BLASTX nr result
ID: Akebia23_contig00026853
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Akebia23_contig00026853
(1165 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABG65972.1| retrotransposon protein, putative, Ty3-gypsy subc... 74 2e-19
gb|AAN09859.1| putative polyprotein [Oryza sativa Japonica Group] 74 2e-19
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 70 2e-17
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 72 2e-17
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 72 2e-17
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 69 3e-17
gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japoni... 65 9e-17
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 70 2e-16
emb|CAE04927.2| OSJNBa0017P10.4 [Oryza sativa Japonica Group] gi... 66 2e-16
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group] 65 3e-16
ref|XP_004977878.1| PREDICTED: uncharacterized protein LOC101763... 67 3e-16
ref|XP_004980298.1| PREDICTED: uncharacterized protein LOC101759... 67 3e-16
emb|CAE02303.2| OSJNBa0042F21.10 [Oryza sativa Japonica Group] 65 3e-16
emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group] 64 4e-16
ref|XP_007052567.1| Gag-pol polyprotein, putative [Theobroma cac... 60 6e-16
gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-... 65 7e-16
gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sati... 65 7e-16
gb|AAX96591.1| retrotransposon protein, putative, Ty3-gypsy sub-... 65 7e-16
gb|AAX96647.1| retrotransposon protein, putative, Ty3-gypsy sub-... 65 7e-16
ref|XP_004980437.1| PREDICTED: uncharacterized protein LOC101781... 64 7e-16
>gb|ABG65972.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1315
Score = 74.3 bits (181), Expect(2) = 2e-19
Identities = 29/63 (46%), Positives = 42/63 (66%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
TQ C + F IG+Y + C++VPM+ C +LLGCPW HD D + ++N Y+F+HN K +
Sbjct: 549 TQVCRVLFSIGSYADSVDCDVVPMQACSLLLGCPWEHDNDATHHGRSNKYTFVHNGKKFI 608
Query: 985 LHP 993
L P
Sbjct: 609 LLP 611
Score = 49.3 bits (116), Expect(2) = 2e-19
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +2
Query: 563 EHLSCVIHNLLS--IQHVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIK 736
++ + ++ +LS +Q D RY LF + + ++IID S KN++SS + K +
Sbjct: 466 DYRTIIVQRVLSTYVQQHDKLQRYNLFQIFFVINNHRARVIIDGGSCKNLLSSDLVKKLG 525
Query: 737 LLKTAHPKPYSIGWIDD 787
L HP PY I W++D
Sbjct: 526 LTTRTHPHPYHIQWLND 542
Score = 45.8 bits (107), Expect(2) = 4e-07
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +1
Query: 826 FRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVVLHP 993
F IG Y + ++VPM+ C +L G PW + ++ ANTY+F HN K+ L P
Sbjct: 1035 FSIGDYHDTVNFDLVPMQACSLLFGQPWVFANNGSHNFVANTYTFRHNGRKMKLVP 1090
Score = 36.2 bits (82), Expect(2) = 4e-07
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +2
Query: 572 SCVIHNLLSIQ--HVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLK 745
S ++ +LS Q V+ + + LF V+D+ + II + S N +S + + ++LL
Sbjct: 948 STLVQQVLSSQMEKVEQWLYHELFETKFVVKDRACRTIIVNESCNNFVSLDLVEKLELLT 1007
Query: 746 TAHPKPYSIGWID 784
+P+PY I W +
Sbjct: 1008 QPNPQPYYIKWFN 1020
>gb|AAN09859.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 928
Score = 74.3 bits (181), Expect(2) = 2e-19
Identities = 29/63 (46%), Positives = 42/63 (66%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
TQ C + F IG+Y + C++VPM+ C +LLGCPW HD D + ++N Y+F+HN K +
Sbjct: 549 TQVCRVLFSIGSYADSVDCDVVPMQACSLLLGCPWEHDNDATHHGRSNKYTFVHNGKKFI 608
Query: 985 LHP 993
L P
Sbjct: 609 LLP 611
Score = 49.3 bits (116), Expect(2) = 2e-19
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +2
Query: 563 EHLSCVIHNLLS--IQHVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIK 736
++ + ++ +LS +Q D RY LF + + ++IID S KN++SS + K +
