BLASTX nr result
ID: Akebia23_contig00028431
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia23_contig00028431
(471 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu... 95 1e-31
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 84 1e-24
gb|AFB73912.1| polyprotein [Citrus sinensis] 69 5e-24
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc... 82 7e-24
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 82 8e-24
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 81 1e-23
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 76 1e-23
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 76 1e-23
gb|AFB73911.1| polyprotein [Citrus sinensis] 69 2e-23
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc... 80 2e-23
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 67 3e-23
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 75 4e-23
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 75 4e-23
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 75 4e-23
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 75 4e-23
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 80 4e-23
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 67 7e-23
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 67 7e-23
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 67 7e-23
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 75 7e-23
>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 867
Score = 95.1 bits (235), Expect(2) = 1e-31
Identities = 48/101 (47%), Positives = 59/101 (58%)
Frame = -3
Query: 304 EGTRKENLYFLNGHTITGRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXG 125
+G K NLY+ G T+ G ++SS + + +LWHM LGHA E G
Sbjct: 325 KGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEATKLWHMRLGHAGEKSLQIFTKQGLLKG 384
Query: 124 AKSGKLDFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
K+ KL+FCEHCVLGKQ RVKF TAI TK LD V+ DVW
Sbjct: 385 TKACKLEFCEHCVLGKQRRVKFGTAIHNTKGILDYVHSDVW 425
Score = 67.4 bits (163), Expect(2) = 1e-31
Identities = 32/60 (53%), Positives = 43/60 (71%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEMRALEK 289
+L+ HDG+ R L D+RYVP LKKNLISLG L+S G VTM +G+LK GA + ++ + K
Sbjct: 270 KLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATSGALVMLKGVMK 329
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 84.3 bits (207), Expect(2) = 1e-24
Identities = 43/95 (45%), Positives = 53/95 (55%)
Frame = -3
Query: 286 NLYFLNGHTITGRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKSGKL 107
NLY L G T+ G T ++ S+DE LWHM LGH E G GK+
Sbjct: 400 NLYVLRGSTLHGSVTAAAVSKDEPIKT-NLWHMRLGHMSELGMAELMKRNLLDGCTQGKM 458
Query: 106 DFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
FCEHCV GK RVKF+T++ RTK LD V+ D+W
Sbjct: 459 KFCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLW 493
Score = 54.7 bits (130), Expect(2) = 1e-24
Identities = 24/55 (43%), Positives = 37/55 (67%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEM 304
++K HDG R L D+R++P + +NLISL LD+ G K + GV+KV +G+ + M
Sbjct: 338 QIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYM 392
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 68.9 bits (167), Expect(2) = 5e-24
Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = -3
Query: 286 NLYFLNGHTIT-GRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKSGK 110
NL+ L G T+ A V+S+ E+ +WH+ LGH E G KS
Sbjct: 399 NLFMLKGETLQEADACVASNGEESTM----MWHLKLGHMSEQGLKILSERKLPPGLKSVS 454
Query: 109 LDFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
L FCEHCV KQ R+KFS +I R+K LD ++ DVW
Sbjct: 455 LPFCEHCVTSKQHRLKFSRSIARSKCILDLIHSDVW 490
Score = 67.8 bits (164), Expect(2) = 5e-24
Identities = 30/57 (52%), Positives = 46/57 (80%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEMRA 298
++KM DGTIR + ++R+V LKKNL+SLG +DS+G K +ENG++K+V+GA + M+A
Sbjct: 337 KIKMFDGTIRTIEEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKA 393
>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1131
Score = 81.6 bits (200), Expect(2) = 7e-24
Identities = 42/95 (44%), Positives = 52/95 (54%)
Frame = -3
Query: 286 NLYFLNGHTITGRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKSGKL 107
NLY L G T+ G T ++ S+DE LWHM LGH E G G +
Sbjct: 350 NLYVLRGSTLHGSVTAAAVSKDEP-SKTNLWHMRLGHMSELGMAELMKRNLLDGYTQGNM 408
Query: 106 DFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
FCEHCV GK RVKF+T++ RTK LD V+ D+W
Sbjct: 409 KFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLW 443
Score = 54.7 bits (130), Expect(2) = 7e-24
