BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Akebia23_contig00040461
         (602 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308709.2| hypothetical protein POPTR_0006s28060g [Popu...   283   2e-74
ref|XP_007011706.1| Pentatricopeptide repeat-containing protein,...   278   1e-72
ref|XP_006845376.1| hypothetical protein AMTR_s00019p00039970 [A...   277   2e-72
ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containi...   276   4e-72
ref|XP_006350217.1| PREDICTED: pentatricopeptide repeat-containi...   273   2e-71
ref|XP_004237112.1| PREDICTED: pentatricopeptide repeat-containi...   273   2e-71
ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   267   1e-69
ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containi...   267   1e-69
ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containi...   266   4e-69
ref|XP_002515418.1| pentatricopeptide repeat-containing protein,...   261   8e-68
gb|EXB86664.1| hypothetical protein L484_013194 [Morus notabilis]     261   1e-67
ref|XP_006483487.1| PREDICTED: pentatricopeptide repeat-containi...   260   2e-67
ref|XP_007136936.1| hypothetical protein PHAVU_009G086500g [Phas...   257   2e-66
ref|XP_004293246.1| PREDICTED: pentatricopeptide repeat-containi...   257   2e-66
ref|XP_004501390.1| PREDICTED: pentatricopeptide repeat-containi...   244   1e-62
ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arab...   243   2e-62
ref|XP_006412544.1| hypothetical protein EUTSA_v10024264mg [Eutr...   240   3e-61
ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thali...   239   3e-61
ref|XP_006282792.1| hypothetical protein CARUB_v10006400mg [Caps...   239   6e-61
ref|XP_003603286.1| Pentatricopeptide repeat-containing protein ...   238   1e-60

>ref|XP_002308709.2| hypothetical protein POPTR_0006s28060g [Populus trichocarpa]
           gi|550337245|gb|EEE92232.2| hypothetical protein
           POPTR_0006s28060g [Populus trichocarpa]
          Length = 1115

 Score =  283 bits (725), Expect = 2e-74
 Identities = 141/196 (71%), Positives = 168/196 (85%)
 Frame = +3

Query: 15  ERVVKGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQ 194
           E VV GK + G SSDEV+  L SI+DPI AL +F+SV   PN+VHTTE+CN+MLE+LR  
Sbjct: 78  ELVVNGKPRKGSSSDEVLGVLHSISDPIHALFYFKSVGELPNVVHTTETCNHMLEILRVH 137

Query: 195 RRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSY 374
           RRVE+MA VFDLMQ+ II+RN++TYLIIFK L + GG+RQAP ALE MR AGFVLNA+SY
Sbjct: 138 RRVEDMAFVFDLMQRHIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSY 197

Query: 375 NGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQS 554
           NGLIH LLQSGF  +A+EVYRRMVSEG+KPSLKT+SALMVASGK R+ +TVMGLLEEM+S
Sbjct: 198 NGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMES 257

Query: 555 LGLRPNVYTFTICIRV 602
           +GLRPN+YT+TICIRV
Sbjct: 258 MGLRPNIYTYTICIRV 273



 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 40/133 (30%), Positives = 74/133 (55%)
 Frame = +3

Query: 201  VEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNG 380
            V+     F  M K+ I+ ++++Y I+   L + G +  A    E +++AG   +  +YN 
Sbjct: 946  VDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNL 1005

Query: 381  LIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLG 560
            +I+ L +S    +A+ ++  M + GI P L TY++L++  G +   E    + EE+Q +G
Sbjct: 1006 MINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIG 1065

Query: 561  LRPNVYTFTICIR 599
            L+PNV+T+   IR
Sbjct: 1066 LKPNVFTYNALIR 1078



 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 1/160 (0%)
 Frame = +3

Query: 12   FERVVKGKTKNGLSSDEVIETLKSITDPIE-ALSFFQSVARQPNIVHTTESCNYMLELLR 188
            F+R+VK   +  L S  ++  +  I   ++ AL +F+ + +Q  +     + N M+  L 
Sbjct: 953  FKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKL-KQAGLDPDLVAYNLMINGLG 1011

Query: 189  GQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAF 368
              +R EE   +F  MQ + I  ++ TY  +   L + G I +A    E ++  G   N F
Sbjct: 1012 RSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVF 1071

Query: 369  SYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSAL 488
            +YN LI     SG    A  +Y++M+  G  P+  T++ L
Sbjct: 1072 TYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 3/167 (1%)
 Frame = +3

Query: 93  PIEALSFFQSVARQ---PNIVHTTESCNYMLELLRGQRRVEEMAVVFDLMQKQIIKRNME 263
           P +AL  F+ +  +   PNIV    +CN  L  L    R+ E   +F+ ++   +  +  
Sbjct: 455 PGKALETFEKMKARGIAPNIV----ACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSV 510

Query: 264 TYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLLQSGFRGQAMEVYRRM 443
           TY ++ K     G + +A   L  M +     +    N LI  L ++G   +A +++ RM
Sbjct: 511 TYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRM 570

Query: 444 VSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPNVYTF 584
               + P++ TY+ L+   GK    +  + L E M   G  PN  TF
Sbjct: 571 EEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITF 617


>ref|XP_007011706.1| Pentatricopeptide repeat-containing protein, putative [Theobroma
           cacao] gi|508782069|gb|EOY29325.1| Pentatricopeptide
           repeat-containing protein, putative [Theobroma cacao]
          Length = 1112

 Score =  278 bits (710), Expect = 1e-72
 Identities = 141/201 (70%), Positives = 166/201 (82%), Gaps = 1/201 (0%)
 Frame = +3

Query: 3   KSSFERVV-KGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLE 179
           K+S + VV  GK KN LSS+EV+  LKS TD   ALS+F+SVA  PN+VHTTE+CN+MLE
Sbjct: 70  KNSCQMVVANGKCKNSLSSEEVLRVLKSFTDTKSALSYFKSVAELPNVVHTTETCNHMLE 129

Query: 180 LLRGQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVL 359
           +LR  R V  M+ VF+ MQKQIIKR++ TYL +FKGL + GG+RQAP  LE MR AGFVL
Sbjct: 130 VLRAHRMVGAMSFVFEFMQKQIIKRDLNTYLTVFKGLDIRGGLRQAPFGLERMRNAGFVL 189

Query: 360 NAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLL 539
           NA+SYNGLIHLLLQSGF  +A+EVYRRMVSEG+KPSLKTYSALMVASGK RD  TVM LL
Sbjct: 190 NAYSYNGLIHLLLQSGFSREALEVYRRMVSEGLKPSLKTYSALMVASGKRRDIGTVMDLL 249

Query: 540 EEMQSLGLRPNVYTFTICIRV 602
           EEM++LGL+PN+YTFTICIRV
Sbjct: 250 EEMETLGLKPNIYTFTICIRV 270



 Score = 70.9 bits (172), Expect = 3e-10
 Identities = 43/133 (32%), Positives = 72/133 (54%)
 Frame = +3

Query: 201  VEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNG 380
            V+    +F  M K+ I+ ++++Y I+   L + G +  A    E ++  G   +  SYN 
Sbjct: 943  VDAACELFKRMVKEGIRPDLKSYTILVDCLCLVGRVDDAMHYFEELKLTGLDPDLVSYNL 1002

Query: 381  LIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLG 560
            +I+ L +SG   +A+ ++  M S GI P L TY++L++  G +   E      EE+Q +G
Sbjct: 1003 MINGLGRSGRVEEALSLFDEMWSRGISPDLYTYNSLILNLGTVGMVEQAGKFYEELQLMG 1062

Query: 561  LRPNVYTFTICIR 599
            L PNVYT+   IR
Sbjct: 1063 LEPNVYTYNALIR 1075


>ref|XP_006845376.1| hypothetical protein AMTR_s00019p00039970 [Amborella trichopoda]
           gi|548847948|gb|ERN07051.1| hypothetical protein
           AMTR_s00019p00039970 [Amborella trichopoda]
          Length = 1123

 Score =  277 bits (708), Expect = 2e-72
 Identities = 136/196 (69%), Positives = 168/196 (85%)
 Frame = +3

Query: 15  ERVVKGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQ 194
           E  +K + + GL+SD VIE L+S +DPIEAL+FF+S+A+QP I+HTTE+CNYML++LR  
Sbjct: 87  EAKIKRRIRKGLNSDGVIEVLRSYSDPIEALAFFKSIAQQPKIIHTTETCNYMLDILRIN 146

