL 952

Query: 1236 KKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVMIIYS 1415
            K+VLE G +K+T+DRT+SLFLSKKLE+  +G+EY AL VK+HLEK+LFS++VSTVMI++S
Sbjct: 953  KRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFS 1012

Query: 1416 QQNCHGKLCSPWICHFHVCKDEEKR 1490
             QN      SPW+CHFHVC++  K+
Sbjct: 1013 PQNGSKTHFSPWVCHFHVCEEIAKK 1037


>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
            polymerase II subunit RPB1-B, putative [Theobroma cacao]
          Length = 1484

 Score =  563 bits (1451), Expect = e-158
 Identities = 292/515 (56%), Positives = 376/515 (73%), Gaps = 18/515 (3%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLCPRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDFSF 185
            YL++E GV LN FQMQQLEM CP     PAI+KAP  +S +WTGKQLLSML P  FD+ F
Sbjct: 514  YLVKEDGVLLNLFQMQQLEMFCPNHSPFPAIVKAPLLRSSVWTGKQLLSMLFPLEFDYDF 573

Query: 186  PSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISMRG 365
              N V I +GE++SSS  STWL+D +GN+F +L++ Y  K LD L++AQEVL EW+SMRG
Sbjct: 574  TPNDVVIRNGELISSSEGSTWLRDADGNLFQSLIKHYQGKVLDFLYAAQEVLCEWLSMRG 633

Query: 366  FSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENENAE 545
             SVSL D YLSSDS S+K MM+ +  GLQE+E+T   KQL+VD   D L+ + +E ++  
Sbjct: 634  LSVSLSDLYLSSDSNSQKNMMDEIFCGLQEIEQTCNFKQLMVDSNHDFLVGHDEEVDSFM 693

Query: 546  VLEV-----SLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSLPK 710
             L+V       ++ A L++ S+ +F++VFRD+QNL+Y+YA++DNSLL M KAGSKG+L K
Sbjct: 694  ALDVEQMCYEKQRSAALSQASVDSFKQVFRDIQNLLYKYANKDNSLLTMFKAGSKGNLLK 753

Query: 711  LVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPES---NIPYAIVEN 881
            LVQ  LCLGLQ+S VPLSFR P +LSCA WN+QK  GL Q V +T ES    IPYA+VE+
Sbjct: 754  LVQHSLCLGLQHSLVPLSFRFPHQLSCAAWNNQKSHGLTQKVDDTAESAKNYIPYAVVES 813

Query: 882  SFINGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGSQI 1061
            SF+ GLNP+E FVHS++ RDSSF  NADLPGTL+R+LMF+MRDL  AYDGTVRN+YG  +
Sbjct: 814  SFMTGLNPLESFVHSVTSRDSSFSDNADLPGTLSRRLMFFMRDLYTAYDGTVRNSYGDLV 873

Query: 1062 IQFSYGND---------TSGFCDENVYRCDEF-GSPVGSLAACSISEAAYSALDQPISKL 1211
            +QF Y  D           G   E+    +   G PVGSL+AC+ISEAAYSALDQP+S L
Sbjct: 874  VQFCYDIDKDASSPTSCAHGLISESSTIPEGIGGQPVGSLSACAISEAAYSALDQPVSLL 933

Query: 1212 ETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVV 1391
            ETSPLLNLK+V+E G K++ +D+T++LFLS KL R  +G EYAAL VK+HLE++ FS++V
Sbjct: 934  ETSPLLNLKRVVECGSKRSNADQTMTLFLSNKLGRKRHGSEYAALEVKNHLERLTFSDIV 993

Query: 1392 STVMIIYSQQNCHGKLCSPWICHFHVCKDEEKRTE 1496
            +TV II+S Q       +PW+CHFHVCKD  KR +
Sbjct: 994  TTVSIIFSPQMYRENHFTPWVCHFHVCKDTMKRRQ 1028


>ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1438

 Score =  545 bits (1403), Expect = e-152
 Identities = 282/515 (54%), Positives = 369/515 (71%), Gaps = 19/515 (3%)
 Frame = +3

Query: 3    FYLLREKGVFLNRFQMQQLEMLCPRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDFS 182
            FYL+ E G  +N+FQMQQL MLCP +L  PA++K P   S  WT KQ++SM LP  FD++
Sbjct: 490  FYLITEDGTLMNKFQMQQLNMLCPHELPLPAVIKHPSGNSVSWTAKQIVSMFLPADFDYA 549

Query: 183  FPSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISMR 362
            FPSNGVYI++GE+++SS  S+WL+DT GN+F +L      + LDI FSAQ VL EW+SMR
Sbjct: 550  FPSNGVYISNGELIASSEGSSWLRDTSGNLFQSLTEHCHGQVLDIFFSAQGVLCEWLSMR 609

Query: 363  GFSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENENA 542
            G SVSL D YL+SD+ SRK +ME + YGLQE E    I+QL++D   D L+ Y DEN++ 
Sbjct: 610  GLSVSLSDLYLASDTCSRKNLMEEIFYGLQEAEEACTIRQLMLDSFQDFLMGY-DENKSQ 668

Query: 543  EVLEVSLE-------KKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGS 701
              L    E       K A L++V++ A +E FRD+QNL Y+YA  DNSLLAM KAGSKG+
Sbjct: 669  SPLTFGSEHFCYQKQKTAALSQVTVDAIKEGFRDVQNLAYKYAGVDNSLLAMFKAGSKGN 728

Query: 702  LPKLVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNV---HNTPESNIPYAI 872
            + KLVQ  +CLGLQ+S VPLSF+ P +LSC  WN QK  G+VQ V     + ES IP A+
Sbjct: 729  MLKLVQHCMCLGLQHSLVPLSFKFPNQLSCDAWNDQKARGIVQEVGRNFESIESYIPSAV 788

Query: 873  VENSFINGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYG 1052
            V++SF+ GLNP+ECFVHS++ RD SF +NA+LPGTL RKLM++MRDL  AYDGTVRNAYG
Sbjct: 789  VKSSFLTGLNPVECFVHSVTSRDGSFSNNAELPGTLNRKLMYFMRDLHTAYDGTVRNAYG 848

Query: 1053 SQIIQFSYGND---------TSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPIS 1205
            +Q+IQFSY  D         T+    ++V  C     PVG+L+AC+ISEAAYSALDQP+S
Sbjct: 849  NQLIQFSYDIDEGISTADSTTNSSYAKSVINCGG-SQPVGALSACAISEAAYSALDQPVS 907

Query: 1206 KLETSPLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSN 1385
             LE SPLLNLK +LE G K++++ +T+SLFLS KL+R  +G+EY AL VK+HLE + FS+
Sbjct: 908  LLEASPLLNLKNILECGSKRSSAKQTMSLFLSDKLDRHRHGFEYGALEVKNHLEGLNFSD 967