Sbjct: 466 DYRTIIVQRVLSTYVQQHDKLQRYNLFQIFFVINNHRARVIIDGGSCKNLLSSDLVKKLG 525
Query: 737 LLKTAHPKPYSIGWIDD 787
L HP PY I W++D
Sbjct: 526 LTTRTHPHPYHIQWLND 542
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 69.7 bits (169), Expect(2) = 2e-17
Identities = 31/63 (49%), Positives = 42/63 (66%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
T+ + F IG+Y I C++VPM+ C +LLG PW DKD + K+N YSF+HN K+V
Sbjct: 548 TRLVRVHFAIGSYHDSINCDVVPMQACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLV 607
Query: 985 LHP 993
LHP
Sbjct: 608 LHP 610
Score = 47.4 bits (111), Expect(2) = 2e-17
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +2
Query: 572 SCVIHNLLSIQ--HVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLK 745
S V+ +LS Q + R+ LF C ++++ ++IID S N+ S+ M + + L
Sbjct: 468 SLVVQRVLSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLALST 527
Query: 746 TAHPKPYSIGWIDDEYQKQALNSATLH 826
HP+PY I W++ + + +H
Sbjct: 528 QPHPQPYYIQWLNSSGKVKVTRLVRVH 554
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 72.4 bits (176), Expect(2) = 2e-17
Identities = 28/62 (45%), Positives = 42/62 (67%)
Frame = +1
Query: 808 QQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVVL 987
+QC ++F +G Y +ILC++VPM+ CH+LLG PW +D+D + + N YS +HN K L
Sbjct: 481 KQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRDTTHHGRKNRYSLLHNGKKYTL 540
Query: 988 HP 993
P
Sbjct: 541 AP 542
Score = 44.3 bits (103), Expect(2) = 2e-17
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +2
Query: 593 LSIQHVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLKTAHPKPYSI 772
+++ VD R LF C ++ K Y +IID S N++SS++ + + PY +
Sbjct: 409 INLGSVDEGQRENLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRL 468
Query: 773 GWIDD 787
W++D
Sbjct: 469 QWLND 473
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 72.4 bits (176), Expect(2) = 2e-17
Identities = 28/62 (45%), Positives = 42/62 (67%)
Frame = +1
Query: 808 QQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVVL 987
+QC ++F +G Y +ILC++VPM+ CH+LLG PW +D+D + + N YS +HN K L
Sbjct: 481 KQCMISFNVGRYEDEILCDVVPMQACHVLLGRPWQYDRDTTHHGRKNRYSLLHNGKKYTL 540
Query: 988 HP 993
P
Sbjct: 541 AP 542
Score = 44.3 bits (103), Expect(2) = 2e-17
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +2
Query: 593 LSIQHVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLKTAHPKPYSI 772
+++ VD R LF C ++ K Y +IID S N++SS++ + + PY +
Sbjct: 409 INLGSVDEGQRENLFHTRCGIKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRSTPYRL 468
Query: 773 GWIDD 787
W++D
Sbjct: 469 QWLND 473
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 69.3 bits (168), Expect(2) = 3e-17
Identities = 31/63 (49%), Positives = 41/63 (65%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
T+ + F IG+Y I C++VPM+ C I LG PW DKD + K+N YSF+HN K+V
Sbjct: 548 TRLVRVHFAIGSYHDSINCDVVPMQACSIFLGRPWQFDKDSLHFGKSNQYSFVHNGKKLV 607
Query: 985 LHP 993
LHP
Sbjct: 608 LHP 610
Score = 47.0 bits (110), Expect(2) = 3e-17
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +2
Query: 572 SCVIHNLLSIQ--HVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLK 745
S V+ +LS Q + R+ LF C ++++ ++IID S N+ S+ M + + L
Sbjct: 468 SLVVQRVLSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDRGSCNNLASAEMVEKLALST 527
Query: 746 TAHPKPYSIGWIDDEYQKQALNSATLH 826
HP+PY I W++ + + +H
Sbjct: 528 QPHPQPYYIQWLNSSGKVKVTRLVRVH 554
>gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1234
Score = 65.1 bits (157), Expect(2) = 9e-17
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
T+ ++ F IG Y + C++VPM+ C+ILLG PW D+D + ++N YSF+++ K+V
Sbjct: 482 TKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIV 541
Query: 985 LHP----SYAKPKPSQPAKYKHVADK 1050
LHP + ++ AK K +DK
Sbjct: 542 LHPMSPEDILRDDVAKAAKSKCESDK 567
Score = 49.7 bits (117), Expect(2) = 9e-17