Query: 195 RRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSY 374
            +V EM++VFDLMQKQIIKR+ ETY+ IF GL ++GGI++AP+ALE +  AGFVLNAFSY
Sbjct: 147 GKVTEMSMVFDLMQKQIIKRSQETYVTIFNGLDIFGGIKRAPVALERLSHAGFVLNAFSY 206

Query: 375 NGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQS 554
           NGLIHLLLQSGF+ +AMEVYRRMVSE IKPSLKTYSALMVA GK +D  TVM LL EM++
Sbjct: 207 NGLIHLLLQSGFQREAMEVYRRMVSENIKPSLKTYSALMVAFGKRKDINTVMYLLHEMEA 266

Query: 555 LGLRPNVYTFTICIRV 602
           LGLRPNVYT+TICIR+
Sbjct: 267 LGLRPNVYTYTICIRI 282



 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 40/133 (30%), Positives = 73/133 (54%)
 Frame = +3

Query: 201  VEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNG 380
            +E     F  M K+ I+ +++TY I+   L + G +  A    E ++ +G   +   YN 
Sbjct: 954  LENACEFFKRMLKEGIQPDLKTYTILVDCLCMVGRVDDALQYFEALKISGHEPDLVFYNL 1013

Query: 381  LIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLG 560
            +I+ L + G   +A+ +++ M S+G+ P L +Y+AL++  G++   E    + EE+Q  G
Sbjct: 1014 VINGLGKDGRLEEALSLFKEMQSKGLLPDLYSYNALILHLGRLGRVEEAGAMYEELQRKG 1073

Query: 561  LRPNVYTFTICIR 599
            L PNV+T+   IR
Sbjct: 1074 LEPNVFTYNALIR 1086



 Score = 65.9 bits (159), Expect = 9e-09
 Identities = 45/152 (29%), Positives = 72/152 (47%)
 Frame = +3

Query: 141  IVHTTESCNYMLELLRGQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAP 320
            I+ +T + N +++ L      E    +F+ M+K     NM+TY ++   L   G I +A 
Sbjct: 794  ILPSTHAYNILIDGLLKASCFEMAWGLFEKMKKVSSTPNMQTYNLLLDALGKSGKIEEAR 853

Query: 321  LALENMRRAGFVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVAS 500
              LE M   G   N  +YN ++  L++S    QA+E Y  ++S    PS +TY  L+   
Sbjct: 854  KLLEEMHIKGIKGNTITYNIMLLGLVRSNKLDQAIEFYYELLSREFSPSPRTYGPLIDGL 913

Query: 501  GKIRDAETVMGLLEEMQSLGLRPNVYTFTICI 596
             K    +    L EEM+  G +PN   + I I
Sbjct: 914  SKAGRVDEAKELFEEMREYGCKPNRAVYNILI 945


>ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
           gi|296082142|emb|CBI21147.3| unnamed protein product
           [Vitis vinifera]
          Length = 1113

 Score =  276 bits (705), Expect = 4e-72
 Identities = 139/201 (69%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
 Frame = +3

Query: 3   KSSFERVV-KGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLE 179
           +SSF+ VV K K ++ +SS+EV   LKSI+DP +A SFF SVA  P ++HTTE+CNY+LE
Sbjct: 71  RSSFDVVVVKRKPESTMSSEEVYRVLKSISDPNQAFSFFNSVAEMPRVIHTTETCNYVLE 130

Query: 180 LLRGQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVL 359
           +LR  RRVE+M VVF+LMQKQIIKR++ TYL IFK L + GG+R+AP+ALE MR+ GFVL
Sbjct: 131 MLRAHRRVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVL 190

Query: 360 NAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLL 539
           N +SY GLIHLLL+SGF  +A++VYRRMVSEGIKPSLKTYSALMVA GK RD ETVMGLL
Sbjct: 191 NGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLL 250

Query: 540 EEMQSLGLRPNVYTFTICIRV 602
           +EM+SLGLRPN+YTFTICIR+
Sbjct: 251 QEMESLGLRPNIYTFTICIRI 271



 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 43/145 (29%), Positives = 74/145 (51%)
 Frame = +3

Query: 165  NYMLELLRGQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRR 344
            N ++     Q  VE    +F  M K+ I+ ++++Y I+   L + G +  A    E ++ 
Sbjct: 932  NILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKL 991

Query: 345  AGFVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAET 524
            +G   +   YN +I+ L +S    +A+ ++  M + GI P L TY+AL++  G     E 
Sbjct: 992  SGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEE 1051

Query: 525  VMGLLEEMQSLGLRPNVYTFTICIR 599
               + EE+Q  GL PNV+T+   IR
Sbjct: 1052 AGKMYEELQLKGLEPNVFTYNALIR 1076



 Score = 60.5 bits (145), Expect = 4e-07
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 4/163 (2%)
 Frame = +3

Query: 12   FERVVKGKTKNGLSSDEV-IETLKSITDPIEALSFFQSV---ARQPNIVHTTESCNYMLE 179
            F R+VK   +  L S  + ++ L  +    +AL +F+ +      P++V      N M+ 
Sbjct: 951  FRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLV----CYNLMIN 1006

Query: 180  LLRGQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVL 359
             L   +RVEE   +FD M+ + I  ++ TY  +   L + G + +A    E ++  G   
Sbjct: 1007 GLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEP 1066

Query: 360  NAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSAL 488
            N F+YN LI     SG   +A  VY++M+  G +P+  T++ L
Sbjct: 1067 NVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109


>ref|XP_006350217.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Solanum tuberosum]
          Length = 1080

 Score =  273 bits (699), Expect = 2e-71
 Identities = 132/194 (68%), Positives = 165/194 (85%)
 Frame = +3

Query: 21  VVKGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRR 200
           +V GK +NG+S++ ++  L+SI++P EAL+ F+SVA  P +VHTTE+CNYMLE LR   R
Sbjct: 46  LVNGKPRNGISAEGLLRNLRSISEPTEALALFKSVAEMPRVVHTTETCNYMLEYLRVLER 105

Query: 201 VEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNG 380
           + +MAVVFDLMQKQII R+++TYLIIFKGL + GGIR+AP ALE M++AGFVLNA+SYNG
Sbjct: 106 INDMAVVFDLMQKQIIYRSLDTYLIIFKGLHIRGGIREAPFALERMKKAGFVLNAYSYNG 165

Query: 381 LIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLG 560
           LIHL+LQ+GF  +A++VYRRM+SE +KPSLKTYSALMVA GK RD ETVM LL EM+ LG
Sbjct: 166 LIHLILQAGFWQEALKVYRRMISEKLKPSLKTYSALMVACGKRRDTETVMRLLSEMEGLG 225

Query: 561 LRPNVYTFTICIRV 602
           LRPN+YTFTICIRV
Sbjct: 226 LRPNIYTFTICIRV 239



 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 6/202 (2%)
 Frame = +3

Query: 12   FERVVKGKTKNGLSSDEVIETLKSITDPIEALSFFQSVAR---QPNIVHTTESCNYMLEL 182
            ++ V  G T    +   +I+ L  + +  +A  FF+ +A    +PN      S  Y + L
Sbjct: 851  YDLVSLGFTPTPCTYGPLIDGLLKVKNFDKAKDFFEEMAEYGCRPN------SAIYNI-L 903

Query: 183  LRGQRRVEEMAVVFDL---MQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGF 353
            + G  +  ++    DL   M K+ ++ +++TY I+   L     +  A    E ++ AG 
Sbjct: 904  INGFGKAGDLKAACDLFNRMNKEGVRPDLKTYTILVDCLCSARKVDDALHYFEELKSAGL 963

Query: 354  VLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMG 533
              +  SYN +I+ L +SG   +A+ +   M S GI P+L TY+ L+   G +   E    
Sbjct: 964  DPDLISYNLMINGLGKSGKMKEALHLLDEMKSRGITPNLYTYNTLIFNLGIVGMLEEAGR 1023

Query: 534  LLEEMQSLGLRPNVYTFTICIR 599
            + EE+Q  GL P+V+T+   IR
Sbjct: 1024 MYEELQQFGLEPDVFTYNALIR 1045



 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 36/138 (26%), Positives = 69/138 (50%)
 Frame = +3

Query: 171  MLELLRGQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAG 350
            +++ L   R+V++    F+ ++   +  ++ +Y ++  GL   G +++A   L+ M+  G
Sbjct: 938  LVDCLCSARKVDDALHYFEELKSAGLDPDLISYNLMINGLGKSGKMKEALHLLDEMKSRG 997