Query: 1386 VVSTVMIIYSQQNCHGKLCSPWICHFHVCKDEEKR 1490
            +VSTVMI++S Q+      SPW+ HFH+ K+  +R
Sbjct: 968  IVSTVMIMFSSQSGSKMRFSPWVSHFHISKEIVRR 1002


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Solanum tuberosum]
          Length = 1233

 Score =  544 bits (1401), Expect = e-152
 Identities = 284/508 (55%), Positives = 365/508 (71%), Gaps = 14/508 (2%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLCPRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDFSF 185
            +L+ E GVFL+RFQMQQL+M CPRQL   AI+KAPP     WTGKQL S+LLP   ++ F
Sbjct: 273  HLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNLCYWTGKQLFSLLLPSDLEYVF 332

Query: 186  PSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISMRG 365
            PSNGV I++GEI++SS  S+WL+D   N+F +LV+ +G   LD+L++AQ VL EW+SMRG
Sbjct: 333  PSNGVCISEGEIVTSSGGSSWLRDVSDNLFYSLVKHHGGDTLDLLYAAQTVLCEWLSMRG 392

Query: 366  FSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENENA- 542
             SVSL D Y+SSDSYSR+ M++ V  GLQE ER   I+ L++    D L    +E++N+ 
Sbjct: 393  LSVSLSDLYISSDSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGSLEESKNSM 452

Query: 543  ----EVLEVSLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSLPK 710
                E + +  +K A L++ S  AF++VFRD+QNLVY YAS DNSLLAM+KAGSKG+L K
Sbjct: 453  GFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLK 512

Query: 711  LVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPE---SNIPYAIVEN 881
            LVQ  +CLGLQ S VP+SFR+P +LSC  WN+ K   +++  H  PE   S IP A+V++
Sbjct: 513  LVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKS 572

Query: 882  SFINGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGSQI 1061
            SF+ GLNP+ECFVHSL+ RDSSF  +AD+ GTL RKLMF+MRDL V YDGTVRNAYG+QI
Sbjct: 573  SFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQI 632

Query: 1062 IQFSYGN-----DTSGFCDE-NVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETSP 1223
            +QFSY        T G  D    +     G PVGSLAAC+ISEAAYSALDQP+S LE+SP
Sbjct: 633  VQFSYYEAEKIASTKGTGDALESHNHAIGGHPVGSLAACAISEAAYSALDQPVSALESSP 692

Query: 1224 LLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVM 1403
            LLNLKK+LESG    + ++T S+FLSK+L RW +G+EY AL VK HLE++L S VVSTVM
Sbjct: 693  LLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVM 752

Query: 1404 IIYSQQNCHGKLCSPWICHFHVCKDEEK 1487
            I +S +        PW+CHFH+ K+  K
Sbjct: 753  ICFSPETRKSTHNCPWVCHFHIDKENVK 780


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Solanum tuberosum]
          Length = 1446

 Score =  544 bits (1401), Expect = e-152
 Identities = 284/508 (55%), Positives = 365/508 (71%), Gaps = 14/508 (2%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLCPRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDFSF 185
            +L+ E GVFL+RFQMQQL+M CPRQL   AI+KAPP     WTGKQL S+LLP   ++ F
Sbjct: 486  HLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNLCYWTGKQLFSLLLPSDLEYVF 545

Query: 186  PSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISMRG 365
            PSNGV I++GEI++SS  S+WL+D   N+F +LV+ +G   LD+L++AQ VL EW+SMRG
Sbjct: 546  PSNGVCISEGEIVTSSGGSSWLRDVSDNLFYSLVKHHGGDTLDLLYAAQTVLCEWLSMRG 605

Query: 366  FSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENENA- 542
             SVSL D Y+SSDSYSR+ M++ V  GLQE ER   I+ L++    D L    +E++N+ 
Sbjct: 606  LSVSLSDLYISSDSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGSLEESKNSM 665

Query: 543  ----EVLEVSLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSLPK 710
                E + +  +K A L++ S  AF++VFRD+QNLVY YAS DNSLLAM+KAGSKG+L K
Sbjct: 666  GFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLK 725

Query: 711  LVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPE---SNIPYAIVEN 881
            LVQ  +CLGLQ S VP+SFR+P +LSC  WN+ K   +++  H  PE   S IP A+V++
Sbjct: 726  LVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKS 785

Query: 882  SFINGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGSQI 1061
            SF+ GLNP+ECFVHSL+ RDSSF  +AD+ GTL RKLMF+MRDL V YDGTVRNAYG+QI
Sbjct: 786  SFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQI 845

Query: 1062 IQFSYGN-----DTSGFCDE-NVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETSP 1223
            +QFSY        T G  D    +     G PVGSLAAC+ISEAAYSALDQP+S LE+SP
Sbjct: 846  VQFSYYEAEKIASTKGTGDALESHNHAIGGHPVGSLAACAISEAAYSALDQPVSALESSP 905

Query: 1224 LLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVM 1403
            LLNLKK+LESG    + ++T S+FLSK+L RW +G+EY AL VK HLE++L S VVSTVM
Sbjct: 906  LLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVM 965

Query: 1404 IIYSQQNCHGKLCSPWICHFHVCKDEEK 1487
            I +S +        PW+CHFH+ K+  K
Sbjct: 966  ICFSPETRKSTHNCPWVCHFHIDKENVK 993


>ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
            [Cicer arietinum]
          Length = 1474

 Score =  541 bits (1395), Expect = e-151
 Identities = 275/500 (55%), Positives = 362/500 (72%), Gaps = 5/500 (1%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLCPRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDFSF 185
            YLL E GV LN +QMQQL+M C R+L+ PAI+KAP   +  W+GKQL SML+P  FD++F
Sbjct: 507  YLLLEDGVLLNVYQMQQLQMHCSRKLIPPAIVKAPSSNTSCWSGKQLFSMLMPSSFDYAF 566

Query: 186  PSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISMRG 365
            PS+GV++ DGE++S S  S WL+D++ N+F +LV  +  K LDIL  AQ+ L EW+SM G
Sbjct: 567  PSDGVFVCDGELISCSEASGWLRDSDNNVFQSLVEHFQGKTLDILHGAQKALCEWLSMTG 626

Query: 366  FSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENENAE 545
            FSVSL D YLSSDSY+RK M+E +SYGLQE E+     QL+VD   D L     E EN  
Sbjct: 627  FSVSLSDLYLSSDSYARKNMIEEISYGLQEAEQACDFNQLLVDYCCDFLSGSLQEIENLV 686