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +2
Query: 572 SCVIHNLLSIQ--HVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLK 745
S ++ +LS Q + R+ LF C V+++ ++IID S KN+ SS M + + L
Sbjct: 402 SLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCKNLASSEMVEKLALST 461
Query: 746 TAHPKPYSIGWIDD 787
HP PY I W+++
Sbjct: 462 KPHPHPYYIQWLNN 475
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 69.7 bits (169), Expect(2) = 2e-16
Identities = 31/63 (49%), Positives = 42/63 (66%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
T+ + F IG+Y I C++VPM+ C +LLG PW DKD + K+N YSF+HN K+V
Sbjct: 548 TRLVRVHFAIGSYHDSINCDVVPMQACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLV 607
Query: 985 LHP 993
LHP
Sbjct: 608 LHP 610
Score = 44.3 bits (103), Expect(2) = 2e-16
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +2
Query: 572 SCVIHNLLSIQ--HVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLK 745
S V+ +LS Q + + LF C ++++ +IID S N+ S+ M + + L
Sbjct: 468 SLVVQRVLSAQMERAEQNQLHTLFQTKCVIKERSCHVIIDGGSCNNLASAEMVEKLALST 527
Query: 746 TAHPKPYSIGWIDDEYQKQALNSATLH 826
HP+PY I W++ + + +H
Sbjct: 528 QPHPQPYYIQWLNSSGKVKVTRLVRVH 554
>emb|CAE04927.2| OSJNBa0017P10.4 [Oryza sativa Japonica Group]
gi|38345441|emb|CAE03293.2| OSJNBb0046P18.9 [Oryza
sativa Japonica Group]
Length = 1134
Score = 65.9 bits (159), Expect(2) = 2e-16
Identities = 28/63 (44%), Positives = 43/63 (68%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
T+ ++ F IG Y + C++VPM+ C+ILLG PW DKD + ++N YSF+++ K+V
Sbjct: 720 TKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDKDSLHHGRSNQYSFLYHDKKIV 779
Query: 985 LHP 993
LHP
Sbjct: 780 LHP 782
Score = 47.8 bits (112), Expect(2) = 2e-16
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +2
Query: 572 SCVIHNLLSIQ--HVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLK 745
S ++ +LS Q + R+ LF C V+++ ++IID S N+ SS M + + L
Sbjct: 640 SLIVQRVLSTQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALST 699
Query: 746 TAHPKPYSIGWIDD 787
HP PY I W+++
Sbjct: 700 KPHPHPYYIQWLNN 713
>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
Length = 2241
Score = 65.1 bits (157), Expect(2) = 3e-16
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
T+ ++ F IG Y + C++VPM+ C+ILLG PW D+D + ++N YSF+++ K+V
Sbjct: 631 TKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIV 690
Query: 985 LHP----SYAKPKPSQPAKYKHVADK 1050
LHP + ++ AK K +DK
Sbjct: 691 LHPMSPEDILRDDVAKAAKSKCESDK 716
Score = 48.1 bits (113), Expect(2) = 3e-16
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +2
Query: 572 SCVIHNLLSIQ--HVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLK 745
S ++ +LS Q + R+ LF C V+++ ++IID S N+ SS M + + L
Sbjct: 551 SLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALST 610
Query: 746 TAHPKPYSIGWIDD 787
HP PY I W+++
Sbjct: 611 KPHPHPYCIQWLNN 624
>ref|XP_004977878.1| PREDICTED: uncharacterized protein LOC101763064 [Setaria italica]
Length = 1131
Score = 66.6 bits (161), Expect(2) = 3e-16
Identities = 31/63 (49%), Positives = 40/63 (63%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
T+ + F IG+Y I C++VPM+ C +LLG PW D D + K N YSFMHN K+V
Sbjct: 547 TRLVRVNFAIGSYHDSIDCDVVPMQACSMLLGRPWQFDIDSLHHGKTNQYSFMHNDKKLV 606
Query: 985 LHP 993
LHP
Sbjct: 607 LHP 609
Score = 46.6 bits (109), Expect(2) = 3e-16
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +2
Query: 572 SCVIHNLLSIQ--HVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLK 745
S V+ +LS Q + R+ LF C ++++ ++IID S N+ S+ M + + L
Sbjct: 467 SLVVQRVLSAQMEKAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLALCT 526
Query: 746 TAHPKPYSIGWID 784
HP+PY I W++
Sbjct: 527 QPHPQPYYIQWLN 539
>ref|XP_004980298.1| PREDICTED: uncharacterized protein LOC101759439 [Setaria italica]