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEM 304
++K HDG R L D+RY+P + +NLISL LD+ G K + GV+KV +G+ + M
Sbjct: 288 QIKTHDGMTRTLKDVRYIPGMARNLISLSTLDAEGYKYSGLGGVVKVSKGSLVYM 342
>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
Group] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa Japonica Group]
gi|31431214|gb|AAP53029.1| retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group]
Length = 1229
Score = 82.0 bits (201), Expect(2) = 8e-24
Identities = 42/95 (44%), Positives = 52/95 (54%)
Frame = -3
Query: 286 NLYFLNGHTITGRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKSGKL 107
NLY L G T+ G T ++ S+DE LWHM LGH E G G +
Sbjct: 397 NLYVLRGSTLHGSLTAAAVSKDEP-SKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNM 455
Query: 106 DFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
FCEHCV GK RVKF+T++ RTK LD V+ D+W
Sbjct: 456 KFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLW 490
Score = 53.9 bits (128), Expect(2) = 8e-24
Identities = 24/55 (43%), Positives = 37/55 (67%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEM 304
++K HDG R L D+R++P + +NLISL LD+ G K + GV+KV +G+ + M
Sbjct: 335 QIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYM 389
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 81.3 bits (199), Expect(2) = 1e-23
Identities = 41/95 (43%), Positives = 52/95 (54%)
Frame = -3
Query: 286 NLYFLNGHTITGRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKSGKL 107
NLY L G T+ G T ++ ++DE LWHM LGH E G G +
Sbjct: 400 NLYVLRGSTLHGSVTAAAVTKDEP-SKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNM 458
Query: 106 DFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
FCEHCV GK RVKF+T++ RTK LD V+ D+W
Sbjct: 459 KFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLW 493
Score = 53.9 bits (128), Expect(2) = 1e-23
Identities = 24/55 (43%), Positives = 37/55 (67%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEM 304
++K HDG R L D+R++P + +NLISL LD+ G K + GV+KV +G+ + M
Sbjct: 338 QIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYM 392
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 76.3 bits (186), Expect(2) = 1e-23
Identities = 44/99 (44%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = -3
Query: 295 RKENLYFLNGHTITGR-ATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAK 119
+ NLY L G TI G ATVS S + D LWHM LGH E G
Sbjct: 389 KSANLYHLQGTTILGNVATVSDSLSNS--DATNLWHMRLGHMSEIGLAELSMRGLLDGQS 446
Query: 118 SGKLDFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
GKL FCEHC+ GK RVKF+T+ T+ LD V+ D+W
Sbjct: 447 IGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 485
Score = 58.9 bits (141), Expect(2) = 1e-23
Identities = 27/57 (47%), Positives = 43/57 (75%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEMRA 298
++KM DG IR L+D+R++P+LK++LISL LD G K + +G+LKV +G+ + M+A
Sbjct: 330 QIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKA 386
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 76.3 bits (186), Expect(2) = 1e-23
Identities = 44/99 (44%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = -3
Query: 295 RKENLYFLNGHTITGR-ATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAK 119
+ NLY L G TI G ATVS S + D LWHM LGH E G
Sbjct: 221 KSANLYHLQGTTILGNVATVSDSLSNS--DATNLWHMRLGHMSEIGLAELSMRGLLDGQS 278
Query: 118 SGKLDFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
GKL FCEHC+ GK RVKF+T+ T+ LD V+ D+W
Sbjct: 279 IGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 317
Score = 58.9 bits (141), Expect(2) = 1e-23
Identities = 27/57 (47%), Positives = 43/57 (75%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEMRA 298
++KM DG IR L+D+R++P+LK++LISL LD G K + +G+LKV +G+ + M+A
Sbjct: 162 QIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKA 218
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 68.9 bits (167), Expect(2) = 2e-23
Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = -3
Query: 286 NLYFLNGHTIT-GRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKSGK 110
NL+ L G T+ A V+S+ E+ +WH+ LGH E G KS
Sbjct: 399 NLFMLKGETLQEADACVASNGEESTM----MWHLKLGHMSEQGLKILSERKLLPGLKSVS 454
Query: 109 LDFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
L FCEHCV KQ R+KFS +I R+K LD ++ DVW
Sbjct: 455 LPFCEHCVTSKQHRLKFSRSIARSKCILDLIHSDVW 490
Score = 65.9 bits (159), Expect(2) = 2e-23
Identities = 29/56 (51%), Positives = 45/56 (80%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEMR 301
++KM DGTIR + ++R+V LKKNL+SLG +DS+G K +ENG++K+V+GA + M+
Sbjct: 337 KIKMFDGTIRTIGEVRHVNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMK 392