Query: 546  VLEVSL-----EKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSLPK 710
             ++V       +  A L++ S+ AFR+VFR++Q+L  +YA +DN+ LAM KAGSKG+L K
Sbjct: 687  AVDVDCLNYERQISAALSQASVDAFRQVFRNIQSLADKYACKDNAFLAMFKAGSKGNLLK 746

Query: 711  LVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPESNIPYAIVENSFI 890
            LVQ  +CLGLQ+S V L ++IP KLSCA WN QK   +  +     +S IPYA+VE+SF+
Sbjct: 747  LVQHSMCLGLQHSLVRLPYKIPRKLSCAAWNSQKGMQIFSDTVEPVQSYIPYAVVESSFL 806

Query: 891  NGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGSQIIQF 1070
             GLNP+ECFVHS++ RDSSF  NADLPGTLTR+LMF+MRD+  AYDGTVRN YG+Q+IQF
Sbjct: 807  TGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDAYDGTVRNLYGNQLIQF 866

Query: 1071 SYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETSPLLNLKKVLE 1250
            SY  +    CD +       G PVG+L+AC++SEAAYSAL QPIS LE SPLLNLK VLE
Sbjct: 867  SYDAEEDSSCDSHFREDTIGGEPVGTLSACAVSEAAYSALSQPISLLEASPLLNLKYVLE 926

Query: 1251 SGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVMIIYSQQNCH 1430
             G +K   D+T+SLFLS+K+ +   G+EYAAL VK++LE+++FS++VSTVMII++ Q+  
Sbjct: 927  CGSRKRGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERLMFSDIVSTVMIIFTPQSRS 986

Query: 1431 GKLCSPWICHFHVCKDEEKR 1490
             +  SPW+CHFH+ K+   R
Sbjct: 987  LEKYSPWVCHFHLDKENVTR 1006


>ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
            [Cicer arietinum] gi|502160026|ref|XP_004511608.1|
            PREDICTED: DNA-directed RNA polymerase D subunit 1-like
            isoform X2 [Cicer arietinum]
            gi|502160029|ref|XP_004511609.1| PREDICTED: DNA-directed
            RNA polymerase D subunit 1-like isoform X3 [Cicer
            arietinum] gi|502160032|ref|XP_004511610.1| PREDICTED:
            DNA-directed RNA polymerase D subunit 1-like isoform X4
            [Cicer arietinum]
          Length = 1475

 Score =  541 bits (1395), Expect = e-151
 Identities = 275/500 (55%), Positives = 362/500 (72%), Gaps = 5/500 (1%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLCPRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDFSF 185
            YLL E GV LN +QMQQL+M C R+L+ PAI+KAP   +  W+GKQL SML+P  FD++F
Sbjct: 507  YLLLEDGVLLNVYQMQQLQMHCSRKLIPPAIVKAPSSNTSCWSGKQLFSMLMPSSFDYAF 566

Query: 186  PSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISMRG 365
            PS+GV++ DGE++S S  S WL+D++ N+F +LV  +  K LDIL  AQ+ L EW+SM G
Sbjct: 567  PSDGVFVCDGELISCSEASGWLRDSDNNVFQSLVEHFQGKTLDILHGAQKALCEWLSMTG 626

Query: 366  FSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENENAE 545
            FSVSL D YLSSDSY+RK M+E +SYGLQE E+     QL+VD   D L     E EN  
Sbjct: 627  FSVSLSDLYLSSDSYARKNMIEEISYGLQEAEQACDFNQLLVDYCCDFLSGSLQEIENLV 686

Query: 546  VLEVSL-----EKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSLPK 710
             ++V       +  A L++ S+ AFR+VFR++Q+L  +YA +DN+ LAM KAGSKG+L K
Sbjct: 687  AVDVDCLNYERQISAALSQASVDAFRQVFRNIQSLADKYACKDNAFLAMFKAGSKGNLLK 746

Query: 711  LVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPESNIPYAIVENSFI 890
            LVQ  +CLGLQ+S V L ++IP KLSCA WN QK   +  +     +S IPYA+VE+SF+
Sbjct: 747  LVQHSMCLGLQHSLVRLPYKIPRKLSCAAWNSQKGMQIFSDTVEPVQSYIPYAVVESSFL 806

Query: 891  NGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGSQIIQF 1070
             GLNP+ECFVHS++ RDSSF  NADLPGTLTR+LMF+MRD+  AYDGTVRN YG+Q+IQF
Sbjct: 807  TGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDAYDGTVRNLYGNQLIQF 866

Query: 1071 SYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETSPLLNLKKVLE 1250
            SY  +    CD +       G PVG+L+AC++SEAAYSAL QPIS LE SPLLNLK VLE
Sbjct: 867  SYDAEEDSSCDSHFREDTIGGEPVGTLSACAVSEAAYSALSQPISLLEASPLLNLKYVLE 926

Query: 1251 SGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVMIIYSQQNCH 1430
             G +K   D+T+SLFLS+K+ +   G+EYAAL VK++LE+++FS++VSTVMII++ Q+  
Sbjct: 927  CGSRKRGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERLMFSDIVSTVMIIFTPQSRS 986

Query: 1431 GKLCSPWICHFHVCKDEEKR 1490
             +  SPW+CHFH+ K+   R
Sbjct: 987  LEKYSPWVCHFHLDKENVTR 1006


>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum
            lycopersicum]
          Length = 1446

 Score =  540 bits (1390), Expect = e-151
 Identities = 282/509 (55%), Positives = 364/509 (71%), Gaps = 15/509 (2%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLCPRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDFSF 185
            +L+ E GVFL+RFQMQQL+M CPRQL   AI+KAPP     WTGKQL S+LLP   ++ F
Sbjct: 486  HLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNICYWTGKQLFSLLLPSDLEYVF 545

Query: 186  PSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISMRG 365
            PSNGV I++GEI++SS  S+WL+D   N+F +LV+  G   LD+L++AQ VL EW+SMRG
Sbjct: 546  PSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNGGDTLDLLYAAQTVLCEWLSMRG 605

Query: 366  FSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENENA- 542
             SVSL D Y+S+DSYSR+ M++ V  GLQE ER   I+ L++    D L    +E++N+ 
Sbjct: 606  LSVSLSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGNLEESKNSM 665

Query: 543  ----EVLEVSLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSLPK 710
                E + +  +K A L++ S  AF++VFRD+QNLVY YAS DNSLLAM+KAGSKG+L K
Sbjct: 666  GFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLK 725

Query: 711  LVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPE---SNIPYAIVEN 881
            LVQ  +CLGLQ S VP+SFR+P +LSC  WN+ K   +++  H  PE   S IP A+V++
Sbjct: 726  LVQHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKS 785