Query: 351  FVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVM 530
               N ++YN LI  L   G   +A  +Y  +   G++P + TY+AL+    K  D +   
Sbjct: 998  ITPNLYTYNTLIFNLGIVGMLEEAGRMYEELQQFGLEPDVFTYNALIRGYSKSGDPDGAY 1057

Query: 531  GLLEEMQSLGLRPNVYTF 584
             + E+M   G  PN  TF
Sbjct: 1058 AIYEKMMVGGCSPNSGTF 1075


>ref|XP_004237112.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Solanum lycopersicum]
          Length = 1131

 Score =  273 bits (699), Expect = 2e-71
 Identities = 132/194 (68%), Positives = 165/194 (85%)
 Frame = +3

Query: 21  VVKGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRR 200
           +V GK +NG+S++ V+  L+SI++P EAL+ F+SVA  P +VHTT++CNYMLE LR   R
Sbjct: 97  LVNGKPRNGISAEGVLRNLRSISEPTEALALFKSVAEMPRVVHTTKTCNYMLEFLRVLER 156

Query: 201 VEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNG 380
           + +MAVVFDLMQKQII R+++TYLIIFKGL + GGIR+AP ALE M++AGFVLNA+SYNG
Sbjct: 157 INDMAVVFDLMQKQIIYRSLDTYLIIFKGLHIRGGIREAPFALERMKKAGFVLNAYSYNG 216

Query: 381 LIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLG 560
           LIHL+LQ+GF  +A++VYRRM+SE +KPSLKTYSALMVA GK RD ETVM LL EM+ LG
Sbjct: 217 LIHLILQAGFWQEALKVYRRMISEKLKPSLKTYSALMVACGKRRDTETVMRLLSEMEGLG 276

Query: 561 LRPNVYTFTICIRV 602
           LRPN+YTFTICIRV
Sbjct: 277 LRPNIYTFTICIRV 290



 Score = 67.0 bits (162), Expect = 4e-09
 Identities = 42/127 (33%), Positives = 69/127 (54%)
 Frame = +3

Query: 219  VFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLL 398
            +F+ M K+ I+ +++TY I+   L     +  A    E ++ AG   +  SYN +I+ L 
Sbjct: 970  LFNRMNKEGIRPDLKTYTILVDCLCSARKVDDALHYFEELKSAGLDPDLISYNLMINGLG 1029

Query: 399  QSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPNVY 578
            +SG   +A+ +   M S GI P+L TY+ L+   G +   E    + EE+Q LGL P+V+
Sbjct: 1030 KSGKMKEALHLLDEMKSRGITPNLYTYNTLIFNLGIVGMLEEAGRMYEELQQLGLEPDVF 1089

Query: 579  TFTICIR 599
            T+   IR
Sbjct: 1090 TYNALIR 1096



 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 36/138 (26%), Positives = 69/138 (50%)
 Frame = +3

Query: 171  MLELLRGQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAG 350
            +++ L   R+V++    F+ ++   +  ++ +Y ++  GL   G +++A   L+ M+  G
Sbjct: 989  LVDCLCSARKVDDALHYFEELKSAGLDPDLISYNLMINGLGKSGKMKEALHLLDEMKSRG 1048

Query: 351  FVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVM 530
               N ++YN LI  L   G   +A  +Y  +   G++P + TY+AL+    K  D +   
Sbjct: 1049 ITPNLYTYNTLIFNLGIVGMLEEAGRMYEELQQLGLEPDVFTYNALIRGYSKSGDPDGAY 1108

Query: 531  GLLEEMQSLGLRPNVYTF 584
             + E+M   G  PN  TF
Sbjct: 1109 AIYEKMMVGGCSPNSGTF 1126


>ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  267 bits (683), Expect = 1e-69
 Identities = 132/194 (68%), Positives = 162/194 (83%)
 Frame = +3

Query: 21  VVKGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRR 200
           VVKGKT+  +S DEV+  LKS+TDPI ALS+F S++  P ++HTTE+CN+MLE LR   +
Sbjct: 78  VVKGKTEIRVSEDEVLGVLKSMTDPIRALSYFYSISEFPTVLHTTETCNFMLEFLRVHDK 137

Query: 201 VEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNG 380
           VE+MA VF+ MQK+II+R+++TYL IFK L + GG+RQ    L  MR+AGFVLNA+SYNG
Sbjct: 138 VEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNG 197

Query: 381 LIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLG 560
           LIHLL+QSGF G+A+EVYRRMVSEG+KPSLKTYSALMVA GK RD+E VM LL+EM+ LG
Sbjct: 198 LIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLG 257

Query: 561 LRPNVYTFTICIRV 602
           LRPNVYTFTICIRV
Sbjct: 258 LRPNVYTFTICIRV 271



 Score = 65.9 bits (159), Expect = 9e-09
 Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 3/181 (1%)
 Frame = +3

Query: 66  IETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRRVEEMAVVFDLMQKQI 245
           ++T K     +EA  +       P++V  T     ++++L   R  +E    FD+M+KQ 
Sbjct: 348 LDTFKEFWSQMEADGYM------PDVVTFT----ILVDVLCKARDFDEAFATFDVMRKQG 397

Query: 246 IKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLLQSGFRGQAM 425
           I  N+ TY  +  GL   G I  A   L+ M   G    A++Y   I    +SG  G+A+
Sbjct: 398 ILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAV 457

Query: 426 EVYRRMVSEGIKPSLKTYSALMVA---SGKIRDAETVMGLLEEMQSLGLRPNVYTFTICI 596
           E + +M ++GI P++   +A + +    G++R+A+T+   L E    GL P+  T+ + +
Sbjct: 458 ETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLREN---GLAPDSVTYNMMM 514

Query: 597 R 599
           +
Sbjct: 515 K 515



 Score = 62.4 bits (150), Expect = 9e-08
 Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
 Frame = +3

Query: 159  SCNYMLELLRGQRRVEEMAVVFDLMQKQI---IKRNMETYLIIFKGLRVWGGIRQAPLAL 329
            +C     L+ G  ++ +      L ++ +   I+ ++++Y I+   L + G + +A    
Sbjct: 927  NCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYF 986

Query: 330  ENMRRAGFVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKI 509
              ++  G   +  +YN +I+ L +S    +A+ +Y  M + GI P L TY++LM+  G  
Sbjct: 987  NELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLA 1046

Query: 510  RDAETVMGLLEEMQSLGLRPNVYTFTICIR 599
               E    + EE+Q  GL P+V+T+   IR
Sbjct: 1047 GMVEQAKRMYEELQLAGLEPDVFTYNALIR 1076


>ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  267 bits (683), Expect = 1e-69
 Identities = 132/194 (68%), Positives = 162/194 (83%)
 Frame = +3

Query: 21  VVKGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRR 200
           VVKGKT+  +S DEV+  LKS+TDPI ALS+F S++  P ++HTTE+CN+MLE LR   +
Sbjct: 78  VVKGKTEIRVSEDEVLGVLKSMTDPIRALSYFYSISEFPTVLHTTETCNFMLEFLRVHDK 137

Query: 201 VEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNG 380
           VE+MA VF+ MQK+II+R+++TYL IFK L + GG+RQ    L  MR+AGFVLNA+SYNG
Sbjct: 138 VEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNG 197

Query: 381 LIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLG 560
           LIHLL+QSGF G+A+EVYRRMVSEG+KPSLKTYSALMVA GK RD+E VM LL+EM+ LG
Sbjct: 198 LIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLG 257

Query: 561 LRPNVYTFTICIRV 602
           LRPNVYTFTICIRV
Sbjct: 258 LRPNVYTFTICIRV 271



 Score = 67.0 bits (162), Expect = 4e-09
 Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 3/181 (1%)
 Frame = +3

Query: 66  IETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRRVEEMAVVFDLMQKQI 245
           ++T K     +EA  +       P++V  T     ++++L   R  +E    FD+M+KQ 
Sbjct: 348 LDTFKEFWSQMEADGYM------PDVVTFT----ILVDVLCKARDFDEAFATFDVMRKQG 397

Query: 246 IKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLLQSGFRGQAM 425
           I  N+ TY  +  GL   G I  A   L  M   G    A++YN  I    +SG  G+A+
Sbjct: 398 ILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAV 457