>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 80.5 bits (197), Expect(2) = 2e-23
Identities = 41/95 (43%), Positives = 52/95 (54%)
Frame = -3
Query: 286 NLYFLNGHTITGRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKSGKL 107
NLY L G T+ G T ++ S+DE LWHM LGH E G G +
Sbjct: 340 NLYVLRGSTLHGSITAAAVSKDEP-SKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNM 398
Query: 106 DFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
FCEHCV GK RVKF+T++ R+K LD V+ D+W
Sbjct: 399 KFCEHCVFGKHKRVKFNTSVHRSKGILDYVHADLW 433
Score = 53.9 bits (128), Expect(2) = 2e-23
Identities = 24/55 (43%), Positives = 37/55 (67%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEM 304
++K HDG R L D+R++P + +NLISL LD+ G K + GV+KV +G+ + M
Sbjct: 278 QIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYM 332
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 67.4 bits (163), Expect(2) = 3e-23
Identities = 31/57 (54%), Positives = 44/57 (77%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEMRA 298
RLKMHDGT+R++ +R+V LKKNL+S+G LD G K+ E+G+LKVV+G + M+A
Sbjct: 336 RLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKA 392
Score = 66.6 bits (161), Expect(2) = 3e-23
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = -3
Query: 286 NLYFLNGHTIT-GRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKSGK 110
NLY L G T+ A+V++SS++E +WH LGH E G K+
Sbjct: 398 NLYMLLGDTLQEADASVAASSQEET---TMMWHQRLGHMSERGLKVLAERNLLHGLKAVN 454
Query: 109 LDFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
L FCEHCV+ KQ R+KF+ R+K LD ++ DVW
Sbjct: 455 LPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW 490
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 74.7 bits (182), Expect(2) = 4e-23
Identities = 41/98 (41%), Positives = 49/98 (50%)
Frame = -3
Query: 295 RKENLYFLNGHTITGRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKS 116
+ NLY L G TI G S S + D LWHM LGH E G
Sbjct: 611 KSANLYHLRGTTILGNVAAVSDSLSNS-DATNLWHMRLGHMTEIGLAELSKRGLLDGQSI 669
Query: 115 GKLDFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
GKL FCEHC+ GK RVKF+T+ T+ LD V+ D+W
Sbjct: 670 GKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 707
Score = 58.9 bits (141), Expect(2) = 4e-23
Identities = 27/57 (47%), Positives = 43/57 (75%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEMRA 298
++KM DG IR L+D+R++P+LK++LISL LD G K + +G+LKV +G+ + M+A
Sbjct: 552 QIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 608
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 74.7 bits (182), Expect(2) = 4e-23
Identities = 41/98 (41%), Positives = 49/98 (50%)
Frame = -3
Query: 295 RKENLYFLNGHTITGRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKS 116
+ NLY L G TI G S S + D LWHM LGH E G
Sbjct: 404 KSANLYHLRGTTILGNVAAVSDSLSNS-DATNLWHMRLGHMTEIGLAELSKRGLLDGQSI 462
Query: 115 GKLDFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
GKL FCEHC+ GK RVKF+T+ T+ LD V+ D+W
Sbjct: 463 GKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 500
Score = 58.9 bits (141), Expect(2) = 4e-23
Identities = 27/57 (47%), Positives = 43/57 (75%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEMRA 298
++KM DG IR L+D+R++P+LK++LISL LD G K + +G+LKV +G+ + M+A
Sbjct: 345 QIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 401
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 75.1 bits (183), Expect(2) = 4e-23
Identities = 41/98 (41%), Positives = 49/98 (50%)
Frame = -3
Query: 295 RKENLYFLNGHTITGRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKS 116
+ NLY L G TI G S S + D LWHM LGH E G
Sbjct: 439 KSANLYHLRGTTILGNVAAVSDSLSNS-DATNLWHMRLGHMSEIGLAELSKRELLDGQSI 497
Query: 115 GKLDFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
GKL FCEHC+ GK RVKF+T+ T+ LD V+ D+W
Sbjct: 498 GKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 535
Score = 58.5 bits (140), Expect(2) = 4e-23
Identities = 27/57 (47%), Positives = 43/57 (75%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEMRA 298
++KM DG IR L+D+R++P+LK++LISL LD G K + +G+LKV +G+ + M+A
Sbjct: 380 QIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 436
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 75.1 bits (183), Expect(2) = 4e-23
Identities = 41/98 (41%), Positives = 49/98 (50%)
Frame = -3
Query: 295 RKENLYFLNGHTITGRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKS 116
+ NLY L G TI G S S + D LWHM LGH E G
Sbjct: 439 KSANLYHLRGTTILGNVAAVSDSLSNS-DATNLWHMRLGHMSEIGLAELSKRELLDGQSI 497