Query: 882  SFINGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGSQI 1061
            SF+ GLNP+ECFVHSL+ RDSSF  +AD+ GTL RKLMF+MRDL V YDGTVRNAYG+QI
Sbjct: 786  SFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQI 845

Query: 1062 IQFSY-------GNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETS 1220
            +QFSY           +G   E+ +     G PVGSLAAC+ISEAAY ALDQP+S LE+S
Sbjct: 846  VQFSYYEAEQIASTKVTGEALES-HNHAIGGHPVGSLAACAISEAAYCALDQPVSALESS 904

Query: 1221 PLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTV 1400
            PLLNLKK+LESG    T ++T S+FLSK+L RW +G+EY AL VK HLE++L S VVSTV
Sbjct: 905  PLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTV 964

Query: 1401 MIIYSQQNCHGKLCSPWICHFHVCKDEEK 1487
            MI +S +        PW+CHFH+ K+  K
Sbjct: 965  MICFSPETRKSTHNCPWVCHFHIDKENVK 993


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  540 bits (1390), Expect = e-151
 Identities = 282/509 (55%), Positives = 364/509 (71%), Gaps = 15/509 (2%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLCPRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDFSF 185
            +L+ E GVFL+RFQMQQL+M CPRQL   AI+KAPP     WTGKQL S+LLP   ++ F
Sbjct: 178  HLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNICYWTGKQLFSLLLPSDLEYVF 237

Query: 186  PSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISMRG 365
            PSNGV I++GEI++SS  S+WL+D   N+F +LV+  G   LD+L++AQ VL EW+SMRG
Sbjct: 238  PSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNGGDTLDLLYAAQTVLCEWLSMRG 297

Query: 366  FSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENENA- 542
             SVSL D Y+S+DSYSR+ M++ V  GLQE ER   I+ L++    D L    +E++N+ 
Sbjct: 298  LSVSLSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGNLEESKNSM 357

Query: 543  ----EVLEVSLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSLPK 710
                E + +  +K A L++ S  AF++VFRD+QNLVY YAS DNSLLAM+KAGSKG+L K
Sbjct: 358  GFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLK 417

Query: 711  LVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPE---SNIPYAIVEN 881
            LVQ  +CLGLQ S VP+SFR+P +LSC  WN+ K   +++  H  PE   S IP A+V++
Sbjct: 418  LVQHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKS 477

Query: 882  SFINGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGSQI 1061
            SF+ GLNP+ECFVHSL+ RDSSF  +AD+ GTL RKLMF+MRDL V YDGTVRNAYG+QI
Sbjct: 478  SFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQI 537

Query: 1062 IQFSY-------GNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETS 1220
            +QFSY           +G   E+ +     G PVGSLAAC+ISEAAY ALDQP+S LE+S
Sbjct: 538  VQFSYYEAEQIASTKVTGEALES-HNHAIGGHPVGSLAACAISEAAYCALDQPVSALESS 596

Query: 1221 PLLNLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTV 1400
            PLLNLKK+LESG    T ++T S+FLSK+L RW +G+EY AL VK HLE++L S VVSTV
Sbjct: 597  PLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTV 656

Query: 1401 MIIYSQQNCHGKLCSPWICHFHVCKDEEK 1487
            MI +S +        PW+CHFH+ K+  K
Sbjct: 657  MICFSPETRKSTHNCPWVCHFHIDKENVK 685


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score =  534 bits (1375), Expect = e-149
 Identities = 276/503 (54%), Positives = 358/503 (71%), Gaps = 8/503 (1%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLCPRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDFSF 185
            +LL E GV  N +Q+QQLEMLC ++L  PAI KAP   +P W+GKQL SMLLP  FD++F
Sbjct: 664  HLLLEDGVGFNIYQVQQLEMLCNKELTSPAIFKAPSSNTPFWSGKQLFSMLLPSKFDYAF 723

Query: 186  PSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISMRG 365
            PSN V++ DGE++S S  S WL+D+E N+F +LV  +  K LD+L  AQ+ L EW+SM G
Sbjct: 724  PSNDVFVKDGELISCSESSGWLRDSENNVFQSLVEHFQGKILDVLHGAQKALCEWLSMTG 783

Query: 366  FSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENENAE 545
            FSVSL D YLSSDSY+RK MME +SYGL+  E+     QL+VD   D L    +ENE   
Sbjct: 784  FSVSLSDLYLSSDSYARKNMMEEISYGLRVAEQACDFNQLLVDHYSDFLSASPEENEKFV 843

Query: 546  VLEV-----SLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSLPK 710
             ++V       +  A  ++ S+ AFR VFR++Q+L  ++A +DNS LAM KAGSKG+L K
Sbjct: 844  TVDVDRLNHERQISAAQSQASVDAFRHVFRNIQSLADKHACKDNSFLAMFKAGSKGNLLK 903

Query: 711  LVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPE---SNIPYAIVEN 881
            LVQ  +CLGLQ+S V LS+RIP +LSCA WN QK    ++   +T E   S I +A+VE+
Sbjct: 904  LVQHSMCLGLQHSLVRLSYRIPRELSCAGWNSQKGLHSMEMSSDTLEPKQSYIAHAVVES 963

Query: 882  SFINGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGSQI 1061
            SF+ GLNP+ECFVHS++ RDSSF  NADLPGTLTR+LMF+MRD+  AYDGTVRN YG+Q+
Sbjct: 964  SFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDAYDGTVRNLYGNQL 1023

Query: 1062 IQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETSPLLNLKK 1241
            IQFSY  +    CD         G PVG+L+AC++SEAAYSAL QPIS LE SPLLNLK 
Sbjct: 1024 IQFSYDAEEDSSCDSYFREDIIGGEPVGALSACAVSEAAYSALSQPISLLEASPLLNLKN 1083

Query: 1242 VLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVMIIYSQQ 1421
            VLE G +K   D+T+SLFLS+K+ +   G+EYAAL VK++LE+ +FSN+VSTVMII++ Q
Sbjct: 1084 VLECGSRKKGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERYMFSNIVSTVMIIFTPQ 1143

Query: 1422 NCHGKLCSPWICHFHVCKDEEKR 1490
            +C     SPW+CHFH+ K+   R
Sbjct: 1144 HCSQVKYSPWVCHFHLDKENVTR 1166


>ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Glycine
            max]
          Length = 1369

 Score =  533 bits (1373), Expect = e-149
 Identities = 278/502 (55%), Positives = 366/502 (72%), Gaps = 11/502 (2%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLC--PRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDF 179
            YLL E GV LN +QMQQL+ML    ++L+ PA++KAP   S +W+GKQ+ SMLLP  FD+
Sbjct: 410  YLLMEDGVLLNVYQMQQLQMLSISDKRLIPPAVVKAPSSNSSLWSGKQIFSMLLPYDFDY 469