Query: 426 EVYRRMVSEGIKPSLKTYSALMVA---SGKIRDAETVMGLLEEMQSLGLRPNVYTFTICI 596
           E + +M ++GI P++   +A + +    G++R+A+T+   L E    GL P+  T+ + +
Sbjct: 458 ETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLREN---GLAPDSVTYNMMM 514

Query: 597 R 599
           +
Sbjct: 515 K 515



 Score = 62.4 bits (150), Expect = 9e-08
 Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
 Frame = +3

Query: 159  SCNYMLELLRGQRRVEEMAVVFDLMQKQI---IKRNMETYLIIFKGLRVWGGIRQAPLAL 329
            +C     L+ G  ++ +      L ++ +   I+ ++++Y I+   L + G + +A    
Sbjct: 927  NCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYF 986

Query: 330  ENMRRAGFVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKI 509
              ++  G   +  +YN +I+ L +S    +A+ +Y  M + GI P L TY++LM+  G  
Sbjct: 987  NELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLA 1046

Query: 510  RDAETVMGLLEEMQSLGLRPNVYTFTICIR 599
               E    + EE+Q  GL P+V+T+   IR
Sbjct: 1047 GMVEQAKRMYEELQLAGLEPDVFTYNALIR 1076


>ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  266 bits (679), Expect = 4e-69
 Identities = 132/194 (68%), Positives = 161/194 (82%)
 Frame = +3

Query: 21  VVKGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRR 200
           VV GK+K+ +SS+EVI  LKSI+DP  ALS+F+ V++ PNIVHT E+CNYMLE LR   R
Sbjct: 78  VVNGKSKSSVSSEEVIGALKSISDPNSALSYFKMVSQLPNIVHTPETCNYMLEFLRVHGR 137

Query: 201 VEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNG 380
           VE+MA VFDLMQKQ+I RN  TYL IFK L + GGIRQAP AL  MR+AGFVLNA+SYNG
Sbjct: 138 VEDMAFVFDLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNG 197

Query: 381 LIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLG 560
           LI+ LLQ GF  +A++VY+RM+SEG+KPS+KTYSALMVA G+ RD  T+M LLEEM++LG
Sbjct: 198 LIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLG 257

Query: 561 LRPNVYTFTICIRV 602
           LRPN+YT+TICIRV
Sbjct: 258 LRPNIYTYTICIRV 271



 Score = 67.0 bits (162), Expect = 4e-09
 Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
 Frame = +3

Query: 180  LLRGQRRVEEMAVVFDLMQKQI---IKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAG 350
            L+ G  +   + +  DL ++ I   I+ ++++Y I+ + L + G +  A    E ++  G
Sbjct: 934  LINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTG 993

Query: 351  FVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVM 530
               +  SYN +I+ L +S    +A+ ++  M + GI P L TY+AL++  G     +   
Sbjct: 994  LDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAG 1053

Query: 531  GLLEEMQSLGLRPNVYTFTICIR 599
             + EE+Q +GL PNV+T+   IR
Sbjct: 1054 KMFEELQFMGLEPNVFTYNALIR 1076



 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
 Frame = +3

Query: 189 GQRRVEEMAVVFDLMQKQI---IKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVL 359
           G+RR  +   + DL+++     ++ N+ TY I  + L   G I  A   L+ M   G   
Sbjct: 238 GRRR--DTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGP 295

Query: 360 NAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLL 539
           +  +Y  LI  L  +G   +A E+Y +M +   KP L TY  LM   G   D ETV    
Sbjct: 296 DVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFW 355

Query: 540 EEMQSLGLRPNVYTFTICI 596
            EM++ G  P+V T+TI +
Sbjct: 356 SEMEADGYAPDVVTYTILV 374



 Score = 56.6 bits (135), Expect = 5e-06
 Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 1/160 (0%)
 Frame = +3

Query: 12   FERVVKGKTKNGLSSDEVIETLKSITDPIE-ALSFFQSVARQPNIVHTTESCNYMLELLR 188
            F+R++K   +  L S  ++     +T  ++ A+ +F+ + +   +   T S N M+  L 
Sbjct: 951  FKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEEL-KLTGLDPDTVSYNLMINGLG 1009

Query: 189  GQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAF 368
              RR+EE   +F  M+ + I   + TY  +       G + QA    E ++  G   N F
Sbjct: 1010 KSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVF 1069

Query: 369  SYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSAL 488
            +YN LI    +SG + +A  V+++M+  G  P+  T++ L
Sbjct: 1070 TYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109


>ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545362|gb|EEF46867.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1113

 Score =  261 bits (668), Expect = 8e-68
 Identities = 132/194 (68%), Positives = 156/194 (80%)
 Frame = +3

Query: 21  VVKGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRR 200
           V K K KN LSS EV+  L SI DP +A S+F SVA  P +VHTTE+CN+MLE+LR  RR
Sbjct: 80  VAKRKPKNALSSKEVMAVLNSILDPTDAFSYFNSVAEMPFVVHTTETCNHMLEILRIHRR 139

Query: 201 VEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNG 380
           V +M VVF+LMQ QIIKR++ TYLIIFKGL + GG+RQ P A   MR AGF LNA+SYNG
Sbjct: 140 VGDMVVVFNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNG 199

Query: 381 LIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLG 560
           LIHLLLQSG   +A+E+YRRMV EG+KPSLKT+SALMVA+GK RD ETV  LLEEM+SLG
Sbjct: 200 LIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLG 259

Query: 561 LRPNVYTFTICIRV 602
           L+PN+YT+TICIRV
Sbjct: 260 LKPNIYTYTICIRV 273



 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 40/127 (31%), Positives = 69/127 (54%)
 Frame = +3

Query: 219  VFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLL 398
            +F  M ++ I+ ++++Y  +   L   G +  A    E +++ G  L++ +YN +I  L 
Sbjct: 952  LFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLG 1011

Query: 399  QSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPNVY 578
            +S    +A+ +Y  M S GI P L TY++L++  G     E    L EE+Q +GL PNV+
Sbjct: 1012 RSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVF 1071

Query: 579  TFTICIR 599
            T+   IR
Sbjct: 1072 TYNALIR 1078



 Score = 62.8 bits (151), Expect = 7e-08
 Identities = 40/130 (30%), Positives = 66/130 (50%)
 Frame = +3

Query: 99   EALSFFQSVARQPNIVHTTESCNYMLELLRGQRRVEEMAVVFDLMQKQIIKRNMETYLII 278
            +AL +F+ + +Q  +   + + N M++ L    R+EE   ++D MQ + I  ++ TY  +
Sbjct: 983  DALHYFEKL-KQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSL 1041

Query: 279  FKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGI 458
               L V G + QA    E ++  G   N F+YN LI     SG    A  VY+RM+  G 
Sbjct: 1042 ILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGC 1101

Query: 459  KPSLKTYSAL 488
             P+  T++ L
Sbjct: 1102 SPNTGTFAQL 1111


>gb|EXB86664.1| hypothetical protein L484_013194 [Morus notabilis]
          Length = 1098

 Score =  261 bits (666), Expect = 1e-67
 Identities = 132/184 (71%), Positives = 153/184 (83%)
 Frame = +3

Query: 51  SSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRRVEEMAVVFDL 230
           S++EV   LKSI DP  A S+F SVAR P +VHTT++CNYMLELLR   RVE+MAVVFD 
Sbjct: 73  SAEEVARVLKSILDPNCAFSYFMSVARLPKVVHTTDTCNYMLELLRTNGRVEDMAVVFDF 132

Query: 231 MQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLLQSGF 410
           MQKQ+I RN+ TYL IFKGL +  GIRQAP+ALE M RAGFVLNA+SYNGLI+L+LQ+G 
Sbjct: 133 MQKQLINRNLNTYLTIFKGLYIRVGIRQAPIALEKMSRAGFVLNAYSYNGLIYLILQTGS 192

Query: 411 RGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPNVYTFTI 590
             +A+ VY+RMVSEG KPSLKTYSALMVA GK RD ETVMGLL+EM+ LGLRPN+YTFTI
Sbjct: 193 FREALVVYKRMVSEGFKPSLKTYSALMVAFGKRRDTETVMGLLQEMEDLGLRPNIYTFTI 252

Query: 591 CIRV 602
           CIRV
Sbjct: 253 CIRV 256



 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 42/133 (31%), Positives = 72/133 (54%)
 Frame = +3