Length = 696
Score = 66.6 bits (161), Expect(2) = 3e-16
Identities = 31/63 (49%), Positives = 40/63 (63%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
TQ + F IG+Y I C++VP++ C +LLG PW D D + K N YSFMHN K+V
Sbjct: 155 TQLVRVNFAIGSYHDSIDCDVVPIQACSMLLGRPWQFDIDSLHHGKTNQYSFMHNDKKLV 214
Query: 985 LHP 993
LHP
Sbjct: 215 LHP 217
Score = 46.6 bits (109), Expect(2) = 3e-16
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +2
Query: 572 SCVIHNLLSIQ--HVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLK 745
S V+ +LS Q + R+ LF C ++++ ++IID S N+ S+ M + + L
Sbjct: 75 SLVVQRVLSAQMEKAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNLASAEMVEKLALCT 134
Query: 746 TAHPKPYSIGWID 784
HP+PY I W++
Sbjct: 135 QPHPQPYYIQWLN 147
>emb|CAE02303.2| OSJNBa0042F21.10 [Oryza sativa Japonica Group]
Length = 2388
Score = 65.1 bits (157), Expect(2) = 3e-16
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
T+ ++ F IG Y + C++VPM+ C+ILLG PW D+D + ++N YSF+++ K+V
Sbjct: 428 TKLVHINFAIGNYHDVVECDVVPMQVCNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIV 487
Query: 985 LHP----SYAKPKPSQPAKYKHVADK 1050
LHP + ++ AK K +DK
Sbjct: 488 LHPMSPEDILRDDVAKAAKSKCESDK 513
Score = 47.8 bits (112), Expect(2) = 3e-16
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +2
Query: 572 SCVIHNLLSIQ--HVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLK 745
S ++ +LS Q + R+ LF C V+++ ++IID S N+ SS M + + L
Sbjct: 348 SLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALST 407
Query: 746 TAHPKPYSIGWIDD 787
HP PY I W+++
Sbjct: 408 KPHPHPYYIQWLNN 421
>emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group]
Length = 1431
Score = 63.5 bits (153), Expect(2) = 4e-16
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
T ++ F IG Y + C+++PM+ C+ILLG PW D+D + ++N YSF+++ K+V
Sbjct: 537 TNLVHINFAIGNYHDVVECDVLPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIV 596
Query: 985 LHP----SYAKPKPSQPAKYKHVADK 1050
LHP + ++ AK K +DK
Sbjct: 597 LHPMSPEDILRDDVAKAAKSKCESDK 622
Score = 48.9 bits (115), Expect(2) = 4e-16
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +2
Query: 572 SCVIHNLLSIQ--HVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLK 745
S ++ +LS Q + R+ LF C V+++ ++IID S N+ SS M + + L
Sbjct: 457 SLIVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALST 516
Query: 746 TAHPKPYSIGWIDDEYQKQALN 811
HP PY I W+++ + + N
Sbjct: 517 KPHPHPYYIQWLNNSGKAKVTN 538
>ref|XP_007052567.1| Gag-pol polyprotein, putative [Theobroma cacao]
gi|508704828|gb|EOX96724.1| Gag-pol polyprotein, putative
[Theobroma cacao]
Length = 794
Score = 60.5 bits (145), Expect(2) = 6e-16
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +1
Query: 805 TQQCNLAFRIGT-YTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKV 981
T++C + F IG Y ++ C+++PM CH+LLG PW +D+ + NTYSF+ + K+
Sbjct: 436 TKRCCVQFSIGNKYEDEVWCDVIPMDACHLLLGRPWQYDRRAHHDGYKNTYSFIKDGAKI 495
Query: 982 VLHPSYAKPKPSQPAKYK 1035
+L P + P + K K
Sbjct: 496 MLTPLKPEDCPKKQEKDK 513
Score = 51.6 bits (122), Expect(2) = 6e-16
Identities = 22/65 (33%), Positives = 37/65 (56%)
Frame = +2
Query: 587 NLLSIQHVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLKTAHPKPY 766
N + + + R+ +F C Q K+ +IIDS S +N+I+++M K +KL HP PY
Sbjct: 363 NTAMLTEDESWLRHNIFHTRCTSQGKVCNVIIDSGSCENVIANYMVKKLKLQTEVHPHPY 422
Query: 767 SIGWI 781
+ W+
Sbjct: 423 KLQWL 427
>gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|108864301|gb|ABA93040.2|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1748
Score = 65.1 bits (157), Expect(2) = 7e-16
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
T+ ++ F IG Y + C++VPM+ C+ILLG PW D+D + ++N YSF+++ K+V
Sbjct: 904 TKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIV 963
Query: 985 LHP----SYAKPKPSQPAKYKHVADK 1050