Query: 180  SFPSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISM 359
            SFPS+GV ++DGE++SSS  S WL+D++ N+F +LV  Y  K L+ L++AQ+VL EW+SM
Sbjct: 470  SFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLYTAQKVLCEWLSM 529

Query: 360  RGFSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENEN 539
             GFSVSL D YLSSDSY+RK M+E + YGLQ+ E+    KQL++D   D L     E+EN
Sbjct: 530  TGFSVSLSDLYLSSDSYARKNMIEEIFYGLQDAEQACNFKQLLLDCYCDFLSGSIQESEN 589

Query: 540  A-----EVLEVSLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSL 704
            A     + L    +  A L++ S+ AFR+VFR++Q+L  +YA +DN+ LAM KAGSKG+L
Sbjct: 590  AITVDADRLNYERQISAALSQASVDAFRQVFRNIQSLADKYACKDNAFLAMFKAGSKGNL 649

Query: 705  PKLVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPES---NIPYAIV 875
             KLVQ  +CLG+Q S V LS+R+P  LSCA WN QK    +Q    T ES    IPYA+V
Sbjct: 650  LKLVQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKWLDSIQMSSGTLESVQSYIPYAVV 709

Query: 876  ENSFINGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGS 1055
            E+SF+ GLNP+ECFVHS++ RDSSF  +ADLPGTLTR+LMF+MRDL  AYDGTVRN YG+
Sbjct: 710  ESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLHDAYDGTVRNLYGN 769

Query: 1056 QIIQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETSPLLNL 1235
            Q+IQFSY  +    CD+        G PVG+++AC+ISEAAYSAL QP+S LETSPLLNL
Sbjct: 770  QLIQFSYDIEEDSSCDKGFQEYAIGGEPVGAISACAISEAAYSALGQPVSLLETSPLLNL 829

Query: 1236 KKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVMIIYS 1415
            K VLE G +K   D+T+SLFLS+KL +  +G+EYAAL VK++LE++LFSN+VSTVMII++
Sbjct: 830  KNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSTVMIIFT 889

Query: 1416 -QQNCHGKLCSPWICHFHVCKD 1478
                   +  SPW+CHFH+ K+
Sbjct: 890  PHDGSSQEKYSPWVCHFHLDKE 911


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  532 bits (1370), Expect = e-148
 Identities = 285/507 (56%), Positives = 364/507 (71%), Gaps = 12/507 (2%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLCPRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDFSF 185
            +L+ E GV LN FQMQQL+ML   QLL PAI+K+P  ++  WTGKQL S+LLPP FD+S 
Sbjct: 512  HLILEDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLFSILLPPDFDYSS 571

Query: 186  PSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISMRG 365
            PS+ V+I  GE++SS   S WL+D+  N+F  L+     K LD L  AQ VL EW+S RG
Sbjct: 572  PSHNVFIEKGELISSE-GSYWLRDSGRNLFQALIEHCEGKTLDYLRDAQGVLCEWLSTRG 630

Query: 366  FSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENENAE 545
             SVSL D YLS DSYS + MM+ +  GLQE E T  +KQL+VD   + L+  G++ +N  
Sbjct: 631  LSVSLSDLYLSVDSYSHENMMDDIFCGLQEAEETCNLKQLMVDSHKEILI--GNDEDNQH 688

Query: 546  VLEVSLE-------KKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSL 704
            +L +++E       K A LN+ S+ AF++VFRD+QNLVY+Y+ +DNSLL M KAGSKG+L
Sbjct: 689  LLSIAVERLIYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNSLLTMFKAGSKGNL 748

Query: 705  PKLVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQN--VHNTPESNIPYAIVE 878
             KLVQ  +CLGLQ+S V LSF +P KLSCA WN QK+   +Q   + +  +S IPYA+VE
Sbjct: 749  MKLVQHSMCLGLQHSLVTLSFSLPHKLSCAAWNSQKMPRYIQKDGLPDRTQSFIPYAVVE 808

Query: 879  NSFINGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGSQ 1058
            NSF++GLNP ECF HS++ RDSSF  NA++PGTLTRKL F MRD+  AYDGTVRNAYG+Q
Sbjct: 809  NSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYTAYDGTVRNAYGNQ 868

Query: 1059 IIQFSYGND--TSGFCDENVYRCDEFGS-PVGSLAACSISEAAYSALDQPISKLETSPLL 1229
            ++QF Y  D  TS    EN  R    G  PVGSLAAC+ISEAAYSALDQPIS LE SPLL
Sbjct: 869  LVQFCYDIDRPTSESESENNNRDRGIGGHPVGSLAACAISEAAYSALDQPISLLEASPLL 928

Query: 1230 NLKKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVMII 1409
            NLK+VLE G K+ ++ +T SLFLS+KL +  YG+EY AL VK+HLE+V+F ++VS+VMII
Sbjct: 929  NLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVKNHLERVMFKDIVSSVMII 988

Query: 1410 YSQQNCHGKLCSPWICHFHVCKDEEKR 1490
            +S      K  SPW+CHFHVCK+  K+
Sbjct: 989  FSPLPSRKKHFSPWVCHFHVCKEILKK 1015


>ref|XP_006440521.1| hypothetical protein CICLE_v10018489mg [Citrus clementina]
            gi|557542783|gb|ESR53761.1| hypothetical protein
            CICLE_v10018489mg [Citrus clementina]
          Length = 1443

 Score =  526 bits (1354), Expect = e-146
 Identities = 278/501 (55%), Positives = 355/501 (70%), Gaps = 5/501 (0%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLCPRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDFSF 185
            +LL E GV L+  QMQQL+M CP + L P I K    +  +W+GKQL SMLLPP F+++F
Sbjct: 503  HLLMEDGVLLSHLQMQQLQMFCPHRFLSPDIFKI--SKDSVWSGKQLFSMLLPPDFEYTF 560

Query: 186  PSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISMRG 365
            PS  VYI+ G+++S+   S+WL+D EGN+F  L++RY  K LD L++AQEVL EW+S+RG
Sbjct: 561  PSKDVYISGGKLISAE-GSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRG 619

Query: 366  FSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENEN-- 539
             +VSL D YL+S S SRK +M+ + YGL+E + T   +QL+VD  M+ L+   D      
Sbjct: 620  MTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRS 679

Query: 540  --AEVLEVSLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSLPKL 713
               E L    ++ A L++ S+ AF+ VF D+QNL Y+Y S+DNSLL M KAGSKG+L KL
Sbjct: 680  LQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLGMFKAGSKGNLLKL 739

Query: 714  VQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPESNIPYAIVENSFIN 893
            VQ  LCLGLQ+S  PLSFR P +LSCA WN  +     +      +S IP A+VENSF+ 
Sbjct: 740  VQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTE----CAKSYIPSAVVENSFLT 795

Query: 894  GLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGSQIIQFS 1073
            GLNP+ECF+HS++ RDSSF  NADLPGTLTR+LMF+MRDL  AYDGTVRNAYG+QI+QFS
Sbjct: 796  GLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFS 855

Query: 1074 YGNDTSGFCDENVYRCDEFGS-PVGSLAACSISEAAYSALDQPISKLETSPLLNLKKVLE 1250
            Y  + +           E G  PVGSL+AC+ISEAAYSALDQPIS LETSPLLNLK VLE
Sbjct: 856  YNIEGTST------PTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLE 909

Query: 1251 SGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVMIIYSQQNCH 1430
             G KK+ +D+T+SLFLS KL +  +G+EY AL VK+HLE ++ S++VST MIIYS Q   
Sbjct: 910  CGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGS 969

Query: 1431 GKLCSPWICHFHVCKDEEKRT 1493
             K  SPWICHFHV K+  KRT
Sbjct: 970  MKHFSPWICHFHVRKEIMKRT 990


>ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X4
            [Glycine max]
          Length = 1381

 Score =  525 bits (1352), Expect = e-146
 Identities = 276/502 (54%), Positives = 364/502 (72%), Gaps = 11/502 (2%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLC--PRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDF 179
            YLL E GV LN +QMQQL+ML    ++L+ PA++KAP   S +W GKQL SMLLP  FD+
Sbjct: 419  YLLMEDGVLLNVYQMQQLQMLSISNKRLIPPAVVKAPSSNSSLWNGKQLFSMLLPYDFDY 478

Query: 180  SFPSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISM 359
            SFPS+GV ++DGE++SSS  S WL+D++ N+F +LV  Y  K L+ L++AQ+VL EW+SM
Sbjct: 479  SFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLYAAQKVLCEWLSM 538

Query: 360  RGFSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENEN 539
             GFSVSL D YLSSDSY+R+ M+E + YGLQ+ ER    KQL++D   D L     E+EN
Sbjct: 539  TGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQLLLDYYCDFLSGSLQESEN 598

Query: 540  A-----EVLEVSLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSL 704
            A     + L    +  A L++ S+ AFR+VFR++Q+L  +YA + NS LAM KAGSKG+L
Sbjct: 599  AITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSFLAMFKAGSKGNL 658

Query: 705  PKLVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPES---NIPYAIV 875
             KLVQ  +CLG+Q S V LS+R+P  LSCA WN QK    +Q    T ES    IPYA+V
Sbjct: 659  LKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTLESVQSYIPYAVV 718

Query: 876  ENSFINGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGS 1055
            E+SF+ GLNP+ECFVHS++ RDSSF  +ADLPGTLTR+LMF+MRDL  AYDGTVRN YG+
Sbjct: 719  ESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGN 778

Query: 1056 QIIQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETSPLLNL 1235
            Q+IQFSY  +    C++   +    G  VG+++AC+ISEAAYSAL QP+S LETSPLLNL
Sbjct: 779  QLIQFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAAYSALGQPVSLLETSPLLNL 838

Query: 1236 KKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVMIIYS 1415
            K VLE G +K   D+T+SLFLS+KL +  +G+EYAAL VK++LE++LFSN+VS VMII++
Sbjct: 839  KNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSKVMIIFT 898

Query: 1416 QQNCHG-KLCSPWICHFHVCKD 1478
              +    +  SPW+CHFH+ K+
Sbjct: 899  PHDSRSQEKYSPWVCHFHLDKE 920


>ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
            [Glycine max]
          Length = 1455

 Score =  525 bits (1352), Expect = e-146
 Identities = 276/502 (54%), Positives = 364/502 (72%), Gaps = 11/502 (2%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLC--PRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDF 179
            YLL E GV LN +QMQQL+ML    ++L+ PA++KAP   S +W GKQL SMLLP  FD+
Sbjct: 496  YLLMEDGVLLNVYQMQQLQMLSISNKRLIPPAVVKAPSSNSSLWNGKQLFSMLLPYDFDY 555

Query: 180  SFPSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISM 359
            SFPS+GV ++DGE++SSS  S WL+D++ N+F +LV  Y  K L+ L++AQ+VL EW+SM
Sbjct: 556  SFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLYAAQKVLCEWLSM 615

Query: 360  RGFSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENEN 539
             GFSVSL D YLSSDSY+R+ M+E + YGLQ+ ER    KQL++D   D L     E+EN
Sbjct: 616  TGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQLLLDYYCDFLSGSLQESEN 675

Query: 540  A-----EVLEVSLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSL 704
            A     + L    +  A L++ S+ AFR+VFR++Q+L  +YA + NS LAM KAGSKG+L
Sbjct: 676  AITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSFLAMFKAGSKGNL 735

Query: 705  PKLVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPES---NIPYAIV 875
             KLVQ  +CLG+Q S V LS+R+P  LSCA WN QK    +Q    T ES    IPYA+V
Sbjct: 736  LKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTLESVQSYIPYAVV 795

Query: 876  ENSFINGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGS 1055
            E+SF+ GLNP+ECFVHS++ RDSSF  +ADLPGTLTR+LMF+MRDL  AYDGTVRN YG+
Sbjct: 796  ESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGN 855

Query: 1056 QIIQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETSPLLNL 1235
            Q+IQFSY  +    C++   +    G  VG+++AC+ISEAAYSAL QP+S LETSPLLNL
Sbjct: 856  QLIQFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAAYSALGQPVSLLETSPLLNL 915

Query: 1236 KKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVMIIYS 1415
            K VLE G +K   D+T+SLFLS+KL +  +G+EYAAL VK++LE++LFSN+VS VMII++
Sbjct: 916  KNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSKVMIIFT 975

Query: 1416 QQNCHG-KLCSPWICHFHVCKD 1478
              +    +  SPW+CHFH+ K+
Sbjct: 976  PHDSRSQEKYSPWVCHFHLDKE 997


>ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Glycine max]
          Length = 1457

 Score =  525 bits (1352), Expect = e-146
 Identities = 276/502 (54%), Positives = 364/502 (72%), Gaps = 11/502 (2%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLC--PRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDF 179
            YLL E GV LN +QMQQL+ML    ++L+ PA++KAP   S +W GKQL SMLLP  FD+
Sbjct: 496  YLLMEDGVLLNVYQMQQLQMLSISNKRLIPPAVVKAPSSNSSLWNGKQLFSMLLPYDFDY 555