Query: 201  VEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNG 380
            VE   ++F  M K+ I+ ++++Y I+   L + G I  A    E ++ +G   ++ SYN 
Sbjct: 929  VETACMLFKRMVKEGIRPDLKSYTILVDCLCLAGRIDDALHYFEELKLSGLNPDSVSYNL 988

Query: 381  LIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLG 560
            +I+ L +S    +A+ +Y  M S  I P L TY++L++  G     E    + EE+Q  G
Sbjct: 989  MINALGRSRRVEEALSLYDEMRSRRITPDLYTYNSLILNLGIAGMVEQAGSMYEELQLRG 1048

Query: 561  LRPNVYTFTICIR 599
            L P+V+T+   IR
Sbjct: 1049 LEPDVFTYNALIR 1061



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 1/160 (0%)
 Frame = +3

Query: 12   FERVVKGKTKNGLSSDEVIETLKSITDPIE-ALSFFQSVARQPNIVHTTESCNYMLELLR 188
            F+R+VK   +  L S  ++     +   I+ AL +F+ + +   +   + S N M+  L 
Sbjct: 936  FKRMVKEGIRPDLKSYTILVDCLCLAGRIDDALHYFEEL-KLSGLNPDSVSYNLMINALG 994

Query: 189  GQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAF 368
              RRVEE   ++D M+ + I  ++ TY  +   L + G + QA    E ++  G   + F
Sbjct: 995  RSRRVEEALSLYDEMRSRRITPDLYTYNSLILNLGIAGMVEQAGSMYEELQLRGLEPDVF 1054

Query: 369  SYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSAL 488
            +YN LI     SG    A  VY++M+  G  P++ T++ L
Sbjct: 1055 TYNALIRAYSASGNPDHAYAVYKKMMIGGCSPNVSTFAQL 1094



 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 46/196 (23%), Positives = 87/196 (44%), Gaps = 2/196 (1%)
 Frame = +3

Query: 15   ERVVKGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNY--MLELLR 188
            E + +G   N ++ + VI +L    +  +A+ F+  +        +   C Y  +++ L 
Sbjct: 833  EMISRGCKPNTITYNIVISSLVKSDNVDKAIDFYYDLVSGD---FSPSPCTYGPLIDGLL 889

Query: 189  GQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAF 368
              RR EE    F+ M     K N   + I+  G    G +  A +  + M + G   +  
Sbjct: 890  KSRRQEEAMRFFEEMGDYGCKPNCAIFNILINGFGKAGDVETACMLFKRMVKEGIRPDLK 949

Query: 369  SYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEM 548
            SY  L+  L  +G    A+  +  +   G+ P   +Y+ ++ A G+ R  E  + L +EM
Sbjct: 950  SYTILVDCLCLAGRIDDALHYFEELKLSGLNPDSVSYNLMINALGRSRRVEEALSLYDEM 1009

Query: 549  QSLGLRPNVYTFTICI 596
            +S  + P++YT+   I
Sbjct: 1010 RSRRITPDLYTYNSLI 1025


>ref|XP_006483487.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Citrus sinensis]
          Length = 1107

 Score =  260 bits (664), Expect = 2e-67
 Identities = 131/194 (67%), Positives = 158/194 (81%)
 Frame = +3

Query: 21  VVKGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRR 200
           VVKGK +NGL+S+EVI  L+S +D     S+F+SVA  P +VHTTE+CNYMLE+LR   R
Sbjct: 72  VVKGKPRNGLTSEEVIRVLRSFSDLDSTYSYFKSVAELPYVVHTTETCNYMLEVLRVYGR 131

Query: 201 VEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNG 380
           V +M VVFDLMQKQII R++ TYL IFK L + GG+R+A  ALE MR AGFVLNA+SYNG
Sbjct: 132 VTDMVVVFDLMQKQIINRDLSTYLTIFKALSLKGGLRRASFALEKMRAAGFVLNAYSYNG 191

Query: 381 LIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLG 560
            IH +LQSGF  +A+ VY+R+VSEGIKPSLKTYSALMVA+GK R+ +TVM LLEEM+ LG
Sbjct: 192 FIHFILQSGFCREALAVYKRVVSEGIKPSLKTYSALMVAAGKRRNIKTVMNLLEEMERLG 251

Query: 561 LRPNVYTFTICIRV 602
           LRPNVYTFTICIR+
Sbjct: 252 LRPNVYTFTICIRI 265



 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 41/133 (30%), Positives = 71/133 (53%)
 Frame = +3

Query: 201  VEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNG 380
            VE    +F  M K  I+ ++++Y ++   L + G +  A    E ++  G   +  SYN 
Sbjct: 938  VETACELFKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEELKLNGLDADTISYNF 997

Query: 381  LIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLG 560
            +I+ L +SG   +A+ ++  M   GI P L TY++L++  G+    E    L E++Q +G
Sbjct: 998  MINGLGRSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLYEQLQEMG 1057

Query: 561  LRPNVYTFTICIR 599
            L PNV+T+   IR
Sbjct: 1058 LEPNVFTYNALIR 1070



 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 1/160 (0%)
 Frame = +3

Query: 12   FERVVKGKTKNGLSSDEV-IETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLR 188
            F++++KG  +  L S  V ++ L  +    +AL +F+ + +   +   T S N+M+  L 
Sbjct: 945  FKQMIKGGIRPDLKSYSVLVDCLCMVGRVDDALHYFEEL-KLNGLDADTISYNFMINGLG 1003

Query: 189  GQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAF 368
               R+EE   +FD M+K+ I  ++ TY  +   L   G + +A    E ++  G   N F
Sbjct: 1004 RSGRIEEALSLFDEMKKRGISPDLYTYNSLILNLGRAGMVEEARKLYEQLQEMGLEPNVF 1063

Query: 369  SYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSAL 488
            +YN LI     SG    A  VY +M+  G  P+  T++ L
Sbjct: 1064 TYNALIRGYGTSGNPDSAYAVYEKMMVGGCSPNPGTFAQL 1103



 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 40/144 (27%), Positives = 72/144 (50%)
 Frame = +3

Query: 165  NYMLELLRGQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRR 344
            N +L+      RVEE+  +++ M  +  K N  ++ I+  GL     I +A     N+  
Sbjct: 821  NLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVISGLVKSNSIDKAMDLFYNLVS 880

Query: 345  AGFVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAET 524
             GF     +Y  LI  L +SG   +A +++  M+  G KP+   Y+ L+   GK  D ET
Sbjct: 881  GGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCKPNCVIYNILINGFGKTGDVET 940

Query: 525  VMGLLEEMQSLGLRPNVYTFTICI 596
               L ++M   G+RP++ ++++ +
Sbjct: 941  ACELFKQMIKGGIRPDLKSYSVLV 964



 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 5/190 (2%)
 Frame = +3

Query: 42   NGLSSDE--VIETLKSITDPIEALS---FFQSVARQPNIVHTTESCNYMLELLRGQRRVE 206
            NG+  D+  V+  +K      +AL+    F        +  T E  NY++  L      E
Sbjct: 740  NGICRDDSVVVPIIKLFCRQKKALAAKDLFVKFTENLGVTSTLEMYNYLIHGLLEVHATE 799

Query: 207  EMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLI 386
                +F  M+      ++ TY ++  G    G + +     E M   G   N  S+N +I
Sbjct: 800  MGLDLFTTMKNAGCAPDISTYNLLLDGYGKSGRVEELLKLYEEMSFRGCKPNTISHNIVI 859

Query: 387  HLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLR 566
              L++S    +AM+++  +VS G  P+  TY  L+    K    E    L EEM   G +
Sbjct: 860  SGLVKSNSIDKAMDLFYNLVSGGFSPTPCTYGPLIDGLSKSGRLEEAKKLFEEMLDYGCK 919

Query: 567  PNVYTFTICI 596
            PN   + I I
Sbjct: 920  PNCVIYNILI 929



 Score = 56.6 bits (135), Expect = 5e-06
 Identities = 45/165 (27%), Positives = 72/165 (43%)
 Frame = +3

Query: 90  DPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRRVEEMAVVFDLMQKQIIKRNMETY 269
           DP +AL  F+ +  +  IV    SCN  L  L    R+ E   +F+ ++      +  TY
Sbjct: 446 DPGKALETFEKMKIR-GIVPNVVSCNASLYSLAETGRIGEAKTIFNGLKNSGFAPDSVTY 504