Query: 115 GKLDFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
GKL FCEHC+ GK RVKF+T+ T+ LD V+ D+W
Sbjct: 498 GKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 535
Score = 58.5 bits (140), Expect(2) = 4e-23
Identities = 27/57 (47%), Positives = 43/57 (75%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEMRA 298
++KM DG IR L+D+R++P+LK++LISL LD G K + +G+LKV +G+ + M+A
Sbjct: 380 QIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 436
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 80.1 bits (196), Expect(2) = 4e-23
Identities = 41/95 (43%), Positives = 51/95 (53%)
Frame = -3
Query: 286 NLYFLNGHTITGRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKSGKL 107
NLY L G T+ G T + S+DE +WHM LGH E G G +
Sbjct: 295 NLYVLRGSTLHGYVTAAVVSKDEP-SKTNMWHMRLGHMSELGMAELMKRNLLDGCTQGNM 353
Query: 106 DFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
FCEHCV GK RVKF+T++ RTK LD V+ D+W
Sbjct: 354 KFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLW 388
Score = 53.5 bits (127), Expect(2) = 4e-23
Identities = 24/55 (43%), Positives = 37/55 (67%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEM 304
++K HDG R L D+R++P + +NLISL LD+ G K + GV+KV +G+ + M
Sbjct: 233 QIKTHDGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYM 287
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 67.4 bits (163), Expect(2) = 7e-23
Identities = 31/57 (54%), Positives = 44/57 (77%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEMRA 298
RLKMHDGT+R++ +R+V LKKNL+S+G LD G K+ E+G+LKVV+G + M+A
Sbjct: 336 RLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKA 392
Score = 65.5 bits (158), Expect(2) = 7e-23
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = -3
Query: 286 NLYFLNGHTIT-GRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKSGK 110
NLY L G T+ A+V+++S++E +WH LGH E G K+
Sbjct: 398 NLYMLLGDTLQEADASVAAASQEET---TMMWHQRLGHMSERGLKVLVERNLLHGLKTVN 454
Query: 109 LDFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
L FCEHCV+ KQ R+KF+ R+K LD ++ DVW
Sbjct: 455 LPFCEHCVMSKQHRLKFARVTTRSKHILDLIHSDVW 490
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 67.4 bits (163), Expect(2) = 7e-23
Identities = 31/57 (54%), Positives = 44/57 (77%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEMRA 298
RLKMHDGT+R++ +R+V LKKNL+S+G LD G K+ E+G+LKVV+G + M+A
Sbjct: 336 RLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKA 392
Score = 65.5 bits (158), Expect(2) = 7e-23
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = -3
Query: 286 NLYFLNGHTIT-GRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKSGK 110
NLY L G T+ A+V+++S++E +WH LGH E G K+
Sbjct: 398 NLYMLLGDTLQEADASVAAASQEET---TMMWHQRLGHMSERGLKVLVERNLLHGLKTVN 454
Query: 109 LDFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
L FCEHCV+ KQ R+KF+ R+K LD ++ DVW
Sbjct: 455 LPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW 490
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 67.4 bits (163), Expect(2) = 7e-23
Identities = 31/57 (54%), Positives = 44/57 (77%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEMRA 298
RLKMHDGT+R++ +R+V LKKNL+S+G LD G K+ E+G+LKVV+G + M+A
Sbjct: 336 RLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKA 392
Score = 65.5 bits (158), Expect(2) = 7e-23
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Frame = -3
Query: 286 NLYFLNGHTIT-GRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKSGK 110
NLY L G T+ A+V+++S++E +WH LGH E G K+
Sbjct: 398 NLYMLLGDTLQEADASVAAASQEET---TMMWHQRLGHMSERGLKVLVERNLLHGLKTVN 454
Query: 109 LDFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
L FCEHCV+ KQ R+KF+ R+K LD ++ DVW
Sbjct: 455 LPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW 490
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 74.7 bits (182), Expect(2) = 7e-23
Identities = 41/95 (43%), Positives = 48/95 (50%)
Frame = -3
Query: 286 NLYFLNGHTITGRATVSSSSEDEAFDNPRLWHMCLGHAEEXXXXXXXXXXXXXGAKSGKL 107
NLY L G TI G S S + D LWHM LGH E G GKL
Sbjct: 316 NLYHLRGTTILGNVAAVSDSLSNS-DATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKL 374
Query: 106 DFCEHCVLGKQTRVKFSTAILRTKATLDDVNIDVW 2
FCEHC+ GK RVKF+T+ T+ LD V+ D+W
Sbjct: 375 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 409
Score = 58.2 bits (139), Expect(2) = 7e-23
Identities = 27/57 (47%), Positives = 42/57 (73%)
Frame = -1
Query: 468 RLKMHDGTIRRLTDIRYVPDLKKNLISLGVLDSNG*KVTMENGVLKVVRGAFLEMRA 298
++KM DG IR L D+R++P+LK++LISL LD G K + +G+LKV +G+ + M+A
Sbjct: 254 QIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 310