Query: 180  SFPSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISM 359
            SFPS+GV ++DGE++SSS  S WL+D++ N+F +LV  Y  K L+ L++AQ+VL EW+SM
Sbjct: 556  SFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLYAAQKVLCEWLSM 615

Query: 360  RGFSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENEN 539
             GFSVSL D YLSSDSY+R+ M+E + YGLQ+ ER    KQL++D   D L     E+EN
Sbjct: 616  TGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQLLLDYYCDFLSGSLQESEN 675

Query: 540  A-----EVLEVSLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSL 704
            A     + L    +  A L++ S+ AFR+VFR++Q+L  +YA + NS LAM KAGSKG+L
Sbjct: 676  AITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSFLAMFKAGSKGNL 735

Query: 705  PKLVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPES---NIPYAIV 875
             KLVQ  +CLG+Q S V LS+R+P  LSCA WN QK    +Q    T ES    IPYA+V
Sbjct: 736  LKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTLESVQSYIPYAVV 795

Query: 876  ENSFINGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGS 1055
            E+SF+ GLNP+ECFVHS++ RDSSF  +ADLPGTLTR+LMF+MRDL  AYDGTVRN YG+
Sbjct: 796  ESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGN 855

Query: 1056 QIIQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETSPLLNL 1235
            Q+IQFSY  +    C++   +    G  VG+++AC+ISEAAYSAL QP+S LETSPLLNL
Sbjct: 856  QLIQFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAAYSALGQPVSLLETSPLLNL 915

Query: 1236 KKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVMIIYS 1415
            K VLE G +K   D+T+SLFLS+KL +  +G+EYAAL VK++LE++LFSN+VS VMII++
Sbjct: 916  KNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSKVMIIFT 975

Query: 1416 QQNCHG-KLCSPWICHFHVCKD 1478
              +    +  SPW+CHFH+ K+
Sbjct: 976  PHDSRSQEKYSPWVCHFHLDKE 997


>ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Glycine max]
          Length = 1458

 Score =  525 bits (1352), Expect = e-146
 Identities = 276/502 (54%), Positives = 364/502 (72%), Gaps = 11/502 (2%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLC--PRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDF 179
            YLL E GV LN +QMQQL+ML    ++L+ PA++KAP   S +W GKQL SMLLP  FD+
Sbjct: 496  YLLMEDGVLLNVYQMQQLQMLSISNKRLIPPAVVKAPSSNSSLWNGKQLFSMLLPYDFDY 555

Query: 180  SFPSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISM 359
            SFPS+GV ++DGE++SSS  S WL+D++ N+F +LV  Y  K L+ L++AQ+VL EW+SM
Sbjct: 556  SFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLYAAQKVLCEWLSM 615

Query: 360  RGFSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENEN 539
             GFSVSL D YLSSDSY+R+ M+E + YGLQ+ ER    KQL++D   D L     E+EN
Sbjct: 616  TGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQLLLDYYCDFLSGSLQESEN 675

Query: 540  A-----EVLEVSLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSL 704
            A     + L    +  A L++ S+ AFR+VFR++Q+L  +YA + NS LAM KAGSKG+L
Sbjct: 676  AITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSFLAMFKAGSKGNL 735

Query: 705  PKLVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPES---NIPYAIV 875
             KLVQ  +CLG+Q S V LS+R+P  LSCA WN QK    +Q    T ES    IPYA+V
Sbjct: 736  LKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTLESVQSYIPYAVV 795

Query: 876  ENSFINGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGS 1055
            E+SF+ GLNP+ECFVHS++ RDSSF  +ADLPGTLTR+LMF+MRDL  AYDGTVRN YG+
Sbjct: 796  ESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGN 855

Query: 1056 QIIQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETSPLLNL 1235
            Q+IQFSY  +    C++   +    G  VG+++AC+ISEAAYSAL QP+S LETSPLLNL
Sbjct: 856  QLIQFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAAYSALGQPVSLLETSPLLNL 915

Query: 1236 KKVLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVMIIYS 1415
            K VLE G +K   D+T+SLFLS+KL +  +G+EYAAL VK++LE++LFSN+VS VMII++
Sbjct: 916  KNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSKVMIIFT 975

Query: 1416 QQNCHG-KLCSPWICHFHVCKD 1478
              +    +  SPW+CHFH+ K+
Sbjct: 976  PHDSRSQEKYSPWVCHFHLDKE 997


>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Citrus sinensis] gi|568847098|ref|XP_006477377.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
            isoform X3 [Citrus sinensis]
            gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1-like isoform X4 [Citrus
            sinensis]
          Length = 1443

 Score =  522 bits (1344), Expect = e-145
 Identities = 275/500 (55%), Positives = 353/500 (70%), Gaps = 4/500 (0%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLCPRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDFSF 185
            +LL E  V L+  QMQQL+M CP + L P I K    +  +W+GKQL SMLLPP F+++F
Sbjct: 503  HLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKI--SKDSVWSGKQLFSMLLPPDFEYTF 560

Query: 186  PSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISMRG 365
            PS  VYI+ G+++S+   S+WL+D EGN+F  L++RY  K LD L++AQEVL EW+S+RG
Sbjct: 561  PSKDVYISGGKLISAE-GSSWLRDYEGNLFQYLIKRYQDKVLDFLYAAQEVLCEWLSVRG 619

Query: 366  FSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENEN-- 539
             +VSL D YL+S S SRK +M+ + YGL+E + T   +QL+VD  M+ L+   D      
Sbjct: 620  MTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAEDSESTRS 679

Query: 540  --AEVLEVSLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSLPKL 713
               E L    ++ A L++ S+ AF+ VF D+QNL Y+Y S+DNSLLAM KAGSKG+L KL
Sbjct: 680  LQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKL 739

Query: 714  VQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPESNIPYAIVENSFIN 893
            VQ  LCLGLQ+S  PLSFR P +LSCA WN  +     +      +S IP A+V NSF+ 
Sbjct: 740  VQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTE----CAKSYIPSAVVANSFLT 795

Query: 894  GLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGSQIIQFS 1073
            GLNP+ECF+HS++ RDSSF  NADLPGTLTR+LMF+MRDL  AYDGTVRNAYG+QI+QFS
Sbjct: 796  GLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFS 855

Query: 1074 YGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETSPLLNLKKVLES 1253
            Y  + +      +      G  VGSL+AC+ISEAAYSALDQPIS LETSPLLNLK VLE 
Sbjct: 856  YNIEGTSTPTGEIG-----GQSVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLEC 910

Query: 1254 GKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVMIIYSQQNCHG 1433
            G KK+ +D+T+SLFLS KL +  +G+EY AL VK+HLE ++ S++VST MIIYS Q    
Sbjct: 911  GSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSM 970