Query: 270 LIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVS 449
            ++ K     G + +A   L  M   G   +    N LI  L ++    +A E++ RM  
Sbjct: 505 NMMMKCYSKVGQVDEAVTLLSEMVENGCEPDVIVMNTLIDTLYKADRVDEAWEMFCRMKD 564

Query: 450 EGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPNVYTF 584
             + P++ TY+ L+   GK    +  + L E M   G  PN  TF
Sbjct: 565 MKLAPTVVTYNTLLSGLGKEGQVQKAIELFEGMTDHGCFPNTVTF 609


>ref|XP_007136936.1| hypothetical protein PHAVU_009G086500g [Phaseolus vulgaris]
           gi|561010023|gb|ESW08930.1| hypothetical protein
           PHAVU_009G086500g [Phaseolus vulgaris]
          Length = 1106

 Score =  257 bits (657), Expect = 2e-66
 Identities = 127/193 (65%), Positives = 156/193 (80%)
 Frame = +3

Query: 24  VKGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRRV 203
           V GK+K  +SS+EVI  LKSI DP  AL +F+ V++ PN+VHT E+CNYMLELLR   RV
Sbjct: 72  VNGKSKTRVSSEEVIGVLKSILDPNSALLYFKMVSQLPNLVHTPETCNYMLELLRAHGRV 131

Query: 204 EEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGL 383
           E+M  VFD MQ+Q+I RN  TYL IFK L + GGIRQAP AL  MR+AGFVLNA+SYNGL
Sbjct: 132 EDMVFVFDFMQEQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGL 191

Query: 384 IHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGL 563
           IH LLQ GF  +A++VY+RM+SEG+KPS+KTYSALMVA GK R+  T+M LLEEM++LGL
Sbjct: 192 IHFLLQPGFCKEALKVYKRMISEGMKPSMKTYSALMVALGKRRETGTIMDLLEEMKTLGL 251

Query: 564 RPNVYTFTICIRV 602
           +PN+YT+TICIRV
Sbjct: 252 KPNIYTYTICIRV 264



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 43/170 (25%), Positives = 86/170 (50%), Gaps = 3/170 (1%)
 Frame = +3

Query: 99   EALSFFQSVARQPNIVHTTESCNYMLELLRGQRRVEEMAVVFDLMQKQI---IKRNMETY 269
            EA++ F+ ++      H   +C     L+ G  +   + +  DL ++ +   I+ ++++Y
Sbjct: 904  EAMNIFEEMSDY----HCKPNCAIYNILINGFGKAGNVDIACDLFKRMVKEGIRPDLKSY 959

Query: 270  LIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVS 449
             I+ + L +   +  A    E ++  G   +  SYN +I+ L +S    +A+ ++  M +
Sbjct: 960  TILVECLCMSDRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSHRFEEALSLFSEMKN 1019

Query: 450  EGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPNVYTFTICIR 599
             GI P L TY++L++  G     +    + EE+Q +GL PNV+T+   IR
Sbjct: 1020 RGITPDLYTYNSLILHFGNAGMVDRAGKMFEELQLMGLEPNVFTYNALIR 1069



 Score = 59.7 bits (143), Expect = 6e-07
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
 Frame = +3

Query: 189 GQRRVEEMAVVFDLMQKQI---IKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVL 359
           G+RR  E   + DL+++     +K N+ TY I  + L   G I  A   L+ M   G   
Sbjct: 231 GKRR--ETGTIMDLLEEMKTLGLKPNIYTYTICIRVLGRAGRIDDAYGILKTMDNEGCGP 288

Query: 360 NAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLL 539
           +  +Y  LI  L  +G   +AME+Y +M + G KP   TY  LM   G   + E V    
Sbjct: 289 DVVTYTVLIDALCVAGKLDKAMELYTKMRASGHKPDQVTYITLMGNFGNYGNLEMVKRFW 348

Query: 540 EEMQSLGLRPNVYTFTICI 596
            EM++ G  P+V ++TI +
Sbjct: 349 SEMEADGYAPDVVSYTIIV 367


>ref|XP_004293246.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 1089

 Score =  257 bits (656), Expect = 2e-66
 Identities = 125/190 (65%), Positives = 158/190 (83%)
 Frame = +3

Query: 33  KTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRRVEEM 212
           K +N +SS+EV+  LKSI+DP  A SFF+S+A  P ++HTTE+CNYML+LL   RRV +M
Sbjct: 58  KPRNSVSSEEVVRVLKSISDPTSAFSFFKSIADLPTVLHTTETCNYMLQLLGVHRRVGDM 117

Query: 213 AVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHL 392
           A VFDLMQ+ II R+++TYL IFKGL + GGIR AP AL  +R+ GFVLNAFSYNGLI++
Sbjct: 118 AFVFDLMQRHIINRSLDTYLTIFKGLNIRGGIRAAPYALPRLRKHGFVLNAFSYNGLIYM 177

Query: 393 LLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPN 572
           L+QSG+  +A++VY+ MVS+GI+PSLKTYSALMVA GK RD + VMGLL+EM++LGLRPN
Sbjct: 178 LIQSGYCREALQVYQTMVSQGIRPSLKTYSALMVALGKRRDVQAVMGLLKEMETLGLRPN 237

Query: 573 VYTFTICIRV 602
           VYTFTICIRV
Sbjct: 238 VYTFTICIRV 247



 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 1/160 (0%)
 Frame = +3

Query: 12   FERVVKGKTKNGLSSDEVIETLKSITDPIE-ALSFFQSVARQPNIVHTTESCNYMLELLR 188
            F+R++K   +  L S  ++         ++ AL +F+ + RQ  +   + S N M+  L 
Sbjct: 927  FKRMIKEGIRPDLKSFTILVDCYCQAGRVDDALHYFEEL-RQSGLDPDSVSYNLMINGLG 985

Query: 189  GQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAF 368
              RR+EE  V++D M+K+ I  ++ TY  +   L + G + +A    + +   G   + F
Sbjct: 986  RSRRMEEALVLYDEMRKRRITPDIFTYNSLILNLGLVGMVEEAGRIYKELLLTGLEPDVF 1045

Query: 369  SYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSAL 488
            +YN LI L   SG    A  VY+ M+  G  P++ TY+ L
Sbjct: 1046 TYNALIRLYSTSGNTDDAYAVYKNMMVGGCSPNVGTYAQL 1085



 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 46/163 (28%), Positives = 74/163 (45%)
 Frame = +3

Query: 96  IEALSFFQSVARQPNIVHTTESCNYMLELLRGQRRVEEMAVVFDLMQKQIIKRNMETYLI 275
           IEA    ++    PNIV    +CN  L  L  + R+ E   ++D +    +  +  TY +
Sbjct: 433 IEAYERMKTRGIVPNIV----ACNASLYGLAEEGRLHEAKHIYDELIYSGLSPDSVTYNM 488

Query: 276 IFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEG 455
           + K     G I +A   L  M R G   +    N LI +L ++G   +A +++ RM    
Sbjct: 489 MMKCYSRVGQIDEAIKLLSEMERNGCEADVIIVNSLIDMLYKAGRVDEAWQMFYRMKEMK 548

Query: 456 IKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPNVYTF 584
           + P++ TY+ L+ A GK       + + E M   G  PN  TF
Sbjct: 549 LTPTVVTYNTLLAALGKEGQVGKAIAMFENMTEQGCPPNAITF 591



 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 44/166 (26%), Positives = 79/166 (47%)
 Frame = +3

Query: 99  EALSFFQSVARQPNIVHTTESCNYMLELLRGQRRVEEMAVVFDLMQKQIIKRNMETYLII 278
           EAL  +Q++  Q  I  + ++ + ++  L  +R V+ +  +   M+   ++ N+ T+ I 
Sbjct: 186 EALQVYQTMVSQ-GIRPSLKTYSALMVALGKRRDVQAVMGLLKEMETLGLRPNVYTFTIC 244

Query: 279 FKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGI 458
            + L   G I +A    + M   G   +  +Y  LI  L  +G    A +++  M + G 
Sbjct: 245 IRVLGRAGKIDEAYQIFKRMDNEGCGPDVITYTVLIDALCNAGKLDNAKKLFANMKARGH 304

Query: 459 KPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPNVYTFTICI 596
           KP   TY  L+      +D +TV     EM++ G  P+V TFTI +
Sbjct: 305 KPDQVTYITLLDKFSDCKDLDTVREFWSEMKADGYAPDVVTFTILV 350