LHP + ++ AK K +DK
Sbjct: 964 LHPMSSEDILRDDVAKAAKSKCESDK 989
Score = 46.6 bits (109), Expect(2) = 7e-16
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +2
Query: 572 SCVIHNLLSIQ--HVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLK 745
S ++ +LS Q + R+ LF C ++++ ++IID S N+ SS M + + L
Sbjct: 824 SLIVQRVLSAQMEKAEQNQRHTLFQTKCVLKERCCRMIIDGGSCNNLASSEMVEKLALST 883
Query: 746 TAHPKPYSIGWIDD 787
HP PY I W+++
Sbjct: 884 KPHPHPYYIQWLNN 897
>gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
Length = 1739
Score = 65.1 bits (157), Expect(2) = 7e-16
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
T+ ++ F IG Y + C++VPM+ C+ILLG PW D+D + ++N YSF+++ K+V
Sbjct: 895 TKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIV 954
Query: 985 LHP----SYAKPKPSQPAKYKHVADK 1050
LHP + ++ AK K +DK
Sbjct: 955 LHPMSSEDILRDDVAKAAKSKCESDK 980
Score = 46.6 bits (109), Expect(2) = 7e-16
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +2
Query: 572 SCVIHNLLSIQ--HVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLK 745
S ++ +LS Q + R+ LF C ++++ ++IID S N+ SS M + + L
Sbjct: 815 SLIVQRVLSAQMEKAEQNQRHTLFQTKCVLKERCCRMIIDGGSCNNLASSEMVEKLALST 874
Query: 746 TAHPKPYSIGWIDD 787
HP PY I W+++
Sbjct: 875 KPHPHPYYIQWLNN 888
>gb|AAX96591.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|77550404|gb|ABA93201.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1297
Score = 65.1 bits (157), Expect(2) = 7e-16
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
T+ ++ F IG Y + C++VPM+ C+ILLG PW D+D + ++N YSF+++ K+V
Sbjct: 478 TKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIV 537
Query: 985 LHP----SYAKPKPSQPAKYKHVADK 1050
LHP + ++ AK K +DK
Sbjct: 538 LHPMSPEDILRDDVAKAAKSKCESDK 563
Score = 46.6 bits (109), Expect(2) = 7e-16
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 578 VIHNLLSIQ--HVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLKTA 751
++ +LS Q + R+ LF C V+++ ++IID S N+ SS M + + L
Sbjct: 400 IVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKP 459
Query: 752 HPKPYSIGWIDD 787
HP PY I W+++
Sbjct: 460 HPHPYYIQWLNN 471
>gb|AAX96647.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
Length = 1238
Score = 65.1 bits (157), Expect(2) = 7e-16
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
T+ ++ F IG Y + C++VPM+ C+ILLG PW D+D + ++N YSF+++ K+V
Sbjct: 456 TKLVHINFAIGNYHDVVECDVVPMQACNILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIV 515
Query: 985 LHP----SYAKPKPSQPAKYKHVADK 1050
LHP + ++ AK K +DK
Sbjct: 516 LHPMSPEDILRDDVAKAAKSKCESDK 541
Score = 46.6 bits (109), Expect(2) = 7e-16
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 578 VIHNLLSIQ--HVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKLLKTA 751
++ +LS Q + R+ LF C V+++ ++IID S N+ SS M + + L
Sbjct: 378 IVQRVLSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLASSEMVEKLALSTKP 437
Query: 752 HPKPYSIGWIDD 787
HP PY I W+++
Sbjct: 438 HPHPYYIQWLNN 449
>ref|XP_004980437.1| PREDICTED: uncharacterized protein LOC101781709 [Setaria italica]
Length = 1055
Score = 64.3 bits (155), Expect(2) = 7e-16
Identities = 26/63 (41%), Positives = 39/63 (61%)
Frame = +1
Query: 805 TQQCNLAFRIGTYTYQILCNIVPMRTCHILLGCPWAHDKDVAYIRKANTYSFMHNKVKVV 984
TQ C ++F IG Y + C++VPM+ C +LLG PW HD D + ++N Y+ M+ K+
Sbjct: 536 TQTCRVSFSIGAYADFVDCDVVPMQACSLLLGRPWEHDNDATHHGRSNKYTLMYKGQKIT 595
Query: 985 LHP 993
L P
Sbjct: 596 LVP 598
Score = 47.4 bits (111), Expect(2) = 7e-16
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +2
Query: 566 HLSCVIHNLLS--IQHVDHFTRYYLFCNTCRVQDKLYQLIIDSASSKNIISSHMAKTIKL 739
+++ ++ +LS IQ + R+ LF + ++ ++IID S N++SS + K + L
Sbjct: 454 YMNIIVQRVLSTQIQQPESLQRHNLFQTFFVINNRRARVIIDGGSCNNLVSSDLVKKLGL 513
Query: 740 LKTAHPKPYSIGWIDD 787
HP PY I W++D
Sbjct: 514 STRPHPHPYHIQWLND 529