Query: 1434 KLCSPWICHFHVCKDEEKRT 1493
            K  SPWICHFHV K+  KRT
Sbjct: 971  KHFSPWICHFHVRKEIMKRT 990


>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Citrus sinensis]
          Length = 1481

 Score =  522 bits (1344), Expect = e-145
 Identities = 275/500 (55%), Positives = 353/500 (70%), Gaps = 4/500 (0%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLCPRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDFSF 185
            +LL E  V L+  QMQQL+M CP + L P I K    +  +W+GKQL SMLLPP F+++F
Sbjct: 541  HLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKI--SKDSVWSGKQLFSMLLPPDFEYTF 598

Query: 186  PSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISMRG 365
            PS  VYI+ G+++S+   S+WL+D EGN+F  L++RY  K LD L++AQEVL EW+S+RG
Sbjct: 599  PSKDVYISGGKLISAE-GSSWLRDYEGNLFQYLIKRYQDKVLDFLYAAQEVLCEWLSVRG 657

Query: 366  FSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENEN-- 539
             +VSL D YL+S S SRK +M+ + YGL+E + T   +QL+VD  M+ L+   D      
Sbjct: 658  MTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAEDSESTRS 717

Query: 540  --AEVLEVSLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSLPKL 713
               E L    ++ A L++ S+ AF+ VF D+QNL Y+Y S+DNSLLAM KAGSKG+L KL
Sbjct: 718  LQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKL 777

Query: 714  VQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPESNIPYAIVENSFIN 893
            VQ  LCLGLQ+S  PLSFR P +LSCA WN  +     +      +S IP A+V NSF+ 
Sbjct: 778  VQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTE----CAKSYIPSAVVANSFLT 833

Query: 894  GLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGSQIIQFS 1073
            GLNP+ECF+HS++ RDSSF  NADLPGTLTR+LMF+MRDL  AYDGTVRNAYG+QI+QFS
Sbjct: 834  GLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFS 893

Query: 1074 YGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETSPLLNLKKVLES 1253
            Y  + +      +      G  VGSL+AC+ISEAAYSALDQPIS LETSPLLNLK VLE 
Sbjct: 894  YNIEGTSTPTGEIG-----GQSVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLEC 948

Query: 1254 GKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVMIIYSQQNCHG 1433
            G KK+ +D+T+SLFLS KL +  +G+EY AL VK+HLE ++ S++VST MIIYS Q    
Sbjct: 949  GSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSM 1008

Query: 1434 KLCSPWICHFHVCKDEEKRT 1493
            K  SPWICHFHV K+  KRT
Sbjct: 1009 KHFSPWICHFHVRKEIMKRT 1028


>ref|XP_007158454.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
            gi|561031869|gb|ESW30448.1| hypothetical protein
            PHAVU_002G153700g [Phaseolus vulgaris]
          Length = 1464

 Score =  516 bits (1329), Expect = e-143
 Identities = 267/500 (53%), Positives = 355/500 (71%), Gaps = 9/500 (1%)
 Frame = +3

Query: 6    YLLREKGVFLNRFQMQQLEMLCPRQLLCPAILKAPPQQSPMWTGKQLLSMLLPPCFDFSF 185
            YLL E GV L+ +QMQQL+MLC + L  PAI+K+P   S  W+GKQL SMLLP  FD+SF
Sbjct: 494  YLLMEDGVLLDVYQMQQLQMLCNKGLAPPAIVKSPSSNSSFWSGKQLFSMLLPSDFDYSF 553

Query: 186  PSNGVYITDGEILSSSLESTWLQDTEGNIFSNLVRRYGSKALDILFSAQEVLLEWISMRG 365
            PS+GV ++DGE++SS   S WL+D++ N+F  LV  +  K+L+ LF+AQ VL EW+SM G
Sbjct: 554  PSDGVVVSDGELVSSFEASGWLRDSDCNVFQGLVEHFQGKSLNFLFAAQNVLCEWLSMTG 613

Query: 366  FSVSLHDFYLSSDSYSRKKMMEVVSYGLQEVERTGLIKQLIVDPRMDDLLRYGDENEN-- 539
            FSVSL D YLSSDSY+RK M+E + YGLQ+ E+    KQL++D   D L    +E+EN  
Sbjct: 614  FSVSLSDLYLSSDSYARKNMIEEICYGLQDAEKACNFKQLLLDCYCDFLSGNHEESENSM 673

Query: 540  ---AEVLEVSLEKKAVLNKVSIGAFREVFRDLQNLVYQYASEDNSLLAMVKAGSKGSLPK 710
               A+ L    +  A L++ S+ AFR VFR++Q+L  +YA  DN+ LAM KAGSK SL +
Sbjct: 674  TVDADSLNYERQISAALSQASVDAFRHVFRNIQSLADKYACTDNTFLAMNKAGSKSSLVR 733

Query: 711  LVQQGLCLGLQYSSVPLSFRIPCKLSCAMWNHQKVSGLVQNVHNTPES---NIPYAIVEN 881
            L Q  +CLG+Q S V LS+R+P  LSCA WN QK    +Q    T ES    IP A+V++
Sbjct: 734  LAQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKGLDSIQIYSGTLESVQSYIPCAVVKS 793

Query: 882  SFINGLNPIECFVHSLSCRDSSFGHNADLPGTLTRKLMFYMRDLVVAYDGTVRNAYGSQI 1061
            SF+ GLNP+ECFVHS++ R S F  NAD+PGTLTR+LMF+MRDL  AYDGTVRN YG+Q+
Sbjct: 794  SFLTGLNPLECFVHSVTIRASGFSENADVPGTLTRRLMFFMRDLFAAYDGTVRNLYGNQL 853

Query: 1062 IQFSYGNDTSGFCDENVYRCDEFGSPVGSLAACSISEAAYSALDQPISKLETSPLLNLKK 1241
            IQFSY  D +  CD++       G PVG+L+A ++SEA YSALDQP+S LE SPLLNLK 
Sbjct: 854  IQFSYDIDENTSCDKSFKEYAIGGEPVGALSASAVSEAGYSALDQPVSLLEASPLLNLKN 913

Query: 1242 VLESGKKKTTSDRTISLFLSKKLERWLYGYEYAALRVKSHLEKVLFSNVVSTVMIIYSQQ 1421
            VLE G +K   D+++SLF S+K+ +  +G+EYAAL VK++LE++LFS +VSTVMII++  
Sbjct: 914  VLECGSRKKNGDQSVSLFFSEKVGKQRHGFEYAALEVKNYLERLLFSKIVSTVMIIFTPP 973

Query: 1422 NCHG-KLCSPWICHFHVCKD 1478
            +    +  SPW+CHFH+ K+
Sbjct: 974  DSSSLEKYSPWVCHFHLDKE 993