 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 44/174 (25%), Positives = 87/174 (50%), Gaps = 6/174 (3%)
 Frame = +3

Query: 99   EALSFFQSVAR---QPNIVHTTESCNYMLELLRGQRRVEEMAVVFDLMQKQI---IKRNM 260
            EA+ FF+ +A    +PN       C     L+ G  +V ++    +L ++ I   I+ ++
Sbjct: 887  EAMHFFEEMAEYGCKPN-------CAIFNILINGFSKVGDVETACELFKRMIKEGIRPDL 939

Query: 261  ETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLLQSGFRGQAMEVYRR 440
            +++ I+       G +  A    E +R++G   ++ SYN +I+ L +S    +A+ +Y  
Sbjct: 940  KSFTILVDCYCQAGRVDDALHYFEELRQSGLDPDSVSYNLMINGLGRSRRMEEALVLYDE 999

Query: 441  MVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPNVYTFTICIRV 602
            M    I P + TY++L++  G +   E    + +E+   GL P+V+T+   IR+
Sbjct: 1000 MRKRRITPDIFTYNSLILNLGLVGMVEEAGRIYKELLLTGLEPDVFTYNALIRL 1053


>ref|XP_004501390.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cicer arietinum]
          Length = 1120

 Score =  244 bits (623), Expect = 1e-62
 Identities = 120/193 (62%), Positives = 152/193 (78%)
 Frame = +3

Query: 21  VVKGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRR 200
           VV GK K  +SS+EV+  LKSI +P    S+F+ V++ PN VH T++CNYMLE LR Q R
Sbjct: 86  VVNGKNKTRVSSEEVMSVLKSILEPSSVFSYFKLVSQLPNFVHNTDACNYMLEFLRDQGR 145

Query: 201 VEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNG 380
           +E+M  VF+LMQKQ+I RN+ TY+ IFK L + GGI  AP AL  MR+AGFVLNA+SYNG
Sbjct: 146 IEDMVYVFNLMQKQVIYRNLNTYMTIFKALSIKGGIGNAPSALGKMRQAGFVLNAYSYNG 205

Query: 381 LIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLG 560
           LIHLLL  GF  +A++VY+RM+SEG+KPS+KTYSALMVA G+ RD   +M LLEEM++LG
Sbjct: 206 LIHLLL-PGFYKEALKVYKRMISEGMKPSMKTYSALMVALGRRRDTRNIMNLLEEMKNLG 264

Query: 561 LRPNVYTFTICIR 599
           LRPN+YT+TICIR
Sbjct: 265 LRPNIYTYTICIR 277



 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 40/143 (27%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
 Frame = +3

Query: 180  LLRGQRRVEEMAVVFDLMQKQI---IKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAG 350
            L+ G  +  E+ +  DL +K +   I+ ++++Y I+ + L + G + +A    E ++  G
Sbjct: 941  LINGFGKAGEIDIALDLFKKMVKEGIRPDLKSYTILVECLCITGRVDEAFQYFEELKLTG 1000

Query: 351  FVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVM 530
               +  SYN +I+ L +S    +A+ ++  M + GI P L TY++L+   G     +  +
Sbjct: 1001 LDPDTVSYNFIINGLGKSRRLEEALSLFSEMKNRGISPDLYTYNSLIFHLGVTGKVDLAV 1060

Query: 531  GLLEEMQSLGLRPNVYTFTICIR 599
             + EE+Q +GL P+V+T+   IR
Sbjct: 1061 KMYEELQLVGLEPSVFTYNALIR 1083



 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 3/181 (1%)
 Frame = +3

Query: 66  IETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRRVEEMAVVFDLMQKQI 245
           +ET+K   D +EA  +       P++V  T     ++E L      +    + D+M  + 
Sbjct: 355 LETVKRFWDEMEADGY------APDVVTYT----ILIEALCKSGDFDRAFSMLDVMTMKE 404

Query: 246 IKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLLQSGFRGQAM 425
           +  N+ TY  +  GL     + +A    ENM   G    AFSY   I    +SG  G+A 
Sbjct: 405 VFPNLHTYNTLICGLLKARRLDEALELFENMESLGVKPAAFSYVLFIDYYGKSGDPGKAF 464

Query: 426 EVYRRMVSEGIKPSLKTYSA---LMVASGKIRDAETVMGLLEEMQSLGLRPNVYTFTICI 596
           + +  M   GI PS+   +A    +  +G+IR+AE V     ++ + GL P+  T+ + I
Sbjct: 465 DTFETMKKRGIMPSIAACNASLYTLADTGRIREAEDV---FNDLHNCGLSPDSITYNMMI 521

Query: 597 R 599
           +
Sbjct: 522 K 522


>ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata] gi|297315145|gb|EFH45568.1| hypothetical protein
           ARALYDRAFT_491552 [Arabidopsis lyrata subsp. lyrata]
          Length = 1114

 Score =  243 bits (621), Expect = 2e-62
 Identities = 124/194 (63%), Positives = 151/194 (77%)
 Frame = +3

Query: 21  VVKGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRR 200
           +++  +K  LSS EV   L S  D   + S+F+SVA   N+VHTTE+CNYMLE LR   +
Sbjct: 76  MIRKSSKPDLSSSEVARVLMSFPDTDSSFSYFKSVAGNSNLVHTTETCNYMLEALRVDGK 135

Query: 201 VEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNG 380
           +EEMA VFDLMQK+IIKR+  TYL IFK L V GG+RQAP AL  MR  GFVLNA+SYNG
Sbjct: 136 IEEMAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNG 195

Query: 381 LIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLG 560
           LIHLLL+S F  +AMEVYRRM+ +G +PSL+TYS+LMV  GK RD E+VMGLL+EM++LG
Sbjct: 196 LIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLG 255

Query: 561 LRPNVYTFTICIRV 602
           L+PNVYTFTICIRV
Sbjct: 256 LKPNVYTFTICIRV 269



 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 37/131 (28%), Positives = 62/131 (47%)
 Frame = +3

Query: 204  EEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGL 383
            + + + +DLM  +       TY  +  GL   G + +A    E M   G   N   YN L
Sbjct: 875  DALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNIL 934

Query: 384  IHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGL 563
            I+   ++G    A  +++RMV EG++P LKTYS L+     +   +  +    E++  GL
Sbjct: 935  INGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGL 994

Query: 564  RPNVYTFTICI 596
             P+V  + + I
Sbjct: 995  NPDVVCYNLII 1005



 Score = 56.2 bits (134), Expect = 7e-06
 Identities = 37/135 (27%), Positives = 67/135 (49%)
 Frame = +3

Query: 171 MLELLRGQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAG 350
           +L+     R ++ +   +  M+K     ++ T+ I+   L   G   +A   L+ MR  G
Sbjct: 336 LLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQG 395

Query: 351 FVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVM 530
            + N  +YN LI  LL+      A+E++  M S G+KP+  TY   +   GK  D+ + +
Sbjct: 396 ILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSAL 455

Query: 531 GLLEEMQSLGLRPNV 575
              E+M++ G+ PN+
Sbjct: 456 ETFEKMKTKGIAPNI 470


>ref|XP_006412544.1| hypothetical protein EUTSA_v10024264mg [Eutrema salsugineum]
           gi|557113714|gb|ESQ53997.1| hypothetical protein
           EUTSA_v10024264mg [Eutrema salsugineum]
          Length = 1118

 Score =  240 bits (612), Expect = 3e-61
 Identities = 121/194 (62%), Positives = 151/194 (77%)
 Frame = +3

Query: 21  VVKGKTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRR 200
           ++   +K+  SS EV + L S+ D   A S+F+SVA   N+VHTTE+CNYMLE LR   +
Sbjct: 79  MINKTSKSNPSSGEVTKVLMSLPDTDSAFSYFKSVAANSNLVHTTETCNYMLEALRVDGK 138

Query: 201 VEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNG 380
           +EEMA VFDLMQK+IIKR++ T+L +FK L V GG+RQAP AL  MR +GF LNA+SYNG
Sbjct: 139 IEEMAYVFDLMQKRIIKRDINTFLTVFKCLSVKGGLRQAPYALRKMRESGFALNAYSYNG 198

Query: 381 LIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLG 560
           LIHLLL+S F  +AMEVYRRM+ EG +PSL+TYS+LMV  GK RD E VM LL+EM++LG
Sbjct: 199 LIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIEAVMALLKEMETLG 258

Query: 561 LRPNVYTFTICIRV 602
           L+PNVYTFTICIRV
Sbjct: 259 LKPNVYTFTICIRV 272



 Score = 59.7 bits (143), Expect = 6e-07
 Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
 Frame = +3

Query: 219  VFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLL 398
            +F  M K+ ++ +++TY ++   L + G + +       ++ +G   +   YN +I+ L 
Sbjct: 954  LFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLDPDVVCYNLIINGLG 1013

Query: 399  QSGFRGQAMEVYRRMV-SEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPNV 575
            +S    +A+E+Y  M  S GI P L TY++L++  G     E    + +E+Q  GL PNV
Sbjct: 1014 KSQRLEEALELYNEMKNSRGITPDLYTYNSLILNMGIAGMVEGAGKIYDEIQRAGLEPNV 1073

Query: 576  YTFTICIR 599
            +TF   IR
Sbjct: 1074 FTFNALIR 1081


>ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
           gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
           gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis
           thaliana] gi|7270088|emb|CAB79903.1| putative protein
           [Arabidopsis thaliana] gi|332660567|gb|AEE85967.1|
           proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  239 bits (611), Expect = 3e-61
 Identities = 122/184 (66%), Positives = 147/184 (79%)
 Frame = +3

Query: 51  SSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRRVEEMAVVFDL 230
           SS+EV   LKS  D   + S+F+SVA   N+VHTTE+CNYMLE LR   ++EEMA VFDL
Sbjct: 84  SSEEVTRGLKSFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDL 143

Query: 231 MQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLLQSGF 410
           MQK+IIKR+  TYL IFK L V GG++QAP AL  MR  GFVLNA+SYNGLIHLLL+S F
Sbjct: 144 MQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRF 203

Query: 411 RGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPNVYTFTI 590
             +AMEVYRRM+ EG +PSL+TYS+LMV  GK RD ++VMGLL+EM++LGL+PNVYTFTI
Sbjct: 204 CTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTI 263

Query: 591 CIRV 602
           CIRV
Sbjct: 264 CIRV 267



 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 37/131 (28%), Positives = 63/131 (48%)
 Frame = +3

Query: 204  EEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGL 383
            + + + +DLM  +       TY  +  GL   G + +A    E M   G   N   YN L
Sbjct: 873  DALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNIL 932

Query: 384  IHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGL 563
            I+   ++G    A  +++RMV EG++P LKTYS L+     +   +  +   +E++  GL
Sbjct: 933  INGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGL 992

Query: 564  RPNVYTFTICI 596
             P+V  + + I
Sbjct: 993  NPDVVCYNLII 1003



 Score = 55.8 bits (133), Expect = 9e-06
 Identities = 36/128 (28%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
 Frame = +3

Query: 219  VFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLL 398
            +F  M K+ ++ +++TY ++   L + G + +     + ++ +G   +   YN +I+ L 
Sbjct: 948  LFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLG 1007

Query: 399  QSGFRGQAMEVYRRM-VSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPNV 575
            +S    +A+ ++  M  S GI P L TY++L++  G     E    +  E+Q  GL PNV
Sbjct: 1008 KSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNV 1067

Query: 576  YTFTICIR 599
            +TF   IR
Sbjct: 1068 FTFNALIR 1075


>ref|XP_006282792.1| hypothetical protein CARUB_v10006400mg [Capsella rubella]
           gi|482551497|gb|EOA15690.1| hypothetical protein
           CARUB_v10006400mg [Capsella rubella]
          Length = 1114

 Score =  239 bits (609), Expect = 6e-61
 Identities = 126/200 (63%), Positives = 151/200 (75%), Gaps = 1/200 (0%)
 Frame = +3

Query: 6   SSFERVVKGKT-KNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLEL 182
           S F   + GK+ K+ LSS EV   LKS  D     S+F+SVA   N+VH+TE+CNYMLE 
Sbjct: 70  SDFSASMIGKSLKSNLSSIEVTRVLKSFPDIDSKFSYFKSVADNSNLVHSTETCNYMLEA 129

Query: 183 LRGQRRVEEMAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLN 362
           LR   +VEEM  VFD MQK+IIKR+  TYL IFK L V GG+RQ+P AL  MR  GFVLN
Sbjct: 130 LRVNGKVEEMVYVFDFMQKRIIKRDANTYLTIFKSLSVKGGLRQSPYALRKMREFGFVLN 189

Query: 363 AFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLE 542
           A+SYNGLIHLLL+S F  +AMEVY RM+ EG +PSL+TYS+LMV  GK RD E+VMGLL+
Sbjct: 190 AYSYNGLIHLLLKSRFCTEAMEVYSRMILEGFRPSLQTYSSLMVGLGKRRDIESVMGLLK 249

Query: 543 EMQSLGLRPNVYTFTICIRV 602
           EM++LGL+PNVYTFTICIRV
Sbjct: 250 EMETLGLKPNVYTFTICIRV 269



 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
 Frame = +3

Query: 132  QPNIVHTTESCNYMLELLRGQRRVEE-MAVVFDLMQKQIIKRNMETYLIIFKGLRVWGGI 308
            +PNI+    + N +L  L     V+E + + +DL+  +       TY  +  GL   G +
Sbjct: 854  EPNII----THNIVLSGLVKAGNVDEALDLYYDLISDRDFSPTACTYGPLIDGLSKSGRL 909

Query: 309  RQAPLALENMRRAGFVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVSEGIKPSLKTYSAL 488
             +A    E M   G   N   YN LI+   ++G    A  +++RMV EG++P LKTYS L
Sbjct: 910  YEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVL 969

Query: 489  MVASGKIRDAETVMGLLEEMQSLGLRPNVYTFTICI 596
            +     +   +  +    E++  GL P+V  + + I
Sbjct: 970  VDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLII 1005


>ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355492334|gb|AES73537.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  238 bits (606), Expect = 1e-60
 Identities = 115/189 (60%), Positives = 149/189 (78%)
 Frame = +3

Query: 33  KTKNGLSSDEVIETLKSITDPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRRVEEM 212
           K K  +S +EV+  LKSI+DP  A S+F+ V++  N VHTT++CNYMLE+LR QRR+E+M
Sbjct: 91  KNKTSVSEEEVMTILKSISDPNSAFSYFKIVSQLTNFVHTTDACNYMLEILREQRRIEDM 150

Query: 213 AVVFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHL 392
             VFDLMQK++I RN+ TY+ IFK L + GGI +AP AL  M   GF+LNA+SYNGLIHL
Sbjct: 151 VFVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHL 210

Query: 393 LLQSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPN 572
           LL  GF  +A++VY+RM+SEG+KPS+KTYSALMVA G+  D   +M LLEEM+S+GLRPN
Sbjct: 211 LL-PGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPN 269

Query: 573 VYTFTICIR 599
           +YT+TICIR
Sbjct: 270 IYTYTICIR 278



 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 39/127 (30%), Positives = 72/127 (56%)
 Frame = +3

Query: 219  VFDLMQKQIIKRNMETYLIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLL 398
            +F  M K+ I+ ++++Y I+ + L + G I +A    E ++  G   +  SYN +I+ L 
Sbjct: 958  LFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLG 1017

Query: 399  QSGFRGQAMEVYRRMVSEGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPNVY 578
            +S    +A+ ++  M + GI P L TY+AL++  G     +  + + EE+Q +GL P+V+
Sbjct: 1018 KSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVF 1077

Query: 579  TFTICIR 599
            T+   IR
Sbjct: 1078 TYNALIR 1084



 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 42/165 (25%), Positives = 76/165 (46%)
 Frame = +3

Query: 90  DPIEALSFFQSVARQPNIVHTTESCNYMLELLRGQRRVEEMAVVFDLMQKQIIKRNMETY 269
           DP +A+  F+++ ++  I+ +  +CN  L  L    R+ E   +F+ + K  +  +  TY
Sbjct: 460 DPAKAIDTFETMKKR-GIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTY 518

Query: 270 LIIFKGLRVWGGIRQAPLALENMRRAGFVLNAFSYNGLIHLLLQSGFRGQAMEVYRRMVS 449
            ++ K     G I +A   L  M   G   +    N LI+ L ++G    A +++ R+ +
Sbjct: 519 NMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKN 578

Query: 450 EGIKPSLKTYSALMVASGKIRDAETVMGLLEEMQSLGLRPNVYTF 584
             + P++ TY+ L+   GK       + L   M   G  PN  TF
Sbjct: 579 LKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITF 623